Citrus Sinensis ID: 033920

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccccccccccccccccccEEEEEccHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MAWRQIFNNAGANSMVAVSGFsrfftskasnQYIVKVGIPeflngigkgveTHSAKLESEIGDFQRLLVTRTLKLkklgipckhrkLILKHTHKYRlglwrpraapaka
Flexible Loop (DISEMBL)
mawrqifnnagansmVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLklkklgipckhrklilkhthkyrlglwrpraapaka
Low Complexity Region (SEG)
MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQrllvtrtlklkklGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA
Disordered region (IsUnstruct)
***RQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWR********
Disordered Region (DISOPRED)
*AWR***NNAGA**MV*********************GIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLW*********
Disordered Region (DISEMBL)
MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA
Disordered Region (DISPRO)
***************************KASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
225450553	108	PREDICTED: uncharacterized protein LOC10	0.963	0.972	0.761	3e-39
147818274	108	hypothetical protein VITISV_026720 [Viti	0.963	0.972	0.761	3e-39
224124466	117	predicted protein [Populus trichocarpa]	0.990	0.923	0.704	2e-38
118482088	117	unknown [Populus trichocarpa] gi|1184823	0.990	0.923	0.678	6e-37
255542926	112	conserved hypothetical protein [Ricinus	0.981	0.955	0.690	2e-36
296089792	98	unnamed protein product [Vitis vinifera]	0.816	0.908	0.813	6e-36
449435566	109	PREDICTED: uncharacterized protein LOC10	0.981	0.981	0.709	8e-35
255559038	114	conserved hypothetical protein [Ricinus	0.981	0.938	0.652	4e-34
224122900	117	predicted protein [Populus trichocarpa]	1.0	0.931	0.710	7e-34
351724245	109	uncharacterized protein LOC100499861 [Gl	0.917	0.917	0.694	1e-33

>gi|225450553|ref|XP_002281765.1| PREDICTED: uncharacterized protein LOC100257949 [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 90/109 (82%), Gaps = 4/109 (3%)

Query: 1   MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESE 60
           MAWRQI +N    S  A  G  RFF+   S  YIVKVGIPEFLNGIGKGVETH AKLE+E
Sbjct: 1   MAWRQIISNRMGVSWQA--GLPRFFSK--STPYIVKVGIPEFLNGIGKGVETHVAKLETE 56

Query: 61  IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           IGDFQ+LLVTRTL+LKKLGIPCKHRKLIL+HTHKYRLGLWRPRA P K+
Sbjct: 57  IGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYRLGLWRPRAEPIKS 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818274|emb|CAN64719.1| hypothetical protein VITISV_026720 [Vitis vinifera]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 90/109 (82%), Gaps = 4/109 (3%)

Query: 1   MAWRQIFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESE 60
           MAWRQI +N    S  A  G  RFF+   S  YIVKVGIPEFLNGIGKGVETH AKLE+E
Sbjct: 1   MAWRQIISNRMGISWQA--GLPRFFSK--STPYIVKVGIPEFLNGIGKGVETHVAKLETE 56

Query: 61  IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           IGDFQ+LLVTRTL+LKKLGIPCKHRKLIL+HTHKYRLGLWRPRA P K+
Sbjct: 57  IGDFQKLLVTRTLRLKKLGIPCKHRKLILRHTHKYRLGLWRPRAEPIKS 105

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124466|ref|XP_002330030.1| predicted protein [Populus trichocarpa] gi|222871455|gb|EEF08586.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 89/115 (77%), Gaps = 7/115 (6%)

Query: 1   MAWRQIFNNA------GANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHS 54
           MAWRQIF N            V+  G SRFF SK+S+ Y+VKVGIPEFLNGIGKGVE H 
Sbjct: 3   MAWRQIFTNTKRAFSIPPERAVSTPGLSRFF-SKSSSPYLVKVGIPEFLNGIGKGVEAHV 61

Query: 55  AKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
            KLESEIGDF +LLVTRTLKLKKLGIPC+ RKLILK+ HKYR+GLWRPRA P KA
Sbjct: 62  TKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYRVGLWRPRAQPVKA 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482088|gb|ABK92975.1| unknown [Populus trichocarpa] gi|118482329|gb|ABK93090.1| unknown [Populus trichocarpa]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/115 (67%), Positives = 87/115 (75%), Gaps = 7/115 (6%)

Query: 1   MAWRQIFNNA------GANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHS 54
           M WR IF N            ++  G SRFF SK+S+ Y+VKVGIPEFLNGIGKGVE H 
Sbjct: 3   MTWRLIFTNTKRAFSIPPQRAISTPGLSRFF-SKSSSPYLVKVGIPEFLNGIGKGVEAHV 61

Query: 55  AKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
            KLESEIGDF +LLVTRTLKLKKLGIPC+ RKLILK+ HKYR+GLWRPRA P KA
Sbjct: 62  TKLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYRVGLWRPRAQPVKA 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542926|ref|XP_002512526.1| conserved hypothetical protein [Ricinus communis] gi|223548487|gb|EEF49978.1| conserved hypothetical protein [Ricinus communis]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 78/113 (69%), Positives = 89/113 (78%), Gaps = 6/113 (5%)

Query: 1   MAWRQIFNNAGANSMVA----VSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAK 56
           MAWRQ+ NN    S+ A      GF RFF+   S  YIVKVGIPEFLNGIGKGVE H+AK
Sbjct: 1   MAWRQLMNNTREFSVFAQANSTPGFVRFFSK--SPPYIVKVGIPEFLNGIGKGVEAHAAK 58

Query: 57  LESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           LESEIGDFQ+LL+TRTLKLKK+GIPC+HRKLIL + HK+R+GLWRPRA   KA
Sbjct: 59  LESEIGDFQKLLITRTLKLKKIGIPCQHRKLILNYAHKFRVGLWRPRADLMKA 111

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089792|emb|CBI39611.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 81/91 (89%), Gaps = 2/91 (2%)

Query: 19  SGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKL 78
           +G  RFF+   S  YIVKVGIPEFLNGIGKGVETH AKLE+EIGDFQ+LLVTRTL+LKKL
Sbjct: 7   AGLPRFFSK--STPYIVKVGIPEFLNGIGKGVETHVAKLETEIGDFQKLLVTRTLRLKKL 64

Query: 79  GIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           GIPCKHRKLIL+HTHKYRLGLWRPRA P K+
Sbjct: 65  GIPCKHRKLILRHTHKYRLGLWRPRAEPIKS 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435566|ref|XP_004135566.1| PREDICTED: uncharacterized protein LOC101215337 [Cucumis sativus] gi|449519766|ref|XP_004166905.1| PREDICTED: uncharacterized LOC101215337 [Cucumis sativus]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/110 (70%), Positives = 87/110 (79%), Gaps = 3/110 (2%)

Query: 1   MAWRQIFNNAGAN-SMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAKLES 59
           MAWR I +N  +     +   F+RFF+   S+ YIVKVGIPEFL GIG GVE+H AKLES
Sbjct: 2   MAWRNIVSNHRSILQPYSAPLFARFFSK--SSPYIVKVGIPEFLTGIGHGVESHVAKLES 59

Query: 60  EIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           EIGDFQ+LLVTRTLKLKKLGIPCKHRKLILK+THKYRLGLWRPR    KA
Sbjct: 60  EIGDFQKLLVTRTLKLKKLGIPCKHRKLILKYTHKYRLGLWRPRFDSLKA 109

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559038|ref|XP_002520542.1| conserved hypothetical protein [Ricinus communis] gi|223540384|gb|EEF41955.1| conserved hypothetical protein [Ricinus communis]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 85/115 (73%), Gaps = 8/115 (6%)

Query: 1   MAWRQIFNNAGANSMVA------VSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHS 54
           MAWR +  NA   S         + GFSRFF+   +  YI KVGIPEFL GIGKGVE H+
Sbjct: 1   MAWRVVVKNASKVSSFTPQQPNLIRGFSRFFSK--TPPYIAKVGIPEFLTGIGKGVEAHA 58

Query: 55  AKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           AKLESEIGDF +LLVTRTLKL+KLGIPC+HRKLIL + HKYR+GLWRPRA   KA
Sbjct: 59  AKLESEIGDFHKLLVTRTLKLRKLGIPCQHRKLILNYAHKYRVGLWRPRAGLMKA 113

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122900|ref|XP_002318944.1| predicted protein [Populus trichocarpa] gi|118483456|gb|ABK93627.1| unknown [Populus trichocarpa] gi|222857320|gb|EEE94867.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (372), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 88/114 (77%), Gaps = 5/114 (4%)

Query: 1   MAWRQIFNNAG-ANSMVAVSGFS----RFFTSKASNQYIVKVGIPEFLNGIGKGVETHSA 55
           MAWRQI  N   A S+      S      F SK+S++YIVKVGIPEFLNGIGKGVE H A
Sbjct: 3   MAWRQIITNTKRAVSIPTQQAISTPGFSRFFSKSSSRYIVKVGIPEFLNGIGKGVEAHVA 62

