Citrus Sinensis ID: 034109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MAALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MAALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLekesnkkpteiasvgllYPAECKALRAQFVNHCRASWVKHfdrlycknkrvtrllddggetrrgi
Flexible Loop (DISEMBL)
maaleayasrnadevhTDVLLKARQACYKSRDAFYDCLekesnkkpteiaSVGLLYPAECKALRAQFVNHCRASWVkhfdrlycknkrvtrllddggetrrgi
Low Complexity Region (SEG)
MAALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI
Disordered region (IsUnstruct)
**************VHTDVLLKARQACYKSRDAFYDCLEK*****PTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLL**********
Disordered Region (DISOPRED)
***********************RQACYKSRDAFYDCLEKESNKK****************ALRAQFVNHCRASWVKHFDRLYCKNKR***************
Disordered Region (DISEMBL)
***********ADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI
Disordered Region (DISPRO)
************DEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLD*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q2M2S5	79	Cytochrome c oxidase asse	yes	no	0.475	0.620	0.377	0.0001
Q5JTJ3	125	Cytochrome c oxidase asse	yes	no	0.475	0.392	0.344	0.0006

>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus GN=COA6 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 12/61 (19%)

Query: 21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
          +K RQAC+ +RD ++ CL++      TE AS       +CK LR+ F + C   W+K+FD
Sbjct: 6  MKERQACWGARDEYWKCLDEN-----TEDAS-------KCKKLRSSFESSCPQQWIKYFD 53

Query: 81 R 81
          +
Sbjct: 54 K 54

Bos taurus (taxid: 9913)

>sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens GN=COA6 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 21  LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
           +K RQ C+ +RD ++ CL++       E AS       +CK LR+ F + C   W+K+FD
Sbjct: 52  MKERQVCWGARDEYWKCLDEN-----LEDAS-------QCKKLRSSFESSCPQQWIKYFD 99

Query: 81  R 81
           +
Sbjct: 100 K 100

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
297793319	116	hypothetical protein ARALYDRAFT_495905 [	0.961	0.853	0.76	2e-37
22327930	116	Cytochrome c oxidase, subunit Vib family	0.961	0.853	0.75	4e-37
225445891	101	PREDICTED: uncharacterized protein LOC10	0.970	0.990	0.742	5e-37
255646188	101	unknown [Glycine max]	0.970	0.990	0.732	1e-36
356500645	101	PREDICTED: uncharacterized protein LOC10	0.970	0.990	0.732	1e-36
255564999	115	conserved hypothetical protein [Ricinus	0.961	0.860	0.73	7e-36
224091725	116	predicted protein [Populus trichocarpa]	0.961	0.853	0.69	1e-34
449457913	114	PREDICTED: uncharacterized protein LOC10	0.961	0.868	0.72	2e-34
224142405	116	predicted protein [Populus trichocarpa]	0.961	0.853	0.7	2e-34
449533631	114	PREDICTED: uncharacterized protein LOC10	0.961	0.868	0.72	3e-34

>gi|297793319|ref|XP_002864544.1| hypothetical protein ARALYDRAFT_495905 [Arabidopsis lyrata subsp. lyrata] gi|297310379|gb|EFH40803.1| hypothetical protein ARALYDRAFT_495905 [Arabidopsis lyrata subsp. lyrata]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           AL+ YAS N +EVH DVLLKAR ACYK+RDAFY CLEKES KKPTEIA+VGLLYP EC  
Sbjct: 2   ALDTYASSNPNEVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSN 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
            R QFVN+CR+SWVKHFDR YC+NKRV RLLDDG E R+G
Sbjct: 62  SRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDE-RKG 100

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327930|ref|NP_680453.1| Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana] gi|79331263|ref|NP_001032092.1| Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana] gi|19423921|gb|AAL87352.1| unknown protein [Arabidopsis thaliana] gi|21689763|gb|AAM67525.1| unknown protein [Arabidopsis thaliana] gi|26452952|dbj|BAC43552.1| unknown protein [Arabidopsis thaliana] gi|222423651|dbj|BAH19793.1| AT5G58005 [Arabidopsis thaliana] gi|332009602|gb|AED96985.1| Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana] gi|332009603|gb|AED96986.1| Cytochrome c oxidase, subunit Vib family protein [Arabidopsis thaliana]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           AL+ YAS N ++VH DVLLKAR ACYK+RDAFY CLEKES KKPTEIA+VGLLYP EC  
Sbjct: 2   ALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSN 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
            R QFVN+CR+SWVKHFDR YC+NKRV RLLDDG E R+G
Sbjct: 62  SRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDE-RKG 100

