Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 103
PLN02388 177
PLN02388, PLN02388, phosphopantetheine adenylyltra
8e-54
cd02164 143
cd02164, PPAT_CoAS, phosphopantetheine adenylyltra
6e-30
COG1019 158
COG1019, COG1019, Predicted nucleotidyltransferase
7e-15
PRK00777 153
PRK00777, PRK00777, phosphopantetheine adenylyltra
4e-14
cd02039 143
cd02039, cytidylyltransferase_like, Cytidylyltrans
1e-08
pfam01467 148
pfam01467, CTP_transf_2, Cytidylyltransferase
1e-08
TIGR00125 66
TIGR00125, cyt_tran_rel, cytidyltransferase-like d
3e-08
PRK01170
322
PRK01170, PRK01170, phosphopantetheine adenylyltra
8e-06
COG0615 140
COG0615, TagD, Cytidylyltransferase [Cell envelope
7e-05
cd02170 136
cd02170, cytidylyltransferase, cytidylyltransferas
1e-04
>gnl|CDD|215218 PLN02388, PLN02388, phosphopantetheine adenylyltransferase
Back Hide alignment and domain information
Score = 165 bits (418), Expect = 8e-54
Identities = 66/84 (78%), Positives = 75/84 (89%)
Query: 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML 62
M + +SV +S +SP NSYGAVVLGGTFDRLHDGHRLFLKA+AELARDRIV+GVCDGPML
Sbjct: 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPML 60
Query: 63 TNKQFAELIQPVDERMRNVEAYIK 86
+ KQFAELIQP++ERM NVE YIK
Sbjct: 61 SKKQFAELIQPIEERMHNVEEYIK 84
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes
Back Show alignment and domain information
Score = 103 bits (259), Expect = 6e-30
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V +GGTFDRLHDGH++ L + LA +++++GV +L NK ELI+P +ER+ N+
Sbjct: 2 VAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHE 61
Query: 84 YIKVL 88
++ L
Sbjct: 62 FLVDL 66
The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD. Length = 143
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only]
Back Show alignment and domain information
Score = 65.4 bits (160), Expect = 7e-15
Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V +GGTFDRLHDGH+ L+ + E+ DR+ +G+ + K+ E I+P + R+RN+
Sbjct: 8 VAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKKK-KEKIEPYEVRLRNLRN 65
Query: 84 YIKVLG 89
+++ +
Sbjct: 66 FLESIK 71
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional
Back Show alignment and domain information
Score = 63.3 bits (155), Expect = 4e-14
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 12/75 (16%)
Query: 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAEL-----IQPVD 75
V +GGTFD LHDGHR L+ + EL R+ +G LT+ +FA+ ++P +
Sbjct: 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIG------LTSDEFAKSYKKHKVRPYE 53
Query: 76 ERMRNVEAYIKVLGK 90
R++N++ ++K +
Sbjct: 54 VRLKNLKKFLKAVEY 68
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like domain
Back Show alignment and domain information
Score = 49.0 bits (117), Expect = 1e-08
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
++ G F+ H GH +K + E A D +++ + P K+ + + ER+ ++
Sbjct: 2 GIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPK--KKRNKDPFSLHERVEMLKE 59
Query: 84 YIK 86
+K
Sbjct: 60 ILK 62
Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Length = 143
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase
Back Show alignment and domain information
Score = 48.6 bits (116), Expect = 1e-08
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ GGTFD +H GH L+ + EL D+IV D + + + +ER+ +E
Sbjct: 1 LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGVPSDES---PHKDTKNLFSAEERLEMLEL 57
Query: 84 YIKVLGK 90
++V
Sbjct: 58 ALEVDPN 64
This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase. Length = 148
>gnl|CDD|232837 TIGR00125, cyt_tran_rel, cytidyltransferase-like domain
Back Show alignment and domain information
Score = 46.1 bits (110), Expect = 3e-08
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V+ GTFD H GH L+ + EL D ++VGV N E + ++ER+ ++A
Sbjct: 2 VIFVGTFDPFHLGHLDLLERAKELF-DELIVGVG-SDQFVNPLKGEPVFSLEERLEMLKA 59
Query: 84 YIKVL 88
V
Sbjct: 60 LKYVD 64
Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Length = 66
>gnl|CDD|234912 PRK01170, PRK01170, phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Back Show alignment and domain information
Score = 42.5 bits (100), Expect = 8e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVC-DGPMLTNKQFAELIQPVDERMRNVE 82
V+GGTF +LH GH+ LK + E D +V+G+ D + NK + P ++R R +E
Sbjct: 3 TVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNKVYP---IPYEDRKRKLE 58
Query: 83 AYIK 86
+IK
Sbjct: 59 NFIK 62
>gnl|CDD|223688 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Back Show alignment and domain information
Score = 38.8 bits (91), Expect = 7e-05
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 12/65 (18%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG---------PMLTNKQFAEL---I 71
V GTFD LH GH FL+ + +L + IVV D P++ +Q AE+ +
Sbjct: 4 VWADGTFDILHPGHIEFLRQAKKLGDELIVVVARDETVIKRKKRKPIMPEEQRAEVLESL 63
Query: 72 QPVDE 76
+ VDE
Sbjct: 64 RYVDE 68
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase
Back Show alignment and domain information
Score = 38.4 bits (90), Expect = 1e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 13/65 (20%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG---------PMLTNKQFAEL---I 71
V GTFD +H GH FL+ + +L D ++VGV P+L +Q AE+ +
Sbjct: 4 VYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIKRRPILPEEQRAEVVEAL 62
Query: 72 QPVDE 76
+ VDE
Sbjct: 63 KYVDE 67
The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates. Length = 136
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
103
PLN02388 177
phosphopantetheine adenylyltransferase
99.83
cd02172 144
RfaE_N N-terminal domain of RfaE. RfaE is a protei
99.78
TIGR02199 144
rfaE_dom_II rfaE bifunctional protein, domain II.
99.78
cd02164 143
PPAT_CoAS phosphopantetheine adenylyltransferase d
99.75
KOG3351 293
consensus Predicted nucleotidyltransferase [Genera
99.74
cd02174 150
CCT CTP:phosphocholine cytidylyltransferase. CTP:p
99.74
cd02173 152
ECT CTP:phosphoethanolamine cytidylyltransferase (
99.74
COG0615 140
TagD Cytidylyltransferase [Cell envelope biogenesi
99.74
COG1019 158
Predicted nucleotidyltransferase [General function
99.73
cd02170 136
cytidylyltransferase cytidylyltransferase. The cyt
99.71
cd02171 129
G3P_Cytidylyltransferase glycerol-3-phosphate cyti
99.71
PRK00777 153
phosphopantetheine adenylyltransferase; Provisiona
99.7
PF06574 157
FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof
99.69
PTZ00308
353
ethanolamine-phosphate cytidylyltransferase; Provi
99.66
TIGR01518 125
g3p_cytidyltrns glycerol-3-phosphate cytidylyltran
99.66
cd02064 180
FAD_synthetase_N FAD synthetase, N-terminal domain
99.65
PTZ00308 353
ethanolamine-phosphate cytidylyltransferase; Provi
99.65
PLN02406
418
ethanolamine-phosphate cytidylyltransferase
99.61
PRK05627
305
bifunctional riboflavin kinase/FMN adenylyltransfe
99.6
PLN02406 418
ethanolamine-phosphate cytidylyltransferase
99.6
PRK01170
322
phosphopantetheine adenylyltransferase/unknown dom
99.6
COG0669 159
CoaD Phosphopantetheine adenylyltransferase [Coenz
99.59
PLN02413
294
choline-phosphate cytidylyltransferase
99.57
PRK11316 473
bifunctional heptose 7-phosphate kinase/heptose 1-
99.55
PRK13964 140
coaD phosphopantetheine adenylyltransferase; Provi
99.55
TIGR00125 66
cyt_tran_rel cytidyltransferase-related domain. Pr
99.55
TIGR00083
288
ribF riboflavin kinase/FMN adenylyltransferase. mu
99.54
PRK07143
279
hypothetical protein; Provisional
99.54
COG0196
304
RibF FAD synthase [Coenzyme metabolism]
99.53
cd02039 143
cytidylyltransferase_like Cytidylyltransferase-lik
99.5
PRK00168 159
coaD phosphopantetheine adenylyltransferase; Provi
99.5
TIGR01510 155
coaD_prev_kdtB pantetheine-phosphate adenylyltrans
99.41
COG2870 467
RfaE ADP-heptose synthase, bifunctional sugar kina
99.4
cd02167 158
NMNAT_NadR Nicotinamide/nicotinate mononucleotide
99.39
cd02163 153
PPAT Phosphopantetheine adenylyltransferase. Phosp
99.37
PF01467 157
CTP_transf_2: Cytidylyltransferase; InterPro: IPR0
99.37
cd02156 105
nt_trans nucleotidyl transferase superfamily. nt_t
99.34
PRK00071
203
nadD nicotinic acid mononucleotide adenylyltransfe
99.33
cd02166 163
NMNAT_Archaea Nicotinamide/nicotinate mononucleoti
99.31
TIGR01526
325
nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr
99.29
TIGR01527 165
arch_NMN_Atrans nicotinamide-nucleotide adenylyltr
99.28
COG1057
197
NadD Nicotinic acid mononucleotide adenylyltransfe
