Citrus Sinensis ID: 033935

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTLG
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEEEEEEcccHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFnfannlhiwdtllsdpdgpqeTLLRVCCAMLILIRRRLLAgdftsnlkllqnyppisiRHLLCVANKLRTLG
Flexible Loop (DISEMBL)
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLlqnyppisirhLLCVANKLRTLG
Low Complexity Region (SEG)
MAvivvwvcevvkvWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMlilirrrllAGDFTSNLKLLQNYPPISIRHLLCVANKLRTLG
Disordered region (IsUnstruct)
**VIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKL****
Disordered Region (DISOPRED)
*AVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTLG
Disordered Region (DISEMBL)
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTLG
Disordered Region (DISPRO)
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTL*
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVIVVWVCEVVKVWLLAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q9NVG8	400	TBC1 domain family member	yes	no	0.722	0.195	0.506	1e-15
Q8R3D1	400	TBC1 domain family member	yes	no	0.722	0.195	0.506	4e-15
Q9URY3	619	TBC domain-containing pro	yes	no	0.75	0.130	0.287	7e-07
Q54TA5	1016	TBC1 domain family member	no	no	0.657	0.069	0.358	4e-06
Q95LL3	505	TBC1 domain family member	N/A	no	0.611	0.130	0.402	1e-05
Q9NU19	505	TBC1 domain family member	no	no	0.611	0.130	0.402	1e-05
Q8WUA7	517	TBC1 domain family member	no	no	0.592	0.123	0.384	4e-05
Q8R5A6	516	TBC1 domain family member	no	no	0.592	0.124	0.384	5e-05
Q95KI1	497	TBC1 domain family member	N/A	no	0.592	0.128	0.369	0.0002
Q54VM3	1173	TBC1 domain family member	no	no	0.574	0.052	0.312	0.0004

>sp|Q9NVG8|TBC13_HUMAN TBC1 domain family member 13 OS=Homo sapiens GN=TBC1D13 PE=1 SV=3

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           W+TLLL+QEF   + + IWD+L +D D   + LL VCCAML+LIR +LL GDFT N++LL
Sbjct: 320 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLL 378

Query: 87  QNYPPISIRHLLCVANKLR 105
           Q+YP   +  +L  A +L+
Sbjct: 379 QDYPITDVCQILQKAKELQ 397

May act as a GTPase-activating protein for Rab family protein(s).
Homo sapiens (taxid: 9606)

>sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13 OS=Mus musculus GN=Tbc1d13 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/79 (50%), Positives = 56/79 (70%), Gaps = 1/79 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           W+TLLL+QEF   + + IWD+L +D +   + LL VCCAMLILIR +LL GDFT N++LL
Sbjct: 320 WLTLLLSQEFLLPDVIRIWDSLFADGN-RFDFLLLVCCAMLILIREQLLEGDFTVNMRLL 378

Query: 87  QNYPPISIRHLLCVANKLR 105
           Q+YP   +  +L  A +L+
Sbjct: 379 QDYPITDVCQILQKAKELQ 397

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q9URY3|YLOH_SCHPO TBC domain-containing protein C1952.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1952.17c PE=4 SV=4

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 13/94 (13%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDP-------------DGPQETLLRVCCAMLILIRRR 73
           W T LL+QEF   + + +WD++++D              +G  + L+  CC++LI +R  
Sbjct: 362 WFTCLLSQEFPLPDVIRLWDSIIADQMKARLFGKNDDGFNGAYDFLMDFCCSILIELRES 421

Query: 74  LLAGDFTSNLKLLQNYPPISIRHLLCVANKLRTL 107
           +L  +F  ++KLLQ +  + +  LL +  +L+ L
Sbjct: 422 ILERNFADSIKLLQAHFNVDMPKLLNLTFELQHL 455

May act as a GTPase-activating protein for Rab family protein(s).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54TA5|TBC5B_DICDI TBC1 domain family member 5 homolog B OS=Dictyostelium discoideum GN=tbc1d5B PE=3 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 24  MIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRV---CCAMLILIRRRLLAGDFT 80
           ++ WI LL  +EF+F + L+IWD L +      E L+ +   C +ML  IR  LL  D  
Sbjct: 608 LLRWIRLLFGREFHFDDVLNIWDALFA----YGENLILIDYFCISMLTYIREHLLKSDSI 663

Query: 81  SNLKLLQNYPPISIRHLL 98
             LK +  YPP+   ++L
Sbjct: 664 YALKRIYKYPPVEDVYML 681

May act as a GTPase-activating protein for Rab family protein(s).

Dictyostelium discoideum (taxid: 44689)

>sp|Q95LL3|TB22B_MACFA TBC1 domain family member 22B OS=Macaca fascicularis GN=TBC1D22B PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
           W+  LL +E      + +WDT  S+P+G     L VC A LI  R+ +L   DF   L L
Sbjct: 409 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLML 468

Query: 86  LQNYPPI 92
           LQN P I
Sbjct: 469 LQNLPTI 475

May act as a GTPase-activating protein for Rab family protein(s).

Macaca fascicularis (taxid: 9541)

>sp|Q9NU19|TB22B_HUMAN TBC1 domain family member 22B OS=Homo sapiens GN=TBC1D22B PE=1 SV=3

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
           W+  LL +E      + +WDT  S+P+G     L VC A LI  R+ +L   DF   L L
Sbjct: 409 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLML 468

Query: 86  LQNYPPI 92
           LQN P I
Sbjct: 469 LQNLPTI 475

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q8WUA7|TB22A_HUMAN TBC1 domain family member 22A OS=Homo sapiens GN=TBC1D22A PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
           W+  LL +E      + +WDT  S+PDG     L VC A L+  R+ +L   DF   L  
Sbjct: 421 WMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 480

Query: 86  LQNYP 90
           LQN P
Sbjct: 481 LQNLP 485

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|Q8R5A6|TB22A_MOUSE TBC1 domain family member 22A OS=Mus musculus GN=Tbc1d22a PE=2 SV=3

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG-DFTSNLKL 85
           W+  LL +E      + +WDT  S+P+G     L VC A L+  RR +L   DF   L  
Sbjct: 420 WMNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLF 479

Query: 86  LQNYP 90
           LQN P
Sbjct: 480 LQNLP 484

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q95KI1|TB22A_MACFA TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis GN=TBC1D22A PE=2 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
           W+  LL +E      + +WDT  S+P+G     L VC A L+  R+ +L   DF   L  
Sbjct: 401 WMNNLLMREVPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 460

Query: 86  LQNYP 90
           LQN P
Sbjct: 461 LQNLP 465

May act as a GTPase-activating protein for Rab family protein(s).