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445891|ref|XP_002279710.1| PREDICTED: uncharacterized protein LOC100255296 [Vitis vinifera] gi|297743631|emb|CBI36514.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (399), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 75/101 (74%), Positives = 84/101 (83%), Gaps = 1/101 (0%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           ALE YAS N + +HTDVL +ARQACYK+RDAFY CLEKESNKKPTEIASVGLLYP ECK 
Sbjct: 2   ALEKYASTNPNTIHTDVLSEARQACYKARDAFYACLEKESNKKPTEIASVGLLYPVECKE 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI 103
            RAQ+V+ CR +WVKHFDR YC  KRV RLLDD  E+RRG+
Sbjct: 62  SRAQYVSQCRPTWVKHFDRQYCSKKRVQRLLDD-NESRRGL 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255646188|gb|ACU23579.1| unknown [Glycine max]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           ALEAYA+ N D++HTDVL KAR +CYK+RDAFY CLEKES+KKPTEIASVGLLYP ECK 
Sbjct: 2   ALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECKE 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI 103
            R ++V  CR+SWVKHFDR YC+NKRV RLLDD G +RRG+
Sbjct: 62  CRNEYVKQCRSSWVKHFDRQYCQNKRVPRLLDDKG-SRRGV 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500645|ref|XP_003519142.1| PREDICTED: uncharacterized protein LOC100780570 [Glycine max]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/101 (73%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           ALEAYA+ N D++HTDVL KAR +CYK+RDAFY CLEKES+KKPTEIASVGLLYP ECK 
Sbjct: 2   ALEAYAAANPDKIHTDVLTKARDSCYKARDAFYACLEKESDKKPTEIASVGLLYPLECKE 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRGI 103
            R ++V  CR+SWVKHFDR YC+NKRV RLLDD G +RRG+
Sbjct: 62  CRNEYVKQCRSSWVKHFDRQYCQNKRVQRLLDDKG-SRRGV 101

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564999|ref|XP_002523492.1| conserved hypothetical protein [Ricinus communis] gi|223537199|gb|EEF38831.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 85/100 (85%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
            +EAYASRN D++HTDVL+KAR+ACYK+RDAFY CLEKES KKPTEI SVGLLYP ECK 
Sbjct: 2   TMEAYASRNPDKIHTDVLVKAREACYKARDAFYACLEKESGKKPTEIGSVGLLYPMECKN 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
            RA++   CRASWVKHFDRLY ++KRV RLLDD  ++RRG
Sbjct: 62  SRAKYEKGCRASWVKHFDRLYARDKRVQRLLDD-KDSRRG 100

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091725|ref|XP_002309335.1| predicted protein [Populus trichocarpa] gi|222855311|gb|EEE92858.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 82/100 (82%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           A+E YASRN D++HTDVL ++RQACYK+RDAF+ CLEKES+KKPTEI SVGL YPAECK 
Sbjct: 2   AMETYASRNVDKIHTDVLSQSRQACYKARDAFFACLEKESDKKPTEIGSVGLQYPAECKK 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
            R +F  +CR +WVKHFDRLYC+NK   RLL+D  E RRG
Sbjct: 62  SRVEFEKNCRPAWVKHFDRLYCRNKTAQRLLED-KEIRRG 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457913|ref|XP_004146692.1| PREDICTED: uncharacterized protein LOC101212489 [Cucumis sativus]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           A EA +S  +DEVHTDVL ++RQACYK+RDAFY C+EKES+KKPTEIASVGL+YPAECKA
Sbjct: 2   AFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECKA 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
           LRA +   CRASWVKHFDR +C+N RV RLLDD  + RRG
Sbjct: 62  LRADYAKLCRASWVKHFDRKFCQNSRVQRLLDD-KDLRRG 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142405|ref|XP_002324549.1| predicted protein [Populus trichocarpa] gi|222865983|gb|EEF03114.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 83/100 (83%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           A+E YASRN D++HTDVL ++RQACYK+RDAF+ CLEKES KKPTEI SVGL YPAECK 
Sbjct: 2   AMENYASRNIDKIHTDVLSQSRQACYKARDAFFACLEKESGKKPTEIGSVGLQYPAECKN 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
            RA+F  +CR +WVKHFDRL+C+NK   RLL+D  ETRRG
Sbjct: 62  SRAEFEKNCRPAWVKHFDRLHCRNKTSQRLLED-KETRRG 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533631|ref|XP_004173776.1| PREDICTED: uncharacterized protein LOC101228979 [Cucumis sativus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 3   ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
           A EA +S  +DEVHTDVL ++RQACYK+RDAFY C+EKES+KKPTEIASVGL+YPAECKA
Sbjct: 2   AFEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKA 61

