Citrus Sinensis ID: 034010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Secondary Structure (PSIPRED)
ccccccccEEEcccccccccccccEEEccEEcccccEEEEEcccccccccccccEEEEccEEEEEEEccccccEEEEEEcEEccccccEEccEEEEEEccccEEcc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccHHHHHHHHcccccccEEEEccEEEEEcccHHHHEHHccccEEEHEEEHccccEEcEEEHHHccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maefdgrpffscrnclnplafhHDLISktfkaqtgqaymFSNAMNVVLGRKEDKQMITGMYTIAKIYCsncgqelgWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Flexible Loop (DISEMBL)
maefdgrpffSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Low Complexity Region (SEG)
MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Disordered region (IsUnstruct)
*******PFFSCRNCLNPLAFHHDLISKTFKA***********************MITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM*****
Disordered Region (DISOPRED)
**EFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLK***
Disordered Region (DISEMBL)
MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Disordered Region (DISPRO)
***FDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q2V3E2	105	Protein yippee-like At4g2	yes	no	0.990	1.0	0.523	1e-28
Q9T096	106	Protein yippee-like At4g2	no	no	0.981	0.981	0.509	5e-28
Q9SR97	128	Protein yippee-like At3g0	no	no	0.905	0.75	0.5	3e-23
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.896	0.798	0.463	3e-21
Q9C777	129	Protein yippee-like At3g1	no	no	0.943	0.775	0.425	3e-21
Q9FN32	129	Protein yippee-like At5g5	no	no	0.962	0.790	0.407	4e-21
Q65Z54	119	Protein yippee-like 3 OS=	N/A	no	0.896	0.798	0.452	6e-21
Q9W2X7	114	Protein yippee-like CG153	yes	no	0.896	0.833	0.452	1e-20
Q9ESC7	118	Protein yippee-like 1 OS=	yes	no	0.896	0.805	0.442	6e-20
O60688	119	Protein yippee-like 1 OS=	no	no	0.896	0.798	0.442	7e-20

>sp|Q2V3E2|YIPL5_ARATH Protein yippee-like At4g27740 OS=Arabidopsis thaliana GN=At4g27740 PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 73/105 (69%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MA     P + CRNC NPLA   DLISK F   +G A+MFS+AMNVV+G K  +++ITG 
Sbjct: 1   MAANKTLPTYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGS 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           Y +A + CS CG+ LGW Y+  +DLKQ++KEG F++EK K+ K Y
Sbjct: 61  YVVADVMCSKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTKRY 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T096|YIPL6_ARATH Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 77/104 (74%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MA+  G   +SC NC N +  H D+ISK F+ +TG+A++FS+AMN+V+G KED+ ++TG+
Sbjct: 1   MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           +T+A I C +C + LGW Y RAY+  QK+KEG FI EK K++KE
Sbjct: 61  HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKE 104

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 67/96 (69%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC+ C    A  +D+ISK+F  + G+AY+F N +NV +G KE + MITG +T+A I+C 
Sbjct: 14  YSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFCV 73

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           +CG  +GW Y  AYD  QK+KEG FILE+FK+L  Y
Sbjct: 74  SCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPY 109

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 67/95 (70%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct: 21  YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCE 80

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           NC   LGW Y +A++L QK+KEG FI+E   M+K+
Sbjct: 81  NCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKD 115

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 71/101 (70%), Gaps = 1/101 (0%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           +   +G+ + SC++C   LA   D++SK+F+++ G+AY+FS  +NV  G+KED+ M+TGM
Sbjct: 6   LVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGM 64

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 101
           +T+  IYC  CG  +GW Y  A++  QK+KEG  +LE++K+
Sbjct: 65  HTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 2   AEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMY 61
            E +GR +  CR C   LA   DL+S++F  + G+AY+F+ ++N+ +G  E++ M++GM+
Sbjct: 7   VELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMH 65

Query: 62  TIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           T+A I+C  CGQ +GW Y  A++  QK+KEG F+LE+ +++ E
Sbjct: 66  TVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q65Z54|YPEL3_ORYLA Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 67/95 (70%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct: 21  YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCE 80

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           NC   LGW Y +A++L QK+KEG +I+E   M+K+
Sbjct: 81  NCHTTLGWKYEQAFELSQKYKEGKYIIELSHMIKD 115

May be involved in proliferation and apoptosis in myeloid precursor cells.

Oryzias latipes (taxid: 8090)

>sp|Q9W2X7|YPL1_DROME Protein yippee-like CG15309 OS=Drosophila melanogaster GN=CG15309 PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 64/95 (67%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC +C   LA H +LISK+F+   G AY+F++ +NV  G+ E++ ++TG++ +A IYC 
Sbjct: 16  YSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVVNVACGQTEERVLLTGLHAVADIYCE 75

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
            C   LGW Y  AY+  QK+KEG FI+E   M+KE
Sbjct: 76  CCKTPLGWKYEHAYESSQKYKEGKFIIELAHMIKE 110

Drosophila melanogaster (taxid: 7227)

>sp|Q9ESC7|YPEL1_MOUSE Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 65/95 (68%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct: 21  YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCE 80

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct: 81  NCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115

May play a role in epithelioid conversion of fibroblasts.