99.28
KOG2803
358
consensus Choline phosphate cytidylyltransferase/P
99.28
PRK08887 174
nicotinic acid mononucleotide adenylyltransferase;
99.26
PRK06973
243
nicotinic acid mononucleotide adenylyltransferase;
99.23
PRK08099
399
bifunctional DNA-binding transcriptional repressor
99.23
cd02168
181
NMNAT_Nudix Nicotinamide/nicotinate mononucleotide
99.23
cd02165
192
NMNAT Nicotinamide/nicotinate mononucleotide adeny
99.22
PRK01153 174
nicotinamide-nucleotide adenylyltransferase; Provi
99.19
KOG2803 358
consensus Choline phosphate cytidylyltransferase/P
99.19
TIGR00482
193
nicotinate (nicotinamide) nucleotide adenylyltrans
99.18
PRK07152
342
nadD putative nicotinate-nucleotide adenylyltransf
99.18
PRK05379
340
bifunctional nicotinamide mononucleotide adenylylt
99.15
cd02169
297
Citrate_lyase_ligase Citrate lyase ligase. Citrate
99.14
TIGR00124
332
cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP
99.11
PLN02945
236
nicotinamide-nucleotide adenylyltransferase/nicoti
98.96
cd09286
225
NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti
98.8
PRK13793
196
nicotinamide-nucleotide adenylyltransferase; Provi
98.77
KOG2804
348
consensus Phosphorylcholine transferase/cholinepho
98.76
COG1056 172
NadR Nicotinamide mononucleotide adenylyltransfera
98.7
smart00764
182
Citrate_ly_lig Citrate lyase ligase C-terminal dom
98.63
PRK13670
388
hypothetical protein; Provisional
98.41
PRK13671
298
hypothetical protein; Provisional
98.17
PF08218
182
Citrate_ly_lig: Citrate lyase ligase C-terminal do
97.76
TIGR00018
282
panC pantoate--beta-alanine ligase. This family is
97.5
PRK00380
281
panC pantoate--beta-alanine ligase; Reviewed
97.5
cd00560
277
PanC Pantoate-beta-alanine ligase. PanC Pantoate-b
97.47
TIGR00339
383
sopT ATP sulphurylase. Members of this family also
97.46
PLN02660
284
pantoate--beta-alanine ligase
97.44
COG3053
352
CitC Citrate lyase synthetase [Energy production a
96.96
PF05636
388
HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr
96.56
COG1323
358
Predicted nucleotidyltransferase [General function
95.61
PF01747
215
ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002
95.57
COG2046
397
MET3 ATP sulfurylase (sulfate adenylyltransferase)
94.9
PF02569
280
Pantoate_ligase: Pantoate-beta-alanine ligase; Int
94.18
cd00517
353
ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also
93.69
COG0414
285
PanC Panthothenate synthetase [Coenzyme metabolism
93.33
PRK05537
568
bifunctional sulfate adenylyltransferase subunit 1
92.81
PRK04149
391
sat sulfate adenylyltransferase; Reviewed
92.63
PRK13477
512
bifunctional pantoate ligase/cytidylate kinase; Pr
91.64
KOG3199
234
consensus Nicotinamide mononucleotide adenylyl tra
91.09
smart00764 182
Citrate_ly_lig Citrate lyase ligase C-terminal dom
87.36
>PLN02388 phosphopantetheine adenylyltransferase
Back Hide alignment and domain information
Probab=99.83 E-value=2.3e-20 Score=132.77 Aligned_cols=90 Identities=73% Similarity=1.182 Sum_probs=80.5
Q ss_pred cccccccccccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH
Q 034114 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~ 82 (103)
|....||++.++.++++.++.|+++||||++|.||+.||++|.+++.+.++|+++.++.+.++...+.+.|+++|.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred CcccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999996689999999988765555678999999999999
Q ss_pred HHHHhcCCCE
Q 034114 83 AYIKVLGKWM 92 (103)
Q Consensus 83 ~fi~~~~~~~ 92 (103)
+|+..+.|+.
T Consensus 81 ~fl~~~~p~~ 90 (177)
T PLN02388 81 EYIKSIKPEL 90 (177)
T ss_pred HHHHHcCCCc
Confidence 9999887753
>cd02172 RfaE_N N-terminal domain of RfaE
Back Show alignment and domain information
Probab=99.78 E-value=9.4e-19 Score=120.45 Aligned_cols=80 Identities=25% Similarity=0.203 Sum_probs=69.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHH-----------------HHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMR-----------------NVEA 83 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~-----------------~~~~ 83 (103)
.++|++.|+||++|.||+++|++|+++++ .++|++++++.+.+. +..++.|.++|.+ ++++
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~vv~~~~d~~~~~~-~~~~i~~~~eR~~~l~~lg~VD~vi~~~~~~~~~ 81 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGD-ILVVSLTSDRYVNKG-PGRPIFPEDLRAEVLAALGFVDYVVLFDNPTALE 81 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCC-eEEEEEeChHHhccC-CCCCCCCHHHHHHHHHccCCccEEEECCCCCHHH
Confidence 46899999999999999999999999994 889999998766433 2467899999974 3589
Q ss_pred HHHhcCCCEEEEeeCceee
Q 034114 84 YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f~ 102 (103)
|+++++++++|+|+||+|.
T Consensus 82 fi~~l~~~~vv~G~d~~fg 100 (144)
T cd02172 82 IIDALQPNIYVKGGDYENP 100 (144)
T ss_pred HHHHhCCCEEEECCCcccC
Confidence 9999999999999999983
RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II
Back Show alignment and domain information
Probab=99.78 E-value=9e-19 Score=120.49 Aligned_cols=81 Identities=28% Similarity=0.311 Sum_probs=68.2
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NVE 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~~ 82 (103)
.++|++.|+||++|.||+.+|++|++.|+ .++|++++|+... .+....++.+.++|.+ +++
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~~~ 89 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGD-RLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDTPE 89 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCC-ccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCCHH
Confidence 57899999999999999999999999984 7899999997432 1222246899999974 358
Q ss_pred HHHHhcCCCEEEEeeCceee
Q 034114 83 AYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 83 ~fi~~~~~~~~V~G~d~~f~ 102 (103)
+|++.++++++|+|+||+|+
T Consensus 90 ~fi~~l~~~~vv~G~d~~~~ 109 (144)
T TIGR02199 90 ELIGELKPDILVKGGDYKVE 109 (144)
T ss_pred HHHHHhCCCEEEECCCCCCC
Confidence 99999999999999999985
RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes
Back Show alignment and domain information
Probab=99.75 E-value=9.6e-18 Score=115.69 Aligned_cols=69 Identities=41% Similarity=0.763 Sum_probs=60.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW 91 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~ 91 (103)
+|++|||||++|.||+.++++|.+++.+.+++|+|+|+++++++..+.+.|+++|.+++++|++++.|+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~ 69 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPT 69 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999985689999999987766554567899999999999999988764
The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Back Show alignment and domain information
Probab=99.74 E-value=1.4e-18 Score=128.79 Aligned_cols=86 Identities=44% Similarity=0.748 Sum_probs=79.6
Q ss_pred ccccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC
Q 034114 10 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG 89 (103)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~ 89 (103)
.+.++.+|.+.+.+++.|||||.+|.||+-||..|++++.+.++|||+.++++++|...++++|+++|.+.+.+|++.++
T Consensus 131 ~e~e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IK 210 (293)
T KOG3351|consen 131 DESEKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIK 210 (293)
T ss_pred cccccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 45578888999999999999999999999999999999988999999999999888888999999999999999999999
Q ss_pred CCEEEE
Q 034114 90 KWMHVL 95 (103)
Q Consensus 90 ~~~~V~ 95 (103)
|+..+-
T Consensus 211 p~l~~~ 216 (293)
T KOG3351|consen 211 PDLNVR 216 (293)
T ss_pred CCceEE
Confidence 987653
>cd02174 CCT CTP:phosphocholine cytidylyltransferase
Back Show alignment and domain information
Probab=99.74 E-value=9.7e-18 Score=116.44 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=66.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------------ 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------------ 81 (103)
..+|++.|+||++|.||+.+|++|++++ ++.++|||++|+.+...+.. ++.++++|.+++
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~-pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP-PVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC-CcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 3579999999999999999999999998 13899999999766332223 899999998532
Q ss_pred HHHHHhcCCCEEEEeeCcee
Q 034114 82 EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++||++|.|.||..
