Citrus Sinensis ID: 034024

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MITRSNLAEQLREYQNRskhewasvsffsstsnisssrvDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Flexible Loop (DISEMBL)
MITRSNLAEQLREYQNRSKHEWASVSFFsstsnisssRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQvrlarkkkrrmllplsm
Low Complexity Region (SEG)
MITRSNLAEQLREYQNRSKHEWAsvsffsstsnisssRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVrlarkkkrrmllplSM
Disordered region (IsUnstruct)
*********************WASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLA*************
Disordered Region (DISOPRED)
*****N*AEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMK**************MLLPLS*
Disordered Region (DISEMBL)
MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Disordered Region (DISPRO)
*ITRSNLAEQLREYQNRSKHEWASVSFFSS***ISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRR*LL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
449452957	150	PREDICTED: uncharacterized protein LOC10	1.0	0.706	0.924	6e-48
225459824	106	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.896	6e-47
224083223	106	predicted protein [Populus trichocarpa]	1.0	1.0	0.896	1e-37
15217950	106	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.867	1e-36
217071472	108	unknown [Medicago truncatula]	1.0	0.981	0.833	6e-36
356517544	107	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.831	6e-36
356508923	107	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.831	1e-35
297839493	106	hypothetical protein ARALYDRAFT_895497 [	1.0	1.0	0.849	1e-35
134304910	106	unknown [Brassica juncea]	1.0	1.0	0.867	8e-31
297845016	107	hypothetical protein ARALYDRAFT_889497 [	1.0	0.990	0.794	2e-29

>gi|449452957|ref|XP_004144225.1| PREDICTED: uncharacterized protein LOC101213289 [Cucumis sativus] gi|449533749|ref|XP_004173834.1| PREDICTED: uncharacterized protein LOC101223985 isoform 1 [Cucumis sativus]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/106 (92%), Positives = 102/106 (96%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNL EQLREYQ RSKHEWASVSFFSSTSNI+SSRVDVVIFVIWEL+IL+FLVFSAV
Sbjct: 45  MITRSNLVEQLREYQIRSKHEWASVSFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAV 104

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           SLYFRHM+LA ILV ITMLLLLCMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 105 SLYFRHMQLAFILVCITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 150

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459824|ref|XP_002285918.1| PREDICTED: uncharacterized protein LOC100248789 [Vitis vinifera] gi|302141681|emb|CBI18884.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (484), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 102/106 (96%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNLAEQLREYQ RSKH+WASVSFFSSTSN++SSRVDVV+FVIWELVILAFLVFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNLTSSRVDVVVFVIWELVILAFLVFSAV 60

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           SLYFRH+RLA ILV +TMLLLLCMK+TKQVRL RKKKRRMLLPLSM
Sbjct: 61  SLYFRHIRLAFILVIVTMLLLLCMKITKQVRLDRKKKRRMLLPLSM 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083223|ref|XP_002306967.1| predicted protein [Populus trichocarpa] gi|118485981|gb|ABK94835.1| unknown [Populus trichocarpa] gi|222856416|gb|EEE93963.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/106 (89%), Positives = 101/106 (95%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNLA+QLREYQ RSKH+WASVSFFSS SNISSSRVDVV+FVIWEL I+AFLVFSAV
Sbjct: 1   MITRSNLADQLREYQIRSKHDWASVSFFSSASNISSSRVDVVVFVIWELFIIAFLVFSAV 60

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           SLYFRHMRLA ILV IT+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 61  SLYFRHMRLAFILVCITLLLLICMKVTKQVRLARKKKRRMLLPLSM 106

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217950|ref|NP_173470.1| uncharacterized protein [Arabidopsis thaliana] gi|22655238|gb|AAM98209.1| unknown protein [Arabidopsis thaliana] gi|25084019|gb|AAN72156.1| unknown protein [Arabidopsis thaliana] gi|332191854|gb|AEE29975.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 100/106 (94%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNLAEQLREYQ RSKH+WASVSFFSSTSN SSSRVDVV+FVIWELVILAF VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFFVFSAV 60