Mus musculus (taxid: 10090)

>sp|O60688|YPEL1_HUMAN Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 65/95 (68%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct: 21  YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCE 80

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct: 81  NCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115

May play a role in epithelioid conversion of fibroblasts.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
255549192	104	fad NAD binding oxidoreductases, putativ	0.915	0.932	0.701	2e-37
224120890	105	predicted protein [Populus trichocarpa]	0.990	1.0	0.666	5e-37
224132690	105	predicted protein [Populus trichocarpa]	0.990	1.0	0.638	9e-37
225455302	106	PREDICTED: protein yippee-like At4g27745	0.990	0.990	0.575	1e-31
255564613	105	fad NAD binding oxidoreductases, putativ	0.981	0.990	0.548	1e-29
356522494	123	PREDICTED: protein yippee-like At4g27745	0.971	0.837	0.533	6e-29
351722811	107	uncharacterized protein LOC100526937 [Gl	0.952	0.943	0.534	2e-28
449497373	105	PREDICTED: protein yippee-like At4g27740	0.981	0.990	0.571	3e-28
449456413	105	PREDICTED: protein yippee-like At4g27740	0.981	0.990	0.571	4e-28
351727751	106	uncharacterized protein LOC100306443 [Gl	0.981	0.981	0.519	2e-27

>gi|255549192|ref|XP_002515650.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223545193|gb|EEF46702.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 87/97 (89%)

Query: 8   PFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIY 67
           P +SCRNC NPLAF+ DLIS +FKA++GQAYMFS+ +NVVLG+KED+ MITG+YTIA IY
Sbjct: 7   PLYSCRNCRNPLAFYSDLISTSFKAKSGQAYMFSHVINVVLGKKEDRHMITGLYTIADIY 66

Query: 68  CSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           CSNCG+ELGW Y+ +YD+KQ++KEGNFI+EK K+L+E
Sbjct: 67  CSNCGEELGWKYVMSYDIKQRYKEGNFIVEKLKILEE 103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120890|ref|XP_002318444.1| predicted protein [Populus trichocarpa] gi|222859117|gb|EEE96664.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 89/105 (84%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE    P +SCRNC NPLAF  DL+SK+++A++GQAYMFS+ MN+VLG K+D +MITGM
Sbjct: 1   MAESGENPLYSCRNCRNPLAFSTDLLSKSYQARSGQAYMFSHVMNIVLGHKKDMKMITGM 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           YTIA I+CS+CGQELGW Y+RA+D  Q++KEGNFILEK K++KEY
Sbjct: 61  YTIAGIHCSSCGQELGWKYVRAFDPTQRFKEGNFILEKLKLVKEY 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132690|ref|XP_002321385.1| predicted protein [Populus trichocarpa] gi|222868381|gb|EEF05512.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/105 (63%), Positives = 87/105 (82%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE    P +SCRNC NPLAF  DL+SK +KA++GQAYMFS+ MN+VLG+KED++M++GM
Sbjct: 1   MAESGDHPLYSCRNCRNPLAFDRDLLSKAYKARSGQAYMFSHVMNIVLGQKEDRKMLSGM 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           YT+A I+C NCG ELGW Y+RA+D  Q+ KEGNFI+EK K++KEY
Sbjct: 61  YTVAAIFCRNCGHELGWKYVRAFDPSQRIKEGNFIVEKLKLVKEY 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455302|ref|XP_002275349.1| PREDICTED: protein yippee-like At4g27745 isoform 2 [Vitis vinifera] gi|302143941|emb|CBI23046.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 87/106 (82%), Gaps = 1/106 (0%)

Query: 1   MAEFDG-RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITG 59
           M EF G RP FSCRNC NP+AF  DLISK F  ++G+A++F +AMN+V+G KE+KQ+ITG
Sbjct: 1   MGEFPGHRPTFSCRNCRNPVAFWQDLISKDFWGKSGRAFLFHHAMNIVVGEKEEKQLITG 60

Query: 60  MYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           ++TIA I CSNCG+ +GW Y++AY+ ++++KEG FI+E+ K++KEY
Sbjct: 61  LFTIANISCSNCGEVMGWKYVQAYEPRERYKEGKFIIERAKIVKEY 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564613|ref|XP_002523301.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223537389|gb|EEF39017.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 82/104 (78%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           M +  G   +SC  C N ++ H D+ISK F+A  G+A++FS+AMN++LGRKED+Q+ITG+
Sbjct: 1   MEDAIGARLYSCYRCRNLVSRHDDIISKGFQASNGRAFLFSHAMNIILGRKEDRQLITGL 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           +T+A IYCS+CG+ LGW Y RAY+  QK+KEG F++EKFK++KE
Sbjct: 61  HTVADIYCSDCGELLGWKYERAYEESQKYKEGKFVIEKFKIVKE 104

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522494|ref|XP_003529881.1| PREDICTED: protein yippee-like At4g27745-like [Glycine max]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 81/103 (78%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE      + C  C N +AFH D++SK F+A  G+A++FS+AMN++LG KED+Q+ITG+
Sbjct: 1   MAELMASRAYCCFKCQNLVAFHDDIVSKDFQASNGRAFLFSHAMNIILGPKEDRQLITGL 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLK 103
           +T+A +YCS+CG+ELGW Y++AY+  QK+KEG  +LEKFK++K
Sbjct: 61  HTVADVYCSDCGEELGWKYIKAYEETQKYKEGKCVLEKFKIIK 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722811|ref|NP_001236233.1| uncharacterized protein LOC100526937 [Glycine max] gi|255631187|gb|ACU15959.1| unknown [Glycine max]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 81/101 (80%)

Query: 5   DGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIA 64
           D    + C+NC NP+AF  +L+SK + A+TG+A+MFS+A N+VLG K+++ ++TG+YTIA
Sbjct: 6   DPSATYRCKNCQNPVAFRAELLSKNYLAKTGRAFMFSHARNIVLGPKQERSLVTGVYTIA 65