Query: 56  KLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
           KLESEIGDF +LLVTRTLKLKKLGIPC+ RKLILK+ HKYRLGLWRPRA P KA
Sbjct: 63  KLESEIGDFHKLLVTRTLKLKKLGIPCQQRKLILKYAHKYRLGLWRPRAEPVKA 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724245|ref|NP_001237051.1| uncharacterized protein LOC100499861 [Glycine max] gi|255627217|gb|ACU13953.1| unknown [Glycine max]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/108 (69%), Positives = 85/108 (78%), Gaps = 8/108 (7%)

Query: 1   MAWRQ----IFNNAGANSMVAVSGFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAK 56
           MAW Q    I N  G  +++  S   RFF+    + Y++KVGIPEFLNGIGKGVE+H  K
Sbjct: 1   MAWLQLQRIITNTKGGANLI--SPLPRFFSK--CSPYVLKVGIPEFLNGIGKGVESHVPK 56

Query: 57  LESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRA 104
           LESEIGDFQ+LLV RTLKLKKLGIPCKHRKLILK+THKYRLGLWRPRA
Sbjct: 57  LESEIGDFQKLLVIRTLKLKKLGIPCKHRKLILKYTHKYRLGLWRPRA 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2074424	112	AT3G05810 "AT3G05810" [Arabido	0.990	0.964	0.530	2e-24

TAIR|locus:2074424 AT3G05810 "AT3G05810" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/113 (53%), Positives = 70/113 (61%)

Query:     1 MAWRQIFNNAGANSMVAVS----GFSRFFTSKASNQYIVKVGIPEFLNGIGKGVETHSAK 56
             MAW ++  +A A    A S    G  RF +SK +  Y VKVGIPEFL GIG+G ETH AK
Sbjct:     1 MAWTRLIQSARAALGTAQSCSTLGLPRFHSSKPAT-YFVKVGIPEFLGGIGRGAETHIAK 59

Query:    57 LESEIGDFQXXXXXXXXXXXXXGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
             +E+EIGD               GIPCKHRKLILK+  KYRLGLW+PRA   KA
Sbjct:    60 IETEIGDLHKLLVTRTLRLKKLGIPCKHRKLILKYGQKYRLGLWKPRADAIKA 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      109        96   0.00091  102 3  11 22  0.49    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.09u 0.10s 9.19t   Elapsed:  00:00:00
  Total cpu time:  9.09u 0.10s 9.19t   Elapsed:  00:00:00
  Start:  Fri May 10 08:29:27 2013   End:  Fri May 10 08:29:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	109
pfam09597	57	pfam09597, IGR, IGR protein motif	7e-18

>gnl|CDD|192323 pfam09597, IGR, IGR protein motif

 Score = 70.8 bits (174), Expect = 7e-18
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 39 IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98
          +  FL  IG+G   H+ K ES+     +L  T + +LK+LGIP K R+ IL    K+R G
Sbjct: 1  VETFLKLIGRGCSEHADKFESKW---DKLFETSSKQLKELGIPVKQRRYILSQREKFRNG 57

This domain is found in fungal proteins and contains a conserved IGR motif. Its function is unknown. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
PF09597	57	IGR: IGR protein motif; InterPro: IPR019083 This e	99.98
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	98.39
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	98.2
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	97.89
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	97.88
KOG4384	361	consensus Uncharacterized SAM domain protein [Gene	96.5
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	84.92
KOG4374	216	consensus RNA-binding protein Bicaudal-C [RNA proc	80.4

>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif

Probab=99.98  E-value=5e-33  Score=180.63  Aligned_cols=57  Identities=46%  Similarity=0.853  Sum_probs=56.2

Q ss_pred             HHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920           39 IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        39 V~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      |+|||++|||||++|++|||+   +|++||+++|.+||++||||++|||||+|+||||+|
T Consensus         1 V~tFL~~IGR~~~~~~~kf~~---~w~~lf~~~s~~LK~~GIp~r~RryiL~~~ek~r~G   57 (57)
T PF09597_consen    1 VETFLKLIGRGCEEHAEKFES---DWEKLFTTSSKQLKELGIPVRQRRYILRWREKYRQG   57 (57)
T ss_pred             CHHHHHHHcccHHHHHHHHHH---HHHHHHhcCHHHHHHCCCCHHHHHHHHHHHHHHhCc
Confidence            799999999999999999998   999999999999999999999999999999999998

Its function is unknown.

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=98.39  E-value=5.6e-07  Score=56.06  Aligned_cols=58  Identities=31%  Similarity=0.461  Sum_probs=51.8

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR   96 (109)
                      -+|.+||+.||  +++|++.|+...=|.+.|+.++...|+++|| ++-+|+.|++-.+++|
T Consensus         6 ~~V~~WL~~~~--l~~y~~~F~~~~i~g~~L~~lt~~dL~~lgi~~~ghr~ki~~~i~~Lk   64 (64)
T PF00536_consen    6 EDVSEWLKSLG--LEQYAENFEKNYIDGEDLLSLTEEDLEELGITKLGHRKKILRAIQKLK   64 (64)
T ss_dssp             HHHHHHHHHTT--GGGGHHHHHHTTSSHHHHTTSCHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC--CHHHHHHHHcCCchHHHHHhcCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            47999999997  9999999977677899999999999999999 5599999999998876

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>cd00166 SAM Sterile alpha motif

Probab=98.20  E-value=2.8e-06  Score=51.25  Aligned_cols=58  Identities=31%  Similarity=0.404  Sum_probs=50.4

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYR   96 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR   96 (109)
                      .+|.+||+.+|  +++|++.|...==|.+.|..++...|+++||+ +-+|+.|++..++++
T Consensus         5 ~~V~~wL~~~~--~~~y~~~f~~~~i~g~~L~~l~~~dL~~lgi~~~g~r~~i~~~i~~l~   63 (63)
T cd00166           5 EDVAEWLESLG--LGQYADNFRENGIDGDLLLLLTEEDLKELGITLPGHRKKILKAIQKLK   63 (63)
T ss_pred             HHHHHHHHHcC--hHHHHHHHHHcCCCHHHHhHCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            48999999997  89999999865338999999999999999995 499999999887653

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>smart00454 SAM Sterile alpha motif

Probab=97.89  E-value=2.9e-05  Score=46.98  Aligned_cols=59  Identities=32%  Similarity=0.401  Sum_probs=50.7

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhc-hHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTR-TLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~-S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      .+|..||..+|  +.+|++.|...-=+-..|+..+ ...|+++|| ++-+|+.|++..+++|.
T Consensus         7 ~~v~~wL~~~g--~~~y~~~f~~~~i~g~~ll~~~~~~~l~~lgi~~~~~r~~ll~~i~~l~~   67 (68)
T smart00454        7 ESVADWLESIG--LEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILKAIQKLKD   67 (68)
T ss_pred             HHHHHHHHHCC--hHHHHHHHHHCCCCHHHHHhcChHHHHHHcCCCcHHHHHHHHHHHHHHHh
Confidence            48999999997  9999999987533446788888 899999999 89999999999988874

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=97.88  E-value=1.7e-05  Score=49.48  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=50.5

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR   96 (109)
                      ..+|.+||..+|  +.+|++.|...= ...+.|..++...|+++|| +..+|+.||+-.++.|
T Consensus         6 ~~~v~~WL~~~g--l~~y~~~f~~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk   66 (66)
T PF07647_consen    6 PEDVAEWLKSLG--LEQYADNFRENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK   66 (66)
T ss_dssp             HHHHHHHHHHTT--CGGGHHHHHHTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC--cHHHHHHHHHcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence            458999999996  899999999733 4447799999999999999 8899999999887654

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]

Probab=96.50  E-value=0.0053  Score=52.40  Aligned_cols=59  Identities=25%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             CCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      -.|+++|.+||  +++|.++|-. --.+++.+=..+-..|-++|| .+.+||.||.-+|.++.
T Consensus       216 ~~~~ewL~~i~--le~y~~~~L~nGYd~le~~k~i~e~dL~~lgI~nP~Hr~kLL~av~~~~e  276 (361)
T KOG4384|consen  216 KSLEEWLRRIG--LEEYIETLLENGYDTLEDLKDITEEDLEELGIDNPDHRKKLLSAVELLKE  276 (361)
T ss_pred             hHHHHHHHHhh--HHHHHHHHHHcchHHHHHHHhccHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            47999999998  9999999854 224577777888899999999 99999999999988774

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=84.92  E-value=2.3  Score=40.65  Aligned_cols=66  Identities=18%  Similarity=0.267  Sum_probs=56.7