Macaca fascicularis (taxid: 9541)

>sp|Q54VM3|TBC5A_DICDI TBC1 domain family member 5 homolog A OS=Dictyostelium discoideum GN=tbc1d5A PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WI ++L Q F   + L +WD++  +     E L  +C  MLI+I+ +++  D++  L++L
Sbjct: 704 WIRIILAQVFPLDSLLILWDSIFKE--SVTEFLPYICLTMLIMIKDQIIEKDYSECLQVL 761

Query: 87  QNYP 90
            +YP
Sbjct: 762 FHYP 765

May act as a GTPase-activating protein for Rab family protein(s).

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
334186501	438	RabGAP/TBC domain-containing protein [Ar	0.740	0.182	0.85	3e-36
297804944	452	RabGAP/TBC domain-containing protein [Ar	0.740	0.176	0.85	3e-36
15236337	449	RabGAP/TBC domain-containing protein [Ar	0.740	0.178	0.85	3e-36
115441721	368	Os01g0908100 [Oryza sativa Japonica Grou	0.722	0.211	0.871	4e-36
218189570	368	hypothetical protein OsI_04852 [Oryza sa	0.722	0.211	0.871	4e-36
225433604	437	PREDICTED: TBC1 domain family member 13	0.731	0.180	0.873	5e-36
255554050	468	conserved hypothetical protein [Ricinus	0.731	0.168	0.886	6e-36
242059607	367	hypothetical protein SORBIDRAFT_03g04324	0.731	0.215	0.860	1e-35
224128968	339	predicted protein [Populus trichocarpa]	0.731	0.233	0.873	2e-35
356512467	443	PREDICTED: TBC1 domain family member 13-	0.731	0.178	0.860	2e-35

>gi|334186501|ref|NP_001190721.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332657920|gb|AEE83320.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNF  +LHIWDTLLSDP+GPQETLLR+CCAMLIL+RRRLLAGDFTSNLKLL
Sbjct: 358 WITLLLTQEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLL 417

Query: 87  QNYPPISIRHLLCVANKLRT 106
           QNYPP +I H+L VA+KLRT
Sbjct: 418 QNYPPTNISHMLYVADKLRT 437

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804944|ref|XP_002870356.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297316192|gb|EFH46615.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNF  +LHIWDTLLSDP+GPQETLLR+CCAMLIL+RRRLLAGDFTSNLKLL
Sbjct: 372 WITLLLTQEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLL 431

Query: 87  QNYPPISIRHLLCVANKLRT 106
           QNYPP +I H+L VA+KLRT
Sbjct: 432 QNYPPTNISHMLYVADKLRT 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236337|ref|NP_193109.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|4455302|emb|CAB36837.1| putative protein [Arabidopsis thaliana] gi|7268077|emb|CAB78415.1| putative protein [Arabidopsis thaliana] gi|332657918|gb|AEE83318.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNF  +LHIWDTLLSDP+GPQETLLR+CCAMLIL+RRRLLAGDFTSNLKLL
Sbjct: 369 WITLLLTQEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLL 428

Query: 87  QNYPPISIRHLLCVANKLRT 106
           QNYPP +I H+L VA+KLRT
Sbjct: 429 QNYPPTNISHMLYVADKLRT 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441721|ref|NP_001045140.1| Os01g0908100 [Oryza sativa Japonica Group] gi|56785115|dbj|BAD82753.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|56785363|dbj|BAD82321.1| RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group] gi|113534671|dbj|BAF07054.1| Os01g0908100 [Oryza sativa Japonica Group] gi|215701486|dbj|BAG92910.1| unnamed protein product [Oryza sativa Japonica Group] gi|222619721|gb|EEE55853.1| hypothetical protein OsJ_04475 [Oryza sativa Japonica Group]

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/78 (87%), Positives = 74/78 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA+ +HIWDTLLSDPDGPQETLLR+CCAMLIL+R+RLLAGDFTSNLKLL
Sbjct: 290 WITLLLTQEFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLL 349

Query: 87  QNYPPISIRHLLCVANKL 104
           QNYPP +I HLL VANKL
Sbjct: 350 QNYPPTNISHLLYVANKL 367

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189570|gb|EEC71997.1| hypothetical protein OsI_04852 [Oryza sativa Indica Group]

 Score =  154 bits (390), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/78 (87%), Positives = 74/78 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA+ +HIWDTLLSDPDGPQETLLR+CCAMLIL+R+RLLAGDFTSNLKLL
Sbjct: 290 WITLLLTQEFNFADTIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLL 349

Query: 87  QNYPPISIRHLLCVANKL 104
           QNYPP +I HLL VANKL
Sbjct: 350 QNYPPTNISHLLYVANKL 367

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433604|ref|XP_002271213.1| PREDICTED: TBC1 domain family member 13 [Vitis vinifera] gi|298205157|emb|CBI17216.3| unnamed protein product [Vitis vinifera]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/79 (87%), Positives = 75/79 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA++LHIWDTLLSDP+GPQETLLR+CCAMLIL+RRRLLAGDFTSNLKLL
Sbjct: 354 WITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLL 413

Query: 87  QNYPPISIRHLLCVANKLR 105
           QNYP  +I HLL VANKLR
Sbjct: 414 QNYPSTNISHLLYVANKLR 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554050|ref|XP_002518065.1| conserved hypothetical protein [Ricinus communis] gi|223542661|gb|EEF44198.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (390), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/79 (88%), Positives = 75/79 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA++LHIWDTLLSDP+GPQETLLR+CC MLILIRRRLLAGDFTSNLKLL
Sbjct: 385 WITLLLTQEFNFADSLHIWDTLLSDPEGPQETLLRICCTMLILIRRRLLAGDFTSNLKLL 444

Query: 87  QNYPPISIRHLLCVANKLR 105
           QNYPP +I HLL VANKLR
Sbjct: 445 QNYPPTNISHLLYVANKLR 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059607|ref|XP_002458949.1| hypothetical protein SORBIDRAFT_03g043240 [Sorghum bicolor] gi|241930924|gb|EES04069.1| hypothetical protein SORBIDRAFT_03g043240 [Sorghum bicolor]

 Score =  153 bits (387), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA+ +HIWDTLLSDPDGPQETLLR+CCAMLIL+R+RLLAGDFTSNLKLL
Sbjct: 289 WITLLLTQEFNFADIIHIWDTLLSDPDGPQETLLRICCAMLILVRKRLLAGDFTSNLKLL 348