Query: 65  KIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
            I+CSNCG+ELGW YL+AY+ ++K+KEG FI+E  K+ K+Y
Sbjct: 66  GIFCSNCGEELGWKYLQAYEARRKFKEGKFIIETAKIAKDY 106

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497373|ref|XP_004160384.1| PREDICTED: protein yippee-like At4g27740-like [Cucumis sativus]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE+   P +SCRNC NPLA    L+SK+F A++G+A++FS A N+V G KE KQ+ITG+
Sbjct: 1   MAEYS-NPTYSCRNCRNPLASGAHLLSKSFLAKSGKAFLFSEAKNIVEGPKEQKQLITGI 59

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           +  A+I+C+ CGQ LGW YL+AYDL QK+KEG FI+E  K+ KEY
Sbjct: 60  FKTAEIHCNICGQALGWKYLKAYDLSQKYKEGKFIIETAKISKEY 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456413|ref|XP_004145944.1| PREDICTED: protein yippee-like At4g27740-like [Cucumis sativus]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE+   P +SCRNC NPLA    L+SK+F A++G+A++FS A N+V G KE KQ+ITG+
Sbjct: 1   MAEYS-NPTYSCRNCRNPLASGAHLLSKSFLAKSGKAFLFSEAKNIVEGPKEHKQLITGI 59

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
           +  A+I+C+ CGQ LGW YL+AYDL QK+KEG FI+E  K+ KEY
Sbjct: 60  FKTAEIHCNICGQALGWKYLKAYDLSQKYKEGKFIIETAKISKEY 104

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727751|ref|NP_001235124.1| uncharacterized protein LOC100306443 [Glycine max] gi|356509220|ref|XP_003523349.1| PREDICTED: protein yippee-like At4g27745-like [Glycine max] gi|255628561|gb|ACU14625.1| unknown [Glycine max]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 77/104 (74%)

Query: 1   MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
           MAE  G   +SC NC N ++ H D+ISK F  + G+A++FS+AMN+V G KED+ ++TG+
Sbjct: 1   MAELIGPRLYSCSNCRNHVSLHDDIISKAFHGRNGRAFLFSHAMNIVTGPKEDRHLLTGL 60

Query: 61  YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
           +T+A +YC +C + LGW Y RAY+  QK+KEG FILEK K++KE
Sbjct: 61  HTVADVYCGDCREVLGWKYERAYEASQKYKEGKFILEKSKIVKE 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:1009023354	106	AT4G27745 "AT4G27745" [Arabido	0.981	0.981	0.509	2.8e-27
TAIR|locus:2137742	105	AT4G27740 "AT4G27740" [Arabido	0.924	0.933	0.540	3.5e-27
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.905	0.75	0.5	2.3e-23
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.943	0.617	0.425	3.4e-22
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.896	0.798	0.463	1.5e-21
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.952	0.782	0.411	8e-21
FB|FBgn0030183	114	CG15309 [Drosophila melanogast	0.896	0.833	0.452	1e-20
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.943	0.769	0.405	1.7e-20
UNIPROTKB|A6QLE8	119	YPEL1 "YPEL1 protein" [Bos tau	0.896	0.798	0.442	2.1e-20
UNIPROTKB|E2RE07	119	YPEL1 "Uncharacterized protein	0.896	0.798	0.442	2.1e-20

TAIR|locus:1009023354 AT4G27745 "AT4G27745" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 53/104 (50%), Positives = 77/104 (74%)

Query:     1 MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
             MA+  G   +SC NC N +  H D+ISK F+ +TG+A++FS+AMN+V+G KED+ ++TG+
Sbjct:     1 MAQAIGPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGL 60

Query:    61 YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
             +T+A I C +C + LGW Y RAY+  QK+KEG FI EK K++KE
Sbjct:    61 HTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKIVKE 104

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2137742 AT4G27740 "AT4G27740" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 53/98 (54%), Positives = 71/98 (72%)

Query:     8 PFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIY 67
             P + CRNC NPLA   DLISK F   +G A+MFS+AMNVV+G K  +++ITG Y +A + 
Sbjct:     8 PTYFCRNCENPLALGEDLISKKFVGASGPAFMFSHAMNVVVGPKIGRKLITGSYVVADVM 67

Query:    68 CSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
             CS CG+ LGW Y+  +DLKQ++KEG F++EK K+ K Y
Sbjct:    68 CSKCGETLGWKYVETFDLKQRYKEGMFVIEKLKLTKRY 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 48/96 (50%), Positives = 67/96 (69%)

Query:    10 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
             +SC+ C    A  +D+ISK+F  + G+AY+F N +NV +G KE + MITG +T+A I+C 
Sbjct:    14 YSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFCV 73

Query:    70 NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKEY 105
             +CG  +GW Y  AYD  QK+KEG FILE+FK+L  Y
Sbjct:    74 SCGSLVGWKYEIAYDKSQKYKEGKFILERFKVLGPY 109

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 43/101 (42%), Positives = 71/101 (70%)

Query:     1 MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
             +   +G+ + SC++C   LA   D++SK+F+++ G+AY+FS  +NV  G+KED+ M+TGM
Sbjct:    39 LVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGM 97

Query:    61 YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 101
             +T+  IYC  CG  +GW Y  A++  QK+KEG  +LE++K+
Sbjct:    98 HTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 138

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 44/95 (46%), Positives = 67/95 (70%)

Query:    10 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
             +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct:    21 YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCE 80

Query:    70 NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
             NC   LGW Y +A++L QK+KEG FI+E   M+K+
Sbjct:    81 NCHTTLGWKYEQAFELSQKYKEGKFIIELSHMIKD 115

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 42/102 (41%), Positives = 71/102 (69%)

