Citrus Sinensis ID: 034078

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAISSSKAFIASVLLSLILVLHLVAADqmvntnegassyptptidcgaackarcqlssrpnlchracgtccarckcvppgtsghlevcpcyatmtthhgrrkcp
Flexible Loop (DISEMBL)
MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYAtmtthhgrrkcp
Low Complexity Region (SEG)
MAISSSKAFiasvllslilvlhlvaaDQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP
Disordered region (IsUnstruct)
*******AFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTT********
Disordered Region (DISOPRED)
*****SKAFIASVLLSLILVLHLV*********************CGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHH******
Disordered Region (DISEMBL)
MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATM**********
Disordered Region (DISPRO)
MAISSSKAFIASVLLSLILVLHLVAADQ***********PTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTT******C*
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q93X17	104	Snakin-2 OS=Solanum tuber	N/A	no	1.0	1.0	0.538	5e-25
F4IQJ4	94	Gibberellin-regulated pro	yes	no	0.721	0.797	0.634	2e-22
P46689	98	Gibberellin-regulated pro	no	no	0.711	0.755	0.626	7e-21
P46687	99	Gibberellin-regulated pro	no	no	0.769	0.808	0.546	8e-18
Q8GWK5	119	Gibberellin-regulated pro	no	no	0.923	0.806	0.415	3e-17
P46688	99	Gibberellin-regulated pro	no	no	0.75	0.787	0.571	2e-12
Q9LFR3	275	Gibberellin-regulated pro	no	no	0.586	0.221	0.596	2e-12
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.923	0.950	0.367	1e-09
O80641	87	Gibberellin-regulated pro	no	no	0.836	1.0	0.333	3e-09
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.884	0.958	0.381	4e-09

>sp|Q93X17|SNAK2_SOLTU Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 71/104 (68%)

Query: 1   MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRP 60
           MAIS +      + L L+  +  +  DQ+ +     ++Y    IDCG AC ARC+LSSRP
Sbjct: 1   MAISKALFASLLLSLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRP 60

Query: 61  NLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
            LC+RACGTCCARC CVPPGTSG+ E CPCYA++TTH  +RKCP
Sbjct: 61  RLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.
Solanum tuberosum (taxid: 4113)

>sp|F4IQJ4|GASAB_ARATH Gibberellin-regulated protein 11 OS=Arabidopsis thaliana GN=GASA11 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 60/82 (73%), Gaps = 7/82 (8%)

Query: 23  LVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTS 82
            V AD MV +N+       P IDC + C+ RC LSSRPNLCHRACGTCCARC CV PGTS
Sbjct: 20  FVHAD-MVTSNDA------PKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTS 72

Query: 83  GHLEVCPCYATMTTHHGRRKCP 104
           G+ + CPCY ++TTH GRRKCP
Sbjct: 73  GNYDKCPCYGSLTTHGGRRKCP 94

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46689|GASA1_ARATH Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 30  VNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCP 89
           V  ++  + Y    IDCG+AC ARC+LS RP LCHRACGTCC RC CVPPGT G+ + C 
Sbjct: 25  VENSQKKNGY-AKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQ 83

Query: 90  CYATMTTHHGRRKCP 104
           CYA++TTH GRRKCP
Sbjct: 84  CYASLTTHGGRRKCP 98

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 19  LVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVP 78
             LH+ AA+      EG        IDCG  CK RC  SSRPNLC RAC +CC RC CVP
Sbjct: 20  FELHVHAAEDS-QVGEGVVK-----IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVP 73

Query: 79  PGTSGHLEVCPCYATMTTHHGRRKCP 104
           PGT+G+  +CPCYA++TT  GR KCP
Sbjct: 74  PGTAGNHHLCPCYASITTRGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWK5|GASA9_ARATH Gibberellin-regulated protein 9 OS=Arabidopsis thaliana GN=GASA9 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 69/113 (61%), Gaps = 17/113 (15%)

Query: 8   AFIASVLLSLILVLHLVAA------------DQMVNTNEGASSYPT----PTIDCGAACK 51
           AF+ ++++S +L+  ++A              Q  + N+ A+   T    P I+CG AC 
Sbjct: 8   AFV-TLIISFLLLSQVLAELSSSSNNETSSVSQTNDENQTAAFKRTYHHRPRINCGHACA 66