Query: 87  QNYPPISIRHLLCVANKLR 105
           QNYPP +I HLL VANKL+
Sbjct: 349 QNYPPTNISHLLYVANKLQ 367

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128968|ref|XP_002328857.1| predicted protein [Populus trichocarpa] gi|222839287|gb|EEE77624.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/79 (87%), Positives = 75/79 (94%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA+++HIWDTLLSDP+GPQETLLRVCCAMLIL+RRRLLAGDFTS LKLL
Sbjct: 256 WITLLLTQEFNFADSIHIWDTLLSDPEGPQETLLRVCCAMLILVRRRLLAGDFTSILKLL 315

Query: 87  QNYPPISIRHLLCVANKLR 105
           QNYPP +I HLL VANKLR
Sbjct: 316 QNYPPTNISHLLYVANKLR 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512467|ref|XP_003524940.1| PREDICTED: TBC1 domain family member 13-like isoform 1 [Glycine max]

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WITLLLTQEFNFA++LHIWDTLLSDPDGPQETLLRVCCAML+L+R+RLLAGDFTSNLKLL
Sbjct: 361 WITLLLTQEFNFADSLHIWDTLLSDPDGPQETLLRVCCAMLVLVRKRLLAGDFTSNLKLL 420

Query: 87  QNYPPISIRHLLCVANKLR 105
           QNYP  +I HLL VANK R
Sbjct: 421 QNYPTTNISHLLYVANKFR 439

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2119435	449	AT4G13730 [Arabidopsis thalian	0.740	0.178	0.75	5.6e-29
FB|FBgn0035916	403	GAPsec "GTPase activating prot	0.712	0.191	0.423	4.7e-12
UNIPROTKB|B3KW04	219	TBC1D13 "TBC1 domain family me	0.722	0.356	0.430	6.4e-12
UNIPROTKB|E2RQB4	400	TBC1D13 "Uncharacterized prote	0.722	0.195	0.430	3.5e-11
UNIPROTKB|Q9NVG8	400	TBC1D13 "TBC1 domain family me	0.722	0.195	0.430	3.5e-11
UNIPROTKB|F1RR65	400	TBC1D13 "Uncharacterized prote	0.722	0.195	0.430	3.5e-11
UNIPROTKB|J9NWF3	403	TBC1D13 "Uncharacterized prote	0.722	0.193	0.430	3.5e-11
UNIPROTKB|E1BXI8	399	TBC1D13 "Uncharacterized prote	0.648	0.175	0.486	4.5e-11
ZFIN|ZDB-GENE-080204-86	414	tbc1d13 "TBC1 domain family, m	0.629	0.164	0.5	6.2e-11
UNIPROTKB|F1MXD4	399	TBC1D13 "Uncharacterized prote	0.722	0.195	0.417	2e-10

TAIR|locus:2119435 AT4G13730 [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 60/80 (75%), Positives = 66/80 (82%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             WITLLLTQEFNF  +LHIWDTLLSDP+GPQETLLR+CCAM         AGDFTSNLKLL
Sbjct:   369 WITLLLTQEFNFVESLHIWDTLLSDPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLL 428

Query:    87 QNYPPISIRHLLCVANKLRT 106
             QNYPP +I H+L VA+KLRT
Sbjct:   429 QNYPPTNISHMLYVADKLRT 448

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

FB|FBgn0035916 GAPsec "GTPase activating protein, SECIS-dependent read-through" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 4.7e-12, P = 4.7e-12
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + L IWD++ +D +   + L+++CC+M           DF SN+KLL
Sbjct:   326 WLTLLLSQEFPLPDVLRIWDSVFAD-EQRFDFLIKICCSMILIQKEAILENDFASNVKLL 384

Query:    87 QNYPPISIRHLLCVANKL 104
             QNYPPI I  ++  A  L
Sbjct:   385 QNYPPIDINVVIAHAGSL 402

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001514 "selenocysteine incorporation" evidence=IDA

GO:0006451 "translational readthrough" evidence=IDA

UNIPROTKB|B3KW04 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   139 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLL 197

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   198 QDYPITDVCQILQKAKELQ 216

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|E2RQB4 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   320 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLL 378

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   379 QDYPITDVCQILQKAKELQ 397

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9NVG8 TBC1D13 "TBC1 domain family member 13" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   320 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLMLIREQLLEGDFTVNMRLL 378

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   379 QDYPITDVCQILQKAKELQ 397

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1RR65 TBC1D13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   320 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLL 378

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   379 QDYPITDVCQILQKAKELQ 397

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9NWF3 TBC1D13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 161 (61.7 bits), Expect = 3.5e-11, P = 3.5e-11
 Identities = 34/79 (43%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   323 WLTLLLSQEFLLPDVIRIWDSLFAD-DNRFDFLLLVCCAMLILIREQLLEGDFTVNMRLL 381

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   382 QDYPITDVCQILQKAKELQ 400

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|E1BXI8 TBC1D13 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 160 (61.4 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/72 (48%), Positives = 46/72 (63%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D D   + LL VCCAM          GDFT N++LL
Sbjct:   319 WLTLLLSQEFLLPDVIRIWDSLFAD-DKRFDFLLLVCCAMLTLIRDQLLEGDFTLNMRLL 377

Query:    87 QNYPPISIRHLL 98
             Q+YP IS  HL+
Sbjct:   378 QDYP-ISDVHLI 388

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080204-86 tbc1d13 "TBC1 domain family, member 13" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 6.2e-11, P = 6.2e-11
 Identities = 35/70 (50%), Positives = 45/70 (64%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L S  D   E L+ VCCAM         AGDFT+N++LL
Sbjct:   320 WLTLLLSQEFLLPDVIRIWDSLFSHQDR-FEFLIPVCCAMLILIRDQLLAGDFTTNMRLL 378

Query:    87 QNYPPISIRH 96
             Q+YP IS  H
Sbjct:   379 QDYP-ISDVH 387

GO:0005622 "intracellular" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1MXD4 TBC1D13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/79 (41%), Positives = 48/79 (60%)

Query:    27 WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMXXXXXXXXXAGDFTSNLKLL 86
             W+TLLL+QEF   + + IWD+L +D +   + LL VCCAM          GDFT N++LL
Sbjct:   319 WLTLLLSQEFVLPDVIRIWDSLFADSNR-FDFLLLVCCAMLILIREQLLEGDFTVNMRLL 377