Query:     3 EFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYT 62
             E +GR +  CR C   LA   DL+S++F  + G+AY+F+ ++N+ +G  E++ M++GM+T
Sbjct:     8 ELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHT 66

Query:    63 IAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
             +A I+C  CGQ +GW Y  A++  QK+KEG F+LE+ +++ E
Sbjct:    67 VADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRIVDE 108

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0030183 CG15309 [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 43/95 (45%), Positives = 64/95 (67%)

Query:    10 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
             +SC +C   LA H +LISK+F+   G AY+F++ +NV  G+ E++ ++TG++ +A IYC 
Sbjct:    16 YSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVVNVACGQTEERVLLTGLHAVADIYCE 75

Query:    70 NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
              C   LGW Y  AY+  QK+KEG FI+E   M+KE
Sbjct:    76 CCKTPLGWKYEHAYESSQKYKEGKFIIELAHMIKE 110

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 41/101 (40%), Positives = 69/101 (68%)

Query:     1 MAEFDGRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM 60
             +   +G+  +SC++C   LA + D+ISK+F  + G+AY+F+   NV +G  E++ M+TG 
Sbjct:     6 VVNLEGK-IYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLMMTGK 64

Query:    61 YTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKM 101
             +T+A I+C +CG  +GW Y  A++  QK+KEG  +LE+FK+
Sbjct:    65 HTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERFKI 105

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6QLE8 YPEL1 "YPEL1 protein" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 42/95 (44%), Positives = 65/95 (68%)

Query:    10 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
             +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct:    21 YSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCE 80

Query:    70 NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
             NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:    81 NCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

UNIPROTKB|E2RE07 YPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 42/95 (44%), Positives = 65/95 (68%)

Query:    10 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
             +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC 
Sbjct:    21 YSCVHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCE 80

Query:    70 NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
             NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:    81 NCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115

GO:0051898 "negative regulation of protein kinase B signaling cascade" evidence=IEA

GO:0031641 "regulation of myelination" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2V3E2	YIPL5_ARATH	No assigned EC number	0.5238	0.9905	1.0	yes	no
Q9ESC7	YPEL1_MOUSE	No assigned EC number	0.4421	0.8962	0.8050	yes	no
Q9W2X7	YPL1_DROME	No assigned EC number	0.4526	0.8962	0.8333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0031020101 hypothetical protein (105 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	2e-41

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  131 bits (332), Expect = 2e-41
 Identities = 46/95 (48%), Positives = 66/95 (69%)

Query: 10  FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS 69
           +SC++C   LA H D+ISK+F  + G+AY+F+  +NVV G  ED+QM+TG++T+  I+C 
Sbjct: 15  YSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQMLTGLHTVRDIFCV 74

Query: 70  NCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 104
            CG  LGW Y  AY+  QK+KEG FILE+  + K 
Sbjct: 75  GCGTTLGWKYEFAYEESQKYKEGKFILERALITKI 109

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	100.0
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	96.21
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	94.92
PRK00222	142	methionine sulfoxide reductase B; Provisional	94.86
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	94.7
PRK05508	119	methionine sulfoxide reductase B; Provisional	94.13
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	92.88
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	90.92
PF14976	150	FAM72: FAM72 protein	88.36
KOG0856	146	consensus Predicted pilin-like transcription facto	88.26
COG0229	140	Conserved domain frequently associated with peptid	83.09

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=2.7e-50  Score=286.57  Aligned_cols=102  Identities=45%  Similarity=0.919  Sum_probs=97.5

Q ss_pred             ccCC-CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            3 EFDG-RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         3 ~l~g-~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      ++.+ ++.|+|++|+||||.++|||||+|+|++|+||||++|+||+.|+.|+|.|+||+|+|+||+|+.|++.|||||+.
T Consensus         8 ~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~~GWkYe~   87 (122)
T KOG3399|consen    8 MLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTGLGWKYEH   87 (122)
T ss_pred             HhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCCcceeeee
Confidence            3454 379999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCceecCeEEEEeeccccc
Q 034010           82 AYDLKQKWKEGNFILEKFKMLKE  104 (106)
Q Consensus        82 A~e~sqkYKEGkfILE~~~i~~~  104 (106)
                      |||+||||||||||||+++|.++
T Consensus        88 a~e~sQkyKEGk~ilE~~~i~~~  110 (122)
T KOG3399|consen   88 AYEKSQKYKEGKFILELAEIFKP  110 (122)
T ss_pred             ccCchhhhcCcchHHHHHHhcCC
Confidence            99999999999999999999864

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=100.00  E-value=5.6e-34  Score=192.24  Aligned_cols=88  Identities=43%  Similarity=0.836  Sum_probs=84.4

Q ss_pred             EEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeeccc----EEEeeeeeccCCCceeeEEEEecc
Q 034010            9 FFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGM----YTIAKIYCSNCGQELGWHYLRAYD   84 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~----h~V~dI~C~~C~~~lGWkY~~A~e   84 (106)
                      +|.|++|++|||++++|+|  |+|+.|+||||+   ||..++++++.|+||.    |+|+||+|++|++.|||||+.|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7777888899999999    999999999999999999999999


Q ss_pred             cCCceecCeEEEEeeccc
Q 034010           85 LKQKWKEGNFILEKFKML  102 (106)
Q Consensus        85 ~sqkYKEGkfILE~~~i~  102 (106)
                      + |+||||+||||++.|.
T Consensus        77 ~-~~~k~g~file~~~i~   93 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASIS   93 (96)
T ss_pred             h-HhhhCCEEEEEhhHEE
Confidence            9 9999999999999885