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~ 100 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYL 100 (150)
T ss_pred HHHHHHhCCCEEEECCCCCC
Confidence 57888999999999999863
CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT)
Back Show alignment and domain information
Probab=99.74 E-value=9.4e-18 Score=116.69 Aligned_cols=80 Identities=28% Similarity=0.289 Sum_probs=68.0
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCc-ccccCCCCCHHHHHHH------------------H
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRN------------------V 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~-k~~~~~i~~f~~R~~~------------------~ 81 (103)
.++|++.|+||++|.||+.+|++|++++ +.++|||++|+.+.. |....++.|+++|.+. .
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~ 80 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVIT 80 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcch
Confidence 4689999999999999999999999998 599999999976533 3334689999999853 3
Q ss_pred HHHHHhcCCCEEEEeeCcee
Q 034114 82 EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++|+++|.|.|+..
T Consensus 81 ~~~~~~~~~d~vv~G~d~~~ 100 (152)
T cd02173 81 KELIEHFKIDVVVHGKTEET 100 (152)
T ss_pred HHHHHHhCCCEEEECCCCcc
Confidence 57899999999999999865
CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Back Show alignment and domain information
Probab=99.74 E-value=6.1e-18 Score=116.23 Aligned_cols=80 Identities=28% Similarity=0.331 Sum_probs=65.1
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH------------------HH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------------EA 83 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------------~~ 83 (103)
.+|++.||||.+|+||..+|++|+++| +.++|++..|+.....++..+++|.++|.+.+ .+
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~ 80 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE 80 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence 469999999999999999999999999 56667666665443322346899999998622 57
Q ss_pred HHHhcCCCEEEEeeCceee
Q 034114 84 YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f~ 102 (103)
++++++||++++|+|++|+
T Consensus 81 ~i~~~k~Div~lG~D~~~d 99 (140)
T COG0615 81 DIEEYKPDIVVLGDDQKFD 99 (140)
T ss_pred HHHHhCCCEEEECCCCcCC
Confidence 7889999999999999976
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Back Show alignment and domain information
Probab=99.73 E-value=7.8e-18 Score=116.81 Aligned_cols=73 Identities=33% Similarity=0.636 Sum_probs=65.9
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMH 93 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~ 93 (103)
.++.+|++|||||.+|.||+.||+.|.+.| +.+++|+|+|++++.+ +.+.+.||+.|.+++.+|+...+++..
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G-~~v~IGlTsDe~~k~~-k~~~i~p~~~R~~~l~~fl~~~~~~~~ 75 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKK-KKEKIEPYEVRLRNLRNFLESIKADYE 75 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC-CeEEEEEccHHHHHHh-ccccCCcHHHHHHHHHHHHHHhcCCcc
Confidence 567899999999999999999999999999 4899999999998765 457899999999999999998877765
>cd02170 cytidylyltransferase cytidylyltransferase
Back Show alignment and domain information
Probab=99.71 E-value=2.3e-17 Score=111.59 Aligned_cols=80 Identities=29% Similarity=0.365 Sum_probs=64.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------HHH--
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV--------------EAY-- 84 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~--------------~~f-- 84 (103)
+++++++|+||++|.||+.++++|.+.+ +.++|++++|+.+.+.+ ..++.++++|.+.+ ++|
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~-~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIK-RRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcC-CCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 5789999999999999999999999998 58999999996553222 24789999998633 223
Q ss_pred -HHhcCCCEEEEeeCceee
Q 034114 85 -IKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 85 -i~~~~~~~~V~G~d~~f~ 102 (103)
+.+++|+++|+|+||+|.
T Consensus 79 ~l~~~~~~~vv~G~d~~fg 97 (136)
T cd02170 79 PLEELKPDVIVLGDDQKNG 97 (136)
T ss_pred HHHHHCCCEEEECCCCCCC
Confidence 346789999999999883
The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.71 E-value=7.4e-17 Score=108.24 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=62.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------HHH-
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------EAY- 84 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~~f- 84 (103)
|+++++.|+||++|.||+.+|++|+++++ .+++++++|+..+.+. ..++.|+++|.+.+ ++|
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~l~v~v~~d~~~~~~~-~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGD-KLIVAVSTDEFNAGKG-KKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCC-EEEEEEeccHhHHhcC-CCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 57899999999999999999999999984 7999999986433222 35788999998632 233
Q ss_pred --HHhcCCCEEEEeeCce
Q 034114 85 --IKVLGKWMHVLFFGSY 100 (103)
Q Consensus 85 --i~~~~~~~~V~G~d~~ 100 (103)
+++++++++|+|+||.
T Consensus 79 ~~~~~l~~~~vv~G~d~~ 96 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWE 96 (129)
T ss_pred HHHHHhCCCEEEECCCCc
Confidence 3468999999999984
Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.70 E-value=8.1e-17 Score=112.08 Aligned_cols=66 Identities=32% Similarity=0.659 Sum_probs=57.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++|+++||||++|.||+.+|++|++++ +.++||+++|+.+++.++ +++.|+++|.++++.|++.+
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~~~ 66 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLKAV 66 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999998 589999999987744333 68899999999999888753
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2
Back Show alignment and domain information
Probab=99.69 E-value=7.7e-17 Score=112.56 Aligned_cols=83 Identities=27% Similarity=0.356 Sum_probs=58.2
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhc--CcEEEEEecCC----CCCcccccCCCCCHHHHHH-------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP----MLTNKQFAELIQPVDERMR------------- 79 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d~----~l~~k~~~~~i~~f~~R~~------------- 79 (103)
+..+.+++.|+||++|.||++|+++|.+.+. +...+++|+++ ++.+......+.+.++|.+
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~ 82 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVI 82 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4567899999999999999999999999983 47899999985 2332333455788888864
Q ss_pred ---------HHHHHHH-----hcCCCEEEEeeCcee
Q 034114 80 ---------NVEAYIK-----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 80 ---------~~~~fi~-----~~~~~~~V~G~d~~f 101 (103)
++++|++ ++++..+|+|+||+|
T Consensus 83 ~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrF 118 (157)
T PF06574_consen 83 PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRF 118 (157)
T ss_dssp -CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EE
T ss_pred cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccC
Confidence 4688887 467899999999998
7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.66 E-value=3e-16 Score=121.69 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=68.4
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHH------------------H
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRN------------------V 81 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~------------------~ 81 (103)
+..+|++.|+||++|.||+++|++|+++| +.++||+++|+.+...+. .++.+.++|.+. .
T Consensus 10 ~~~~v~~~G~FD~vH~GH~~~L~qAk~~g-~~Livgv~~d~~i~~~K~-~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~~ 87 (353)
T PTZ00308 10 GTIRVWVDGCFDMLHFGHANALRQARALG-DELFVGCHSDEEIMRNKG-PPVMHQEERYEALRACKWVDEVVEGYPYTTR 87 (353)
T ss_pred CcEEEEEEeecccCCHHHHHHHHHHHHhC-CEEEEEeCCHHHHhhcCC-CCCCCHHHHHHHHHhcCCccEEEECCCCCch
Confidence 45789999999999999999999999999 489999999976643222 469999999852 2
Q ss_pred HHHHHhcCCCEEEEeeCceee
Q 034114 82 EAYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f~ 102 (103)
.+|+++++|+++|+|+||+|.
T Consensus 88 ~~fI~~l~~d~vv~GdD~~~g 108 (353)
T PTZ00308 88 LEDLERLECDFVVHGDDISVD 108 (353)
T ss_pred HHHHHHhCCCEEEECCCCCCC
Confidence 468889999999999999985
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.66 E-value=3.9e-16 Score=104.61 Aligned_cols=75 Identities=24% Similarity=0.207 Sum_probs=60.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------H---HHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------E---AYI 85 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~---~fi 85 (103)
|++.|+||++|.||+.+|++|++++ +.++|++++|+....+ +..++.|.++|.+.+ + +++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~-~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQK-QKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhc-CCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5788999999999999999999998 5899999999865433 245788999997521 2 335
Q ss_pred HhcCCCEEEEeeCce
Q 034114 86 KVLGKWMHVLFFGSY 100 (103)
Q Consensus 86 ~~~~~~~~V~G~d~~ 100 (103)
+.++++++|+|+||.