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLW  100 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~  100 (109)
                      +..-..|.++|..|+  |..+.+.|-++= ...+.+..++.+.|+.+|| =+-+-|.||.-.|-.|.+.-
T Consensus       920 ~~~f~sv~~WL~aIk--m~rY~~~F~~ag~~s~~~V~q~s~eDl~~~Gitl~GhqkkIl~SIq~m~~q~~  987 (996)
T KOG0196|consen  920 FTPFRSVGDWLEAIK--MGRYKEHFAAAGYTSFEDVAQMSAEDLLRLGITLAGHQKKILSSIQAMRAQMR  987 (996)
T ss_pred             CcccCCHHHHHHHhh--hhHHHHHHHhcCcccHHHHHhhhHHHHHhhceeecchhHHHHHHHHHHHHHhc
Confidence            445689999999998  999999998754 7899999999999999999 67788889988888887763

>KOG4374 consensus RNA-binding protein Bicaudal-C [RNA processing and modification]

Probab=80.40  E-value=2.8  Score=33.86  Aligned_cols=59  Identities=27%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      -+|--+|...|  |.++-.-|+-.==||++|..++...||.+|| +.--||.|+..-++-|.
T Consensus       152 ~~vl~~L~~lg--lg~y~~~f~~~evd~~~l~~lte~dlk~~gi~~~GpRkKi~~A~~~~r~  211 (216)
T KOG4374|consen  152 EGVLMELGILG--LGAYWKMFEAIEVDMDNLRLLTEEDLKDMGINSVGPRKKILCAIGKLRR  211 (216)
T ss_pred             chHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhcccchhhhhcccccCcchhhhhhhhcccc
Confidence            34556677776  8888888876447999999999999999999 99999999998887664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	3e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} Length = 74

 Score = 35.5 bits (82), Expect = 3e-04
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 39  IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG 98
           +  FL  +   +E  +A L  E  D + L++   L L+ + +P   R+ IL    + R  
Sbjct: 5   LETFLASLH--MEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRRRQA 62

Query: 99  LWRPRAA 105
           + RP A 
Sbjct: 63  MERPPAL 69

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 15/36 (41%)

Query: 74  KLKKLGIPCKHRKLILKHTHKYRLGLWRPRAAPAKA 109
            LKKL               +  L L+   +APA A
Sbjct: 21  ALKKL---------------QASLKLYADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	98.53
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	98.47
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	98.43
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	98.43
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	98.41
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	98.39
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	98.39
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	98.36
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	98.35
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	98.33
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	98.32
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	98.32
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	98.3
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	98.28
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	98.25
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	98.25
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	98.23
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	98.22
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	98.2
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	98.19
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	98.17
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	98.17
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	98.17
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	98.07
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	98.01
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	98.0
2y9t_A	82	Tumor protein 63; apoptosis, sterIle alpha motif,	97.99
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	97.96
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	97.95
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	97.92
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	97.9
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	97.9
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	97.82
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	97.78
2es6_A	101	VTS1P; SAM domain, protein structure, gene regulat	97.74
1kw4_A	89	Polyhomeotic; SAM domain, polycomb group, polymer,	97.71
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	97.69
2y9u_A	69	Tumor protein 63; apoptosis, sterIle alpha motif,	97.65
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	97.49
1wwv_A	91	Connector enhancer of kinase suppressor of RAS 1;	97.43
1oxj_A	173	RNA-binding protein smaug; SAM domain, PHAT domain	97.39
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	97.3
1pk1_B	89	Sex COMB on midleg CG9495-PA; hetero SAM domain, p	96.74
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	95.31
1dxs_A	80	P53-like transcription factor; P73 SAM-like domain	94.76
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	94.51
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	93.84
3tac_B	334	Liprin-alpha-2; transferase-protein binding comple	85.18

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=98.53  E-value=1e-07  Score=64.19  Aligned_cols=64  Identities=16%  Similarity=0.322  Sum_probs=56.4

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      +...-+|.+||..||  +++|.+.|... +.+++.|..++...|+++|| .+-+||.||+-.++.|..
T Consensus        23 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~L~~~   88 (94)
T 1b0x_A           23 FSAVVSVGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQ   88 (94)
T ss_dssp             CCSSCCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHCC--cHHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence            445679999999998  99999999874 45899999999999999999 569999999999888754

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=98.47  E-value=1.3e-07  Score=62.01  Aligned_cols=65  Identities=18%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl   99 (109)
                      +....+|.+||..||  +++|.+.|...= -|++.|..++...||++||+ .-+||.||+-.++.|.-.
T Consensus        12 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~   78 (83)
T 2qkq_A           12 YSAFGSVGEWLRAIK--MGRYEESFAAAGFGSFELVSQISAEDLLRIGVTLAGHQKKILASVQHMKSQA   78 (83)
T ss_dssp             --CCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTC----
T ss_pred             CCccchHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence            445669999999998  999999998644 58999999999999999995 899999999999888655

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=98.43  E-value=2.3e-07  Score=60.68  Aligned_cols=65  Identities=28%  Similarity=0.441  Sum_probs=58.2

Q ss_pred             CHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcccccCC
Q 033920           38 GIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGLWRPRA  104 (109)
Q Consensus        38 dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl~~P~g  104 (109)
                      +|.+||..||  +++|.+.|+.+-=|++.|..++...||++||++-+||.||+..+..|.-+=.|+.
T Consensus         4 ~v~~wL~~lg--L~~Y~~~F~~~~id~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~~~~~~~~~p~~   68 (74)
T 3k1r_B            4 PLETFLASLH--MEDFAALLRQEKIDLEALMLCSDLDLRSISVPLGPREKILGAVRRRRQAMERPPA   68 (74)
T ss_dssp             HHHHHHHTTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             hHHHHHHHCC--CHHHHHHHHHcCcCHHHHhHCCHHHHHHcCCCcchHHHHHHHHHHHHHHhcCCCC
Confidence            5899999997  9999999976545899999999999999999999999999999998887766653

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=98.43  E-value=1.7e-07  Score=64.54  Aligned_cols=62  Identities=16%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CCHHHHHhhhccchhHHHHhh-hhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccc
Q 033920           37 VGIPEFLNGIGKGVETHSAKL-ESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLW  100 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kf-es~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~  100 (109)
                      +.|.+||..||  |.+|++.| +|.|-..+.|..++...|||+|| .+-+|..||+.+...|+..-
T Consensus        16 ~~v~~wL~si~--c~qY~~~F~eN~I~g~d~L~eLd~e~LkElGI~kvGdRirIlk~vk~Lr~~~~   79 (85)
T 1ow5_A           16 PFVQLFLEEIG--CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQRDKR   79 (85)
T ss_dssp             CHHHHHHHHHS--CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHcC--ChhHHHHHHHcCCCcHHHHHHcCHHHHHHhCCCcccHHHHHHHHHHHHHHHHh
Confidence            48999999996  99999999 56677789999999999999999 99999999999988887553

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=4.7e-07  Score=60.18  Aligned_cols=64  Identities=13%  Similarity=0.175  Sum_probs=55.9

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLG   98 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~G   98 (109)
                      |...-+|.+||..||  +++|.+.|..+ +.+++.|..++...||++||+ +-+||.||+-.++.|.-
T Consensus         9 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~~l~~~   74 (88)
T 2e8n_A            9 GVPFRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLLGLKDQ   74 (88)
T ss_dssp             CCSCSSHHHHHHHTT--CGGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHh
Confidence            444569999999998  99999999764 456999999999999999995 69999999999998854

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=98.39  E-value=4.5e-07  Score=61.40  Aligned_cols=63  Identities=17%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      +....+|.+||..||  +++|.+.|... +.+++.|..++...|+++|| ++-+||.||+..++.|.
T Consensus        22 ~~~~~~V~~WL~~lg--L~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai~~Lr~   86 (90)
T 3h8m_A           22 FTTFCSVGEWLQAIK--MERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRA   86 (90)
T ss_dssp             CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHCC--hHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            444569999999998  99999999764 46799999999999999999 57999999999998875

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=98.39  E-value=5.2e-07  Score=58.91  Aligned_cols=65  Identities=17%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl   99 (109)
                      |...-+|.+||..||  +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|...
T Consensus         8 ~~~~~~v~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai~~l~~~~   74 (82)
T 1b4f_A            8 YTSFNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRAQM   74 (82)
T ss_dssp             CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHCC--CHHHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence            445569999999998  99999999764 458999999999999999995 689999999999888644

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=98.36  E-value=3.8e-07  Score=61.35  Aligned_cols=62  Identities=26%  Similarity=0.365  Sum_probs=55.3

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl   99 (109)
                      ..+|.+||..||  +++|.+.|... +.+++.|..++...|+++|| .+-+||.||+-.+..|.-.
T Consensus        15 ~~~V~~WL~~lg--L~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai~~L~~~~   78 (91)
T 1x40_A           15 NVDIKDFLMSIN--LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKM   78 (91)
T ss_dssp             CCBHHHHHHTTT--CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHHHHHHhhc
Confidence            458999999997  99999999763 45799999999999999999 6999999999999998544