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=96.21  E-value=0.0023  Score=45.37  Aligned_cols=88  Identities=20%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             EEEcccCCCCcCCCCCceecceeC--CCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEecccC
Q 034010            9 FFSCRNCLNPLAFHHDLISKTFKA--QTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDLK   86 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G--~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A~e~s   86 (106)
                      .+-|++|.+.++..+||-.-.-+.  --.+.  |...+.+...|.+......+.+....|+|.+|+..+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            578999999999999986642110  01122  33566666666664445668899999999999999998776544444


Q ss_pred             CceecCeEEEEe
Q 034010           87 QKWKEGNFILEK   98 (106)
Q Consensus        87 qkYKEGkfILE~   98 (106)
                      .-.|.-.|.++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            556666666443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=94.92  E-value=0.035  Score=40.51  Aligned_cols=68  Identities=22%  Similarity=0.444  Sum_probs=42.2

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|-+.++    -|....|=.-.+..+-.-.+...+|..  -|+.. ..|.|.+|+.+||--...
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  105 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEVVAYERDES--HGMIR-TEVRCRNCDAHLGHVFDD  105 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCceEEeecCC--CCcEE-EEEEecCCCCccCcccCC
Confidence            458999999999987764    466666633333443111122333322  24443 579999999999975543

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=94.86  E-value=0.027  Score=41.41  Aligned_cols=69  Identities=20%  Similarity=0.413  Sum_probs=42.9

Q ss_pred             CCCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            6 GRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      .+-+|.|+.|+++|=+.++    -|....|=.-.+..+-.-.+...+|+  .-|+.. ..|.|..|+.+||--...
T Consensus        40 ~~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~R-tEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         40 EKGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDT--SHGMVR-TEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             CCeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeecc--CCCceE-EEEEeCCCCCccCcccCC
Confidence            3458999999999987743    46666774443444322222222332  123322 579999999999986644

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=94.70  E-value=0.037  Score=39.81  Aligned_cols=72  Identities=21%  Similarity=0.414  Sum_probs=44.2

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEeccc
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDL   85 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A~e~   85 (106)
                      +-+|.|+.|+++|=+.+    .-|....|=.-.+..+..-.+...+|..  -|+. -..|.|.+|+.+||=-......+
T Consensus        35 ~G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~-R~Ev~C~~Cg~HLGHVF~DGp~~  106 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSD----TKFDSGCGWPSFWQPIPGDAVKEREDFS--HGMV-RTEVRCARCGSHLGHVFDDGPPP  106 (124)
T ss_dssp             SEEEEETTTS-EEEEGG----GEETSSSSSSEESSCSSTTSEEEEEEEC--TSSE-EEEEEETTTCCEEEEEESTSSTT
T ss_pred             CEEEEcCCCCCccccCc----ccccCCcCCccccCcCChHHEEEecccc--CCce-EEEEEecCCCCccccEeCCCCCC
Confidence            45899999999987654    3477677733334443332233333322  2444 45689999999999866655443

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=94.13  E-value=0.067  Score=38.38  Aligned_cols=64  Identities=28%  Similarity=0.550  Sum_probs=42.2

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=+.++    -|....|=.-.+..+-|. +...+|..   |  .-..|.|+.|+.+||--..
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~--~RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G--RRTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C--cEEEEEeCCCCCccCcccC
Confidence            458999999999987754    477777733334444332 33333433   2  2467999999999997543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=92.88  E-value=0.096  Score=42.26  Aligned_cols=63  Identities=30%  Similarity=0.600  Sum_probs=42.3

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=++++    -|....| ++| +..+-|-.. ..++..   |+  -..|.|..|+++||--..
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF-~~~~~~~~~-~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSF-DDEIPGAVK-RLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCc-CcccCCccE-EEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            458999999999987653    4666777 454 555544322 222222   33  478999999999998554

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=90.92  E-value=0.28  Score=42.55  Aligned_cols=70  Identities=11%  Similarity=0.096  Sum_probs=43.8

Q ss_pred             CCCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEe
Q 034010            6 GRPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRA   82 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A   82 (106)
                      .+-+|.|+.|+++|=+++    .-|....|=.-.+..+-+-.+...+|.  .-|++. ..|.|+.|+.+||--....
T Consensus       415 ~~G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~--s~g~~R-~Ev~c~~c~~HLGHvf~dg  484 (521)
T PRK14018        415 KPGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDF--SYNMRR-TEVRSRAADSHLGHVFPDG  484 (521)
T ss_pred             CCEEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeecc--CCCceE-EEEEECCCCCcCCcccCCC
Confidence            345899999999998775    347666773333333322222223332  224443 4799999999999866543

>PF14976 FAM72: FAM72 protein

Probab=88.36  E-value=1.2  Score=33.22  Aligned_cols=62  Identities=23%  Similarity=0.437  Sum_probs=39.0

Q ss_pred             EEEcccCCCCcCCCCCceecceeCCCCcEEEeeccccccc----Ccceeeeeeccc--------EEEeeeeeccCCCcee
Q 034010            9 FFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVL----GRKEDKQMITGM--------YTIAKIYCSNCGQELG   76 (106)
Q Consensus         9 ~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~----g~~e~r~m~TG~--------h~V~dI~C~~C~~~lG   76 (106)
                      +..|++|.+-|+...           =||.|..+ .|+..    -||....-.+|.        =.++|+-|..|+..||
T Consensus        15 ~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vG   82 (150)
T PF14976_consen   15 ILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVG   82 (150)
T ss_pred             EEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeee
Confidence            468999998876532           25655554 33332    122222223333        3699999999999999


