Citrus Sinensis ID: 034046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccccccccHcccccc
Coil and Loop (DISEMBL)
MAAVVKKFFIASMFMWMAPLAILYAFNhnllpgstnltpysATLLSGFLAVISVNIVIAFYIYMAmrepsdkhepdpkFLAEAKasvsqptdkaevsseslkkke
Flexible Loop (DISEMBL)
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHEPDPKFLAEakasvsqptdkaevsseslkkke
Low Complexity Region (SEG)
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE
Disordered region (IsUnstruct)
***VVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAM***************************************
Disordered Region (DISOPRED)
*****KKFFIASMFMWMAPLAILYAFNHNLLPG********ATLLSGFLAVISVNIVIAFYIYMAMR**************************************
Disordered Region (DISEMBL)
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHEPDPKFLAEA**********************
Disordered Region (DISPRO)
*AAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPS*KHEPDPKFLAEAKA********************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
225423613	106	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.754	2e-38
224138548	105	predicted protein [Populus trichocarpa]	1.0	1.0	0.723	2e-38
356571479	104	PREDICTED: uncharacterized protein LOC10	0.971	0.980	0.711	8e-38
356548621	105	PREDICTED: uncharacterized protein LOC10	0.980	0.980	0.692	6e-37
449433513	106	PREDICTED: uncharacterized protein LOC10	1.0	0.990	0.676	1e-35
297843366	106	hypothetical protein ARALYDRAFT_470584 [	1.0	0.990	0.669	5e-33
15221269	106	vacuolar ATPase assembly integral membra	1.0	0.990	0.669	5e-33
297738017	92	unnamed protein product [Vitis vinifera]	0.866	0.989	0.75	7e-32
18402739	105	Vacuolar ATPase assembly integral membra	1.0	1.0	0.619	6e-27
297826617	105	hypothetical protein ARALYDRAFT_344930 [	1.0	1.0	0.619	9e-27

>gi|225423613|ref|XP_002274464.1| PREDICTED: uncharacterized protein LOC100256132 [Vitis vinifera]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/106 (75%), Positives = 90/106 (84%), Gaps = 1/106 (0%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V+KKFFIASM MW+AP+AILY FNHNL PGST L+ YSATLLSGF+AVISVNIVIAF
Sbjct: 1   MAGVIKKFFIASMLMWIAPIAILYGFNHNLFPGSTQLSSYSATLLSGFIAVISVNIVIAF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPT-DKAEVSSESLKKKE 105
           YI+MAM+EPSDKHEPDP FLA AKASVSQ T  + E  S+S  K+E
Sbjct: 61  YIFMAMKEPSDKHEPDPAFLAAAKASVSQSTPGETEDPSQSRDKQE 106

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138548|ref|XP_002326630.1| predicted protein [Populus trichocarpa] gi|222833952|gb|EEE72429.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 91/105 (86%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V+ KFF+ SM MWMAP+AILYAFNH+L+PG T L+P+S TL+SGF+AVISVNIVIAF
Sbjct: 1   MAGVIMKFFVTSMLMWMAPVAILYAFNHDLIPGITKLSPHSLTLMSGFVAVISVNIVIAF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           YIYMA++EPSDKHEPDP FLAEA+ASVSQ   K   SS+S+KK+E
Sbjct: 61  YIYMAIKEPSDKHEPDPAFLAEAEASVSQSAGKVGDSSQSVKKEE 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571479|ref|XP_003553904.1| PREDICTED: uncharacterized protein LOC100776528 [Glycine max]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 74/104 (71%), Positives = 94/104 (90%), Gaps = 2/104 (1%)

Query: 3   AVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYI 62
            V++KFF+AS+FMW  P+AILYAFNHN+LPG++NL+PYS TL+SGFLAVISVN+VIAFYI
Sbjct: 2   GVIQKFFVASLFMWAIPIAILYAFNHNILPGTSNLSPYSMTLVSGFLAVISVNVVIAFYI 61