Query: 52  ARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
            RC  +SR  +CHRACG+CCA+C+CVPPGTSG+   CPCYA++ TH  + KCP
Sbjct: 67  RRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P46688|GASA2_ARATH Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 55/84 (65%), Gaps = 6/84 (7%)

Query: 21  LHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPG 80
           LH+ AAD      EG        IDCG  CK RC  SSR  LC RAC +CC+RC CVPPG
Sbjct: 22  LHVHAADG-AKVGEGVVK-----IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPG 75

Query: 81  TSGHLEVCPCYATMTTHHGRRKCP 104
           TSG+  +CPCYA++TTH GR KCP
Sbjct: 76  TSGNTHLCPCYASITTHGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFR3|GASAE_ARATH Gibberellin-regulated protein 14 OS=Arabidopsis thaliana GN=GASA14 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 44  IDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVC-PCYATMTTHHGRRK 102
           IDC   C  RC   SR N+C RAC TCC RCKCVPPGT G+ E C  CYA M T  G+ K
Sbjct: 214 IDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTRGGKSK 273

Query: 103 CP 104
           CP
Sbjct: 274 CP 275

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 43/98 (43%), Gaps = 2/98 (2%)

Query: 9   FIASVLLSLILVLH--LVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRA 66
            I S LL  IL     L  + +     E        +  CG  C  RC  +     C   
Sbjct: 4   LITSFLLLTILFTFVCLTMSKEAEYHPESYGPGSLKSYQCGGQCTRRCSNTKYHKPCMFF 63

Query: 67  CGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           C  CCA+C CVPPGT G+ +VCPCY    T  G  KCP
Sbjct: 64  CQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 15  LSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARC 74
           + L++V   + +  + ++    SS  +    CG  C  RC  + +   C + C  CC +C
Sbjct: 1   MKLVVVQFFIISLLLTSSFSVLSSADS---SCGGKCNVRCSKAGQHEECLKYCNICCQKC 57

Query: 75  KCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
            CVP GT GH + CPCY  M    G  KCP
Sbjct: 58  NCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 8   AFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRAC 67
            + AS LL + + L L+    +V   EG +    PT DC   C  RC  +S    C   C
Sbjct: 5   GYNASFLLLISMFLILLTFSNVV---EGYNKL-RPT-DCKPRCTYRCSATSHKKPCMFFC 59

Query: 68  GTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
             CCA C CVP G  G+ + CPCY    T  G+ KCP
Sbjct: 60  QKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
257815602	103	gast1-like protein [Jatropha curcas]	0.980	0.990	0.640	2e-31
255710053	103	cold-regulated LTCOR12 [Jatropha curcas]	0.980	0.990	0.650	4e-29
224085870	102	predicted protein [Populus trichocarpa]	0.913	0.931	0.659	2e-28
224062003	95	predicted protein [Populus trichocarpa]	0.913	1.0	0.644	6e-28
449437204	102	PREDICTED: snakin-2-like [Cucumis sativu	0.923	0.941	0.670	1e-27
224085874	103	predicted protein [Populus trichocarpa]	0.971	0.980	0.650	3e-27
209967463	102	GAST-like protein [Populus euphratica]	0.923	0.941	0.627	2e-26
224085866	98	predicted protein [Populus trichocarpa]	0.884	0.938	0.621	6e-26
224062007	101	predicted protein [Populus trichocarpa]	0.759	0.782	0.721	1e-25
224062005	102	predicted protein [Populus trichocarpa]	0.913	0.931	0.670	6e-25

>gi|257815602|gb|ACV70139.1| gast1-like protein [Jatropha curcas]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 81/103 (78%), Gaps = 1/103 (0%)

Query: 3   ISSSKAFIASVLLSLILVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPN 61
           ++ SK  IAS+++SL+ +LH   AD Q V +   A++ P   IDCG+AC ARCQLSSRPN
Sbjct: 1   MAFSKLLIASLVISLLFLLHFAEADHQTVKSKLDATNSPAEEIDCGSACTARCQLSSRPN 60

Query: 62  LCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           LC RACGTCCARCKCVPPGT+G+ E CPCYA++TTH GRRKCP
Sbjct: 61  LCERACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255710053|gb|ACU30848.1| cold-regulated LTCOR12 [Jatropha curcas]

 Score =  131 bits (330), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 82/103 (79%), Gaps = 1/103 (0%)