Query:    87 QNYPPISIRHLLCVANKLR 105
             Q+YP   +  +L  A +L+
Sbjct:   378 QDYPITDVCQVLQKAKELQ 396

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G13730	RabGAP/TBC domain-containing protein; RabGAP/TBC domain-containing protein; FUNCTIONS IN- RAB GTPase activator activity; INVOLVED IN- regulation of Rab GTPase activity; LOCATED IN- intracellular, chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- RabGAP/TBC (InterPro-IPR000195); BEST Arabidopsis thaliana protein match is- RabGAP/TBC domain-containing protein (TAIR-AT1G04830.1); Has 3013 Blast hits to 2943 proteins in 166 species- Archae - 0; Bacteria - 2; Metazoa - 1661; Fungi - 480; Plants - 300; Viruses - 0; Other Eukaryote [...] (449 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G09320	agenet domain-containing protein; agenet domain-containing protein; FUNCTIONS IN- RNA binding; [...] (517 aa)				•					0.538
	AT5G65250	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (300 aa)				•					0.537
	AT5G12430	DNAJ heat shock N-terminal domain-containing protein; DNAJ heat shock N-terminal domain-contain [...] (1165 aa)				•					0.537
	SMP2	SMP2; single-stranded RNA binding; Encodes a zinc finger containing protein similar to step II [...] (536 aa)				•					0.537
	ATARP4A	ATARP4A (Actin-related proteins 4A); protein binding / structural constituent of cytoskeleton; [...] (145 aa)				•					0.537
	AT1G68410	protein phosphatase 2C-related / PP2C-related; protein phosphatase 2C-related / PP2C-related; F [...] (436 aa)				•					0.537
	AT4G35140	transducin family protein / WD-40 repeat family protein; transducin family protein / WD-40 repe [...] (496 aa)				•					0.536
	AT5G13270	pentatricopeptide (PPR) repeat-containing protein; Encodes RARE1 (Required for accD RNA Editing [...] (752 aa)				•					0.534
	AT4G33060	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein; peptidyl-prolyl cis-trans [...] (504 aa)				•					0.534
	AT4G00752	UBX domain-containing protein; UBX domain-containing protein; FUNCTIONS IN- molecular_function [...] (469 aa)				•					0.534

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	6e-05
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	0.003

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 24  MIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL 75
              W   L  +E      L +WD  L   +G +  L RV  A+L   R+ LL
Sbjct: 158 ASKWFLTLFARELPLETVLRLWDLFL---EGGKFFLFRVALAILKRFRKELL 206

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 25  IGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL 75
           + W   L  +E      L IWD L +  +G    L RV  A+L L R  LL
Sbjct: 169 LRWFLTLFARELPLEIVLRIWDVLFA--EGSD-FLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
KOG4567	370	consensus GTPase-activating protein [General funct	99.91
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	99.85
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.68
KOG1093	725	consensus Predicted protein kinase (contains TBC a	99.44
KOG2224	781	consensus Uncharacterized conserved protein, conta	99.1
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	98.93
KOG2223	586	consensus Uncharacterized conserved protein, conta	98.73
COG5210	496	GTPase-activating protein [General function predic	98.64
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	98.47
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	98.32
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	98.24
KOG3636	669	consensus Uncharacterized conserved protein, conta	98.16
KOG2595	395	consensus Predicted GTPase activator protein [Sign	98.01
KOG2222	848	consensus Uncharacterized conserved protein, conta	97.79
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	97.5
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	97.26
KOG4347	671	consensus GTPase-activating protein VRP [General f	96.44

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.91  E-value=8.9e-25  Score=169.78  Aligned_cols=87  Identities=52%  Similarity=0.934  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCCCHHHHHH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLLC   99 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~~Il~   99 (108)
                      +.+|+|||+.+|+++|||++|+++|||++|++.+ ..+++.|+|+||+...|+.|+++||..+|++|||+|+.|+.+++.
T Consensus       276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~  354 (370)
T KOG4567|consen  276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLA  354 (370)
T ss_pred             ccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHH
Confidence            6789999999999999999999999999999996 689999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhc
Q 033935          100 VANKLRTL  107 (108)
Q Consensus       100 ~A~~l~~~  107 (108)
                      .|.+++++
T Consensus       355 ~A~~Lr~~  362 (370)
T KOG4567|consen  355 VADSLRDK  362 (370)
T ss_pred             HHHHHHhc
Confidence            99999864

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.7e-21  Score=154.00  Aligned_cols=86  Identities=34%  Similarity=0.597  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCC-----CH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPI-----SI   94 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~-----dv   94 (108)
                      ...|+|||++||+.||||+..++|+||+|+++++++.+||.|+|+|.|...+++|++.||.+++.+|||+|..     |+
T Consensus       383 ylQFAFRWmNcLLmRE~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eI  462 (484)
T KOG1092|consen  383 YLQFAFRWMNCLLMREFPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREI  462 (484)
T ss_pred             HHHHHHHHHHHHHHhhccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHH
Confidence            4689999999999999999999999999999998999999999999999999999999999999999999973     79


Q ss_pred             HHHHHHHHhhh
Q 033935           95 RHLLCVANKLR  105 (108)
Q Consensus        95 ~~Il~~A~~l~  105 (108)
                      +.++..|+.++
T Consensus       463 ellLseA~~~k  473 (484)
T KOG1092|consen  463 ELLLSEAFRLK  473 (484)
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.1e-16  Score=131.83  Aligned_cols=85  Identities=29%  Similarity=0.526  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHH-HHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWD-TLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHL   97 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD-~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~I   97 (108)
                      +.+|++||+++||.||||+.+++.+|| .++.++. ...++.|+.+|||..+|+.|+.+++..|++.|.|||+ .|++++
T Consensus       276 pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~p-r~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~yP~~~Dv~~~  354 (625)
T KOG1091|consen  276 PQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSP-RGILVACMFVSMLLYIRDSLLSSEYQTCLQYLMNYPEIIDVDKF  354 (625)
T ss_pred             hHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCc-hHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCCCcCcHHHH
Confidence            679999999999999999999999999 7777774 7789999999999999999999999999999999998 599999


Q ss_pred             HHHHHhhh
Q 033935           98 LCVANKLR  105 (108)
Q Consensus        98 l~~A~~l~  105 (108)
                      +++|..++
T Consensus       355 iekAl~l~  362 (625)
T KOG1091|consen  355 IEKALHLQ  362 (625)
T ss_pred             HHHHHHHH
Confidence            99999987

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=99.44  E-value=1.8e-13  Score=113.51  Aligned_cols=85  Identities=24%  Similarity=0.424  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCCCHHHHH
Q 033935           19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPISIRHLL   98 (108)
Q Consensus        19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~dv~~Il   98 (108)
                      ++..||+.|+.++|+.+||+++.+.+||.++.+.+   .|..++++|++.+.|+.|+..+|++++.++.+.|++|++.++
T Consensus       507 ~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~---SFplmi~vAil~~lR~~LLa~nfne~illf~d~pdldId~~I  583 (725)
T KOG1093|consen  507 IPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHS---SFPLMIGVAILIQLRDPLLACNFNECILLFSDLPDLDIDVCI  583 (725)
T ss_pred             cHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhhhhhhhCCchhheeeeccCCcccHHHHH
Confidence            57789999999999999999999999999999986   799999999999999999999999999999999999999999