Q ss_pred             eEEEEe
Q 034010           77 WHYLRA   82 (106)
Q Consensus        77 WkY~~A   82 (106)
                      +.++..
T Consensus        83 YhV~~P   88 (150)
T PF14976_consen   83 YHVVVP   88 (150)
T ss_pred             eEEEEE
Confidence            988754

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=88.26  E-value=0.67  Score=34.32  Aligned_cols=65  Identities=23%  Similarity=0.486  Sum_probs=39.3

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeee-ecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQM-ITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m-~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|..|.++|-...    .-|....| +|| |+.+ +  .|....+.. .-|.+ =.+|.|..|+.+||--.+
T Consensus        52 ~GvY~C~~C~~pLykS~----tKfdsgcGWPAF-~e~i-~--~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~  118 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKST----TKFDSGCGWPAF-FEAI-G--PGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFK  118 (146)
T ss_pred             CceEEEeecCCcccccc----ccccCCCCCchh-hhcc-C--CCceeeccccCCCCc-ceEEEEeecCCceeeeec
Confidence            46999999999997754    35766666 454 3322 1  222111111 11122 357899999999997544

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=83.09  E-value=2.2  Score=31.49  Aligned_cols=65  Identities=26%  Similarity=0.492  Sum_probs=41.5

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWH   78 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWk   78 (106)
                      +-+|.|+.|+.+|=++++    -|....|=--.+..+.+-.+...+|+  .-|++. ..|.|.+|+++||--
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~R-tEVrc~~c~sHLGHV  104 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVR-TEVRCANCDSHLGHV  104 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEE-EEEEecCCCCccccc
Confidence            459999999999977654    46666663222344333333334443  335544 368999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	96.06
3ga3_A	133	Interferon-induced helicase C domain-containing pr	94.6
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	94.22
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	94.2
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	93.91
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	93.82
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	93.62
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	93.36
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	93.32
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	93.19
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	92.84
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	90.06
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	88.71
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	88.09
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	86.7

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=96.06  E-value=0.0034  Score=45.22  Aligned_cols=93  Identities=22%  Similarity=0.256  Sum_probs=59.2

Q ss_pred             CCEEEcccCCCCcCCCCCceec--ceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEecc
Q 034010            7 RPFFSCRNCLNPLAFHHDLISK--TFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYD   84 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A~e   84 (106)
                      .-.+.|++|.+.++..+||-.-  +-+=.-+++  |...+.+..+|..-.....+...-..|.|.+|+..+|-....---
T Consensus        11 ~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~~   88 (145)
T 3eqt_A           11 HVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKSV   88 (145)
T ss_dssp             GCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETTE
T ss_pred             heEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEeccc
Confidence            4568999999999999997433  111011111  123333332333211224556778899999999999887765555


Q ss_pred             cCCceecCeEEEEeecc
Q 034010           85 LKQKWKEGNFILEKFKM  101 (106)
Q Consensus        85 ~sqkYKEGkfILE~~~i  101 (106)
                      +=.-.|.-.|+||...-
T Consensus        89 ~LP~LkIksFVve~~~g  105 (145)
T 3eqt_A           89 KLPVLKVRSMLLETPQG  105 (145)
T ss_dssp             EEEEECGGGEEEEETTE
T ss_pred             cCceEeEEEEEEEcCCC
Confidence            56777888898887544

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=94.60  E-value=0.029  Score=39.79  Aligned_cols=88  Identities=19%  Similarity=0.195  Sum_probs=56.7

Q ss_pred             CEEEcccCCCCcCCCCCceec--ceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEeccc
Q 034010            8 PFFSCRNCLNPLAFHHDLISK--TFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRAYDL   85 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A~e~   85 (106)
                      -.+-|++|.+.++..+||-.-  +-+=.-+++  |...+.+..-+...+. ..+...-..|.|. |+..+|-....---+
T Consensus        11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~   86 (133)
T 3ga3_A           11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLD   86 (133)
T ss_dssp             EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEE
T ss_pred             EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEecccc
Confidence            458999999999999997432  211111122  1233433322222233 4677888999999 999988876654444


Q ss_pred             CCceecCeEEEEee
Q 034010           86 KQKWKEGNFILEKF   99 (106)
Q Consensus        86 sqkYKEGkfILE~~   99 (106)
                      =.-.|.-.|+||..
T Consensus        87 LP~LkIksFVve~~  100 (133)
T 3ga3_A           87 LPCLKIRNFVVVFK  100 (133)
T ss_dssp             EEEECGGGEEEEET
T ss_pred             CceEEEEEEEEEcC
Confidence            66778888888863

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=94.22  E-value=0.033  Score=40.08  Aligned_cols=67  Identities=18%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|=++++    -|....|=--.+..+-+ .+...+|+.  -|+.. ..|.|..|+.+||--...
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~D  106 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFND  106 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCC
Confidence            458999999999877653    46666773333343333 333344432  24432 469999999999986543

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=94.20  E-value=0.027  Score=39.25  Aligned_cols=89  Identities=22%  Similarity=0.339  Sum_probs=57.9

Q ss_pred             CCCEEEcccCCCCcCCCCCceec--ceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeec--cCCCceeeEEEE
Q 034010            6 GRPFFSCRNCLNPLAFHHDLISK--TFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS--NCGQELGWHYLR   81 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~--~C~~~lGWkY~~   81 (106)
                      |...+.|++|.+.+++.+||-.-  +-+=.-+++|  ...+.+...+. .+. ..+.++-..|.|.  +|+..+|-....
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   77 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKY   77 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEe
Confidence            56779999999999999997322  1111111111  23333322222 222 3567888999999  999999987765