T Consensus 79 ~~~~~~~vv~G~D~~ 93 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE 93 (125)
T ss_pred HHcCCCEEEECCCcc
Confidence 678999999999984
Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme
Back Show alignment and domain information
Probab=99.65 E-value=3.7e-16 Score=110.64 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=59.9
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc--CcEEEEEecCCCC----CcccccCCCCCHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMR----------------- 79 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d~~l----~~k~~~~~i~~f~~R~~----------------- 79 (103)
.+++.|+||++|.||+.|+++|.++++ +..++++|+++.- ..+....++.|.++|.+
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~ 80 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDK 80 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCH
Confidence 378999999999999999999999984 2678889988521 22222345667777753
Q ss_pred -----HHHHHHHhc----CCCEEEEeeCcee
Q 034114 80 -----NVEAYIKVL----GKWMHVLFFGSYF 101 (103)
Q Consensus 80 -----~~~~fi~~~----~~~~~V~G~d~~f 101 (103)
++++|++++ +++++|+|+||+|
T Consensus 81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~F 111 (180)
T cd02064 81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRF 111 (180)
T ss_pred HHHcCCHHHHHHHHHhhcCCeEEEEccCCCC
Confidence 356777643 7999999999998
FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.65 E-value=7.6e-16 Score=119.46 Aligned_cols=80 Identities=28% Similarity=0.272 Sum_probs=68.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHH------------------
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRN------------------ 80 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~------------------ 80 (103)
..++|++.|+||++|.||+.+|++|++++ ++++|||++|+... .|....++++.++|.+.
T Consensus 191 ~~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~ 269 (353)
T PTZ00308 191 GDRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDV 269 (353)
T ss_pred CCeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCC
Confidence 45789999999999999999999999998 59999999997553 34334689999999852
Q ss_pred HHHHHHhcCCCEEEEeeCce
Q 034114 81 VEAYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~~ 100 (103)
..+|+++++|+++|.|.|+.
T Consensus 270 ~~~~i~~~~~d~vv~G~d~~ 289 (353)
T PTZ00308 270 TKEVIDSLHINVVVGGKFSD 289 (353)
T ss_pred hHHHHHHhCCCEEEECCCCc
Confidence 36889999999999999985
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.61 E-value=3.6e-15 Score=117.66 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHHH--------------
Q 034114 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNV-------------- 81 (103)
Q Consensus 17 ~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~~-------------- 81 (103)
...+..+|+++|+||++|.||..+|++|++++ +.++|||++|+.+. +|. .+++|+++|.+.+
T Consensus 49 ~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~alk~VD~Vv~~ap 125 (418)
T PLN02406 49 KKKKPVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANKG--PPVTPMHERMIMVSGVKWVDEVIPDAP 125 (418)
T ss_pred cCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccCC--CCcCCHHHHHHHHHhcCCCceEEeCCc
Confidence 34455689999999999999999999999999 59999999997663 342 5899999998633
Q ss_pred ----HHHH----HhcCCCEEEEeeCcee
Q 034114 82 ----EAYI----KVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ----~~fi----~~~~~~~~V~G~d~~f 101 (103)
.+|+ ++++||++|+|.|+..
T Consensus 126 y~~~~d~~~~li~~~~~D~vVhGdD~~~ 153 (418)
T PLN02406 126 YAITEEFMNKLFNEYNIDYIIHGDDPCL 153 (418)
T ss_pred cccchHHHHHHHHHhCCCEEEECCCccc
Confidence 2343 4799999999999863
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Back Show alignment and domain information
Probab=99.60 E-value=4.6e-15 Score=113.13 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=61.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCCC----CCcccccCCCCCHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPM----LTNKQFAELIQPVDERMR----------------- 79 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~~----l~~k~~~~~i~~f~~R~~----------------- 79 (103)
.+++.|+||++|.||+.||++|.++|+. ..++++|+++. +..++...++.+.++|..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~ 94 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDE 94 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCH
Confidence 8999999999999999999999999842 45778999852 222222355777777653
Q ss_pred -----HHHHHHHh-----cCCCEEEEeeCcee
Q 034114 80 -----NVEAYIKV-----LGKWMHVLFFGSYF 101 (103)
Q Consensus 80 -----~~~~fi~~-----~~~~~~V~G~d~~f 101 (103)
++++|+++ ++++.+|+|+||+|
T Consensus 95 ~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~F 126 (305)
T PRK05627 95 EFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRF 126 (305)
T ss_pred HHhcCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 36788874 78999999999998
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.60 E-value=4.3e-15 Score=117.22 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=71.0
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHH--------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRN-------------- 80 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~-------------- 80 (103)
.|....++|++.|+||.+|.||+.+|++|+++| ++++|||++|+.+. .|....++++.++|...
T Consensus 246 ~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~VVi~a 324 (418)
T PLN02406 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDEVIIGA 324 (418)
T ss_pred CCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccEEEeCC
Confidence 455678899999999999999999999999998 59999999998663 34335789999999752
Q ss_pred ----HHHHHHhcCCCEEEEeeCc
Q 034114 81 ----VEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 81 ----~~~fi~~~~~~~~V~G~d~ 99 (103)
.+++|++++||++|+|.|+
T Consensus 325 p~~~~~~~i~~~~~d~vvhG~~~ 347 (418)
T PLN02406 325 PWEVSKDMITTFNISLVVHGTVA 347 (418)
T ss_pred CCCCCHHHHHHhCCCEEEECCcC
Confidence 3688999999999999875
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Back Show alignment and domain information
Probab=99.60 E-value=2.3e-15 Score=115.56 Aligned_cols=63 Identities=33% Similarity=0.665 Sum_probs=54.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+|+++||||.+|.||+.||++|.+++ +.++||+|+|+++++++ ..+ .|+++|.+.+++||++.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k-~~~-~~~e~R~~~v~~fl~~~ 64 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNK-VYP-IPYEDRKRKLENFIKKF 64 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcC-CCC-CCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999988 59999999998775433 234 99999999999998643
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.59 E-value=5.2e-15 Score=103.18 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=61.0
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+++++++|||||++.||+.++++|..+. +.++|+|..+ +.| .++.+++||.+.+++.+..+ |++.|.+++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~n---p~K---~plFsleER~~l~~~~~~~l-~nV~V~~f~ 71 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAIN---PSK---KPLFSLEERVELIREATKHL-PNVEVVGFS 71 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeC---CCc---CCCcCHHHHHHHHHHHhcCC-CceEEEecc
Confidence 5789999999999999999999999999 5999999998 444 57899999999888887766 777777775
>PLN02413 choline-phosphate cytidylyltransferase
Back Show alignment and domain information
Probab=99.57 E-value=1.3e-14 Score=109.54 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCCCccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------
Q 034114 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV-------------- 81 (103)
Q Consensus 17 ~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~-------------- 81 (103)
|..+..+|++.|+||.+|.||+.+|++|++++ .++++|||++|+.....+. .++++..+|.+.+
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG-rPIm~~~ER~e~V~acKyVDeVV~~aP 101 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG-KTVMTEDERYESLRHCKWVDEVIPDAP 101 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC-CCCCCHHHHHHHHHhcccccEEeeCCC
Confidence 34556789999999999999999999999997 3599999999986533222 4899999998522
Q ss_pred ----HHHHHhcCCCEEEEee
Q 034114 82 ----EAYIKVLGKWMHVLFF 97 (103)
Q Consensus 82 ----~~fi~~~~~~~~V~G~ 97 (103)
.+||++++||++|+|.
T Consensus 102 ~~~t~efI~~~kpDiVvhGd 121 (294)
T PLN02413 102 WVITQEFLDKHRIDYVAHDA 121 (294)
T ss_pred ccccHHHHHHhCCCEEEECC
Confidence 6899999999999995
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Back Show alignment and domain information
Probab=99.55 E-value=1.3e-14 Score=114.72 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=69.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NV 81 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~ 81 (103)
..++|++.|+||++|.||+.+|++|++++ ++++||+++|+... .|....++.++++|.+ +.
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~-~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~~~~~ 417 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLG-DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFEEDTP 417 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhC-CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCCCCCH
Confidence 35889999999999999999999999998 48999999997552 2332357999999975 24
Q ss_pred HHHHHhcCCCEEEEeeCceee
Q 034114 82 EAYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f~ 102 (103)
++|+++++||++|+|.||.|+
T Consensus 418 ~~~~~~~~~d~vv~G~d~~~~ 438 (473)
T PRK11316 418 QRLIAEILPDLLVKGGDYKPE 438 (473)
T ss_pred HHHHHHhCCCEEEECCCCCCC
Confidence 788989999999999999885
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.55 E-value=2.8e-14 Score=98.25 Aligned_cols=67 Identities=31% Similarity=0.457 Sum_probs=53.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
|++++++|||||+|.||+.++++|.+++ +.++|+++.+ +.| ..+.|+++|++++++.++.+ +++.|+
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~n---p~K---~~~~s~e~R~~~l~~~~~~~-~~v~v~ 67 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSIN---PDK---SNASDLDSRFKNVKNKLKDF-KNVEVL 67 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccC---CCC---CCCCCHHHHHHHHHHHHcCC-CCcEEe
Confidence 4689999999999999999999999998 5899999887 333 25689999999887776654 444444
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain
Back Show alignment and domain information
Probab=99.55 E-value=1.6e-14 Score=86.26 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=51.3
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
+++++|+|||+|.||+.++++|.++++ .+++++++++..++.++ .++.+.++|.++++++..