Q ss_pred             HHHHhhhh
Q 033935           99 CVANKLRT  106 (108)
Q Consensus        99 ~~A~~l~~  106 (108)
                      +..+++++
T Consensus       584 res~~l~e  591 (725)
T KOG1093|consen  584 RESYHLME  591 (725)
T ss_pred             HHHhhhhh
Confidence            99999875

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.10  E-value=1.4e-10  Score=94.64  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC--HHHHHHHHhCCCC-CCH
Q 033935           18 AVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD--FTSNLKLLQNYPP-ISI   94 (108)
Q Consensus        18 ~~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d--f~~~l~lLq~~p~-~dv   94 (108)
                      |.-++||.||++++|+||||-..++|+|+..+++.. ...|+.++|+|++-.+.++.++++  -++.+-.+.|+.. .|.
T Consensus       640 ~lellfchrwlllcfkref~ea~airiweacwa~y~-tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdg  718 (781)
T KOG2224|consen  640 GLELLFCHRWLLLCFKREFPEAEAIRIWEACWAHYL-TDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDG  718 (781)
T ss_pred             hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCc
Confidence            567899999999999999999999999999999874 567999999999999999999866  3555555566654 699


Q ss_pred             HHHHHHHHhhhh
Q 033935           95 RHLLCVANKLRT  106 (108)
Q Consensus        95 ~~Il~~A~~l~~  106 (108)
                      +-|+++|..+..
T Consensus       719 elilrkar~ll~  730 (781)
T KOG2224|consen  719 ELILRKARGLLH  730 (781)
T ss_pred             hhhHHHHHHHHH
Confidence            999999998753

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=98.93  E-value=9.8e-10  Score=78.79  Aligned_cols=53  Identities=25%  Similarity=0.478  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhh
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL   75 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll   75 (108)
                      +..|+++|+.++|++++|.++++|+||.++ +++  ..++.++|+|++...|++||
T Consensus       162 ~~~~~~~w~~~lF~~~l~~~~~~~lwD~l~-~g~--~~~l~~~~lail~~~~~~il  214 (214)
T PF00566_consen  162 PEIYAFPWFLTLFSRSLPFDDVLRLWDFLL-EGY--KFFLFFIALAILKYLRDQIL  214 (214)
T ss_dssp             GHHHHHHHHHTTTTTTS-HHHHHHHHHHHH-HCT--THHHHHHHHHHHHHTHHHHH
T ss_pred             hhhhhhhhhHhhcCCcCCHHHHHHHHHHHH-cCC--CcHHHHHHHHHHHHHHHHhC
Confidence            677999999999999999999999999555 543  13499999999999999886

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=98.73  E-value=2.7e-08  Score=81.17  Aligned_cols=76  Identities=26%  Similarity=0.467  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHHH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHLL   98 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~Il   98 (108)
                      +=.|.+.|+.++|+...|++-..||||+++-+++   +|++..++++++.++++|+.+||..+.++|.+.|+ +..++++
T Consensus       472 PDiylidwiftlyskslpldlacRIwDvy~rdge---eFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF  548 (586)
T KOG2223|consen  472 PDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGE---EFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELF  548 (586)
T ss_pred             CchhhHHHHHHHHhccCChHHhhhhhheeeecch---HHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHH
Confidence            4578999999999999999999999999999997   89999999999999999999999999999999996 4454444

>COG5210 GTPase-activating protein [General function prediction only]

Probab=98.64  E-value=5e-08  Score=80.01  Aligned_cols=59  Identities=31%  Similarity=0.537  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHH
Q 033935           19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFT   80 (108)
Q Consensus        19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~   80 (108)
                      ....|++||+.++|.++||++.++||||++|.++.   ++.+-+.+|++...+++++..+.+
T Consensus       374 ~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~---~~l~~~~~~~l~~~~~~l~~~~~~  432 (496)
T COG5210         374 VLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS---SMLFQLALAILKLLRDKLLKLDSD  432 (496)
T ss_pred             chhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhhhhhhccCch
Confidence            56789999999999999999999999999999885   788899999999999999886543

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=2e-07  Score=75.99  Aligned_cols=69  Identities=23%  Similarity=0.403  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC-HHHHHHHHhCCCC
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD-FTSNLKLLQNYPP   91 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d-f~~~l~lLq~~p~   91 (108)
                      ..+++++|++++|+...|.+.++||||++|.++.   ++++.+++|++...++++++.+ -.++.+.++.++.
T Consensus       315 ~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGs---kvlfr~Alai~k~~ee~il~~~~~~~i~~~~~~~~~  384 (436)
T KOG2058|consen  315 ASLETLPWFLTLFVDILPSETVLRIWDCLFYEGS---KVLFRVALAILKKHEEEILKEDSSKEILRVLPDLTK  384 (436)
T ss_pred             eeeeehhhhHHHhcccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhHHHHhcCCCHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999996   9999999999999999999844 6667777765553

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=98.32  E-value=3.7e-07  Score=65.35  Aligned_cols=34  Identities=24%  Similarity=0.541  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCC
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPD   53 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~   53 (108)
                      +..|++||+.++|+++||++.++|+||.++++|.
T Consensus       165 ~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~  198 (199)
T smart00164      165 PSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS  198 (199)
T ss_pred             chhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence            6789999999999999999999999999999874

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=98.24  E-value=1.4e-06  Score=71.92  Aligned_cols=86  Identities=21%  Similarity=0.280  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc--CCHHHHHHHHhCCCC-CCHHH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA--GDFTSNLKLLQNYPP-ISIRH   96 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~--~df~~~l~lLq~~p~-~dv~~   96 (108)
                      -..|++||+...|.|||..+|++++|+.++++.. ..+|+.|++.|++..-++.++.  .++.+.++.....+. .|...
T Consensus       354 ~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~-~~~f~~~~~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~  432 (488)
T KOG2197|consen  354 DLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLP-SPHFHLYVAPAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLW  432 (488)
T ss_pred             ccceeeehhhcccccccccccHHHHHHHHHhcCc-cchHHHHHHHhhhhcchHHHHhcCccchhHHhhcccccccchhhh
Confidence            3578999999999999999999999999999886 4599999999999998888876  447888887766654 58888