Q ss_pred             ecccCCceecCeEEEEe
Q 034010           82 AYDLKQKWKEGNFILEK   98 (106)
Q Consensus        82 A~e~sqkYKEGkfILE~   98 (106)
                      ---+=.-.|.-.|+||.
T Consensus        78 k~~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           78 KTFEIPVIKIESFVVED   94 (121)
T ss_dssp             TTEEEEEECGGGEEEEE
T ss_pred             ccccCceEEEEEEEEEe
Confidence            54456777888888886

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=93.91  E-value=0.07  Score=38.32  Aligned_cols=81  Identities=23%  Similarity=0.390  Sum_probs=56.5

Q ss_pred             CCCEEEcccCCCCcCCCCCc----------eecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeec--cCCC
Q 034010            6 GRPFFSCRNCLNPLAFHHDL----------ISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS--NCGQ   73 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~l----------iSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~--~C~~   73 (106)
                      +.-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+.. + ...+..+-..|+|.  +|+.
T Consensus        24 ~~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~~-k-~f~d~~~~g~I~C~~~~Cg~   91 (145)
T 2qfd_A           24 ENKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPKP-K-QFSSFEKRAKIFCARQNCSH   91 (145)
T ss_dssp             CCCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSSC-C-CCSSEEEEEEEEECSTTTCC
T ss_pred             cceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCccc-c-hhhceeCCceEEeCCcccCc
Confidence            34568999999999999998          444554          22333311111 1 25566788999999  9999


Q ss_pred             ceeeEEEEecccCCceecCeEEEEe
Q 034010           74 ELGWHYLRAYDLKQKWKEGNFILEK   98 (106)
Q Consensus        74 ~lGWkY~~A~e~sqkYKEGkfILE~   98 (106)
                      .+|-....---+-.-.|.-.|+||.
T Consensus        92 ~WG~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           92 DWGIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEEEETTEEEEEECGGGEEEEC
T ss_pred             chhceEEEccccCceEEEEEEEEEe
Confidence            9998765544446677888899986

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=93.82  E-value=0.053  Score=39.07  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=41.7

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|=+++    .-|....|=.-.+..+-.-.+...+|+.  -|+. -..|.|+.|+.+||--...
T Consensus        41 ~G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             SEEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEE--TTEE-EEEEEETTTCCEEEEEESC
T ss_pred             CEEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCC--CCcE-EEEEEeCCCCCccCceeCC
Confidence            45899999999987654    3476667733333333211122233332  2443 3578999999999986544

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=93.62  E-value=0.048  Score=38.35  Aligned_cols=63  Identities=19%  Similarity=0.418  Sum_probs=38.4

Q ss_pred             CEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEE
Q 034010            8 PFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHY   79 (106)
Q Consensus         8 ~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY   79 (106)
                      -+|.|+.|.++|=+.++    -|....| ++| +..+-.-.+-..+++   .+.. ...|.|++|+.+||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF-~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHS----KYAHSSPWPAF-TETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTS----CCCCCSSSCCB-SCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCC----cccCCCCCcee-ecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            48999999999987765    3666666 443 232211111112222   1221 35799999999999743

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=93.32  E-value=0.046  Score=40.06  Aligned_cols=67  Identities=24%  Similarity=0.441  Sum_probs=41.8

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=+.++    -|....|=.-.+..+-+-.+...+|..  -|+ .-..|.|..|+.+||--..
T Consensus        71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred             CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence            458999999999876653    466666733333433222222333332  244 3457999999999998554

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=93.19  E-value=0.05  Score=38.44  Aligned_cols=89  Identities=21%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             CCCEEEcccCCCCcCCCCCceec--ceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeec--cCCCceeeEEEE
Q 034010            6 GRPFFSCRNCLNPLAFHHDLISK--TFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCS--NCGQELGWHYLR   81 (106)
Q Consensus         6 g~~~y~C~~C~thLa~~~~liSk--~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~--~C~~~lGWkY~~   81 (106)
                      |...+.|++|.+.++..+||-.-  +-+=.-+++  |...+.+..-+. .+. .-+.++-..|.|.  +|+..+|-....
T Consensus         4 ~~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~y   79 (131)
T 4a2v_A            4 GQKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKY   79 (131)
T ss_dssp             -CCEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEE
T ss_pred             cceEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEee
Confidence            45789999999999999997322  111011111  122333322221 222 3466788899999  999998876544


Q ss_pred             eccc-CCceecCeEEEEe
Q 034010           82 AYDL-KQKWKEGNFILEK   98 (106)
Q Consensus        82 A~e~-sqkYKEGkfILE~   98 (106)
                      ---+ =.-.|.-.|+||.
T Consensus        80 k~~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           80 LTFDNLPVIKIKSFVMES   97 (131)
T ss_dssp             TTEEEEEEECGGGEEECC
T ss_pred             cCcccCceEeEEEEEEEe
Confidence            3323 4567788888876

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=92.84  E-value=0.052  Score=37.13  Aligned_cols=65  Identities=14%  Similarity=0.348  Sum_probs=39.0

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCCcEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHY   79 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY   79 (106)
                      +-+|.|+.|.++|=+.+    .-|....|=.-.+..+-.-.+...++.   .+ +.-..|.|+.|+.+||--.
T Consensus        11 ~G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~-~~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           11 PGVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NR-SEALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             SEEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TS-TTEEEEEETTTCCEEEEEE
T ss_pred             CEEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CC-CCEEEEEeCCCCCccCccc
Confidence            45899999999986655    346666673333333321111111221   12 1246899999999999755

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=90.06  E-value=0.076  Score=38.44  Aligned_cols=67  Identities=21%  Similarity=0.473  Sum_probs=41.7