Query: 63  YMAMREP-SDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           Y+AMREP +DKHEPDPKFLAEAKAS++Q T  A+  S++LKK++
Sbjct: 62  YLAMREPAADKHEPDPKFLAEAKASINQSTGDAQ-QSQTLKKEQ 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548621|ref|XP_003542699.1| PREDICTED: uncharacterized protein LOC100798366 [Glycine max]

 Score =  157 bits (398), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 93/104 (89%), Gaps = 1/104 (0%)

Query: 3   AVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYI 62
            V++KFF+AS+FMW  P+AILYAFNHN+LPG++NL+PYS TL+SGFLAVISVN+VIAFYI
Sbjct: 2   GVIQKFFVASLFMWAIPIAILYAFNHNILPGASNLSPYSMTLVSGFLAVISVNVVIAFYI 61

Query: 63  YMAMREPS-DKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           Y+A+REP+ DK EPDPKFLAEAKAS++Q T  A+  S++LKK++
Sbjct: 62  YLALREPTADKPEPDPKFLAEAKASINQSTGDAQQPSQALKKEQ 105

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433513|ref|XP_004134542.1| PREDICTED: uncharacterized protein LOC101206493 [Cucumis sativus]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 86/105 (81%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V+ KFFIAS+FMW+ P+ +L+ FNHN +PGST L P+S TLLSGFLAVISVN+VIA 
Sbjct: 1   MANVIMKFFIASLFMWITPITLLHGFNHNWIPGSTQLNPHSLTLLSGFLAVISVNVVIAI 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           YI MAM+EPS KHEPDP FLAEAKAS++Q T KA+  S++  KKE
Sbjct: 61  YIIMAMKEPSSKHEPDPTFLAEAKASINQSTGKADGPSQAQNKKE 105

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843366|ref|XP_002889564.1| hypothetical protein ARALYDRAFT_470584 [Arabidopsis lyrata subsp. lyrata] gi|297335406|gb|EFH65823.1| hypothetical protein ARALYDRAFT_470584 [Arabidopsis lyrata subsp. lyrata]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 86/106 (81%), Gaps = 1/106 (0%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V+ KF IASMFMW+ P+AILY FN+NLLPGST L+P+S TLLSGFLAV+SVNIVI F
Sbjct: 1   MAGVMHKFLIASMFMWILPVAILYGFNYNLLPGSTTLSPHSLTLLSGFLAVVSVNIVIVF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSE-SLKKKE 105
           YI MA++EP+DKH+PD  FLAEAK SVS+ T  A    + +LKK+E
Sbjct: 61  YICMALKEPADKHKPDAAFLAEAKDSVSKLTKGATSGDDHALKKQE 106

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221269|ref|NP_172069.1| vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein [Arabidopsis thaliana] gi|61742516|gb|AAX55079.1| hypothetical protein At1g05780 [Arabidopsis thaliana] gi|332189769|gb|AEE27890.1| vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/106 (66%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V+ KF IASMFMW+ P+AILY FNHNLLPGST L+P+S  LLSGFLAV+SVN VI F
Sbjct: 1   MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSE-SLKKKE 105
           YI MAM+EP+DKH+PD  FLAEAK SV++ T  A  S + +LKK+E
Sbjct: 61  YICMAMKEPADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQE 106

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738017|emb|CBI27218.3| unnamed protein product [Vitis vinifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 78/92 (84%), Gaps = 1/92 (1%)

Query: 15  MWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPSDKHE 74
           MW+AP+AILY FNHNL PGST L+ YSATLLSGF+AVISVNIVIAFYI+MAM+EPSDKHE
Sbjct: 1   MWIAPIAILYGFNHNLFPGSTQLSSYSATLLSGFIAVISVNIVIAFYIFMAMKEPSDKHE 60