Q ss_pred             HHHHHHhhhh
Q 033935           97 LLCVANKLRT  106 (108)
Q Consensus        97 Il~~A~~l~~  106 (108)
                      ++..|....+
T Consensus       433 ~~~~A~~~~~  442 (488)
T KOG2197|consen  433 VLVRAEALER  442 (488)
T ss_pred             HHHHHHHHHH
Confidence            8888876654

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=98.16  E-value=4.9e-06  Score=68.53  Aligned_cols=87  Identities=16%  Similarity=0.326  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc--CC-HHHHHHHHhCCCC----
Q 033935           19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA--GD-FTSNLKLLQNYPP----   91 (108)
Q Consensus        19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~--~d-f~~~l~lLq~~p~----   91 (108)
                      ++-+|+..|+-.||+..-+.+.+.-+||-++...+  +-+++++++-+|..-|++|+.  +| -++++++|.|.|.    
T Consensus       180 tPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaD--PF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~  257 (669)
T KOG3636|consen  180 TPDMYTLNWFASLFASSMSTEVCHALWDLYIQQAD--PFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV  257 (669)
T ss_pred             CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--ceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence            47789999999999999999999999999999886  357778889999999999986  44 6899999999995    


Q ss_pred             CCHHHHHHHHHhhhhc
Q 033935           92 ISIRHLLCVANKLRTL  107 (108)
Q Consensus        92 ~dv~~Il~~A~~l~~~  107 (108)
                      .|+....+.|..+..|
T Consensus       258 eDvpDffsLAqyY~~K  273 (669)
T KOG3636|consen  258 EDVPDFFSLAQYYSDK  273 (669)
T ss_pred             ccchhHHHHHHHHhhc
Confidence            2899999998876543

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=98.01  E-value=1.9e-05  Score=62.96  Aligned_cols=83  Identities=17%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHhcccc-CccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC--HHHHHHHHhCCCC-CCHHH
Q 033935           21 ASRMIGWITLLLTQEF-NFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD--FTSNLKLLQNYPP-ISIRH   96 (108)
Q Consensus        21 ~~f~~rW~~lLF~ref-~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d--f~~~l~lLq~~p~-~dv~~   96 (108)
                      .+|++.|+++.|++.. ++..++|+.|.+++...   -.-.|+|++++...|.+|++.|  -+-.=.+|+.+|. .+.++
T Consensus       215 tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~p---l~piyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~  291 (395)
T KOG2595|consen  215 TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHP---LLPIYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDT  291 (395)
T ss_pred             ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCc---chhHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHH
Confidence            5799999999999999 57788999999999874   4889999999999999999855  3334467799995 79999


Q ss_pred             HHHHHHhhhh
Q 033935           97 LLCVANKLRT  106 (108)
Q Consensus        97 Il~~A~~l~~  106 (108)
                      +++.+..+..
T Consensus       292 lik~s~~~i~  301 (395)
T KOG2595|consen  292 LIKESVLLIT  301 (395)
T ss_pred             HHHHHHHHHh
Confidence            9998866543

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=97.79  E-value=3.9e-05  Score=63.89  Aligned_cols=81  Identities=15%  Similarity=0.342  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-----CCHHHHHHHHhCCCC--CC
Q 033935           21 ASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-----GDFTSNLKLLQNYPP--IS   93 (108)
Q Consensus        21 ~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-----~df~~~l~lLq~~p~--~d   93 (108)
                      ++....|++++|+.-|.+...+|+||.+|.++.   --++.+.++||+.-..+|.+     .+-.++...|..+|.  .|
T Consensus       330 slitl~w~ltlf~nv~~~killriwd~~fy~g~---i~ifql~i~ilkmkeqdi~~iaettensa~if~als~ip~~vtd  406 (848)
T KOG2222|consen  330 SLITLHWFLTLFANVFHMKILLRIWDFFFYEGG---INIFQLIIGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTD  406 (848)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHhheecCc---chhHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhh
Confidence            456789999999999999999999999999884   34567888999988887765     346788999999996  49


Q ss_pred             HHHHHHHHHhh
Q 033935           94 IRHLLCVANKL  104 (108)
Q Consensus        94 v~~Il~~A~~l  104 (108)
                      +++++++|.+.
T Consensus       407 ve~l~~~~~~~  417 (848)
T KOG2222|consen  407 VEKLFEQAGEF  417 (848)
T ss_pred             HHHHHHHHhhc
Confidence            99999988653

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=97.50  E-value=0.0003  Score=61.13  Aligned_cols=81  Identities=15%  Similarity=0.313  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCC-HHHHHHHHhCCCCC----C
Q 033935           19 VVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGD-FTSNLKLLQNYPPI----S   93 (108)
Q Consensus        19 ~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~d-f~~~l~lLq~~p~~----d   93 (108)
                      -+..|+.+|+.+.|+..||+.-+-|+.|.+|-.+.   +.++-++.+++-.-+..|++.| |++++.++++.-+.    .
T Consensus       738 ~pslyAapw~lt~fasQf~lGfvarvfd~~flq~t---evifK~a~~llsv~k~~l~e~dn~e~i~d~~k~~~p~~~~~e  814 (948)
T KOG4436|consen  738 SPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGT---EVIFKVALSLLSVHKQLLLEKDNFEEIVDFLKTTLPKMEHTE  814 (948)
T ss_pred             ChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhcc---chhhhhHHHHHHhhHHHHHhhhhHHHHHHHHHHhhhhhhHHH
Confidence            36899999999999999999999999999999875   7889999999999999999966 99999999988652    5


Q ss_pred             HHHHHHHHH
Q 033935           94 IRHLLCVAN  102 (108)
Q Consensus        94 v~~Il~~A~  102 (108)
                      .++|+++-.
T Consensus       815 meki~~qvf  823 (948)
T KOG4436|consen  815 MEKIIKQVF  823 (948)
T ss_pred             HHHHHHHHH
Confidence            566665543

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=97.26  E-value=0.00017  Score=58.22  Aligned_cols=68  Identities=29%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC
Q 033935           21 ASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP   91 (108)
Q Consensus        21 ~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~   91 (108)
                      .+|+.+|++++|+..||++-..++||.++.++   ......+..++++...+.+...+++..++.+++-+.
T Consensus       302 ~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g---~~i~~~~~~~l~~~~~~~~~~~~~e~~~~~l~~~~~  369 (397)
T KOG1102|consen  302 SMYASQWFLTLFAAKFPLELVLRIWDALFVEG---VSILFRFSLALLKHKADDLLDLDFESLLSYLRVDLP  369 (397)
T ss_pred             ceeccceeeEeeeccccHHHHHHHhHHHHHhc---hHHHHHHHHHHhhhhhHHHhhccHHHHHHHHhcccH
Confidence            47999999999999999999999999999998   478999999999999999999999999999988875