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=9.9e-07  Score=59.84  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=58.6

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhccccc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGLWRP  102 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl~~P  102 (109)
                      |...-+|.+||..||  +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|.-.-.|
T Consensus        19 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~l~~~~~~~   88 (99)
T 2eao_A           19 FTAFTTVDDWLSAIK--MVQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITLAGHQKKILNSIHSMRVQISQS   88 (99)
T ss_dssp             TTSCCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CcchHHHHHHHHHCC--cHHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCChhHHHHHHHHHHHHHHHhhcc
Confidence            555679999999998  99999999764 456999999999999999995 699999999999999765433

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=98.33  E-value=5.9e-07  Score=57.90  Aligned_cols=66  Identities=18%  Similarity=0.250  Sum_probs=56.3

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWR  101 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~  101 (109)
                      .-+|.+||..|+.|+.+|++.|...-=|-+.|+.++...||++|| +.-+|+.||+..++.|.--++
T Consensus         9 ~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~~~   75 (80)
T 3bs5_B            9 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYG   75 (80)
T ss_dssp             HHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhc
Confidence            458999999996679999999965433568999999999999999 889999999999998875443

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=98.32  E-value=4.7e-07  Score=59.97  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      +...-+|.+||..||  +++|.+.|... +.+++.|..++...||++|| .+-+||.||+-.++.|.-
T Consensus        13 ~~~~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~~   78 (82)
T 2kso_A           13 RGSHMTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKDQ   78 (82)
T ss_dssp             -----CHHHHHHHTT--CTTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHHHHHHH
Confidence            444569999999998  99999999764 35699999999999999999 569999999999988864

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=98.32  E-value=7.6e-07  Score=58.36  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhcc
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~Gl   99 (109)
                      +...-+|.+||..||  +++|.+.|... +.+++.|..++...||++||+ +-+||.||+-.++.|.-.
T Consensus         4 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai~~l~~~~   70 (81)
T 1ucv_A            4 GSSGLTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             CCCCSBHHHHHHHTT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHCC--CHHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Confidence            444569999999998  99999999764 456999999999999999995 699999999999988644

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=98.30  E-value=7.2e-07  Score=59.92  Aligned_cols=60  Identities=13%  Similarity=0.205  Sum_probs=52.3

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      ..+|.+||..||  +++|.+.|... +.+++.|..++-..|+++|| ++-+||.||+..+..|.
T Consensus        21 ~~~V~~WL~~lg--L~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai~~Lr~   82 (86)
T 3kka_C           21 FRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD   82 (86)
T ss_dssp             --CHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHCC-
T ss_pred             hhHHHHHHHhCC--cHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            459999999998  99999999864 46699999999999999999 67999999999988775

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=98.28  E-value=4.9e-07  Score=58.41  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhhc
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRLG   98 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~G   98 (109)
                      -+|.+||..||  +++|++.|...-=|.+.|+.++...||++||+ .-+|+.||+..+++|..
T Consensus         8 ~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~Ghr~kIl~aI~~l~~~   68 (76)
T 2f3n_A            8 FDVGDWLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQLDGS   68 (76)
T ss_dssp             HHHHHHHHHTT--CGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCChhHHHHHHHHHHHHHHH
Confidence            48999999997  99999999764434559999999999999995 89999999999888754

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=98.25  E-value=8.5e-07  Score=57.90  Aligned_cols=61  Identities=18%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-+|.+||..||  +++|++.|...-=|-..|+.++...||++|| +.-+|+.||+..+++|.-
T Consensus        12 ~~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~~ghr~kIl~aI~~L~~~   73 (81)
T 3bq7_A           12 TEEVAAWLEHLS--LCEYKDIFTRHDIRGSGLLHLERRDLKDLGVTKVGHMKRILCGIKELSRS   73 (81)
T ss_dssp             HHHHHHHHHHTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHCcCCHHHHhHcCCCCHHHHHHHHHHHHHHHHH
Confidence            468999999997  9999999976543456699999999999999 889999999999988764

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=98.25  E-value=1.1e-06  Score=55.80  Aligned_cols=60  Identities=20%  Similarity=0.332  Sum_probs=52.0

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~   97 (109)
                      .-+|.+||..||  +.+|++.|...-=|-+.|+.++...||++||+ .-+|+.|++..++.|.
T Consensus         9 ~~~V~~WL~~~g--l~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~   69 (74)
T 2gle_A            9 VQQVSHWLVGLS--LDQYVSEFSAQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKM   69 (74)
T ss_dssp             SGGGHHHHHHTT--THHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            459999999997  99999999654324489999999999999995 8999999999888775

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=98.23  E-value=1.1e-06  Score=59.31  Aligned_cols=63  Identities=21%  Similarity=0.317  Sum_probs=53.8

Q ss_pred             CccccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920           32 QYIVKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        32 p~~~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR   96 (109)
                      ++...-+|.++|..||  +++|.+.|.. .+.+++.|..++...|+++|| .+-+||.||+-.+..+
T Consensus        22 ~~~~~~~V~eWL~~lg--L~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~aI~~LK   86 (86)
T 2k4p_A           22 SGLGEAGMSAWLRAIG--LERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDTLQLSK   86 (86)
T ss_dssp             CCCCSCSSHHHHHTTT--CGGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHCC
T ss_pred             CCCCcCcHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence            3444569999999998  9999999976 346799999999999999999 5899999999887653

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=98.22  E-value=7.4e-07  Score=61.70  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             ccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHh--hhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           35 VKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLL--VTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        35 ~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf--~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      ..-+|.++|..||  +++|.+.|.. .+.+++.|.  .++.+.|+++|| .+-+||.||+-.+..|.-
T Consensus        28 ~~~~V~eWL~~Lg--L~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt~~GHRkkIL~aI~~L~~~   93 (101)
T 2lmr_A           28 LEQSVGEWLESIG--LQQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGISDPQHRRKLLQAARSLPKV   93 (101)
T ss_dssp             SSCCHHHHHHHHT--CGGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCCCHHHHHHHHHHHHTSSSC
T ss_pred             CcccHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHhc
Confidence            3459999999998  9999999965 345688887  899999999999 589999999999887753

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=98.20  E-value=1.5e-06  Score=56.92  Aligned_cols=61  Identities=21%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      ..+|.++|..||  +++|.+.|.. .+.+++.+-.++...|+++|| ++-+||.||+-.+..+..
T Consensus        12 ~~~V~eWL~~i~--L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~~L~~~   74 (78)
T 1v38_A           12 HQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSG   74 (78)
T ss_dssp             CCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSC
T ss_pred             cCcHHHHHHHCC--CHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence            348999999998  9999999964 335799999999999999999 689999999999887754

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=2e-06  Score=55.97  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=57.2

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccccc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRP  102 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P  102 (109)
                      .-+|.+||..|+.++.+|++.|...-=|-+.|+.++...||++|| +.-+|+.||+..++.|.-.++.
T Consensus        13 ~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~~~l   80 (83)
T 2ean_A           13 PSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGP   80 (83)
T ss_dssp             TTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            568999999996678999999965433568999999999999999 8899999999999998765543

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=98.17  E-value=1.5e-06  Score=59.78  Aligned_cols=62  Identities=21%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl   99 (109)
                      ..+|.+||..||  +++|++.|... |.+++.|..++...||++|| .+-+||.||+-.++.|.-.
T Consensus        26 ~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~aI~~Lr~~~   89 (100)
T 2kg5_A           26 DLDIAVWLATVH--LEQYADTFRRHGLATAGAARGLGHEELKQLGISATGHRKRILRLLQTGTEEG   89 (100)
T ss_dssp             TCBHHHHHGGGT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHTTTTTCC
T ss_pred             cChHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCChhHHHHHHHHHHHHHhcc
Confidence            358999999997  99999999754 45599999999999999999 5799999999999988654

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=98.17  E-value=1.8e-06  Score=57.53  Aligned_cols=59  Identities=22%  Similarity=0.261  Sum_probs=51.3

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhH
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTH   93 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~e   93 (109)
                      +....+|.+||..||  +++|.+.|... +.+++.|..++-..|+++|| ++-+||.||+-.+
T Consensus        20 ~~~~~~V~~WL~~lg--L~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~aiq   80 (82)
T 3hil_A           20 GIPYRTVSEWLESIR--MKRYILHFHSAGLDTMECVLELTAEDLTQMGITLPGHQKRILCSIQ   80 (82)
T ss_dssp             CCCCSSHHHHHHHTT--CGGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHhCC--HHHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCCHHHHHHHHHHHH
Confidence            444569999999998  99999999754 46699999999999999999 6799999998765