Query: 3   ISSSKAFIASVLLSLILVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPN 61
           ++ SK  IAS+++SL+L+LH   AD Q V +   A++ P   IDCG+AC ARCQLSSRPN
Sbjct: 1   MAFSKLLIASLVISLLLLLHFAEADHQTVKSKLDATNSPAEEIDCGSACTARCQLSSRPN 60

Query: 62  LCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           LC RACGTCCARCKCVPPGT+G+ E CPCYA++TTH GRRKCP
Sbjct: 61  LCKRACGTCCARCKCVPPGTAGNYEACPCYASLTTHGGRRKCP 103

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085870|ref|XP_002307720.1| predicted protein [Populus trichocarpa] gi|222857169|gb|EEE94716.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 77/97 (79%), Gaps = 2/97 (2%)

Query: 9   FIASVLLSLILVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRAC 67
           F+ ++L   +LVLHL  AD   VN+N  ASS PT  IDCG+AC+ARCQLSSRP LC RAC
Sbjct: 7   FLIALLFFSLLVLHLAEADHDTVNSNLAASSPPT-KIDCGSACEARCQLSSRPRLCKRAC 65

Query: 68  GTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           GTCC+RC CVPPGT+G+ + CPCYA++TTH GRRKCP
Sbjct: 66  GTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062003|ref|XP_002300706.1| predicted protein [Populus trichocarpa] gi|222842432|gb|EEE79979.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 78/104 (75%), Gaps = 9/104 (8%)

Query: 1   MAISSSKAFIASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRP 60
           MAIS  K  IAS+++SL+++       Q VN +  A S P   IDCG ACK RC LSSRP
Sbjct: 1   MAIS--KLLIASLVVSLLVL-------QQVNASPAAGSIPGKNIDCGGACKDRCSLSSRP 51

Query: 61  NLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           +LC+RACGTCCARCKCVP GTSG+L+ CPCYATMTTH GRRKCP
Sbjct: 52  HLCNRACGTCCARCKCVPKGTSGNLDTCPCYATMTTHGGRRKCP 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437204|ref|XP_004136382.1| PREDICTED: snakin-2-like [Cucumis sativus] gi|449505754|ref|XP_004162560.1| PREDICTED: snakin-2-like [Cucumis sativus]

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 9   FIASVLLSLILVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRAC 67
            I  +L S +LVL  V AD QMV     +S   T  IDCG AC +RC+LSSRPNLCHRAC
Sbjct: 6   IIVCLLASSLLVLCFVEADDQMVVGVAASSPTKTQNIDCGGACASRCKLSSRPNLCHRAC 65

Query: 68  GTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           GTCCARC CVPPGTSG+ E CPCYAT+TTH GRRKCP
Sbjct: 66  GTCCARCSCVPPGTSGNYEACPCYATLTTHGGRRKCP 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085874|ref|XP_002307722.1| predicted protein [Populus trichocarpa] gi|222857171|gb|EEE94718.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 77/106 (72%), Gaps = 5/106 (4%)

Query: 1   MAISSSKAFIASVLLSLILVLHLVAADQ-MVNTNEGASSYP-TPTIDCGAACKARCQLSS 58
           MAIS     +   L++ +LVL LV ADQ +VN+N  A+SYP    IDCG AC ARC LSS
Sbjct: 1   MAISK---LLIVFLVASLLVLRLVEADQKVVNSNIQAASYPPGKNIDCGGACNARCSLSS 57

Query: 59  RPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           RP LC RACGTCCARCKCVPPGTSG+   CPCYATMTT  GR KCP
Sbjct: 58  RPRLCKRACGTCCARCKCVPPGTSGNHYTCPCYATMTTRGGRLKCP 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209967463|gb|ACJ02356.1| GAST-like protein [Populus euphratica]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 78/102 (76%), Gaps = 6/102 (5%)

Query: 8   AFIASVLLSLI----LVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNL 62
           A I  +L++L+    LVL L  AD   V++N  ASS PT  IDCG+AC+ARCQLSSRP L
Sbjct: 2   AMITKLLIALLCFSLLVLQLAEADHDTVSSNLAASSPPT-KIDCGSACEARCQLSSRPRL 60

Query: 63  CHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           C RACGTCC+RC CVPPGT+G+ + CPCYA++TTH GRRKCP
Sbjct: 61  CKRACGTCCSRCSCVPPGTAGNYDACPCYASLTTHGGRRKCP 102

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085866|ref|XP_002307719.1| predicted protein [Populus trichocarpa] gi|222857168|gb|EEE94715.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 3/95 (3%)

Query: 10  IASVLLSLILVLHLVAADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGT 69
           +A+VLL + +V  L  +D ++ +     S P P IDC +AC  RCQLSSRPNLCHRACGT
Sbjct: 7   LAAVLL-VGIVFSLAVSDMVIKSL--VESDPAPQIDCASACAVRCQLSSRPNLCHRACGT 63

Query: 70  CCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           CCARC CVPPGTSG+ +VCPCY  MTTHHG+ KCP
Sbjct: 64  CCARCNCVPPGTSGNYDVCPCYGNMTTHHGQHKCP 98

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062007|ref|XP_002300708.1| predicted protein [Populus trichocarpa] gi|222842434|gb|EEE79981.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 63/79 (79%)

Query: 26  ADQMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHL 85
           ADQ VN+N+ AS  P   IDCG AC ARC LSSRP LC RACG+CCARCKCVP GTSG+L
Sbjct: 23  ADQKVNSNQAASHVPGNNIDCGGACHARCSLSSRPRLCKRACGSCCARCKCVPQGTSGNL 82

Query: 86  EVCPCYATMTTHHGRRKCP 104
           + CPCYAT+TT  GRRKCP
Sbjct: 83  DTCPCYATLTTRGGRRKCP 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062005|ref|XP_002300707.1| predicted protein [Populus trichocarpa] gi|222842433|gb|EEE79980.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 75/97 (77%), Gaps = 2/97 (2%)

Query: 9   FIASVLLSLILVLHLVAAD-QMVNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRAC 67
           F+ + LL  +LVLH   AD   VN+N  ASS P   IDCG+ACKARCQLSSRP LC RAC
Sbjct: 7   FLIASLLLSLLVLHFAEADHDPVNSNLAASS-PPKKIDCGSACKARCQLSSRPRLCKRAC 65

Query: 68  GTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           GTCC+RC CVPPGT+G+ E CPCYA++TTH GRRKCP
Sbjct: 66  GTCCSRCSCVPPGTAGNYEACPCYASLTTHGGRRKCP 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2062175	94	AT2G18420 "AT2G18420" [Arabido	0.653	0.723	0.691	5.2e-26
TAIR|locus:2005634	98	GASA1 "AT1G75750" [Arabidopsis	0.711	0.755	0.626	9.7e-25
TAIR|locus:2136892	99	GASA3 "AT4G09600" [Arabidopsis	0.586	0.616	0.672	7e-22
TAIR|locus:2136897	99	GASA2 "AT4G09610" [Arabidopsis	0.586	0.616	0.672	7e-22
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.605	0.529	0.603	4.9e-21
TAIR|locus:2147810	275	GASA14 "AT5G14920" [Arabidopsi	0.625	0.236	0.582	1.1e-16
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.701	0.688	0.44	3.4e-13
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.673	0.679	0.436	3.4e-13
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.567	0.678	0.440	7.1e-13
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.567	0.584	0.474	1.2e-12

TAIR|locus:2062175 AT2G18420 "AT2G18420" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 47/68 (69%), Positives = 54/68 (79%)

Query:    37 SSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTT 96
             +S   P IDC + C+ RC LSSRPNLCHRACGTCCARC CV PGTSG+ + CPCY ++TT
Sbjct:    27 TSNDAPKIDCNSRCQERCSLSSRPNLCHRACGTCCARCNCVAPGTSGNYDKCPCYGSLTT 86

Query:    97 HHGRRKCP 104
             H GRRKCP
Sbjct:    87 HGGRRKCP 94

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2005634 GASA1 "AT1G75750" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 47/75 (62%), Positives = 56/75 (74%)

Query:    30 VNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCP 89
             V  ++  + Y    IDCG+AC ARC+LS RP LCHRACGTCC RC CVPPGT G+ + C 
Sbjct:    25 VENSQKKNGY-AKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQ 83

Query:    90 CYATMTTHHGRRKCP 104
             CYA++TTH GRRKCP
Sbjct:    84 CYASLTTHGGRRKCP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IMP;IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2136892 GASA3 "AT4G09600" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 41/61 (67%), Positives = 47/61 (77%)

Query:    44 IDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKC 103
             IDCG  CK RC  SSRPNLC RAC +CC RC CVPPGT+G+  +CPCYA++TT  GR KC
Sbjct:    39 IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98

Query:   104 P 104
             P
Sbjct:    99 P 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS;TAS