Query: 63  LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
           LRA +   CRASWVKHFDR +C+N RV RLLDD  + RRG
Sbjct: 62  LRADYAKLCRASWVKHFDRKFCQNSRVQRLLDD-KDLRRG 100

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:504954864	116	AT5G58005 [Arabidopsis thalian	0.961	0.853	0.75	3e-37
FB|FBgn0259722	92	CG42376 [Drosophila melanogast	0.533	0.597	0.379	8.7e-08
UNIPROTKB|F1RGW3	131	C1orf31 "Uncharacterized prote	0.533	0.419	0.405	7.8e-07
UNIPROTKB|Q2M2S5	79	COA6 "Cytochrome c oxidase ass	0.533	0.696	0.391	3.4e-06
UNIPROTKB|E2R1L4	92	C1orf31 "Uncharacterized prote	0.533	0.597	0.376	1.5e-05
UNIPROTKB|Q5JTJ3	125	COA6 "Cytochrome c oxidase ass	0.533	0.44	0.362	3e-05
SGD|S000004857	104	COA6 "Protein involved in cyto	0.582	0.576	0.333	3.9e-05
MGI|MGI:1915142	79	Coa6 "cytochrome c oxidase ass	0.533	0.696	0.362	0.00013
CGD|CAL0000795	108	orf19.7603 [Candida albicans (	0.689	0.657	0.256	0.00017
UNIPROTKB|Q5ACN9	108	CaO19.7603 "Putative uncharact	0.689	0.657	0.256	0.00017

TAIR|locus:504954864 AT5G58005 [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 75/100 (75%), Positives = 84/100 (84%)

Query:     3 ALEAYASRNADEVHTDVLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKA 62
             AL+ YAS N ++VH DVLLKAR ACYK+RDAFY CLEKES KKPTEIA+VGLLYP EC  
Sbjct:     2 ALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECSN 61

Query:    63 LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGETRRG 102
              R QFVN+CR+SWVKHFDR YC+NKRV RLLDDG E R+G
Sbjct:    62 SRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDE-RKG 100

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=IEA

FB|FBgn0259722 CG42376 [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 22/58 (37%), Positives = 33/58 (56%)

Query:    24 RQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR 81
             R+ C+ +RD ++ CLE+ +   P   ++ G   P  C++LR  F   C   WVKHFDR
Sbjct:     9 RKKCWNNRDEYWKCLEEHA---PKHSSTSGEKVPTPCQSLRKSFEQSCPGQWVKHFDR 63

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|F1RGW3 C1orf31 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query:    21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
             +K RQAC+ +RDA++ CL++      TE AS       +CK LR+ F + C   W+K+FD
Sbjct:    58 MKERQACWGARDAYWKCLDEN-----TEDAS-------QCKKLRSSFESSCPQQWIKYFD 105

Query:    81 --RLYCKNK 87
               R Y K K
Sbjct:   106 KRRDYLKFK 114

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|Q2M2S5 COA6 "Cytochrome c oxidase assembly factor 6 homolog" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:    21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
             +K RQAC+ +RD ++ CL++      TE AS       +CK LR+ F + C   W+K+FD
Sbjct:     6 MKERQACWGARDEYWKCLDEN-----TEDAS-------KCKKLRSSFESSCPQQWIKYFD 53

Query:    81 --RLYCKNK 87
               R Y K K
Sbjct:    54 KRRDYLKFK 62

GO:0005739 "mitochondrion" evidence=ISS

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|E2R1L4 C1orf31 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:    21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
             +K RQAC+ +RD ++ CL++      TE AS        C+ LR+ F + C   W+K+FD
Sbjct:    19 MKERQACWGARDEYWRCLDEH-----TEDAS-------RCEKLRSSFESSCPQQWIKYFD 66