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           SLYF+ ++LA ILV +T+LLL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 61  SLYFKRLQLAFILVCVTLLLLICMKVTKQVRLARKKKRRMLLPLSM 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071472|gb|ACJ84096.1| unknown [Medicago truncatula]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/108 (83%), Positives = 101/108 (93%), Gaps = 2/108 (1%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTS-NIS-SSRVDVVIFVIWELVILAFLVFS 58
           MITRSNLAEQLR+YQ RSKH+WASVSFFSSTS NI+ +S+VDVV+FVIWELVILAFLVFS
Sbjct: 1   MITRSNLAEQLRDYQIRSKHDWASVSFFSSTSSNITNTSKVDVVVFVIWELVILAFLVFS 60

Query: 59  AVSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
            VSL F+H++LA ILV IT+LLLLCMK+TKQVRLARKKKRRMLLPLSM
Sbjct: 61  VVSLCFKHIQLAFILVCITVLLLLCMKITKQVRLARKKKRRMLLPLSM 108

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517544|ref|XP_003527447.1| PREDICTED: uncharacterized protein LOC100814378 [Glycine max]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSS-RVDVVIFVIWELVILAFLVFSA 59
           MITRSNL EQLREYQ RSKH+WASVSFFSSTS+  ++ RVDVV+FVIWELVILAFLVFS 
Sbjct: 1   MITRSNLVEQLREYQIRSKHDWASVSFFSSTSSNITTSRVDVVVFVIWELVILAFLVFSV 60

Query: 60  VSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           VSLYF+H+RLA ILV IT+LLLLCMK+TKQVRLARKK+RRMLLPLSM
Sbjct: 61  VSLYFKHIRLAFILVCITILLLLCMKITKQVRLARKKRRRMLLPLSM 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508923|ref|XP_003523202.1| PREDICTED: uncharacterized protein LOC100812901 [Glycine max]

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 99/107 (92%), Gaps = 1/107 (0%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSS-RVDVVIFVIWELVILAFLVFSA 59
           MITRSNL EQLREYQ RSKH+WASVSFFSSTS+  ++ RVDVV+FVIWELVILAFLVFS 
Sbjct: 1   MITRSNLVEQLREYQIRSKHDWASVSFFSSTSSNITTSRVDVVLFVIWELVILAFLVFSV 60

Query: 60  VSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           VSLYF+H+RLA ILV IT+LLLLCMK+TKQVRLARKK+RRMLLPLSM
Sbjct: 61  VSLYFKHIRLAFILVCITILLLLCMKITKQVRLARKKRRRMLLPLSM 107

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839493|ref|XP_002887628.1| hypothetical protein ARALYDRAFT_895497 [Arabidopsis lyrata subsp. lyrata] gi|297333469|gb|EFH63887.1| hypothetical protein ARALYDRAFT_895497 [Arabidopsis lyrata subsp. lyrata]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/106 (84%), Positives = 98/106 (92%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNLAEQLREYQ RSKH+WASVSFFSSTSN SSSRVDVV+FVIWELVILAFLVFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFLVFSAV 60

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           S YFR ++LA ILV +T+LL +CMK+TKQVR ARKKKRRMLLPLSM
Sbjct: 61  SFYFRRLQLAFILVCVTLLLFVCMKITKQVRQARKKKRRMLLPLSM 106

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|134304910|gb|ABO71663.1| unknown [Brassica juncea]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 92/106 (86%), Positives = 100/106 (94%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVIFVIWELVILAFLVFSAV 60
           MITRSNLAEQLREYQ RSKH+WASVSFFSSTSN SSSRVDVV+FVIWELVILAFLVFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFLVFSAV 60

