Citrus Sinensis ID: 034030


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
MNTDITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
cccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccc
ccccccccccccccEEccccccHHHHccccHHHHHHHHHHHHHcHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccc
mntditasekpqypvidrnppftavvgnfntldylrfSSITGVSVVVGYLsgikpglkgpsmvtgGLIGLMGGFMYAYQNSagrlmgffpnegevaRYQKRGFSS
mntditasekpqypvidrnppFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
MNTDITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
**************VIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN**************
*****TA*EKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVA*********
*********KPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
******ASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKR****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
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MNTDITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query105
224089721105 predicted protein [Populus trichocarpa] 1.0 1.0 0.904 2e-48
297804546106 hypothetical protein ARALYDRAFT_915104 [ 0.971 0.962 0.892 1e-46
224137260105 predicted protein [Populus trichocarpa] 0.990 0.990 0.894 1e-46
21553735106 unknown [Arabidopsis thaliana] 0.971 0.962 0.882 4e-46
315937234102 hypothetical protein [Jatropha curcas] 0.971 1.0 0.892 6e-46
186511907106 uncharacterized protein [Arabidopsis tha 0.971 0.962 0.882 6e-46
2245001106 hypothetical protein [Arabidopsis thalia 0.971 0.962 0.882 1e-45
351720975101 uncharacterized protein LOC100306111 [Gl 0.961 1.0 0.871 5e-45
388513791101 unknown [Lotus japonicus] 0.961 1.0 0.871 8e-45
147799661116 hypothetical protein VITISV_010564 [Viti 0.952 0.862 0.87 1e-44
>gi|224089721|ref|XP_002308803.1| predicted protein [Populus trichocarpa] gi|118482707|gb|ABK93272.1| unknown [Populus trichocarpa] gi|118483785|gb|ABK93785.1| unknown [Populus trichocarpa] gi|222854779|gb|EEE92326.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/105 (90%), Positives = 99/105 (94%)

Query: 1   MNTDITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGP 60
           MNTDITAS KP+YPVIDRNP FT VVGNFNTLDY RF ++TGVSV VGYLSGIKPG+KGP
Sbjct: 1   MNTDITASAKPEYPVIDRNPEFTKVVGNFNTLDYCRFITLTGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS 105
           SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRGFSS 105




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804546|ref|XP_002870157.1| hypothetical protein ARALYDRAFT_915104 [Arabidopsis lyrata subsp. lyrata] gi|297315993|gb|EFH46416.1| hypothetical protein ARALYDRAFT_915104 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224137260|ref|XP_002322513.1| predicted protein [Populus trichocarpa] gi|222867143|gb|EEF04274.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|21553735|gb|AAM62828.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|315937234|gb|ADU56175.1| hypothetical protein [Jatropha curcas] Back     alignment and taxonomy information
>gi|186511907|ref|NP_567500.2| uncharacterized protein [Arabidopsis thaliana] gi|334186608|ref|NP_001190742.1| uncharacterized protein [Arabidopsis thaliana] gi|28416547|gb|AAO42804.1| At4g16450 [Arabidopsis thaliana] gi|110742933|dbj|BAE99362.1| hypothetical protein [Arabidopsis thaliana] gi|332658352|gb|AEE83752.1| uncharacterized protein [Arabidopsis thaliana] gi|332658353|gb|AEE83753.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2245001|emb|CAB10421.1| hypothetical protein [Arabidopsis thaliana] gi|7268395|emb|CAB78687.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351720975|ref|NP_001237706.1| uncharacterized protein LOC100306111 [Glycine max] gi|356555750|ref|XP_003546193.1| PREDICTED: uncharacterized protein LOC100819728 [Glycine max] gi|255627585|gb|ACU14137.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388513791|gb|AFK44957.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|147799661|emb|CAN72866.1| hypothetical protein VITISV_010564 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query105
TAIR|locus:2130649106 AT4G16450 "AT4G16450" [Arabido 0.990 0.981 0.876 6.2e-46
CGD|CAL0003931204 orf19.6607 [Candida albicans ( 0.790 0.406 0.333 4.5e-06
UNIPROTKB|Q59NK8204 CaO19.6607 "Putative uncharact 0.790 0.406 0.333 4.5e-06
UNIPROTKB|G5EHK5189 MGCH7_ch7g169 "Uncharacterized 0.904 0.502 0.308 1.7e-05
ASPGD|ASPL0000063679189 AN6976 [Emericella nidulans (t 0.790 0.439 0.325 0.00043
TAIR|locus:2130649 AT4G16450 "AT4G16450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 92/105 (87%), Positives = 98/105 (93%)