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=1.3e-06  Score=56.82  Aligned_cols=65  Identities=22%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             CccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHH--hhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           32 QYIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRL--LVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~L--f~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      |+....+|.++|..||  +++|.+.|... +.+++.|  ..++...|+++|| .+-+||.||+-.+++|..
T Consensus         8 ~~~~~~~V~~WL~~lg--L~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~~ghR~kIl~ai~~L~~~   76 (80)
T 2eam_A            8 PRCPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPSG   76 (80)
T ss_dssp             CCCCCCCHHHHHHHHT--CGGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCCHHHHHHHHHHHHHSCCC
T ss_pred             CCCChhHHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence            4555679999999998  99999999763 2445555  5999999999999 589999999999988753

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=1.9e-06  Score=58.93  Aligned_cols=61  Identities=16%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-+|.++|..||  +.+|.+.|.. .+.+++.+..++...|+++|| .+.+||.||+-.+..|.-
T Consensus        23 ~~sV~eWL~~ig--L~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai~~lr~~   85 (97)
T 2dl0_A           23 ISSVSDWLISIG--LPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLP   85 (97)
T ss_dssp             CCSHHHHHHHHT--CGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHHHTCCCC
T ss_pred             cCcHHHHHHHCC--CHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHHHHHHcc
Confidence            569999999998  9999999954 456799999999999999999 699999999999888754

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=98.01  E-value=6.3e-06  Score=52.78  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      .-+|.+||..++-|+.+|++.|.. .| |-+.|+.++...||++|| ..-+|+-|++..++.|.
T Consensus         8 ~~~V~~WL~~~~~gl~~y~~~F~~~~I-~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~   70 (78)
T 3bs7_A            8 VSDVLKWYRRHCGEYTQYEQLFAQHDI-TGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRL   70 (78)
T ss_dssp             HHHHHHHHHHHSGGGGGGHHHHHHTTC-CHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHCCC-CHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHh
Confidence            458999999973339999999964 34 238999999999999999 79999999999998875

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.00  E-value=6.9e-06  Score=54.79  Aligned_cols=61  Identities=21%  Similarity=0.280  Sum_probs=55.0

Q ss_pred             cCCHHHHHhhhccch--hHHHHhhhhhhhhHHHHhhhchHHHHh--cCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGV--ETHSAKLESEIGDFQRLLVTRTLKLKK--LGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~--~eha~Kfes~~gdw~~Lf~~~S~~LKe--lGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-||.++|..||  +  .+|++.|...-=|-+.|+.++...||+  +|| ..-+|+.||+..++.|..
T Consensus        22 ~~dV~~WL~~~g--l~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~   87 (91)
T 1v85_A           22 TEEVVLWLEQLG--PWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSG   87 (91)
T ss_dssp             HHHHHHHHHHHC--GGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC--CCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Confidence            578999999998  7  999999977666789999999999999  999 789999999999998864

>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}

Probab=97.99  E-value=6.5e-06  Score=55.54  Aligned_cols=66  Identities=20%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             CccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhcc
Q 033920           32 QYIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~Gl   99 (109)
                      ||.....|.++|..||  |..+.|-|.++= ..++.+..++.+.|+.+||+..+||.||+-.+.+|...
T Consensus         2 ~~~~~~SV~~WLd~i~--m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~mGIt~gHqkkIl~siq~lr~~~   68 (82)
T 2y9t_A            2 SYPTDCSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDHRQLH   68 (82)
T ss_dssp             CSCCSSBHHHHHHHHT--CGGGHHHHHTTTCCBSGGGTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcC--chHHHHHHHHcCCCcHHHHHhcCHHHHHhcCCChhhHHHHHhhHHHHHHHh
Confidence            7788889999999998  999999998643 78999999999999999999999999999998888754

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=97.96  E-value=3.7e-06  Score=57.45  Aligned_cols=60  Identities=22%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHH--hhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRL--LVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~L--f~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      .-+|.++|..||  +++|.+.|... +.+.+-+  ..++...||++|| .+-+||.||+-.++.|.
T Consensus        22 ~~~V~~WL~~ig--L~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~~~GhRkkIl~ai~~L~~   85 (103)
T 2ke7_A           22 VQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPK   85 (103)
T ss_dssp             -CCTTHHHHHTT--CTTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCCCHHHHHHHHHHHHHSCC
T ss_pred             HhHHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCCCHHHHHHHHHHHHHHHh
Confidence            458999999998  99999999653 3455556  5999999999999 58999999999999985

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=97.95  E-value=9.9e-06  Score=55.70  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~   97 (109)
                      ..||+++|+.+|  +++|++.|++  -+|+.+.+++-++|+++||. .-+||.||.-.++.|.
T Consensus        18 ~~~V~~WL~sLr--LhKY~~~F~~--~~~~~l~~LtdedL~~~GVta~GaRrKil~aI~~lr~   76 (88)
T 2d3d_A           18 LKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID   76 (88)
T ss_dssp             HTCHHHHHHHTT--CGGGHHHHTT--SCHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHcc--cchhHHHHhc--CCHHHHHHcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence            469999999998  9999999998  59999999999999999995 9999999988887764

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=97.92  E-value=1.1e-05  Score=58.31  Aligned_cols=59  Identities=17%  Similarity=0.186  Sum_probs=52.9

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      .+|.+||..||  +++|.+.|.+.- .+++.|..++...|+++|| .+-+||.||+..+..|.
T Consensus        80 ~~v~~WL~~ig--L~qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~~gHr~kIl~ai~~l~~  140 (149)
T 3sei_A           80 ANLAVWLSMIG--LAQYYKVLVDNGYENIDFITDITWEDLQEIGITKLGHQKKLMLAVRKLAE  140 (149)
T ss_dssp             SCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHcC--chhhHHHHHHCCCchHHHHhhCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            48999999997  999999998644 5699999999999999999 69999999999987764

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=97.90  E-value=1.2e-05  Score=55.50  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-+|.+||..|+.|+.+|++.|... |.. +.|+.++...||++|| ..-+|+.||+..++.|.-
T Consensus        28 ~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G-~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~   91 (106)
T 3bs5_A           28 VSDVLKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQRMGVTDNRDREAIWREIVKQRLK   91 (106)
T ss_dssp             HHHHHHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHcCccH-HHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            5689999999943499999999654 532 8999999999999999 789999999999998863

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=5e-06  Score=56.59  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=52.3

Q ss_pred             cCCHHHHHhhhccchhH--HHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVET--HSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~e--ha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-+|.+||..||  +.+  |++.|...-=|-+.|+.++...||++|| ..-+|+.|++..++.|+-
T Consensus        32 ~~~V~~WL~~lg--l~~~~y~~~F~~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~~   95 (103)
T 2e8o_A           32 PEQVCSFLRRGG--FEEPVLLKNIRENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQI   95 (103)
T ss_dssp             HHHHHHHHHHHT--CCCHHHHHHHHHTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC--CChHHHHHHHHHcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence            578999999997  777  9999965332335899999999999999 899999999999999864

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=97.82  E-value=1.4e-05  Score=57.71  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=58.1

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR  103 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~  103 (109)
                      +....+|.+||..||  +++|.+.|...-=|++.|..++...|+++|| .+-+||.||+-.+.++.-.+-|.
T Consensus         7 ~~~~~~V~~WL~~lg--L~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~~gHrkkil~ai~~L~~~~~~~~   76 (149)
T 3sei_A            7 GKSSEAVSQWLTAFQ--LQLYAPNFISAGYDLPTISRMTPEDLTAIGVTKPGHRKKIAAEISGLSIPDWLPE   76 (149)
T ss_dssp             HHHHHHHHHHHHTTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCSHHHHHHHHHHHHTCCCCCCSCS
T ss_pred             cCcHHHHHHHHHHCC--cHHHHHHHHHcCCCHHHHccCCHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCC
Confidence            344568999999998  9999999986444599999999999999999 78899999999999887654343

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=97.78  E-value=2.9e-05  Score=53.19  Aligned_cols=62  Identities=16%  Similarity=0.179  Sum_probs=55.1

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHh--cCC-CchhhhHHhhhhHhhhhccccc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKK--LGI-PCKHRKLILKHTHKYRLGLWRP  102 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKe--lGI-p~r~RKyIL~~~ekyR~Gl~~P  102 (109)
                      .-||.++|+.+|  +.+|++.|++ | |  +.|+.++...||+  +|| ..-+|+.|++-.++.|+.-..+
T Consensus        22 ~edV~~WL~~~G--l~~Y~~~F~~-IdG--~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~~~~   87 (97)
T 2d8c_A           22 PKKVADWLLENA--MPEYCEPLEH-FTG--QDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEHHME   87 (97)
T ss_dssp             TTHHHHHHHHTT--CTTTTTTTTT-CCH--HHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHcC--CHHHHHHHHc-CCC--HHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            568999999997  9999999976 6 5  4899999999999  999 8999999999999999876544