Query:    81 --RLYCKNK 87
               R Y K K
Sbjct:    67 KRRDYLKFK 75

GO:0005739 "mitochondrion" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|Q5JTJ3 COA6 "Cytochrome c oxidase assembly factor 6 homolog" [Homo sapiens (taxid:9606)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query:    21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
             +K RQ C+ +RD ++ CL++       E AS       +CK LR+ F + C   W+K+FD
Sbjct:    52 MKERQVCWGARDEYWKCLDEN-----LEDAS-------QCKKLRSSFESSCPQQWIKYFD 99

Query:    81 --RLYCKNK 87
               R Y K K
Sbjct:   100 KRRDYLKFK 108

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

SGD|S000004857 COA6 "Protein involved in cytochrome c oxidase assembly" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%)

Query:    24 RQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLY 83
             R+ C++SRDAF+ CL+K       +  +   +  + CK    +F  +C  SW+K+F    
Sbjct:    22 RKLCWESRDAFFQCLDKADILDAMDPKNSKSI-KSHCKVENEKFEENCAHSWIKYF---- 76

Query:    84 CKNKRV 89
              K KRV
Sbjct:    77 -KEKRV 81

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;IDA

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

MGI|MGI:1915142 Coa6 "cytochrome c oxidase assembly factor 6" [Mus musculus (taxid:10090)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 25/69 (36%), Positives = 36/69 (52%)

Query:    21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
             +K RQAC+ +RD ++ CL+  +     E A       A C+ LR+ F   C   W+K+FD
Sbjct:     6 MKERQACWGARDLYWRCLDDNA-----EDA-------ARCQKLRSSFEASCPQQWIKYFD 53

Query:    81 --RLYCKNK 87
               R Y K K
Sbjct:    54 KRRDYLKFK 62

GO:0003674 "molecular_function" evidence=ND

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

CGD|CAL0000795 orf19.7603 [Candida albicans (taxid:5476)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/82 (25%), Positives = 42/82 (51%)

Query:    24 RQACYKSRDAFYDCLEK---ESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHF- 79
             R  C++ RD F++CL K   +++    E+  V      +C   + +F  +C  SWVK+F 
Sbjct:    20 RVVCWEKRDGFFECLSKNYIDNSLDSKELDKVN----KQCGTEKKEFEQNCATSWVKYFQ 75

Query:    80 DRLY---CKNKRVTRLLDDGGE 98
             ++ Y    + + + +L  +G +
Sbjct:    76 EKRYNDLVRQRYIDKLESEGAQ 97

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ACN9 CaO19.7603 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
 Identities = 21/82 (25%), Positives = 42/82 (51%)

Query:    24 RQACYKSRDAFYDCLEK---ESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHF- 79
             R  C++ RD F++CL K   +++    E+  V      +C   + +F  +C  SWVK+F 
Sbjct:    20 RVVCWEKRDGFFECLSKNYIDNSLDSKELDKVN----KQCGTEKKEFEQNCATSWVKYFQ 75

Query:    80 DRLY---CKNKRVTRLLDDGGE 98
             ++ Y    + + + +L  +G +
Sbjct:    76 EKRYNDLVRQRYIDKLESEGAQ 97

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam02297	66	pfam02297, COX6B, Cytochrome oxidase c subunit VIb	2e-10

>gnl|CDD|216964 pfam02297, COX6B, Cytochrome oxidase c subunit VIb

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 12/65 (18%)

Query: 24 RQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLY 83
          R+ C+++RD F+ CL+K                 + CK  +  + + C ASWV++FD   
Sbjct: 9  RKHCWQARDDFFKCLDKNG------------EDNSPCKKFKKNYESLCPASWVEYFDEQR 56

Query: 84 CKNKR 88
             + 
Sbjct: 57 VDLRE 61

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF02297	76	COX6B: Cytochrome oxidase c subunit VIb; InterPro:	99.91
cd00926	75	Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb	99.76
KOG3057	112	consensus Cytochrome c oxidase, subunit VIb/COX12	99.05
KOG4618	74	consensus Uncharacterized conserved protein [Funct	85.0
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	82.06

>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1

Probab=99.91  E-value=1.4e-25  Score=147.97  Aligned_cols=72  Identities=26%  Similarity=0.573  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 034109           19 VLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLL   93 (103)
Q Consensus        19 ~~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~~kr~~~ll   93 (103)
                      +.+++|+.||.+||.||.|||.+++.++.   +.+....+.|+.+++.|+++||.|||+||++++.++++.+.||
T Consensus         4 P~~~~r~~Cw~arD~y~~Cl~~~~~~~~~---~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~~~~k~~~~   75 (76)
T PF02297_consen    4 PNRNQRKKCWQARDDYFKCLDKNGEPDSE---KEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVYDQRKEGTL   75 (76)
T ss_dssp             -SSB-HHHHHHHHHHHHHHHHHHHH---------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH-----HHHT--
T ss_pred             CChHHHHHHHHHHHHHHHHHHHcCccccc---cccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhhcc
Confidence            34889999999999999999999985443   2223356899999999999999999999999999999999886

9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....