Query: 75  PDPKFLAEAKASVSQPT-DKAEVSSESLKKKE 105
           PDP FLA AKASVSQ T  + E  S+S  K+E
Sbjct: 61  PDPAFLAAAKASVSQSTPGETEDPSQSRDKQE 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402739|ref|NP_565728.1| Vacuolar ATPase assembly integral membrane protein VMA21-like domain [Arabidopsis thaliana] gi|20198067|gb|AAD24847.2| expressed protein [Arabidopsis thaliana] gi|21594831|gb|AAM66048.1| unknown [Arabidopsis thaliana] gi|88011071|gb|ABD38898.1| At2g31710 [Arabidopsis thaliana] gi|330253481|gb|AEC08575.1| Vacuolar ATPase assembly integral membrane protein VMA21-like domain protein [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 85/105 (80%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V++KF IASMFMW+ P+AILY FN++LLPGST L+P+S TLLSGFLAV+SVN+VI F
Sbjct: 1   MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           YI +A++EP+DKH+PD  F+AEAK SV + T     +  +LKK+E
Sbjct: 61  YICLALKEPADKHKPDASFVAEAKDSVKKLTSGVTNTDPALKKQE 105

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826617|ref|XP_002881191.1| hypothetical protein ARALYDRAFT_344930 [Arabidopsis lyrata subsp. lyrata] gi|297327030|gb|EFH57450.1| hypothetical protein ARALYDRAFT_344930 [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 84/105 (80%)

Query: 1   MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
           MA V++KF IASMFMW+ P+AILY FN++LLPGST L+P+S TLLSGFLAV+SVN+VI F
Sbjct: 1   MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query: 61  YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
           YI +A++EP DKH+PD  F+AEAK SV + T     +  +LKK+E
Sbjct: 61  YICLALKEPVDKHKPDASFVAEAKDSVKKLTSGVTSTDPALKKQE 105

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2198703	106	AT1G05780 "AT1G05780" [Arabido	1.0	0.990	0.669	4.7e-32
TAIR|locus:2065903	105	AT2G31710 "AT2G31710" [Arabido	1.0	1.0	0.619	4.2e-31
SGD|S000003337	77	VMA21 "Integral membrane prote	0.676	0.922	0.302	0.00093

TAIR|locus:2198703 AT1G05780 "AT1G05780" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 71/106 (66%), Positives = 85/106 (80%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA V+ KF IASMFMW+ P+AILY FNHNLLPGST L+P+S  LLSGFLAV+SVN VI F
Sbjct:     1 MAGVMHKFLIASMFMWILPVAILYGFNHNLLPGSTTLSPHSLILLSGFLAVVSVNTVIVF 60

Query:    61 YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSE-SLKKKE 105
             YI MAM+EP+DKH+PD  FLAEAK SV++ T  A  S + +LKK+E
Sbjct:    61 YICMAMKEPADKHKPDAAFLAEAKDSVNKLTKGATSSDDHALKKQE 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2065903 AT2G31710 "AT2G31710" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 65/105 (61%), Positives = 85/105 (80%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA V++KF IASMFMW+ P+AILY FN++LLPGST L+P+S TLLSGFLAV+SVN+VI F
Sbjct:     1 MAGVMQKFLIASMFMWILPIAILYGFNNDLLPGSTTLSPHSLTLLSGFLAVVSVNVVIVF 60

Query:    61 YIYMAMREPSDKHEPDPKFLAEAKASVSQPTDKAEVSSESLKKKE 105
             YI +A++EP+DKH+PD  F+AEAK SV + T     +  +LKK+E
Sbjct:    61 YICLALKEPADKHKPDASFVAEAKDSVKKLTSGVTNTDPALKKQE 105

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

SGD|S000003337 VMA21 "Integral membrane protein that is required for V-ATPase function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query:     1 MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
             MA  V +  I  + ++ A + +L      ++      TP   TL+SG LA    N+V+  
Sbjct:     1 MAVDVPRAVINKLMLFTAAMVVLPVLTFFIIQ---QFTPN--TLISGGLAAAMANVVLIV 55