TAIR|locus:2136897 GASA2 "AT4G09610" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 41/61 (67%), Positives = 47/61 (77%)

Query:    44 IDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKC 103
             IDCG  CK RC  SSR  LC RAC +CC+RC CVPPGTSG+  +CPCYA++TTH GR KC
Sbjct:    39 IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKC 98

Query:   104 P 104
             P
Sbjct:    99 P 99

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 38/63 (60%), Positives = 48/63 (76%)

Query:    42 PTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRR 101
             P I+CG AC  RC  +SR  +CHRACG+CCA+C+CVPPGTSG+   CPCYA++ TH  + 
Sbjct:    57 PRINCGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKL 116

Query:   102 KCP 104
             KCP
Sbjct:   117 KCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2147810 GASA14 "AT5G14920" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/67 (58%), Positives = 42/67 (62%)

Query:    40 PTPT-IDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVC-PCYATMTTH 97
             P  T IDC   C  RC   SR N+C RAC TCC RCKCVPPGT G+ E C  CYA M T 
Sbjct:   209 PVRTRIDCVPLCGTRCGQHSRKNVCMRACVTCCYRCKCVPPGTYGNKEKCGSCYANMKTR 268

Query:    98 HGRRKCP 104
              G+ KCP
Sbjct:   269 GGKSKCP 275

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/75 (44%), Positives = 39/75 (52%)

Query:    30 VNTNEGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCP 89
             ++ N G  S   P  +C  AC+ RC  +S    C   C  CC +C CVP GT GH E CP
Sbjct:    34 IHKNGGEGSLK-PE-ECPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECP 91

Query:    90 CYATMTTHHGRRKCP 104
             CY   TT  G  KCP
Sbjct:    92 CYNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 31/71 (43%), Positives = 38/71 (53%)

Query:    34 EGASSYPTPTIDCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYAT 93
             E  S+ P P ++CG  C  RC  +     C   C  CC +C CVPPGT G+ +VCPCY  
Sbjct:    34 ETKSAIP-PLLECGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVPPGTYGNKQVCPCYNN 92

Query:    94 MTTHHGRRKCP 104
               T  G  KCP
Sbjct:    93 WKTKSGGPKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query:    46 CGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
             CG  C  RC  + +   C + C  CC +C CVP GT GH + CPCY  M    G  KCP
Sbjct:    29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 28/59 (47%), Positives = 32/59 (54%)

Query:    46 CGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
             CG  C  RC  +     C   C  CCA+C CVPPGT G+ +VCPCY    T  G  KCP
Sbjct:    43 CGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQQGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4IQJ4	GASAB_ARATH	No assigned EC number	0.6341	0.7211	0.7978	yes	no
Q93X17	SNAK2_SOLTU	No assigned EC number	0.5384	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	5e-26

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 91.2 bits (227), Expect = 5e-26
 Identities = 35/60 (58%), Positives = 39/60 (65%)

Query: 45  DCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 104
           DCG  C  RC  +SR   C RACG CCA+C CVPPGT G+ + CPCY    TH GR KCP
Sbjct: 1   DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	93.6

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=1.3e-37  Score=203.42  Aligned_cols=60  Identities=65%  Similarity=1.459  Sum_probs=59.4

Q ss_pred             CchHHHhHHhhcCCCCchHHHHHhHhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034078           45 DCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP  104 (104)
Q Consensus        45 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~Gnk~~CpCY~~m~t~~g~~KCP  104 (104)
                      ||+++|++||++++++++|+|+||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=93.60  E-value=0.15  Score=35.51  Aligned_cols=25  Identities=32%  Similarity=0.351  Sum_probs=13.2

Q ss_pred             CcchhhHHHHH-HHHHHHHHHHHHHHhh
Q 034078            1 MAISSSKAFIA-SVLLSLILVLHLVAAD   27 (104)
Q Consensus         1 MA~~~sk~li~-~ll~sll~~l~lv~a~   27 (104)
                      ||.  -++|++ ++|++|||+.+.|.|.
T Consensus         1 MaS--K~~llL~l~LA~lLlisSevaa~   26 (95)
T PF07172_consen    1 MAS--KAFLLLGLLLAALLLISSEVAAR   26 (95)
T ss_pred             Cch--hHHHHHHHHHHHHHHHHhhhhhH
Confidence            773  333333 4455555466666663

Some of them may be involved in resistance to environmental stress [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00