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALKY 62 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCC-CCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999999995 88899988765543332 378999999998887753
Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase
Back Show alignment and domain information
Probab=99.54 E-value=1.4e-14 Score=109.73 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCCC----CCcccccCCCCCHHHHH-------------------
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPM----LTNKQFAELIQPVDERM------------------- 78 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~~----l~~k~~~~~i~~f~~R~------------------- 78 (103)
+++.|+||++|.||++||+++.+.|++ ...+++||++. +.+..... +.+.++|.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l~~~Gvd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDKARQLQIKGVEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCC-CCCHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 478999999999999999999998742 57899999852 32221122 55545443
Q ss_pred -H--HHHHHHH-----hcCCCEEEEeeCcee
Q 034114 79 -R--NVEAYIK-----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 79 -~--~~~~fi~-----~~~~~~~V~G~d~~f 101 (103)
+ ++++|++ +++++.+|+|+||+|
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~F 110 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRF 110 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccC
Confidence 3 3578876 367999999999998
multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
>PRK07143 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.54 E-value=3.2e-14 Score=107.45 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=59.8
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHH----------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERM---------------- 78 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~---------------- 78 (103)
......+.+++.|+||++|.||++||++|++.+ ...+++|++.... .+.....+.+.++|.
T Consensus 10 ~~~~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~Gvd~~~~~~F 87 (279)
T PRK07143 10 KNFKFEKPTFVLGGFESFHLGHLELFKKAKESN--DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLGFKNIILLDF 87 (279)
T ss_pred CCCCCCCeEEEEccCCcCCHHHHHHHHHHHHCC--CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHCCCCEEEEeCC
Confidence 334456789999999999999999999999866 3556666653110 011123455555554
Q ss_pred ----H--HHHHHHHh---cCCCEEEEeeCcee
Q 034114 79 ----R--NVEAYIKV---LGKWMHVLFFGSYF 101 (103)
Q Consensus 79 ----~--~~~~fi~~---~~~~~~V~G~d~~f 101 (103)
+ ++++|++. ++++.+|+|+||+|
T Consensus 88 ~~~~a~ls~e~Fi~~ll~l~~~~iVvG~Df~F 119 (279)
T PRK07143 88 NEELQNLSGNDFIEKLTKNQVSFFVVGKDFRF 119 (279)
T ss_pred CHHHhCCCHHHHHHHHHhcCCCEEEECCCccc
Confidence 2 46888875 78999999999998
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.53 E-value=3.3e-14 Score=108.50 Aligned_cols=82 Identities=27% Similarity=0.366 Sum_probs=61.6
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC----CCCcccccCCCCCHHHH----------------
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP----MLTNKQFAELIQPVDER---------------- 77 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~----~l~~k~~~~~i~~f~~R---------------- 77 (103)
....+++.|+||++|.||++|+++|.+.+.. ...+++|+++ .+........+.|+.+|
T Consensus 14 ~~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~ 93 (304)
T COG0196 14 LRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLD 93 (304)
T ss_pred cCCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 3678999999999999999999999988742 6688899984 22222222334455554
Q ss_pred ----HH--HHHHHHH----hcCCCEEEEeeCcee
Q 034114 78 ----MR--NVEAYIK----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 78 ----~~--~~~~fi~----~~~~~~~V~G~d~~f 101 (103)
++ ++++|++ .++++.+|+|+||+|
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~F 127 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRF 127 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEeccccc
Confidence 43 3678887 778999999999998
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain
Back Show alignment and domain information
Probab=99.50 E-value=1.2e-13 Score=92.20 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI----------------- 85 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi----------------- 85 (103)
+++++|+|||+|.||+.++++|++.+.+.++|++.+++..... ...+.++++|.++++.+.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 4789999999999999999999999833788888877543211 245678888875433222
Q ss_pred ----------HhcCCCEEEEeeCceee
Q 034114 86 ----------KVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 86 ----------~~~~~~~~V~G~d~~f~ 102 (103)
..++++++|+|.|+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~ 105 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFG 105 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccC
Confidence 24578999999999875
Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.50 E-value=1.4e-13 Score=95.90 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=49.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
+++++++|||||+|.||+.++++|++.+ +.++++++.++ .| .++.|+++|+++++..++.
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~ 60 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATAH 60 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998 68999988763 22 3578999999877665543
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial
Back Show alignment and domain information
Probab=99.41 E-value=1.4e-12 Score=90.57 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=49.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
+++++|||||+|.||+.++++|.+.+ +.++++++.+ +.| ....|+++|+++++..++.. |.+.|
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~---p~k---~~~~~~~~R~~m~~~a~~~~-~~~~v 64 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKN---PSK---KPLFSLEERVELIKDATKHL-PNVRV 64 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCC---CCC---CCCcCHHHHHHHHHHHHhhC-CCeEE
Confidence 47899999999999999999999998 6899999854 222 24679999998876666432 44444
This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.40 E-value=4.7e-13 Score=105.21 Aligned_cols=79 Identities=27% Similarity=0.320 Sum_probs=68.4
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NVEA 83 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~~~ 83 (103)
++|++.|+||.+|.||..+|++|..+| +.++||+++|...+ -|...+|+.|.+.|.. .+++
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~edTP~~ 411 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDEDTPEE 411 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCCCHHH
Confidence 389999999999999999999999999 59999999996542 2444578999999963 4688
Q ss_pred HHHhcCCCEEEEeeCcee
Q 034114 84 YIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f 101 (103)
.|+.++||+.|.|.||.-
T Consensus 412 LI~~~~PdilVKGgDy~~ 429 (467)
T COG2870 412 LIEAVKPDILVKGGDYKI 429 (467)
T ss_pred HHHHhCcceEEccCCCCh
Confidence 899999999999999974
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins
Back Show alignment and domain information
Probab=99.39 E-value=2.2e-12 Score=90.08 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+++++|+|||+|.||+.++++|++.+ +.++|++++.+..+.+ +...++++|+++++..++.. +.+.|.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~~-~~~~v~ 68 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPDQ-ENIVVH 68 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCC-CCEEEE
Confidence 36899999999999999999999998 6999999988644332 34578999999988888653 445443
NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
>cd02163 PPAT Phosphopantetheine adenylyltransferase
Back Show alignment and domain information
Probab=99.37 E-value=3.1e-12 Score=88.68 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=46.1
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi 85 (103)
++++||||||+|.||+.++++|.+.+ +.++++++.++ .| ....++++|+++++..+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~ 56 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREAT 56 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHH
Confidence 37899999999999999999999998 68999998763 22 35788999998765544
Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT)
Back Show alignment and domain information
Probab=99.37 E-value=1.6e-12 Score=87.16 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=42.6
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhcC-cEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~~-~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++|+|||+|.||+.++++|.+.++. .++++.+..+..+.+ ..+.|+++|+++++.++...
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~ 62 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDD 62 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTC
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhc
Confidence 58999999999999999999999953 344444444333221 26899999999999999754
Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
>cd02156 nt_trans nucleotidyl transferase superfamily
Back Show alignment and domain information
Probab=99.34 E-value=9.7e-13 Score=85.52 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=46.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~ 83 (103)
+++++|+||++|.||+.++++|.+++ +.++++++.++..+.+ ..+.++++|.+.++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~ 57 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEE 57 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHH
Confidence 47899999999999999999999998 5899999988665432 246888999875543
nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.33 E-value=7.2e-12 Score=90.01 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=50.7
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
.++++++||+|||+|.||+.++++|.+... +.+++.++..+..+.. ..+.++++|+++++..++.
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~~---~~~~~~~~R~~m~~~a~~~ 68 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQ---KPLAPLEHRLAMLELAIAD 68 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHhcC
Confidence 357899999999999999999999998653 4777888776544321 2467999999888777664
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal
Back Show alignment and domain information
Probab=99.31 E-value=1.9e-11 Score=85.66 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=48.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.++....+. ....++++|+++++..+...
