Citrus Sinensis ID: 034060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFINPTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA
Secondary Structure (PSIPRED)
ccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHcccccHHHHHccccccccccccccccccccccccccccccccccEHHEEEEEEEcc
Coil and Loop (DISEMBL)
medrkeknapwlsvpqfgdwdqkgqvpdysldFSKIREMRKQNkrdvsraslgneedfinptapsnnkahnnqddeqhhfhqshhhhspttrrSFLSYFNCCVKA
Flexible Loop (DISEMBL)
medrkeknapwlsvpqfgdwdqkgqvPDYSLDFSKIRemrkqnkrdvsraslgneedfinptAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA
Low Complexity Region (SEG)
MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFINPTAPSNNKAHNNQDDEqhhfhqshhhhsPTTRRSFLSYFNCCVKA
Disordered region (IsUnstruct)
***************QFGDW*************************************************************************************
Disordered Region (DISOPRED)
****************FGDWDQKGQVPDYSLDF************************************************************SFLSYFNCCVKA
Disordered Region (DISEMBL)
*********PWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFINPTAPSNNKAHNNQD*******************SFLSYFNCCVKA
Disordered Region (DISPRO)
**************P*FGDWDQKGQVPDYSLDFSKIREMRKQN************************************************RRSFLSYFNCCVKA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFINPTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
363807056	102	uncharacterized protein LOC100796591 [Gl	0.961	0.990	0.726	2e-36
225438551	98	PREDICTED: uncharacterized protein LOC10	0.933	1.0	0.752	2e-36
356525541	102	PREDICTED: uncharacterized protein LOC10	0.971	1.0	0.704	2e-36
224096318	107	predicted protein [Populus trichocarpa]	0.990	0.971	0.764	3e-36
351726984	102	uncharacterized protein LOC100306075 [Gl	0.971	1.0	0.685	4e-35
351722693	101	uncharacterized protein LOC100305497 [Gl	0.961	1.0	0.704	2e-33
18416133	112	uncharacterized protein [Arabidopsis tha	0.990	0.928	0.672	2e-33
388513069	102	unknown [Lotus japonicus]	0.971	1.0	0.647	6e-33
6469125	106	hypothetical protein [Cicer arietinum]	0.961	0.952	0.676	6e-33
21537281	112	unknown [Arabidopsis thaliana]	0.990	0.928	0.663	7e-33

>gi|363807056|ref|NP_001242583.1| uncharacterized protein LOC100796591 [Glycine max] gi|255647283|gb|ACU24108.1| unknown [Glycine max]

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 89/106 (83%), Gaps = 5/106 (4%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           ME  KEKNAPWLSVPQFGDWDQKGQV DYSLDFSKIREMRKQNK ++SRASLGNEE+ + 
Sbjct: 1   MEQSKEKNAPWLSVPQFGDWDQKGQVSDYSLDFSKIREMRKQNKTNISRASLGNEEELMA 60

Query: 61  PTAPSNNKAHNNQDDEQH-HFHQSHHHHSPTTRRSFLSYFNCCVKA 105
            +A +NN +  + DD QH H+HQ+   +SPTTRRSFLSYFNCC+KA
Sbjct: 61  SSA-TNNTSTVHSDDHQHPHYHQT---NSPTTRRSFLSYFNCCIKA 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438551|ref|XP_002279833.1| PREDICTED: uncharacterized protein LOC100245593 [Vitis vinifera] gi|296082508|emb|CBI21513.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 83/105 (79%), Gaps = 7/105 (6%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           MEDRKEK APWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEE+ + 
Sbjct: 1   MEDRKEKAAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEELV- 59

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
             AP    A   Q D  HH+HQS   HSPT RRS L  F+CCVKA
Sbjct: 60  --APPTTNADTRQTD-HHHYHQS---HSPTGRRSILGCFSCCVKA 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525541|ref|XP_003531383.1| PREDICTED: uncharacterized protein LOC100785896 isoform 1 [Glycine max]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 87/105 (82%), Gaps = 3/105 (2%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           M+ RKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIRE RKQNK ++SRASLGNEE+F++
Sbjct: 1   MDRRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKTNISRASLGNEEEFMD 60

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
            T  S+    ++ +  Q H+HQ+   HSPT R+SFLSYFNCCVKA
Sbjct: 61  STTSSSVNTAHSSEHPQPHYHQT---HSPTARKSFLSYFNCCVKA 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096318|ref|XP_002310603.1| predicted protein [Populus trichocarpa] gi|222853506|gb|EEE91053.1| predicted protein [Populus trichocarpa]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/106 (76%), Positives = 89/106 (83%), Gaps = 2/106 (1%)

Query: 1   MEDRK-EKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFI 59
           MEDRK +KNAPWLSVPQFGDWDQKG++PDYSLDFSKIREMRKQNK+DVSRASLGNEE+ I
Sbjct: 1   MEDRKDQKNAPWLSVPQFGDWDQKGELPDYSLDFSKIREMRKQNKKDVSRASLGNEEELI 60

Query: 60  NPTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
           NPTA +   A   QD  +HH +   HHHSPTTRRS  SYFNCCVKA
Sbjct: 61  NPTATAAKPAQ-TQDHHRHHHYHEGHHHSPTTRRSIFSYFNCCVKA 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726984|ref|NP_001237145.1| uncharacterized protein LOC100306075 [Glycine max] gi|255627455|gb|ACU14072.1| unknown [Glycine max]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 86/105 (81%), Gaps = 3/105 (2%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           M+ RKEKN PWLSVPQFGDWDQKGQVPDYSLDFSKIRE RKQNK ++SRASLGNEE+F++
Sbjct: 1   MDRRKEKNGPWLSVPQFGDWDQKGQVPDYSLDFSKIRETRKQNKTNISRASLGNEEEFMD 60

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
            T  S+    ++ +  Q H+HQ+   +SPT R+SFLSYFNCCVKA
Sbjct: 61  STTSSSVNTGHSSEHPQPHYHQT---NSPTARKSFLSYFNCCVKA 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722693|ref|NP_001236229.1| uncharacterized protein LOC100305497 [Glycine max] gi|255625701|gb|ACU13195.1| unknown [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 82/105 (78%), Gaps = 4/105 (3%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           ME  KEKNAPWLSVPQFGDWDQK QVPDYSLDFSKIRE RKQNK ++SRASLGNEE+   
Sbjct: 1   MEQNKEKNAPWLSVPQFGDWDQKEQVPDYSLDFSKIRETRKQNKTNISRASLGNEEEL-- 58

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
            TA + N A+    DE  H H  +  +SPT+RRSFLSYFNCCVKA
Sbjct: 59  -TASATNNANTVHSDEHQHPHY-NQTNSPTSRRSFLSYFNCCVKA 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416133|ref|NP_568222.1| uncharacterized protein [Arabidopsis thaliana] gi|51971651|dbj|BAD44490.1| unknown protein [Arabidopsis thaliana] gi|88011009|gb|ABD38888.1| At5g09960 [Arabidopsis thaliana] gi|332004088|gb|AED91471.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 74/110 (67%), Positives = 83/110 (75%), Gaps = 6/110 (5%)

Query: 2   EDRKEKNAPWLSVPQFGDWDQKG--QVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFI 59
           +DRKEKN PWLSVPQFGDWDQKG   +PDYS+DF+KIREMRKQNKRD SRASLGNEE+ I
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 60  NP--TAPSNNKAHNNQDDEQHHFHQSHHH--HSPTTRRSFLSYFNCCVKA 105
            P  +A S  +    Q + Q  F  SHHH  HSP+TRRS  S FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513069|gb|AFK44596.1| unknown [Lotus japonicus]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 82/105 (78%), Gaps = 3/105 (2%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           M+  KEKNAPWLSVPQFGDWDQKG +PDYS+DFSKIREMRKQNK ++SRASLGNEE+   
Sbjct: 1   MDQSKEKNAPWLSVPQFGDWDQKGPLPDYSMDFSKIREMRKQNKTNISRASLGNEEELTA 60