>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A

Probab=97.74  E-value=2.6e-05  Score=54.99  Aligned_cols=58  Identities=21%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~   97 (109)
                      ..||+++|+.+|  +.+|++.|++  -+|+.+.+++-++|+++||. .-.||.||.-.++.|.
T Consensus        31 ~~dV~~WLksLr--LhKY~~~F~~--~~~~~l~~LTdedL~~~GVta~GARrKiL~aI~~Lr~   89 (101)
T 2es6_A           31 LKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID   89 (101)
T ss_dssp             HTCHHHHHHTTT--CCCTHHHHTT--SCHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHcc--CcchHHHHcc--CCHHHHHhcCHHHHHHcCCccHhHHHHHHHHHHHHHH
Confidence            479999999998  9999999998  59999999999999999995 8999999988777664

>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A

Probab=97.71  E-value=2.5e-05  Score=52.46  Aligned_cols=62  Identities=15%  Similarity=0.151  Sum_probs=52.8

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHH-HhcCCCchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKL-KKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~L-KelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      +-||.+||..+ .||.+|++.|...-=|-+.|+.++...| |++||+.-.|+.|+...++.|+.
T Consensus        19 ~edV~~wL~~l-~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgIklG~r~kI~~~I~~L~~~   81 (89)
T 1kw4_A           19 VDDVSNFIREL-PGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIKEV   81 (89)
T ss_dssp             HHHHHHHHHTS-TTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHC-cChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            56899999999 2399999999765445678999999999 89999999999999999998864

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=97.69  E-value=5e-05  Score=54.65  Aligned_cols=59  Identities=20%  Similarity=0.217  Sum_probs=52.4

Q ss_pred             ccCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCC-chhhhHHhhhhHhhhh
Q 033920           35 VKVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIP-CKHRKLILKHTHKYRL   97 (109)
Q Consensus        35 ~~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp-~r~RKyIL~~~ekyR~   97 (109)
                      ..-||.++|+.+|  +++|++.|++  -+|+.|.+++-..|+++||. .-+||.||...++.|.
T Consensus        48 ~~~dV~~WL~sLr--L~KY~~~F~~--~~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~~Lr~  107 (119)
T 2b6g_A           48 LLKNIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEKKGVLALGARRKLLKAFGIVID  107 (119)
T ss_dssp             HHHCHHHHHHHHT--CHHHHHHHTT--SCHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHCC--ChhHHHHHcc--CCHHHHHhcCHHHHHHCCCCccccHHHHHHHHHHHHh
Confidence            3579999999998  9999999976  59999999999999999995 9999999887776654

>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A

Probab=97.65  E-value=6.6e-05  Score=48.99  Aligned_cols=61  Identities=20%  Similarity=0.170  Sum_probs=54.5

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      ...|.++|..||  |..+.|-|.++= ..++.+..++.+.|+.+||+..+||.||+-.+.+|..
T Consensus         4 d~sv~~WLd~i~--m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~~GIt~ghqkkIl~siq~lr~~   65 (69)
T 2y9u_A            4 DCSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDHRQL   65 (69)
T ss_dssp             CCBHHHHHHTTT--CGGGHHHHHTTTCCBHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHcC--ChHHHHHHHHcCCCcHHHHHHcCHHHHHhcCCChhhHHHHHHhHHHHHhc
Confidence            457999999998  999999998643 7899999999999999999999999999988887753

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=97.49  E-value=6e-05  Score=53.91  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CccccCCHHHHHhhhccchhHHHHhhhhhh-hhHHHHh--hhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           32 QYIVKVGIPEFLNGIGKGVETHSAKLESEI-GDFQRLL--VTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~~-gdw~~Lf--~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      |-....+|.++|..||  +++|.+.|.+.= .+++-+.  .++...|+++|| .+-+||.||+-.+.+|.-
T Consensus        10 ~~~~~~~V~~WL~~ig--L~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~~ghRkkil~ai~~L~~~   78 (148)
T 2kiv_A           10 PRGSVQTVGQWLESIG--LPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGILNSGHRQRILQAIQLLPKM   78 (148)
T ss_dssp             ----CCBHHHHHHHHS--CTTSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSSTTSHHHHHHHHHHCSCC
T ss_pred             CCCCcchHHHHHHHCC--CHHHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCCHHHHHHHHHHHHHHHHh
Confidence            3444568999999998  999999997533 4445554  899999999999 589999999999998864

>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=97.43  E-value=7.2e-05  Score=50.63  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR  103 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~  103 (109)
                      .-+|.++|..|.-++.+|  .|.. .| +-+.|+.++...||++|| .+-+|+.||+-.++.|+-.++-.
T Consensus        16 ~~~V~~WL~~l~~~l~~Y--~F~~~~I-~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~~~l~   82 (91)
T 1wwv_A           16 PGKVATWLRGLDDSLQDY--PFEDWQL-PGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSSRLQ   82 (91)
T ss_dssp             TTTHHHHHHHHCHHHHTS--CHHHHCC-CHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHhcCCccccc--cHHhcCc-cHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHhhccc
Confidence            569999999886668888  6754 34 368999999999999999 89999999999999998776543

>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13

Probab=97.39  E-value=0.00017  Score=54.98  Aligned_cols=58  Identities=12%  Similarity=0.181  Sum_probs=53.7

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      .||+++|+.+|  +++|++.|.+  -+|+.+.+++-..|+++||..-+||-||.-.+++|..
T Consensus         8 ~dV~~WLksLr--LhKY~~~F~~--~~~e~~~~LTdedL~~~GVT~GARrKIL~aIq~Lrer   65 (173)
T 1oxj_A            8 SGIGLWLKSLR--LHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKER   65 (173)
T ss_dssp             TTHHHHHHHTT--CGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHcc--cchhHHHHcc--CCHHHHHhcCHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence            39999999998  9999999998  6899999999999999999889999999998888853

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=97.30  E-value=0.00025  Score=50.69  Aligned_cols=58  Identities=21%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             cccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhH
Q 033920           34 IVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTH   93 (109)
Q Consensus        34 ~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~e   93 (109)
                      ....+|.++|..||  +++|++.|.+. +.+++.|..++...| +++|| .+.+||.||+-.+
T Consensus        86 ~~~~~v~~WL~~i~--L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~  146 (148)
T 2kiv_A           86 AHPTSVAEWLDSIE--LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLG  146 (148)
T ss_dssp             CCCSSHHHHHHTTT--CCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHCC--cHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHh
Confidence            33469999999998  99999999764 357999999999996 99999 6999999997653

>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A

Probab=96.74  E-value=0.0018  Score=43.54  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=51.4

Q ss_pred             ccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHH-HhcCCCchhhhHHhhhhHhhhhc
Q 033920           35 VKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKL-KKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        35 ~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~L-KelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      .+-||.+||+.+..||.+|++.|.. +| |=+.|+.++...| +.+||..-.+.-|....++.|.+
T Consensus        18 svedV~~wl~~~~~g~~~y~~~F~~~eI-DG~aLL~Lt~~dl~~~mgiklGpalKi~~~I~~lk~~   82 (89)
T 1pk1_B           18 TIEEVIQYIESNDNSLAVHGDLFRKHEI-DGKALLRLNSERMMKYMGLKLGPALKICNLVNKVNGR   82 (89)
T ss_dssp             CHHHHHHHHHHHCGGGGGGHHHHHHTTC-CHHHHHTCCHHHHHHHSCCCHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHccchHHHHHHHHHcCc-ChHHHhcCCHHHHHHccCCCccHHHHHHHHHHHHHcc
Confidence            3679999999996669999999964 34 3367999999976 67999999999999999998865

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=95.31  E-value=0.01  Score=47.12  Aligned_cols=68  Identities=22%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhHhhhhcccccCCC
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTHKYRLGLWRPRAA  105 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~ekyR~Gl~~P~g~  105 (109)
                      ..+|.+.|..||  +..|.+.|...+-|=..|+.++...| |++|| .+=+||.|+.-.+.++...+.+-|+
T Consensus        20 ~e~V~~WLe~~G--L~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~~~~~~~~   89 (265)
T 3tad_C           20 KEQVCSWLAEQG--LGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNYGK   89 (265)
T ss_dssp             HHHHHHHHHHTT--CCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHCSCCSGGG
T ss_pred             hHHHHHHHHHHC--HHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhcccccccccc
Confidence            578999999998  77899999875644456999999999 59999 9999999999999999876654333

>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A

Probab=94.76  E-value=0.036  Score=37.71  Aligned_cols=65  Identities=22%  Similarity=0.311  Sum_probs=41.9

Q ss_pred             CccccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920           32 QYIVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        32 p~~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      ||...+.|..||+++|  |...+|-|.+. +-+.-.|=+.+=+.|-.+.||-++|--|-+=.-.||++
T Consensus         2 py~~D~Sv~s~Lt~LG--c~~~Id~F~~qgl~~i~qL~~~~ledL~~mkIpe~~R~kIWk~l~e~~q~   67 (80)
T 1dxs_A            2 SYHADPSLVSFLTGLG--CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQDLKQG   67 (80)
T ss_dssp             ------CHHHHHHHTT--CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHHC---
T ss_pred             CCCCCccHHHHHHhcC--chHHHHHHHHcCcccchhhccCCHHHHHhCCCCHHHHHHHHhhHHHhccc
Confidence            7889999999999999  99999998761 12233344567788889999988886665555555544