Query: 61  SLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           SLYF+ + LA ILV +T+LLLLCMK+TKQVR+ARKKKRRMLLPLSM
Sbjct: 61  SLYFKRLELAFILVCVTLLLLLCMKITKQVRVARKKKRRMLLPLSM 106

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845016|ref|XP_002890389.1| hypothetical protein ARALYDRAFT_889497 [Arabidopsis lyrata subsp. lyrata] gi|297336231|gb|EFH66648.1| hypothetical protein ARALYDRAFT_889497 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 96/107 (89%), Gaps = 1/107 (0%)

Query: 1   MITRSNLAEQLREYQNRSKHEWASVSFFSSTSNISSSRVDVVI-FVIWELVILAFLVFSA 59
           MITRSNLAEQLREYQ RSKH+WASVSFFSSTS+ SSS    V+ FVIWELVILAF VFSA
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSSFSSSSRVDVVVFVIWELVILAFFVFSA 60

Query: 60  VSLYFRHMRLAIILVSITMLLLLCMKVTKQVRLARKKKRRMLLPLSM 106
           VSLYF+ ++LA IL+ +T++LL+CMKVTKQVRLARKKKRRMLLPLSM
Sbjct: 61  VSLYFKRLQLAFILICVTLMLLICMKVTKQVRLARKKKRRMLLPLSM 107

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2034362	106	AT1G20460 "AT1G20460" [Arabido	0.849	0.849	0.7	1.2e-28
TAIR|locus:505006224	106	AT1G76185 "AT1G76185" [Arabido	0.849	0.849	0.677	6.4e-28

TAIR|locus:2034362 AT1G20460 "AT1G20460" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 63/90 (70%), Positives = 71/90 (78%)

Query:     1 MITRSNLAEQLREYQNRSKHEWAXXXXXXXXXXXXXXRVDVVIFVIWELVILAFLVFSAV 60
             MITRSNLAEQLREYQ RSKH+WA              RVDVV+FVIWELVILAF VFSAV
Sbjct:     1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFFVFSAV 60

Query:    61 SLYFRHMRLAIILVSITMLLLLCMKVTKQV 90
             SLYF+ ++LA ILV +T+LLL+CMKVTKQV
Sbjct:    61 SLYFKRLQLAFILVCVTLLLLICMKVTKQV 90

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006224 AT1G76185 "AT1G76185" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/90 (67%), Positives = 71/90 (78%)

Query:     1 MITRSNLAEQLREYQNRSKHEWAXXXXXXXXXXXXXXRVDVVIFVIWELVILAFLVFSAV 60
             MITRSNLAEQLREYQ RSKH+WA              RVDVV+FVIWELV+LA +VFSAV
Sbjct:     1 MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVMLALVVFSAV 60

Query:    61 SLYFRHMRLAIILVSITMLLLLCMKVTKQV 90
             SLYFR ++LA IL+ +T+LLLLCMK+TKQV
Sbjct:    61 SLYFRRLQLAFILLCVTLLLLLCMKITKQV 90


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.336   0.139   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      106        78   0.00091  102 3  10 21  0.35    28
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  130 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.00u 0.09s 10.09t   Elapsed:  00:00:01
  Total cpu time:  10.00u 0.09s 10.09t   Elapsed:  00:00:01
  Start:  Fri May 10 12:15:42 2013   End:  Fri May 10 12:15:43 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015548001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (106 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	85.81

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=85.81  E-value=0.61  Score=32.70  Aligned_cols=25  Identities=32%  Similarity=0.526  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034024           65 RHMRLAIILVSITMLLLLCMKVTKQ   89 (106)
Q Consensus        65 r~~~Ls~~~ic~~ilL~~~lkitrq   89 (106)
                      ||.-++++++++-|++.+++.++|.
T Consensus         1 RW~l~~iii~~i~l~~~~~~~~~rR   25 (130)
T PF12273_consen    1 RWVLFAIIIVAILLFLFLFYCHNRR   25 (130)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566666667777777766554

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00