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~ 62 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESHTL---ENPFTAGERVLMIRRALEEE 62 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999998 6899988765322111 23367899999998887764
This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type
Back Show alignment and domain information
Probab=99.29 E-value=1.9e-11 Score=93.81 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=58.3
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC-EEEEeeC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW-MHVLFFG 98 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~-~~V~G~d 98 (103)
|++++++|+|||+|.||+.++++|.+++ +.++|+++..+..+++ ....|.++|+++++..++.. +. +.|.-++
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~~~---~~~~~~~~R~~~l~~~~~~~-~~~v~v~~~~ 74 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDSKA---KRPPPVQDRLRWLREIFKYQ-KNQIFIHHLN 74 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCccC---CCCCCHHHHHHHHHHHhccC-CCeEEEEEcC
Confidence 4588999999999999999999999998 6899999875433222 45679999999999988776 55 6665544
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase
Back Show alignment and domain information
Probab=99.28 E-value=2.2e-11 Score=85.88 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=49.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG 89 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~ 89 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.+++.-. + .....+.++|+++++..++..+
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~~~-k--~~~p~~~~eR~~mi~~al~~~~ 63 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQESH-T--LENPFTAGERILMITQSLKEVG 63 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCCCC-C--CCCCCCHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999998 68999887764321 1 1223466899999988887653
In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=99.28 E-value=2e-11 Score=88.25 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=51.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
.++++++||||||+|.||+.++++|.+..+ +.|+..++..+..+++ ..+.|..+|+++++..++
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~---~~~a~~~~R~~Ml~la~~ 66 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKK---KELASAEHRLAMLELAIE 66 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCC---ccCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999998763 5888888888766442 357888899876655554
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.28 E-value=1.2e-11 Score=94.50 Aligned_cols=80 Identities=26% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCC-CcccccCCCCCHHHHHHHH----------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-TNKQFAELIQPVDERMRNV---------------- 81 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~---------------- 81 (103)
++..+|++.|+||.+|.||.+.|.+|++++ ++++|||.+|+-+ .+|. .|+++.+||+.++
T Consensus 6 ~~~~rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ikWVDEVV~~APyv 82 (358)
T KOG2803|consen 6 NRPVRVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKAIKWVDEVVEGAPYV 82 (358)
T ss_pred CCceeEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhhcchhhhhhcCCCee
Confidence 444579999999999999999999999999 5999999999755 4443 6889999998643
Q ss_pred --HHHHHhcCCCEEEEeeCcee
Q 034114 82 --EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 --~~fi~~~~~~~~V~G~d~~f 101 (103)
.+++++++.+++|+|.|-.-
T Consensus 83 tt~~~md~y~cd~vvHGdDit~ 104 (358)
T KOG2803|consen 83 TTLEWMDKYGCDYVVHGDDITL 104 (358)
T ss_pred ccHHHHHHhCCeEEEeCCccee
Confidence 57777899999999999543
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.26 E-value=2.5e-11 Score=85.84 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=51.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC-CCEEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG-KWMHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~-~~~~V~ 95 (103)
++++++||||||+|.||+.+++++ ... +.++++++.... .+ +...|+++|+++++..++..+ +.+.|.
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~-d~v~~vP~~~~~--~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~ 70 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHF-DLVLLVPSIAHA--WG---KTMLDYETRCQLVDAFIQDLGLSNVQRS 70 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcC-CEEEEEECCCCc--cc---CCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 358899999999999999999985 333 588888887421 12 145699999999998888763 666664
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.23 E-value=1.3e-10 Score=86.37 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=53.1
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
..++++++||||||+|.||+.++++|.+... +.++++++.++..+ ....+++.|+++++..++..
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-----~~~~~~~~Rl~M~~lAi~~~ 85 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-----ADVSAAEHRLAMTRAAAASL 85 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-----CCCCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999998763 58888898875543 23569999999998888754
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.23 E-value=6.5e-11 Score=93.17 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC-----CCcccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM-----LTNKQFAELIQPVDERMRNVEAYIKVLGKWMH 93 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~-----l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~ 93 (103)
..+++++++|+|||+|.||+.+|++|...++ .++|+|.+++. +++. +.....++++|++.+++.+... +++.
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d-~l~v~v~~~~~~~~~~~~~~-~~~~~~s~~~R~~~l~~~~~~~-~~v~ 126 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQVD-ELHIIICYDDERDRKLFEDS-AMSQQPTVSDRLRWLLQTFKYQ-KNIK 126 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHCC-eeEEEEEccCCcchhhcccc-cccCCCCHHHHHHHHHHHhCCC-CCEE
Confidence 3457999999999999999999999999984 77777766532 2221 2245688999999888877654 4677
Q ss_pred EEee
Q 034114 94 VLFF 97 (103)
Q Consensus 94 V~G~ 97 (103)
|+.+
T Consensus 127 v~~~ 130 (399)
T PRK08099 127 IHAF 130 (399)
T ss_pred EEec
Confidence 7643
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain
Back Show alignment and domain information
Probab=99.23 E-value=8e-11 Score=83.94 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=48.1
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
++++|+|||+|.||+.++++|++.++ .++|++++.+..+.+ ....++++|+++++..+..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~-~vii~i~s~~~~~~~---~~p~~~~eR~~mi~~~~~~ 61 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAK-KVIILIGSARTARNI---KNPWTSEEREVMIEAALSD 61 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC-eEEEEeCCCCCCCCC---CCCcCHHHHHHHHHHHHhc
Confidence 68999999999999999999999995 899999776443322 2346889999888776654
N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase
Back Show alignment and domain information
Probab=99.22 E-value=7e-11 Score=84.08 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=52.0
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
++++||||||+|.||+.++++|.+.+. +.++++++.++..+. ....++++|+++++..++. .+.+.|.
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~m~~~~~~~-~~~i~v~ 69 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKP----PKPASFEHRLEMLKLAIED-NPKFEVS 69 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC----CCCCCHHHHHHHHHHHHcC-CCCEEEe
Confidence 478999999999999999999999872 478888887644321 3567999999988877763 2445443
Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=99.19 E-value=1.6e-10 Score=82.00 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=47.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC-CCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d-~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.+. +..+. ....++++|+++++..+...
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~----~~p~~~~~R~~mi~~a~~~~ 63 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL----KNPFTAGERILMIRKALEEE 63 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHhcC
Confidence 68999999999999999999999987 5888888654 22222 22357889999998888644
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=99.19 E-value=1.1e-10 Score=89.42 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccc-cCCCCCHHHHHHHH-------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQF-AELIQPVDERMRNV------------- 81 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~-~~~i~~f~~R~~~~------------- 81 (103)
.|...-++|++.|.||++|.||+..|+.|++++ ++++||+.+|+..+.++. ..|+++..||.-++
T Consensus 193 ~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg-dyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVdeVvvGa 271 (358)
T KOG2803|consen 193 EPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG-DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDEVVVGA 271 (358)
T ss_pred CCCCCCcEEEEcCchhhhccchHHHHHHHHhcc-CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccceEEEcC
Confidence 444567899999999999999999999999999 599999999987654443 35899999997432
Q ss_pred -----HHHHHhcCCCEEEEee
Q 034114 82 -----EAYIKVLGKWMHVLFF 97 (103)
Q Consensus 82 -----~~fi~~~~~~~~V~G~ 97 (103)
.+|++.++.+.+++|+
T Consensus 272 P~~v~s~~i~~~~~~~v~~g~ 292 (358)
T KOG2803|consen 272 PYEVTSEFIKLFNIDKVAHGT 292 (358)
T ss_pred chhccHHHHHhcCceEEEEec
Confidence 5788888899999998
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase
Back Show alignment and domain information
Probab=99.18 E-value=1e-10 Score=83.57 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=47.5
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
++||||||+|.||+.++++|.+... +.++++++.++..+.+ ....++++|+++++..++.
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~~ 61 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIED 61 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhc
Confidence 4799999999999999999999863 5788888888655432 2346999999888777664
This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Back Show alignment and domain information
Probab=99.18 E-value=1.7e-10 Score=88.87 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=49.4
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
|+++++||||||+|.||+.++++|.+.. -+.++++++.++..+.. ....++++|+++++..++.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~---~~~~~~~~R~~m~~~a~~~ 65 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKK---QKASNGEHRLNMLKLALKN 65 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999874 25899999887655322 3345668899877666653
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Back Show alignment and domain information
Probab=99.15 E-value=3e-10 Score=87.61 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=51.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
.+++++++|+|||+|.||+.++++|++.+ +.++|++++......+ +...++++|+++++..++.