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.51  E-value=0.027  Score=38.59  Aligned_cols=61  Identities=18%  Similarity=0.127  Sum_probs=49.5

Q ss_pred             cCCHHHHHhhhccchhHH-HHhhhhhhhhHHHHhhhchHHHHh-cCCCchhhhHHhhhhHhhhhcccccC
Q 033920           36 KVGIPEFLNGIGKGVETH-SAKLESEIGDFQRLLVTRTLKLKK-LGIPCKHRKLILKHTHKYRLGLWRPR  103 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eh-a~Kfes~~gdw~~Lf~~~S~~LKe-lGIp~r~RKyIL~~~ekyR~Gl~~P~  103 (109)
                      +-+|.++|+.||  +.++ +++|+.+==|=+-|++++...|++ +|+..-|+|.|+...+    | |.|.
T Consensus        20 v~EVs~~Lr~ig--L~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~ls~Lq~kKi~~fI~----G-WrPk   82 (84)
T 2dkz_A           20 IEEVSKSLRFIG--LSEDVISFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKIMQFIN----G-SGPS   82 (84)
T ss_dssp             HHHHHHHGGGTC--CCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCCCHHHHHHHHHHHH----C-CCTT
T ss_pred             HHHHHHHHHHcC--CcHHHHHHHHHHccchHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh----c-CCCC
Confidence            678999999998  8875 699987654445688999999976 9999999999997763    3 5664

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=93.84  E-value=0.1  Score=41.45  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=56.9

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcccccC
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRPR  103 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P~  103 (109)
                      ..|.+||..||  ..+|.+.|.+.--|-.-|-.++-..|+++|| .+-+|+.|++-....|..-|-|.
T Consensus        93 ~wv~~WL~~IG--L~QY~~~F~~~~iDg~~L~~LT~~DL~~LGIt~~~HR~kil~aI~~L~~~~~d~~  158 (265)
T 3tad_C           93 NWVTRWLDDIG--LPQYKTQFDEGRVDGRMLHYMTVDDLLSLKVVSVLHHLSIKRAIQVLRINNFEPN  158 (265)
T ss_dssp             HHHHHHHHHHT--CGGGHHHHHHHTCCHHHHHTCBHHHHHHTTCCBHHHHHHHHHHHHHHHHTTTCTT
T ss_pred             HHHHHHHHHcC--cHHHHHHHHHcCCCHHHhcccCHHHHHHcCCCcHHhHHHHHHHHHHHhhcCCCHH
Confidence            36789999999  9999999997556778888999999999999 79999999999999888776654

>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A

Probab=85.18  E-value=0.83  Score=37.66  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=49.7

Q ss_pred             cCCHHHHHhh-hccchhH-HHHhhhhhhhhHHHHhhhchHHH-HhcCC-CchhhhHHhhhhHhhh
Q 033920           36 KVGIPEFLNG-IGKGVET-HSAKLESEIGDFQRLLVTRTLKL-KKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        36 ~~dV~tFL~~-IGRg~~e-ha~Kfes~~gdw~~Lf~~~S~~L-KelGI-p~r~RKyIL~~~ekyR   96 (109)
                      ..+|.+.|.. ||  +.. |.+.|..-+-+=.-|+.++...| |++|| .+=+||.|+.-.+.++
T Consensus        41 ~~~V~aWLe~~iG--mp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~  103 (334)
T 3tac_B           41 GPTVVAWLELWLG--MPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMV  103 (334)
T ss_dssp             HHHHHHHHHHTTC--CCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhc--ChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            4689999998 77  876 88888886644466889999999 69999 9999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1dxsa_	57	a.60.1.2 (A:) C-terminal domain of p73 {Human (Hom	0.004

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.3 bits (71), Expect = 0.004
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 39 IPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILK 90
          +  FL G+G             +     L       L  L IP ++R  I +
Sbjct: 2  LVSFLTGLGCP-NCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWR 52

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	98.93
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	98.76
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	98.73
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	98.71
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	98.68
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	98.61
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	98.46
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	98.37
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	98.15
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	98.11
d2d8ca1	85	Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculu	98.07
d1pk3a1	63	Polycomb protein Scm {Fruit fly (Drosophila melano	97.65
d1kw4a_	70	Polyhomeotic {Drosophila melanogaster [TaxId: 7227	97.6
d1rg6a_	67	C-terminal domain of p63 {Human (Homo sapiens) [Ta	94.4

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=3.7e-10  Score=69.17  Aligned_cols=58  Identities=17%  Similarity=0.196  Sum_probs=53.0

Q ss_pred             CCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR   96 (109)
                      |+|++||..||  +++|++.|.+ ..-|++.|..++...|+++|| +.-+|+.||+-.++.|
T Consensus         1 p~V~~wL~~lg--L~~Y~~~F~~~~~i~~~~l~~l~~~dL~~lGI~~~ghr~ril~~i~~Lk   60 (60)
T d1ow5a_           1 PFVQLFLEEIG--CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSFQ   60 (60)
T ss_dssp             CHHHHHHHHHS--CTHHHHHHHHHTCCCHHHHHHCCHHHHHHHTCCCHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHCc--CHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            78999999998  9999999976 357899999999999999999 7799999999988765

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.7e-09  Score=68.28  Aligned_cols=65  Identities=26%  Similarity=0.324  Sum_probs=58.3

Q ss_pred             cCCHHHHHhhhccchhHHHHhhh-hhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccccc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLE-SEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLWRP  102 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfe-s~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~~P  102 (109)
                      ..||.+||..||  |++|++.|. +.+.+++.|..++...|+++|| ++.+|+.||+-.++.|++.-.|
T Consensus         8 ~~dV~~WL~~lg--L~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~ghr~kil~~i~~Lr~~~~~~   74 (78)
T d1x40a1           8 NVDIKDFLMSIN--LEQYLLHFHESGFTTVKDCAAINDSLLQKIGISPTGHRRRILKQLQIILSKMQDI   74 (78)
T ss_dssp             CCBHHHHHHTTT--CGGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHCCCC
T ss_pred             ChhHHHHHHHCc--hHHHHHHHHHcCCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhCcCC
Confidence            458999999998  999999996 4457899999999999999999 7899999999999999986544

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=8.6e-09  Score=65.49  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=57.1

Q ss_pred             cccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhcc
Q 033920           34 IVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGL   99 (109)
Q Consensus        34 ~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl   99 (109)
                      ....+|.+||+.||  +++|++.|... |.+++.|..++...|+++|| ++-+|+.||+..++.+.+.
T Consensus        10 ~~~~~V~~WL~~lg--L~~Y~~~F~~~g~~~~~~l~~l~~~dL~~lGI~~~~hr~kil~ai~~L~~~~   75 (78)
T d1v38a_          10 ENHQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAESLLSGP   75 (78)
T ss_dssp             SSCCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHHCC--HHHHHHHHHHcCccchHHHccCCHHHHhHcCCCCHHHHHHHHHHHHHhhcCC
Confidence            34569999999998  99999999764 67899999999999999999 8999999999999988753

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=7.7e-09  Score=64.86  Aligned_cols=63  Identities=16%  Similarity=0.328  Sum_probs=55.8

Q ss_pred             ccccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           33 YIVKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        33 ~~~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      |..+.+|.++|+.||  +++|++.|.. .+.+.+.|..++...|+++|| ++-+||.|++-.+..|.
T Consensus         1 ~s~v~sV~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~l~~~dL~~lGI~~~ghr~ki~~ai~~Lr~   65 (72)
T d1b0xa_           1 FSAVVSVGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRT   65 (72)
T ss_dssp             CCSSCCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHCC--cHHHHHHHHHcCCCcHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            345679999999997  9999999966 457789999999999999999 88999999999888774

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.5e-09  Score=63.53  Aligned_cols=55  Identities=22%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             CHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHh
Q 033920           38 GIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHK   94 (109)
Q Consensus        38 dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ek   94 (109)
                      .|.+||+.||  +++|++.|.++ +.+++.+..++...|+++|||..+||.||+-.+.
T Consensus         1 Sv~~wL~~lg--L~~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~~~hr~kilk~i~~   56 (57)
T d1dxsa_           1 SLVSFLTGLG--CPNCIEYFTSQGLQSIYHLQNLTIEDLGALKIPEQYRMTIWRGLQD   56 (57)
T ss_dssp             CHHHHHHHTT--CTTSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred             CHHHHHHHCC--cHHHHHHHHHccCCcHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHh
Confidence            4899999998  99999999986 5789999999999999999999999999997754

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.61  E-value=2e-08  Score=62.49  Aligned_cols=58  Identities=12%  Similarity=0.178  Sum_probs=53.1