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=96.44  E-value=0.0022  Score=54.69  Aligned_cols=71  Identities=20%  Similarity=0.336  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-CCHHHHHHHHhCCC
Q 033935           17 LAVVASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-GDFTSNLKLLQNYP   90 (108)
Q Consensus        17 ~~~~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-~df~~~l~lLq~~p   90 (108)
                      +|+...-.+.|+.++|-..+|++..+||=|++|-++.   +.++-+++|++....+.|++ .|-.+.|..++||-
T Consensus       354 l~~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~---rvlFqiaLail~~N~~~il~~~dDge~~~vl~~y~  425 (671)
T KOG4347|consen  354 LGQLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGP---RVLFQIALAILKQNAERILSATDDGEAMMVLGNYF  425 (671)
T ss_pred             hcccceEeeHHHHHHHHHHcchHHHHHHHhhhhhccc---HHHHHHHHHHHHhhHHHhcccCCchHHHHHHHHHH
Confidence            3456677899999999999999999999999999995   89999999999999999998 44577888877763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	6e-19
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	2e-14
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	1e-11
2qq8_A	334	TBC1 domain family member 14; structural genomics	4e-05

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score = 78.8 bits (194), Expect = 6e-19
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLL-AGDFTSNLKL 85
           W+  LL +E      + +WDT  S+PDG     L VC A L+  R+ +L   DF   L  
Sbjct: 249 WMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308

Query: 86  LQNYPPIS-----IRHLLCVANKLRTL 107
           LQN P        I  LL  A +L+  
Sbjct: 309 LQNLPTAHWDDEDISLLLAEAYRLKFA 335

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 1/77 (1%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           W+  LL +EF     + +WDT LS+    + T      +  I            S +   
Sbjct: 236 WMNCLLMREFQMGTVIRMWDTYLSETS-QEVTSSYSMSSNDIKPPVTPTEPRVASFVTPT 294

Query: 87  QNYPPISIRHLLCVANK 103
           +++   +        N 
Sbjct: 295 KDFQSPTTALSNMTPNN 311

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-GDFTSNLKL 85
           W           ++   +WD ++S   G  + L+ V   +L+  + +++A        K 
Sbjct: 207 WFKRCFAGCLPESSLQRVWDKVVS---GSCKILVFVAVEILLTFKIKVMALNSAEKITKF 263

Query: 86  LQNYPPISIRHLLCVANKL 104
           L+N P  S   ++  A  L
Sbjct: 264 LENIPQDSSDAIVSKAIDL 282

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
           WI  L ++         IWD    D  G  E L R    +L L    L   DF    + L
Sbjct: 233 WIFTLYSKSLPLDLACRIWDVFCRD--GE-EFLFRTALGILKLFEDILTKMDFIHMAQFL 289

Query: 87  QNYPP 91
              P 
Sbjct: 290 TRLPE 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	99.79
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	99.79
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	99.79
2qq8_A	334	TBC1 domain family member 14; structural genomics	99.74
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	99.72
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	99.66
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	99.66

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=99.79  E-value=6.6e-20  Score=140.49  Aligned_cols=83  Identities=18%  Similarity=0.227  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCH-HHHHHHHhCCCCCCHHHHHHH
Q 033935           22 SRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDF-TSNLKLLQNYPPISIRHLLCV  100 (108)
Q Consensus        22 ~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df-~~~l~lLq~~p~~dv~~Il~~  100 (108)
                      +++.||++++|+++||+++++||||.+|+++.   ++++++|+|+++..|++|++.|+ ++++++||++|+.|++.++++
T Consensus       202 ~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~---~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~~di~~ll~~  278 (294)
T 3qwl_A          202 LPYDLWFKRCFAGCLPESSLQRVWDKVVSGSC---KILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSK  278 (294)
T ss_dssp             SCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCS---THHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCSTTHHHHHHH
T ss_pred             hHHHHHHHHHhccCCCHHHHHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCcccHHHHHHH
Confidence            34459999999999999999999999999775   89999999999999999999886 888999999999999999999


Q ss_pred             HHhhhhc
Q 033935          101 ANKLRTL  107 (108)
Q Consensus       101 A~~l~~~  107 (108)
                      |..++++
T Consensus       279 A~~l~~~  285 (294)
T 3qwl_A          279 AIDLWHK  285 (294)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=99.79  E-value=2.3e-19  Score=138.39  Aligned_cols=88  Identities=34%  Similarity=0.557  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhc-CCHHHHHHHHhCCCCC-----C
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLA-GDFTSNLKLLQNYPPI-----S   93 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~-~df~~~l~lLq~~p~~-----d   93 (108)
                      +..|++||++++|+++||+++++||||.+|++++++..+++|+|+|++...|++|++ .||++++++||++|+.     |
T Consensus       242 ~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~d  321 (345)
T 2qfz_A          242 YLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDED  321 (345)
T ss_dssp             HHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHH
T ss_pred             hhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhH
Confidence            468999999999999999999999999999998755569999999999999999995 8999999999999985     6


Q ss_pred             HHHHHHHHHhhhhc
Q 033935           94 IRHLLCVANKLRTL  107 (108)
Q Consensus        94 v~~Il~~A~~l~~~  107 (108)
                      ++.+++.|..++.+
T Consensus       322 i~~ll~~A~~l~~~  335 (345)
T 2qfz_A          322 ISLLLAEAYRLKFA  335 (345)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=99.79  E-value=9.6e-20  Score=143.76  Aligned_cols=87  Identities=31%  Similarity=0.497  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCC-----------------------------------------------
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDP-----------------------------------------------   52 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~-----------------------------------------------   52 (108)
                      +.+|++||++++|+|+||+++++||||.+|+++                                               
T Consensus       229 ~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  308 (396)
T 1fkm_A          229 FIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMT  308 (396)
T ss_dssp             THHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred             hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999966                                               


Q ss_pred             ----C---------CCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 033935           53 ----D---------GPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPI-----SIRHLLCVANKLRT  106 (108)
Q Consensus        53 ----~---------~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~-----dv~~Il~~A~~l~~  106 (108)
                          +         ++.+++.|+|+|+|...|++|++.||++++++||++|..     |++.++++|..++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~~~~~~di~~ll~~A~~l~~  380 (396)
T 1fkm_A          309 PNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS  380 (396)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHH
Confidence                1         224799999999999999999999999999999999974     79999999998764