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~---~~~~~~~~R~~mi~~~~~~ 68 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSI---KNPFSFEERAQMIRAALAG 68 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcC---CCCCCHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999 6999999865332222 1237889999887777663
>cd02169 Citrate_lyase_ligase Citrate lyase ligase
Back Show alignment and domain information
Probab=99.14 E-value=3e-10 Score=86.52 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV 56 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~v 56 (103)
+..+++.+.|+|||+|.||+.++++|.+.++ .+.|.+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d-~~~V~i 148 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAEND-WVHLFV 148 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhhCC-eEEEEE
Confidence 4468899999999999999999999999984 344443
Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase
Back Show alignment and domain information
Probab=99.11 E-value=3.8e-10 Score=87.12 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=56.9
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+.++++++|+|||+|.||+.++++|.+++ +.+.|+|..+ + ..+.|+++|++++++-+..+ +++.|+.++
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~-d~~~v~v~~~-----~---~~~f~~~~R~~~v~~~~~~~-~nv~v~~~~ 206 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQC-DWLHLFVVKE-----D---ASLFSYDERFALVKQGIQDL-SNVTVHNGS 206 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHHC-CEEEEEEEeC-----C---CCCCCHHHHHHHHHHHhcCC-CCEEEEecC
Confidence 35889999999999999999999999999 4777777532 1 34799999999999999887 677776553
ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Back Show alignment and domain information
Probab=98.96 E-value=5e-09 Score=77.25 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.4
Q ss_pred CCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhc-Cc-EEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 15 ~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~-viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
..+.....+.++||||||+|.||+.+++.|.+... +. .+|++-+.+.-.+..+ ....++++|+++++..++
T Consensus 16 ~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~ 88 (236)
T PLN02945 16 STGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACE 88 (236)
T ss_pred CccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhc
Confidence 34455667889999999999999999999888642 23 3333333322111111 245688999887655544
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic
Back Show alignment and domain information
Probab=98.80 E-value=2.4e-08 Score=73.34 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=46.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc-Cc-E-EE----EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DR-I-VV----GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~-v-iV----~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+.+++|||||+|.||+.+++.|.+..+ +. + ++ ..+.++.. | ....++++|+++++..++.. +.+.|.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~--k---~~~~~~~~Rl~Ml~lai~~~-~~~~v~ 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYG--K---KGLASAKHRVAMCRLAVQSS-DWIRVD 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCC--C---CCCCCHHHHHHHHHHHHccC-CCEEEE
Confidence 468999999999999999999988753 22 2 21 22333211 1 34568999999999888754 555554
Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=3.3e-08 Score=71.53 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=48.9
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
.++.++++|-|.|+|.||+.+|++|++.+ +.++|++++...-... +.-.++.||..++...+.
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~-devII~IGSA~~s~t~---~NPFTa~ER~~MI~~aL~ 65 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS-RYVILALGSAQMERNI---KNPFLAIEREQMILSNFS 65 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC-CEEEEEEccCCCCCCC---CCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999999999999 5999999986332111 112566788887766663
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Back Show alignment and domain information
Probab=98.76 E-value=2.6e-08 Score=76.08 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=59.5
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcC-cEEEEEecCCCC-CcccccCCCCCHHHHHHHH---------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPML-TNKQFAELIQPVDERMRNV--------------- 81 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~-~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~--------------- 81 (103)
.+.-+|++.|.||++|.||..-|++|+....+ +++||+++|++- +-| -..+++-.+|++.+
T Consensus 61 ~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~K--G~TVm~e~ERyE~lrHCryVDEVi~~APW 138 (348)
T KOG2804|consen 61 DRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFK--GRTVMNENERYEALRHCRYVDEVIPNAPW 138 (348)
T ss_pred CCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhcc--CceecChHHHHHHhhhhhhhhhhccCCCc
Confidence 44557999999999999999999999998855 999999999763 333 35678888888632
Q ss_pred ---HHHHHhcCCCEEEE
Q 034114 82 ---EAYIKVLGKWMHVL 95 (103)
Q Consensus 82 ---~~fi~~~~~~~~V~ 95 (103)
.+||++.+.|++.+
T Consensus 139 ~lt~EFL~~HKIDfVAH 155 (348)
T KOG2804|consen 139 TLTPEFLEKHKIDFVAH 155 (348)
T ss_pred cccHHHHHhcccceeec
Confidence 58888877777654
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=98.70 E-value=1.1e-07 Score=67.55 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC---EEEEe
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW---MHVLF 96 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~---~~V~G 96 (103)
+++++++.|.|-|+|.||+.++++|++.. +.++|++.++..-...+ .+ .+.-+|..++++-+++.+.+ +.+--
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~~--nP-fTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTLK--NP-FTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCccccccc--CC-CCccchhHHHHHHHHhcCCCceEEEEec
Confidence 57889999999999999999999999998 58999999874221110 11 23358888888888765554 44444
Q ss_pred eCce
Q 034114 97 FGSY 100 (103)
Q Consensus 97 ~d~~ 100 (103)
+|+.
T Consensus 78 ~d~~ 81 (172)
T COG1056 78 FDIE 81 (172)
T ss_pred Cccc
Confidence 4443
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain
Back Show alignment and domain information
Probab=98.63 E-value=2.1e-07 Score=66.49 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=47.6
Q ss_pred ecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 27 ~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
.-+|||+|.||+.++++|.+.++ .+.|++... + ....|+++|+++++..++.. +.+.|+.++
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d-~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~~-~~v~v~~~~ 66 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECD-WVHLFVVSE-----D---ASLFSFDERFALVKKGTKDL-DNVTVHSGS 66 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC-ceEEEEEeC-----C---CCCCCHHHHHHHHHHHhccC-CCEEEEecC
Confidence 45899999999999999999984 555555432 1 23569999999999999865 677776553
Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
>PRK13670 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.41 E-value=9.8e-07 Score=69.53 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=49.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHH--------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMR-------------------- 79 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~-------------------- 79 (103)
|+++-..--|||+|.||+.+|+++++.+. +..++++ +..++.... +. +.+..+|.+
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vm-p~~f~qrg~-p~-i~~~~~R~~~a~~~GvD~vielpf~~a~~ 77 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVM-SGNFVQRGE-PA-IVDKWTRAKMALENGVDLVVELPFLYSVQ 77 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEe-cHHHhCCCC-CC-CCCHHHHHHHHHHcCCCEEEEeCCchHhC
Confidence 34555666899999999999999999874 3445555 433333221 22 545445432
Q ss_pred HHHHHHH-------hcCCCEEEEeeC
Q 034114 80 NVEAYIK-------VLGKWMHVLFFG 98 (103)
Q Consensus 80 ~~~~fi~-------~~~~~~~V~G~d 98 (103)
++++|++ .++.+.+|+|+|
T Consensus 78 sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 78 SADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 4566665 368999999998
>PRK13671 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=98.17 E-value=8.3e-06 Score=62.43 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=50.7
Q ss_pred EecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------------H--
Q 034114 26 LGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV--------------------E-- 82 (103)
Q Consensus 26 ~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~--------------------~-- 82 (103)
..-+|||+|.||+.+++++++.. .+.++++++.++..+.+ ..+.+..+|.+++ +
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg~---pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGE---IAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCCC---CCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHH
Confidence 44699999999999999999974 35888888888655432 3445777776532 2
Q ss_pred -----HHHHhcCCCEEEEeeCc
Q 034114 83 -----AYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 83 -----~fi~~~~~~~~V~G~d~ 99 (103)
..+..++.|.++.|...