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCCCchhhhHHhhhhHhhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGIPCKHRKLILKHTHKYRL   97 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGIp~r~RKyIL~~~ekyR~   97 (109)
                      +.||.+||+.||  +++|++.|++  -+++.|..++...|+++||+.=+||.||+-.++.|+
T Consensus         5 ~~~v~~WL~~l~--L~~Y~~~F~~--~~~d~l~~lt~~dL~~lGI~~GhRkkil~~I~~Lke   62 (62)
T d1oxja1           5 MSGIGLWLKSLR--LHKYIELFKN--MTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKE   62 (62)
T ss_dssp             CTTHHHHHHHTT--CGGGGGGGTT--CCHHHHTTCCHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHCC--cHHHHHHHHh--CCHHHHHhCCHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence            348999999998  9999999987  678999999999999999988999999999988874

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.3e-08  Score=61.30  Aligned_cols=62  Identities=18%  Similarity=0.281  Sum_probs=55.5

Q ss_pred             ccCCHHHHHhhhccchhHHHHhhhh-hhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhc
Q 033920           35 VKVGIPEFLNGIGKGVETHSAKLES-EIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        35 ~~~dV~tFL~~IGRg~~eha~Kfes-~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      ...+|.++|+.||  +++|++.|.. .|.+++.|..++...|+++|| +.-+|+.||+-.+..|.-
T Consensus         6 ~~~sV~~WL~~lg--L~qY~~~F~~~gi~~~~~L~~lt~~dL~~lGI~~~ghr~kIl~~i~~Lk~~   69 (81)
T d1ucva_           6 SGLTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQ   69 (81)
T ss_dssp             CCSBHHHHHHHTT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHCc--cHHHHHHHHHcCCchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3568999999998  9999999976 457899999999999999999 789999999999988764

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.4e-07  Score=57.93  Aligned_cols=62  Identities=16%  Similarity=0.228  Sum_probs=55.3

Q ss_pred             cccCCHHHHHhhhccchhHHHHhhhhh-hhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhh
Q 033920           34 IVKVGIPEFLNGIGKGVETHSAKLESE-IGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRL   97 (109)
Q Consensus        34 ~~~~dV~tFL~~IGRg~~eha~Kfes~-~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~   97 (109)
                      ...-+|.++|+.||  +++|++.|.+. |.+++.|..++...|+++|| +.-+|+.|++-.++.|.
T Consensus         4 ~~~~~V~~WL~~lg--L~~Y~~~F~~~~idg~~~l~~l~~~~L~~lGI~~~ghr~ril~~i~~Lr~   67 (74)
T d1b4fa_           4 TSFNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSIQVMRA   67 (74)
T ss_dssp             CCCSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHCC--CHHHHHHHHHcCcCcHHHHHhCCHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence            34458999999998  99999999875 46689999999999999999 88999999999998875

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=7.5e-07  Score=53.75  Aligned_cols=56  Identities=18%  Similarity=0.277  Sum_probs=49.0

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHK   94 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ek   94 (109)
                      .||.+||..+|  +.+|++.|.+.-=|-+.|+.++...|+++|| ++-+|+.|++..++
T Consensus         7 ~~V~~wL~~~g--l~~y~~~F~~~~i~g~~L~~l~~~dL~~lGi~~~g~r~~il~~i~~   63 (64)
T d2f3na1           7 FDVGDWLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRENIERALRQ   63 (64)
T ss_dssp             HHHHHHHHHTT--CGGGHHHHHHTTCCGGGGGGCCHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHCCCcHHHhhcCCHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            48999999997  9999999987433568999999999999999 88999999987754

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=8.9e-07  Score=55.64  Aligned_cols=63  Identities=17%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhhhccc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYRLGLW  100 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR~Gl~  100 (109)
                      ..+|.+||..+|  +++|+++|...-=|=+.|+.++...|+++|| +.-+|+.||+-.+++|..-.
T Consensus         9 ~~~V~~WL~~~g--l~~y~~~F~~~~I~G~~Ll~L~~~dL~~lgI~~~ghr~~il~~i~~Lk~~~~   72 (78)
T d1wwva1           9 PGKVATWLRGLD--DSLQDYPFEDWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALSS   72 (78)
T ss_dssp             TTTHHHHHHHHC--HHHHTSCHHHHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcc--hHHHHHHHHHcCCCcHHHHHhhHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence            469999999997  9999999997543458999999999999999 89999999999999987543

>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sphingomyelin synthase 1, SMS1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.3e-06  Score=56.88  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=52.9

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHh--cCC-CchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKK--LGI-PCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKe--lGI-p~r~RKyIL~~~ekyR~G   98 (109)
                      .-||.+||..+|  +.+|++.|. .| |-+.|+.++...|++  +|| ..-+||.||+..+..|.-
T Consensus        16 ~~dV~~WL~~~g--l~~Y~~~F~-~I-dG~~Ll~Lt~~dL~~~~Lgi~~~~~rk~il~~I~~Lk~~   77 (85)
T d2d8ca1          16 PKKVADWLLENA--MPEYCEPLE-HF-TGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKME   77 (85)
T ss_dssp             TTHHHHHHHHTT--CTTTTTTTT-TC-CHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCc--HHHHHHHHH-hc-cHHHHHHCCHHHHhhcCccCcChhHHHHHHHHHHHHHHH
Confidence            469999999998  999999995 46 679999999999999  899 788999999999988864

>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polycomb protein Scm
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=2.6e-05  Score=46.84  Aligned_cols=58  Identities=14%  Similarity=0.129  Sum_probs=50.8

Q ss_pred             CCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhc-CCCchhhhHHhhhhHh
Q 033920           37 VGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKL-GIPCKHRKLILKHTHK   94 (109)
Q Consensus        37 ~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKel-GIp~r~RKyIL~~~ek   94 (109)
                      -||.+||+.++.++++|++.|.+.-=|-+.|+.++...|++. |++.-+|+.|++-.++
T Consensus         4 ~dV~~wL~~~~~~~~~y~~~F~~~~IdG~~Ll~Lt~edL~~~~~~~~G~r~ki~~~I~~   62 (63)
T d1pk3a1           4 EEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNK   62 (63)
T ss_dssp             HHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccHHHHHHHHHHhCcCHHHHHhcCHHHHHHhcCCCchHHHHHHHHHHh
Confidence            489999999988899999999876667789999999999885 6699999999987664

>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Polyhomeotic
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.60  E-value=2.7e-05  Score=47.44  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=51.9

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHhhhchHHHHhcCC-CchhhhHHhhhhHhhh
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLLVTRTLKLKKLGI-PCKHRKLILKHTHKYR   96 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf~~~S~~LKelGI-p~r~RKyIL~~~ekyR   96 (109)
                      +.||..||..|| ++++|++.|...-=|-+.|+.++...|++.|+ +.-+|+.|++..+++|
T Consensus        10 ~~dV~~wL~~~~-~~~~y~~~F~~~~IdG~~Ll~Lt~~~L~~~~~~~~g~r~~i~~~I~~Lk   70 (70)
T d1kw4a_          10 VDDVSNFIRELP-GCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLGPALKIVAKVESIK   70 (70)
T ss_dssp             HHHHHHHHHTST-TCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHcCccHHHHHHccHHHHHHHcCCchHHHHHHHHHHHHhC
Confidence            679999999994 59999999976555678899999999999876 8889999999988765

>d1rg6a_ a.60.1.2 (A:) C-terminal domain of p63 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.016  Score=36.79  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=45.6

Q ss_pred             cCCHHHHHhhhccchhHHHHhhhhhhhhHHHHh---hhchHHHHhcCCCchhhhHHhhhhHhhhhc
Q 033920           36 KVGIPEFLNGIGKGVETHSAKLESEIGDFQRLL---VTRTLKLKKLGIPCKHRKLILKHTHKYRLG   98 (109)
Q Consensus        36 ~~dV~tFL~~IGRg~~eha~Kfes~~gdw~~Lf---~~~S~~LKelGIp~r~RKyIL~~~ekyR~G   98 (109)
                      .+.|..||+++|  |..+.|-|.+  -.+..++   +.+=+.|-++-||.++|--|-+-.-.||+.
T Consensus         3 D~Si~sfLt~LG--c~~~id~F~~--q~l~~v~qLe~~sleDL~~mkIp~~~r~~IWK~l~e~kq~   64 (67)
T d1rg6a_           3 DCSIVSFLARLG--CSSCLDYFTT--QGLTTIYQIEHYSMDDLASLKIPEQFRHAIWKGILDHRQL   64 (67)
T ss_dssp             CCSHHHHHHHTT--CCSSHHHHHH--HTCCSGGGGSSCCHHHHHTTTCCTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHhcC--hHHHHHHHHH--ccchhHHHHhhcCHHHHHcCcCcHHHHHHHHHHHHHHHHh
Confidence            568999999998  9999999987  2233333   445567778889999999888877777764