Query:     1 MNTDITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGP 60
             MNTDITA EK QYPV+DRNP FT VVGNF+TLDYLRFS+ITG+SV VGYLSGIKPG+KGP
Sbjct:     1 MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query:    61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQKRG-FS 104
             SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPN+GEVA YQKRG FS
Sbjct:    61 SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQKRGGFS 105




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0009853 "photorespiration" evidence=RCA;TAS
GO:0031966 "mitochondrial membrane" evidence=IDA
GO:0045271 "respiratory chain complex I" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
CGD|CAL0003931 orf19.6607 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59NK8 CaO19.6607 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|G5EHK5 MGCH7_ch7g169 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000063679 AN6976 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00060155
SubName- Full=Putative uncharacterized protein; (105 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query105
PLN0297597 PLN02975, PLN02975, complex I subunit 3e-57
pfam1078584 pfam10785, NADH-u_ox-rdase, NADH-ubiquinone oxidor 3e-27
>gnl|CDD|166616 PLN02975, PLN02975, complex I subunit Back     alignment and domain information
 Score =  171 bits (434), Expect = 3e-57
 Identities = 85/97 (87%), Positives = 93/97 (95%)

Query: 4   DITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMV 63
           DITAS+KP+YPV+DRNP FT VVGNF+ LDYLRF++ITGVSV VGYLSGIKPG++GPSMV
Sbjct: 1   DITASDKPEYPVVDRNPTFTKVVGNFSALDYLRFATITGVSVTVGYLSGIKPGIRGPSMV 60

Query: 64  TGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 100
           TGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK
Sbjct: 61  TGGLIGLMGGFMYAYQNSAGRLMGFFPNEGEVARYQK 97


Length = 97

>gnl|CDD|192666 pfam10785, NADH-u_ox-rdase, NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 105
PLN0297597 complex I subunit 100.0
PF1078586 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase co 100.0
>PLN02975 complex I subunit Back     alignment and domain information
Probab=100.00  E-value=8.4e-50  Score=275.55  Aligned_cols=97  Identities=88%  Similarity=1.471  Sum_probs=94.4

Q ss_pred             cccCCCCCCCCcccCCCCchhhhhccChhHHHHHHHHHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Q 034030            4 DITASEKPQYPVIDRNPPFTAVVGNFNTLDYLRFSSITGVSVVVGYLSGIKPGLKGPSMVTGGLIGLMGGFMYAYQNSAG   83 (105)
Q Consensus         4 ~i~~~~~p~YPvId~dP~f~rVv~nfR~sDy~~~a~~ta~~~~~~y~~~~~~~~~~p~m~~~~~iG~~gGfl~ayqrS~~   83 (105)
                      +|+..++|+|||||+||||+||++|||+|||++|+++|+++|+++|+.+.+|+.++|+|+++++||++||||+|||||++
T Consensus         1 ~~~~~~~P~YPlId~dP~f~rVv~yfr~sDY~~~a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aYq~S~~   80 (97)
T PLN02975          1 DITASDKPEYPVVDRNPTFTKVVGNFSALDYLRFATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAYQNSAG   80 (97)
T ss_pred             CCcccCCCCCCccCCCCChHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhhcccch
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCHHHHHHhhh
Q 034030           84 RLMGFFPNEGEVARYQK  100 (105)
Q Consensus        84 Rl~G~~EN~rEv~ry~~  100 (105)
                      |||||+||+||||+|+.
T Consensus        81 Rf~G~~EN~rEV~~~~~   97 (97)
T PLN02975         81 RLMGFFPNEGEVARYQK   97 (97)
T ss_pred             hhcCCCCCHHHHHhccC
Confidence            99999999999999983



>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00