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=99.74  E-value=2.5e-18  Score=132.60  Aligned_cols=83  Identities=23%  Similarity=0.413  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCC-CCHHHHH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPP-ISIRHLL   98 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~-~dv~~Il   98 (108)
                      +..|++||++++|+++||+++++||||.+|+++.   ++++++|+|++...|++|++.||++++++||++|+ .|++.++
T Consensus       226 ~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~---~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~  302 (334)
T 2qq8_A          226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGE---EFLFRTALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELF  302 (334)
T ss_dssp             GGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHH
T ss_pred             ccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHH
Confidence            4689999999999999999999999999999985   89999999999999999999999999999999997 6999999


Q ss_pred             HHHHhhh
Q 033935           99 CVANKLR  105 (108)
Q Consensus        99 ~~A~~l~  105 (108)
                      +.|.+++
T Consensus       303 ~~a~~l~  309 (334)
T 2qq8_A          303 ASIATIQ  309 (334)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHcc
Confidence            9999876

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=99.72  E-value=8.2e-18  Score=127.36  Aligned_cols=85  Identities=15%  Similarity=0.273  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhccccC-ccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcC--CHHHHHHHHhCCC-CCCHH
Q 033935           20 VASRMIGWITLLLTQEFN-FANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG--DFTSNLKLLQNYP-PISIR   95 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~-l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~--df~~~l~lLq~~p-~~dv~   95 (108)
                      ..+|++||++++|++++| +++++|+||.+++++.   .+++|+|+|++...|++|++.  |+++++.+++++| +.|++
T Consensus       200 ~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~---~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~  276 (292)
T 4hl4_A          200 GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHP---LMPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYE  276 (292)
T ss_dssp             CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCT---THHHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHH
T ss_pred             CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHH
Confidence            357999999999999996 9999999999999985   799999999999999999984  7999999999999 58999


Q ss_pred             HHHHHHHhhhhc
Q 033935           96 HLLCVANKLRTL  107 (108)
Q Consensus        96 ~Il~~A~~l~~~  107 (108)
                      .++++|..++++
T Consensus       277 ~li~~A~~l~~~  288 (292)
T 4hl4_A          277 TLISRAGDLFVQ  288 (292)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=99.66  E-value=2e-17  Score=125.90  Aligned_cols=83  Identities=27%  Similarity=0.422  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHh-CCCC-----CC
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQ-NYPP-----IS   93 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq-~~p~-----~d   93 (108)
                      +..|++||++++|+++||+++++|+||.+++++.   ++++++|+|++...|++|++.||++++++++ ++|.     .|
T Consensus       187 ~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~---~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~~~lp~~~~~~~d  263 (310)
T 3hzj_A          187 AHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL---NIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEEN  263 (310)
T ss_dssp             GGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCHHHHHHHHHTHHHHTTCSHHH
T ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCccccccccc
Confidence            4589999999999999999999999999999986   7899999999999999999999999999997 4563     38


Q ss_pred             HHHHHHHHHhhh
Q 033935           94 IRHLLCVANKLR  105 (108)
Q Consensus        94 v~~Il~~A~~l~  105 (108)
                      ++.+++.|.+++
T Consensus       264 ~~~ll~~A~~l~  275 (310)
T 3hzj_A          264 ARRLMEQACNIK  275 (310)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999999885

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=99.66  E-value=5.1e-17  Score=124.46  Aligned_cols=84  Identities=10%  Similarity=0.275  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCCCCchHHHHHHHHHHHHHHhHhhcC-CHHHHHHHHhC-CCCC---CH
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAG-DFTSNLKLLQN-YPPI---SI   94 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~~~~~~~~~i~vaiL~~~r~~Ll~~-df~~~l~lLq~-~p~~---dv   94 (108)
                      +..|++||++++|+++||+++++|+||.+|+++.   ++++++|+|++...|++|++. |+++++++|++ +|+.   |+
T Consensus       221 ~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~---~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di  297 (331)
T 3qye_A          221 PSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT---EVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQM  297 (331)
T ss_dssp             GGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT---THHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHH
T ss_pred             hHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHH
Confidence            4679999999999999999999999999999986   699999999999999999985 79999999998 4544   79


Q ss_pred             HHHHHHHHhhhh
Q 033935           95 RHLLCVANKLRT  106 (108)
Q Consensus        95 ~~Il~~A~~l~~  106 (108)
                      +.++++|.+++-
T Consensus       298 ~~li~~A~~l~~  309 (331)
T 3qye_A          298 EKTINQVFEMDI  309 (331)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCc
Confidence            999999988763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	108
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	6e-11

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 6e-11
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 27  WITLLLTQEFNFANNLHIWDTLLSDPDGPQETLLRVCCAMLILIRRRLLAGDFTSNLKLL 86
                 T   N   N  + D+         E  + VC A LI    +L+  DF   +  L
Sbjct: 101 DFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFL 160

Query: 87  QNYPPIS-----IRHLLCVANKLRTL 107
           QN P        I  LL  A   ++L
Sbjct: 161 QNPPTKDWTETDIEMLLSEAFIWQSL 186

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.84

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.5e-21  Score=138.57  Aligned_cols=87  Identities=31%  Similarity=0.510  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhccccCccchHHHHHHHHcCCC----------------------------------------------
Q 033935           20 VASRMIGWITLLLTQEFNFANNLHIWDTLLSDPD----------------------------------------------   53 (108)
Q Consensus        20 ~~~f~~rW~~lLF~ref~l~~vl~IWD~~f~~~~----------------------------------------------   53 (108)
                      +.+|++||+.|+|+||||+++++|+||.+|++++                                              
T Consensus        34 ~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (188)
T d1fkma2          34 FIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMT  113 (188)
T ss_dssp             THHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred             eeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhhhccccccccccchhhhhhccccccccccccccc
Confidence            5789999999999999999999999999998532                                              


Q ss_pred             --------------CCchHHHHHHHHHHHHHHhHhhcCCHHHHHHHHhCCCCC-----CHHHHHHHHHhhhh
Q 033935           54 --------------GPQETLLRVCCAMLILIRRRLLAGDFTSNLKLLQNYPPI-----SIRHLLCVANKLRT  106 (108)
Q Consensus        54 --------------~~~~~~~~i~vaiL~~~r~~Ll~~df~~~l~lLq~~p~~-----dv~~Il~~A~~l~~  106 (108)
                                    +..+++.|+|+|++...|++|+++||++++++|||+|+.     |++.++++|..+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~df~~~l~~Lq~~P~~~~~~~di~~ll~~A~~~~~  185 (188)
T d1fkma2         114 PNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTKDWTETDIEMLLSEAFIWQS  185 (188)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHH
Confidence                          235789999999999999999999999999999999974     89999999977664