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|=++++    -|....| ++| +..+-.-.+...+|+.  -|+. -..|.|..|+.+||--...
T Consensus        59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF-~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           59 DGIYRCICCGTDLFDSET----KFDSGTGWPSF-YDVVSEHNIKLREDRS--LGMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             CSEEEETTTTEEEEEGGG----SCCSTTCCSEE-SCCSCTTSEECCCCBT--TSSC-EEEEEETTEEEEEEEEEEC
T ss_pred             CEEEEecCCCCcccCCcc----cccCCCCCccc-CcccCCCceEEeeCCC--CCce-EEEEEeCCCCCcCCcccCC
Confidence            458999999999876653    4766677 443 4433221222233332  2333 3568999999999986654

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=88.71  E-value=0.26  Score=39.29  Aligned_cols=67  Identities=15%  Similarity=0.220  Sum_probs=41.5

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLR   81 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~   81 (106)
                      +-+|.|+.|+++|=+++    .-|....| ++| +..+-.-.+...+|+.  -|+. -..|.|..|+.+||--...
T Consensus       207 ~G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF-~~~i~~~~v~~~~D~s--~gm~-RtEv~c~~c~~HLGHVF~D  274 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAK----DKFASGCGWPSF-SRPLSKELIHYYKDLS--HGME-RIEVRSRSGSAHLGHVFTD  274 (313)
T ss_dssp             SEEEEETTTCCEEEEGG----GBCCCCSSSCEE-SSCSSGGGEEEEEECC--TTCC-EEEEEESSSCCEEEEEESC
T ss_pred             CeEEEecCCCccccCCC----ccccCCCCCccc-CcccCCCceEEeecCC--CCcE-EEEEECCCCCCccCcccCC
Confidence            45899999999986654    34776677 442 3333111122223332  2443 3579999999999985543

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=88.09  E-value=0.097  Score=38.01  Aligned_cols=66  Identities=26%  Similarity=0.514  Sum_probs=38.5

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=++++    -|....| ++| +..+-.-.+...+|..  -|+. =..|.|..|+.+||--..
T Consensus        48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF-~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSF-FAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             SEEEEETTTCCEEEEECT----TCCCCTTSSTT-EEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             CEEEEccCCCCccccCcc----cccCCCCCccc-ccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            458999999999876653    4655566 332 2222111111122221  2333 257899999999997554

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=86.70  E-value=0.19  Score=36.06  Aligned_cols=66  Identities=24%  Similarity=0.465  Sum_probs=39.2

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeeccccc--------ccCcceeeeeecccEEEeeeeeccCCCceee
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNV--------VLGRKEDKQMITGMYTIAKIYCSNCGQELGW   77 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv--------~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGW   77 (106)
                      +-+|.|+.|+++|=++++    -|....| ++  |.+.+++        .+...+|..  -|+. -..|.|+.|+.+||=
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS--F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGH  105 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPS--FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGH  105 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSB--BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChh--hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCc
Confidence            458999999999876653    4655555 33  2333321        111122221  1333 356999999999998


Q ss_pred             EEEE
Q 034010           78 HYLR   81 (106)
Q Consensus        78 kY~~   81 (106)
                      -...
T Consensus       106 VF~D  109 (143)
T 2l1u_A          106 VFPD  109 (143)
T ss_dssp             EECC
T ss_pred             ccCC
Confidence            6643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	92.42
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	91.03

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=92.42  E-value=0.032  Score=38.30  Aligned_cols=68  Identities=12%  Similarity=0.144  Sum_probs=41.6

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEEEe
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYLRA   82 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~~A   82 (106)
                      +-+|.|+.|+++|=..++    -|....| ++| ++.+-+-......+.  .-|+-. ..|.|..|+.+||=-....
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF-~~~i~~~~v~~~~d~--s~gm~R-~Ev~C~~Cg~HLGHVF~DG  108 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSF-TRPIDAKSVTEHDDF--SFNMRR-TEVRSRAADSHLGHVFPDG  108 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEE-SSCSSTTSEEEEEEC--CTTSCE-EEEEETTTCCEEEEEESCS
T ss_pred             cCceEeccccceeeehhh----cccCCccceee-ccccccccccceecc--cccccc-eeeEecCCCCccCcccCCC
Confidence            458999999999875543    3766666 444 443333222222221  123322 4789999999999865443

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=91.03  E-value=0.047  Score=37.42  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=39.4

Q ss_pred             CCEEEcccCCCCcCCCCCceecceeCCCC-cEEEeecccccccCcceeeeeecccEEEeeeeeccCCCceeeEEE
Q 034010            7 RPFFSCRNCLNPLAFHHDLISKTFKAQTG-QAYMFSNAMNVVLGRKEDKQMITGMYTIAKIYCSNCGQELGWHYL   80 (106)
Q Consensus         7 ~~~y~C~~C~thLa~~~~liSk~f~G~~G-~AyLf~~v~Nv~~g~~e~r~m~TG~h~V~dI~C~~C~~~lGWkY~   80 (106)
                      +-+|.|+.|+++|=+.++    -|....| ++| ++.+-+-+. ..+|.  .-|+ .=..|.|++|+.+||--..
T Consensus        39 ~G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF-~~~i~~~v~-~~~D~--s~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          39 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSF-TKPIEEEVE-EKLDT--SHGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             SEEEEESSTTCEEEETTT----CCCCCSSSCCE-EESCCCSEE-EECCC--CTTC-CCCEEEESSCTTCCCEEEE
T ss_pred             CceEEeccccchhhhhhh----hhccCCcccee-ecccccceE-EEecC--CCCc-cccceEecCCCCccCccCC
Confidence            458999999999977654    3666666 444 343332211 12221  1121 2357899999999996553