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
            T  S+    + +  +  ++HQ+   +SPTTRRSF SYFNCCVKA
Sbjct: 61  STTSSSINTGHTEPQQHSNYHQA---NSPTTRRSFFSYFNCCVKA 102

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6469125|emb|CAB61744.1| hypothetical protein [Cicer arietinum]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 86/105 (81%), Gaps = 4/105 (3%)

Query: 1   MEDRKEKNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
           M+  KEKNAPWLSVPQFG+WDQKG +PDYSLDFSKIREMRKQNK + SRASLGNEE+ +N
Sbjct: 6   MDQNKEKNAPWLSVPQFGEWDQKGPLPDYSLDFSKIREMRKQNKTNTSRASLGNEEE-LN 64

Query: 61  PTAPSNNKAHNNQDDEQHHFHQSHHHHSPTTRRSFLSYFNCCVKA 105
             +  NN + ++ + +  H+HQ+   +SPTTRRSFLSYFNCCVKA
Sbjct: 65  MASNKNNISTDHNERQHPHYHQT---NSPTTRRSFLSYFNCCVKA 106

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537281|gb|AAM61622.1| unknown [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 83/110 (75%), Gaps = 6/110 (5%)

Query: 2   EDRKEKNAPWLSVPQFGDWDQKG--QVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFI 59
           +DRKEKN PWLSVPQFGDWDQKG   +PDYS+DF+KIREMRKQNKRD SRASLGNEE+ I
Sbjct: 3   DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query: 60  NP--TAPSNNKAHNNQDDEQHHFHQSHHH--HSPTTRRSFLSYFNCCVKA 105
            P  +A S  +    Q + +  F  SHHH  HSP+TRRS  S FNCCVKA
Sbjct: 63  KPPESATSTAELTTVQSENRREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2178203	112	AT5G09960 "AT5G09960" [Arabido	0.990	0.928	0.581	5.6e-29
TAIR|locus:2177704	114	AT5G64850 "AT5G64850" [Arabido	1.0	0.921	0.578	2.8e-27
TAIR|locus:1009023455	99	AT5G19473 "AT5G19473" [Arabido	0.885	0.939	0.352	1.3e-13

TAIR|locus:2178203 AT5G09960 "AT5G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 64/110 (58%), Positives = 75/110 (68%)

Query:     2 EDRKEKNAPWLSVPQFGDWDQKG--QVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFI 59
             +DRKEKN PWLSVPQFGDWDQKG   +PDYS+DF+KIREMRKQNKRD SRASLGNEE+ I
Sbjct:     3 DDRKEKNTPWLSVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPSRASLGNEEELI 62

Query:    60 NPTAPSNNKAH----NNQDDEXXXXXXXXXXXXPTTRRSFLSYFNCCVKA 105
              P   + + A      +++              P+TRRS  S FNCCVKA
Sbjct:    63 KPPESATSTAELTTVQSENQREFSPSHHHQPHSPSTRRSMFSCFNCCVKA 112

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2177704 AT5G64850 "AT5G64850" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 66/114 (57%), Positives = 72/114 (63%)

Query:     1 MEDRKE-KNAPWLSVPQFGDWDQKGQVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFI 59
             MEDRKE KN+PWLSVPQFGDWDQKG   DYS+DFSKIREMRK NKRD SRASLGNEE+ I
Sbjct:     1 MEDRKENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKRDASRASLGNEEELI 60

Query:    60 NP--------TAPSNNKAHNNQDDEXXXXXXXXXXXXPTTRRSFLSYFNCCVKA 105
             NP        TA        + D+             P+ RR   S FNCCVKA
Sbjct:    61 NPFHDQPPVDTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVKA 114

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:1009023455 AT5G19473 "AT5G19473" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/105 (35%), Positives = 58/105 (55%)