Query:    61 YIYMAMREPSDKHEPD 76
             YI +A RE ++ H+ D
Sbjct:    56 YIVVAFREDTEDHKVD 71


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105       105   0.00091  102 3  11 22  0.39    30
                                                     29  0.39    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  508 (54 KB)
  Total size of DFA:  101 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.84u 0.11s 11.95t   Elapsed:  00:00:01
  Total cpu time:  11.84u 0.11s 11.95t   Elapsed:  00:00:01
  Start:  Mon May 20 15:22:25 2013   End:  Mon May 20 15:22:26 2013

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0070072 "vacuolar proton-transporting V-type ATPase complex assembly" evidence=IMP;IPI

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030115001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (106 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
pfam09446	66	pfam09446, VMA21, VMA21-like domain	3e-15

>gnl|CDD|150200 pfam09446, VMA21, VMA21-like domain

 Score = 63.8 bits (156), Expect = 3e-15
 Identities = 22/66 (33%), Positives = 37/66 (56%)

Query: 1  MAAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAF 60
            +V++K    +  M + P+   + F   +L G   L+    T+ SG LAV++VN+V+A 
Sbjct: 1  PVSVIQKLLFFTALMIVLPVLTFFIFKFYVLEGFFGLSRLDNTIYSGILAVVAVNVVLAG 60

Query: 61 YIYMAM 66
          YIY+A 
Sbjct: 61 YIYVAF 66

This presumed short domain appears to contain two potential transmembrane helices. VMA21 is localised in the ER where it is needed as an accessory factor for assembly of the V0 component of the vacuolar ATPase. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF09446	66	VMA21: VMA21-like domain; InterPro: IPR019013 The	99.92
KOG4783	102	consensus Uncharacterized conserved protein [Funct	99.75

>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []

Probab=99.92  E-value=1.1e-24  Score=141.65  Aligned_cols=65  Identities=40%  Similarity=0.676  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 034046            2 AAVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAM   66 (105)
Q Consensus         2 ~~Vi~KLl~fSiaM~~lPl~~fF~~~~~lf~g~~~ls~~~~t~ysgi~AVv~vNvVL~~YI~~A~   66 (105)
                      ++|+.||++||++|+++|+++||++++++|+|.+++++++|++|||++||+++|+||++||++||
T Consensus         2 ~~vi~kLl~fs~~M~~lPl~~ff~~~~~~~~~~~~~~~~~~~~~sgi~Avi~vnvVl~~Yi~~A~   66 (66)
T PF09446_consen    2 ASVIQKLLFFSVLMFTLPLGTFFGFKYFLFDGFFGLSPSDNTIYSGIAAVIVVNVVLASYIYVAY   66 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999999999999999999999999999999999999999997

This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.

>KOG4783 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=5.4e-18  Score=118.95  Aligned_cols=68  Identities=25%  Similarity=0.483  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcCCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 034046            3 AVVKKFFIASMFMWMAPLAILYAFNHNLLPGSTNLTPYSATLLSGFLAVISVNIVIAFYIYMAMREPS   70 (105)
Q Consensus         3 ~Vi~KLl~fSiaM~~lPl~~fF~~~~~lf~g~~~ls~~~~t~ysgi~AVv~vNvVL~~YI~~A~~Ed~   70 (105)
                      +.++.|++||.+|+.+|+++||.++.++|+|+.+++..|..+||+|.||+.||++|++|||.||++.+
T Consensus        26 s~vktlLfy~~lii~vPiatfF~lK~fvleg~lgis~~da~iySaI~aVVavHvalglyiy~A~~~~s   93 (102)
T KOG4783|consen   26 SIVKTLLFYCSLIIGVPIATFFALKFFVLEGYLGISEVDADIYSAICAVVAVHVALGLYIYRAIYAKS   93 (102)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            56789999999999999999999999999999999999999999999999999999999999999954

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00