>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb

Probab=99.76  E-value=1.4e-18  Score=115.54  Aligned_cols=54  Identities=15%  Similarity=0.513  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHH
Q 034109           20 LLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCK   85 (103)
Q Consensus        20 ~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~   85 (103)
                      .+.+|+.||.+||.||.||+++++.            .+.|+.++..|+++||.|||+||++++..
T Consensus        16 ~~nq~k~Cw~~y~~y~~Cl~~~ged------------~~~C~~~~~~~es~Cp~~Wve~w~ekR~~   69 (75)
T cd00926          16 NQNQTKHCWQRYVDYHRCIKAKGED------------ASPCKKFRRVYESLCPQEWLEKWDEQREE   69 (75)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCc------------hHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            4899999999999999999998743            26799999999999999999999977654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.

>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]

Probab=99.05  E-value=3e-10  Score=81.13  Aligned_cols=52  Identities=15%  Similarity=0.539  Sum_probs=45.9

Q ss_pred             HHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHH
Q 034109           21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYC   84 (103)
Q Consensus        21 r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~   84 (103)
                      -.+++.||.+++.|+.|++.++..            ...|+.+++.|++.||.+||++|++++.
T Consensus        52 ~nqtrhCf~~y~dyhrC~~~~geD------------~~~Ck~f~~~y~SlCP~~WV~kWdeqre  103 (112)
T KOG3057|consen   52 TNQTRHCFQRYVDYHRCIKAKGED------------ANPCKKFQKVYRSLCPGEWVEKWDEQRE  103 (112)
T ss_pred             cchhHHHHHHHHHHHHHHHHhccc------------chhHHHHHHHHHHhCcHHHHHHHHHhhh
Confidence            578999999999999999998733            2779999999999999999999996653

>KOG4618 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.00  E-value=1.9  Score=29.03  Aligned_cols=42  Identities=19%  Similarity=0.559  Sum_probs=34.6

Q ss_pred             HHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHH
Q 034109           25 QACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHF   79 (103)
Q Consensus        25 k~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF   79 (103)
                      .-|...=++=|.||++|+-.            .+.|..--..|. +|-..|-+-=
T Consensus        22 nPCl~es~aSfkCLeennyD------------RsKCq~yFd~Yk-eCKkfwn~ar   63 (74)
T KOG4618|consen   22 NPCLLESSASFKCLEENNYD------------RSKCQDYFDVYK-ECKKFWNEAR   63 (74)
T ss_pred             ChHHHHHHHHHHHHHhcCcc------------HHHHHHHHHHHH-HHHHHHHHHH
Confidence            36999999999999999743            378999999886 8999997643

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=82.06  E-value=1.2  Score=24.38  Aligned_cols=28  Identities=21%  Similarity=0.593  Sum_probs=21.0

Q ss_pred             hhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcH
Q 034109           32 DAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCR   72 (103)
Q Consensus        32 D~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~   72 (103)
                      .+|+.||+.|+..            ...|..+...|.+ |.
T Consensus         6 ~~~~~Cl~~n~~~------------~~~C~~~~~~~~~-C~   33 (35)
T PF06747_consen    6 KAYLACLKENNFD------------WSKCRKEFKAYKE-CR   33 (35)
T ss_dssp             HHHHHHHHCH-SS------------TCCCHHHHHHHHH-HH
T ss_pred             HHHHHHHHHCCCc------------HHhhHHHHHHHHH-Hh
Confidence            4799999999753            1679999999974 54

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1v54_H	85	AED, cytochrome C oxidase polypeptide VIB; oxidore	99.72
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	92.82

>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...