Query:     3 DRKEKNAPWLSVPQFGDWDQKG--QVPDYSLDFSKIREMRKQNKRDVSRASLGNEEDFIN 60
             D++ +NA W  VPQFG WDQKG     +YS+ FSK R  RKQNK  V  +SLG+E++ + 
Sbjct:     2 DKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGVRHSSLGSEQELMV 61

Query:    61 PTAPSNNKAHNNQDDEXXXXXXXXXXXXPTTRRS-FLSYFNCCVK 104
                 ++ + H+  + +            P  ++   L+Y NCC++
Sbjct:    62 SVRRNHQQLHHRHETQDDD---------PVMKKKRILTYINCCIR 97


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.129   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      105        93   0.00091  102 3  11 23  0.41    30
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.24u 0.14s 12.38t   Elapsed:  00:00:00
  Total cpu time:  12.24u 0.14s 12.38t   Elapsed:  00:00:00
  Start:  Fri May 10 13:27:42 2013   End:  Fri May 10 13:27:42 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VII0229 hypothetical protein (107 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
PF05627	39	AvrRpt-cleavage: Cleavage site for pathogenic type	99.59

>PF05627 AvrRpt-cleavage: Cleavage site for pathogenic type III effector avirulence factor Avr; InterPro: IPR008700 This domain is conserved in small families of otherwise unrelated proteins in both mono-cots and di-cots, suggesting that it has a conserved, plant-specific function

Probab=99.59  E-value=1.2e-16  Score=97.72  Aligned_cols=33  Identities=36%  Similarity=0.740  Sum_probs=12.5

Q ss_pred             CCCCCCCCCccCCCC--CCCchhhhHHHHHHHhhh
Q 034060           11 WLSVPQFGDWDQKGQ--VPDYSLDFSKIREMRKQN   43 (105)
Q Consensus        11 ~~~vPkFG~WD~k~~--~~~ys~~FsK~Re~kK~~   43 (105)
                      +.+||+||+||++++  +++|||||+|||++||+.
T Consensus         5 ~~~vPkFG~WD~~~~~~~~~yT~iF~kar~~Kk~~   39 (39)
T PF05627_consen    5 GSHVPKFGEWDENNPASAEGYTVIFEKAREEKKTG   39 (39)
T ss_dssp             -------SGGGTT-TT---SS-EEEE---------
T ss_pred             CCCCCCCCcccCCCCCCCCCeeehHHHHhhhccCC
Confidence            578999999999965  789999999999999973

It is found both in the plant RIN4 (resistance R membrane-bound host-target protein) where it appears to contribute to the binding of the protein to both RCS (AvrRpt2 auto-cleavage site) and AvrB, the virulence factor from the infecting bacterium []. The cleavage site for the AvrRpt2 avirulence protein would appear to be the sequence motifs VPQFGDW and LPKFGEW, both of which are highly conserved within the domain []. ; PDB: 2NUD_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2nud_C	35	RIN4, RPM1-interacting protein 4; AVRB RIN4 high-a	99.61

>2nud_C RIN4, RPM1-interacting protein 4; AVRB RIN4 high-affinity toxin/protein binding complex; 2.30A {Pseudomonas syringae PV}

Probab=99.61  E-value=2.5e-17  Score=97.94  Aligned_cols=30  Identities=43%  Similarity=0.842  Sum_probs=19.4

Q ss_pred             CCCCCCCCCccCCCC--CCCchhhhHHHHHHH
Q 034060           11 WLSVPQFGDWDQKGQ--VPDYSLDFSKIREMR   40 (105)
Q Consensus        11 ~~~vPkFG~WD~k~~--~~~ys~~FsK~Re~k   40 (105)
                      .++|||||+||++++  +++|||||+||||+|
T Consensus         4 ~~~vPkFG~WD~~n~~s~~~yT~iF~k~re~K   35 (35)
T 2nud_C            4 VTVVPKFGDWDENNPSSADGYTHIFNKVREER   35 (35)
T ss_dssp             -----CCSGGGTTCTTCCCSSCEEEECC----
T ss_pred             CCCCCCCCcccCCCCCCCCCEeehhhhhhhcC
Confidence            679999999999865  689999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00