Probab=99.72  E-value=2.8e-18  Score=115.60  Aligned_cols=69  Identities=17%  Similarity=0.454  Sum_probs=54.1

Q ss_pred             hhhhhccCCCCCCchhhHHHHHHHHHcchhhHhh---hhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHH
Q 034109            4 LEAYASRNADEVHTDVLLKARQACYKSRDAFYDC---LEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD   80 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~r~~Rk~CW~aRD~yF~C---LD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~   80 (103)
                      +.+|.|.+.|..-|.  ..+|+.||.+||.||.|   ||+++..            .+.|+.++..|++.||.|||+||+
T Consensus         8 ~~~~~tap~D~rFPn--~nq~k~Cw~~y~df~~C~~~l~~~ged------------~~~C~~~~~~y~slCP~sWVe~wd   73 (85)
T 1v54_H            8 IKNYQTAPFDSRFPN--QNQTRNCWQNYLDFHRCEKAMTAKGGD------------VSVCEWYRRVYKSLCPISWVSTWD   73 (85)
T ss_dssp             CCCCCSCCCCTTSCS--SBCHHHHHHHHHHHHHHHHHHHHHTCC------------GGGGHHHHHHHHHHSCHHHHHHHH
T ss_pred             ccccccCCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHHhcCCc------------hHHHHHHHHHHHHcChHHHHHHHH
Confidence            345555555555443  79999999999999999   5556532            277999999999999999999999


Q ss_pred             HHHHHH
Q 034109           81 RLYCKN   86 (103)
Q Consensus        81 r~~~~~   86 (103)
                      +++...
T Consensus        74 eqR~~g   79 (85)
T 1v54_H           74 DRRAEG   79 (85)
T ss_dssp             HHHHHT
T ss_pred             HHHHhC
Confidence            776543

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=92.82  E-value=0.15  Score=34.17  Aligned_cols=42  Identities=21%  Similarity=0.546  Sum_probs=35.8

Q ss_pred             HHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHH
Q 034109           27 CYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR   81 (103)
Q Consensus        27 CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r   81 (103)
                      |+++.++=+.||++|+-.            ...|...-..|- +|-..|..--..
T Consensus        16 C~~e~~~S~kCL~~n~yD------------r~~C~~yF~~Yk-~CKk~W~~v~~e   57 (85)
T 2lqt_A           16 CLSESDASTRCLDENNYD------------RERCSTYFLRYK-NCRRFWNSIVMQ   57 (85)
T ss_dssp             CHHHHHHHHHHHHHTTTC------------TTTTHHHHHHHH-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCcc------------HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            999999999999999843            267999999997 999999875543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1v54h_	79	Cytochrome c oxidase subunit h {Cow (Bos taurus) [	96.76

>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c oxidase subunit h
superfamily: Cytochrome c oxidase subunit h
family: Cytochrome c oxidase subunit h
domain: Cytochrome c oxidase subunit h
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.76  E-value=0.00074  Score=43.32  Aligned_cols=66  Identities=18%  Similarity=0.452  Sum_probs=47.7

Q ss_pred             hhhhccCCCCCCchhhHHHHHHHHHcchhhHhh---hhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHH
Q 034109            5 EAYASRNADEVHTDVLLKARQACYKSRDAFYDC---LEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR   81 (103)
Q Consensus         5 ~~~~~~~~~~~~~~~~r~~Rk~CW~aRD~yF~C---LD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r   81 (103)
                      ++|.|-+-|.-=|.  -.+=+-||..==.|..|   |...+..            ...|...+..|.+.||.+||.=++.
T Consensus         3 ~~~~TaP~D~RFPn--~NQTrhC~~~Y~dyhrC~K~~~~kGed------------~~~C~~f~~~y~sLCP~~WiekWde   68 (79)
T d1v54h_           3 KNYQTAPFDSRFPN--QNQTRNCWQNYLDFHRCEKAMTAKGGD------------VSVCEWYRRVYKSLCPISWVSTWDD   68 (79)
T ss_dssp             CCCCSCCCCTTSCS--SBCHHHHHHHHHHHHHHHHHHHHHTCC------------GGGGHHHHHHHHHHSCHHHHHHHHH
T ss_pred             ccccCCCCCccCCc--chhhHHHHHHHHHHHHHHHHHHhcCCC------------chHHHHHHHHHHHhCCHHHHHHHHH
Confidence            45555444443333  24556899999999999   5444422            2679999999999999999999996


Q ss_pred             HHH
Q 034109           82 LYC   84 (103)
Q Consensus        82 ~~~   84 (103)
                      ++.
T Consensus        69 qr~   71 (79)
T d1v54h_          69 RRA   71 (79)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543