T Consensus 82 A~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 33446778888888753
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6
Back Show alignment and domain information
Probab=97.76 E-value=0.00012 Score=52.41 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhcCcEEE-EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~~~viV-~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
....+-+|++.||+.|+++|++.++ .+.| +|..| ..+.||++|++.+++=+..+ +++.|+
T Consensus 3 aIVMNaNPFT~GH~yLiE~Aa~~~d-~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L-~NV~V~ 63 (182)
T PF08218_consen 3 AIVMNANPFTLGHRYLIEQAAKECD-WLHVFVVSED---------RSLFPFADRYELVKEGTADL-PNVTVH 63 (182)
T ss_pred eEEEcCCCCccHHHHHHHHHHHhCC-EEEEEEEccc---------cCcCCHHHHHHHHHHHhCcC-CCEEEE
Confidence 3445779999999999999999984 4444 44444 34689999999999999887 666554
2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
>TIGR00018 panC pantoate--beta-alanine ligase
Back Show alignment and domain information
Probab=97.50 E-value=0.00045 Score=52.60 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=36.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC--C--CCCcccccCCCCCHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVE 82 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d--~--~l~~k~~~~~i~~f~~R~~~~~ 82 (103)
-|.+.|+ +|.||+.|+++|.+.+ + .+++|++ | +.+++.....+.+++++.+.++
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a-~--~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~ 83 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAEN-D--VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLE 83 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC-C--eEEEEecCChHHhCCccccccCCCCHHHHHHHHH
Confidence 4667888 9999999999999998 3 4555654 2 2232333345678888875443
This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Back Show alignment and domain information
Probab=97.50 E-value=0.00042 Score=52.67 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=33.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC----CCCcccccCCCCCHHHHHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP----MLTNKQFAELIQPVDERMR 79 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~----~l~~k~~~~~i~~f~~R~~ 79 (103)
|.+.|+ +|.||+.|+++|.+.+ + ++++|+++ +.+++.....+.+++++.+
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a-~--~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ 80 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEA-D--IVVVSIFVNPLQFGPNEDLDRYPRTLEADLA 80 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhC-C--EEEEeCCCCHHHhCCCccccccCCCHHHHHH
Confidence 445565 9999999999999998 3 56667763 2232322345677777765
>cd00560 PanC Pantoate-beta-alanine ligase
Back Show alignment and domain information
Probab=97.47 E-value=0.00044 Score=52.49 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=34.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC--CCCcccccCCCCCHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMR 79 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~--~l~~k~~~~~i~~f~~R~~ 79 (103)
.-.|.+.|+ +|.||+.|+++|.+.+ +.++|.+.-+| +.+++.....+.+++++.+
T Consensus 24 ig~V~TmG~---LH~GH~~LI~~a~~~a-~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ 80 (277)
T cd00560 24 IGFVPTMGA---LHEGHLSLVRRARAEN-DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLA 80 (277)
T ss_pred EEEEECCCc---ccHHHHHHHHHHHHhC-CEEEEEecCChhhcCCcccccccCCCHHHHHH
Confidence 445678888 9999999999999998 34443333333 2222322334567777764
PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
>TIGR00339 sopT ATP sulphurylase
Back Show alignment and domain information
Probab=97.46 E-value=0.0013 Score=51.98 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=43.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHH-hcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAEL-ARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~-~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..=||||+|.||..+++.|.+. ..+.+++.++..+ . | .-..|.+.|+++++.+++.+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~-~--k---~~~~~~~~R~~~~~~~~~~~ 245 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL-T--K---PGDIPAEVRMRAYEVLKEGY 245 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC-C--C---CCCCCHHHHHHHHHHHHhhC
Confidence 57888899999999999999999997 2246777777652 1 1 13456667776666666654
Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
>PLN02660 pantoate--beta-alanine ligase
Back Show alignment and domain information
Probab=97.44 E-value=0.00055 Score=52.18 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=36.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC--CC-CCc-ccccCCCCCHHHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--PM-LTN-KQFAELIQPVDERMRNV 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d--~~-l~~-k~~~~~i~~f~~R~~~~ 81 (103)
.--|.+.|+ +|.||+.|+++|.+.++ .+++|++ |. +.+ +.....+.+.+++.+.+
T Consensus 23 igfVpTmG~---LH~GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll 81 (284)
T PLN02660 23 IALVPTMGY---LHEGHLSLVRAARARAD---VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKL 81 (284)
T ss_pred EEEEEcCch---hhHHHHHHHHHHHHhCC---EEEEEEeCChHHcCCccccccCCCCHHHHHHHH
Confidence 344777788 99999999999999984 5556665 21 222 22234567777777543
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Back Show alignment and domain information
Probab=96.96 E-value=0.003 Score=48.79 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=51.7
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEE-EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE-Ee
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV-LF 96 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV-~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V-~G 96 (103)
.+.+++....+-+|+.+||+.|+++|..++ |.+-+ +|..| ..+.||++|++.+++=+..+ +++.+ -|
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc-DwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l-~Nvt~Hsg 211 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC-DWLHLFVVKED---------SSLFPYEDRLDLVKKGTADL-PNVTVHSG 211 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC-CEEEEEEEecc---------cccCCHHHHHHHHHHhhccC-CceEEecC
Confidence 356788888999999999999999999998 54433 34444 23689999999988877766 44444 34
Q ss_pred eCc
Q 034114 97 FGS 99 (103)
Q Consensus 97 ~d~ 99 (103)
.||
T Consensus 212 sdY 214 (352)
T COG3053 212 SDY 214 (352)
T ss_pred CCe
Confidence 444
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function
Back Show alignment and domain information
Probab=96.56 E-value=0.0078 Score=47.67 Aligned_cols=42 Identities=14% Similarity=0.409 Sum_probs=19.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML 62 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l 62 (103)
|+++-..--|+|+|.||...|+++++......+|+|-+..++
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFv 42 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFV 42 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSSEEEEEE--TTS
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCcc
Confidence 344445567999999999999999987644455555555444
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Back Show alignment and domain information
Probab=95.61 E-value=0.029 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.1
Q ss_pred EEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecC
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDG 59 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d 59 (103)
=..--|||.|.||+.+|++|.++. .+.++++++.|
T Consensus 5 Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd 40 (358)
T COG1323 5 GIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD 40 (358)
T ss_pred eeeeecCcccccHHHHHHHHHHhccCCceEEeeecc
Confidence 344579999999999999999965 35777777776
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2
Back Show alignment and domain information
Probab=95.57 E-value=0.15 Score=37.40 Aligned_cols=61 Identities=28% Similarity=0.301 Sum_probs=37.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
-++|+..=|-+|+|.||..|++.|.+.+.+.+.+-..-. ..| .--.|.+.|++..+.+++.
T Consensus 20 w~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG---~~k---~~d~~~~~r~~~~~~~~~~ 80 (215)
T PF01747_consen 20 WRRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG---PTK---PGDIPYEVRVRCYEALIDN 80 (215)
T ss_dssp -SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES---B-S---TTSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC---CCC---cCCCCHHHHHHHHHHHHHH
Confidence 356777778999999999999999998744454444333 111 1235667777766666665
7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=94.90 E-value=0.3 Score=38.89 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.8
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD 50 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~ 50 (103)
+-++|+..-|+|++|.||..+.+.|.+.++.
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdg 212 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDG 212 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCc
Confidence 3578999999999999999999999999853
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []
Back Show alignment and domain information
Probab=94.18 E-value=0.21 Score=38.14 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=25.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
+.+-+..|---+|.||+.|+++|...+ +.++|.+--||.
T Consensus 22 ~~igfVPTMGaLHeGHlsLi~~A~~~~-d~vVVSIFVNP~ 60 (280)
T PF02569_consen 22 KTIGFVPTMGALHEGHLSLIRRARAEN-DVVVVSIFVNPT 60 (280)
T ss_dssp SSEEEEEE-SS--HHHHHHHHHHHHHS-SEEEEEE---GG
T ss_pred CeEEEECCCchhhHHHHHHHHHHHhCC-CEEEEEECcCcc
Confidence 445555677778999999999999988 578777776753
Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
>cd00517 ATPS ATP-sulfurylase
Back Show alignment and domain information
Probab=93.69 E-value=0.8 Score=35.99 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=27.0
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEE
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVV 54 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV 54 (103)
++|+..=|-+|+|.||..+++.|.+.++ +.+.+
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll 190 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLL 190 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEE
Confidence 4778888999999999999999999874 33433
ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=93.33 E-value=0.41 Score=36.64 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=31.9
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
.++|.+.=|--.+|.||+.|+++|++.+ +.++|.+--||.
T Consensus 21 gk~Vg~VPTMG~LH~GHlsLVr~A~~~~-d~VVVSIFVNP~ 60 (285)
T COG0414 21 GKRVGLVPTMGNLHEGHLSLVRRAKKEN-DVVVVSIFVNPL 60 (285)
T ss_pred CCEEEEEcCCcccchHHHHHHHHHhhcC-CeEEEEEEeChh
Confidence 3445666688889999999999999998 588888877753
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Back Show alignment and domain information
Probab=92.81 E-value=0.96 Score=37.56 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=40.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW 91 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~ 91 (103)
-++|+..=|-+|+|.||..+++.|.+.++..+.+ .++.-.. +.--.|++-|++..+.+++.+.++
T Consensus 186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~lll----~p~~G~~--k~~d~~~~~r~~~~~~~~~~~p~~ 250 (568)
T PRK05537 186 WRRVVAFQTRNPLHRAHEELTKRAAREVGANLLI----HPVVGMT--KPGDIDHFTRVRCYEALLDKYPPA 250 (568)
T ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhcCCeEEE----ecCCCCC--CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888899999999999999999987422222 2222111 012345566666666555554333
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Back Show alignment and domain information
Probab=92.63 E-value=1.1 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR 49 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~ 49 (103)
-++|+..=|-+|+|.||..|.+.|.+.++
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~d 214 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIVD 214 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhcC
Confidence 36788888999999999999999999884
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Back Show alignment and domain information
Probab=91.64 E-value=0.76 Score=37.83 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=30.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
++-+.-|-=.+|.||+.|+++|++.+ +.++|.+--||
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~-d~vVvSIFVNP 57 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQEN-DVVLVSIFVNP 57 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 56667788899999999999999998 57777776665
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Back Show alignment and domain information
Probab=91.09 E-value=1.4 Score=32.72 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=40.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc---C-cEEEEEecCCCC-CcccccCCCCCHHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR---D-RIVVGVCDGPML-TNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~---~-~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
..++.|+|+|+..+|+.+.+-|+..-. . .|+-|+-+ |+- ..|+ +.+.|-..|+.+++..-+
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkK--KgLipa~hrv~~~ElAt~ 75 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKK--KGLIPAYHRVRMVELATE 75 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhc--cccchhhhHHHHHHhhhc
Confidence 456778999999999999999987541 1 55555544 322 2222 356777788877665543
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain
Back Show alignment and domain information
Probab=87.36 E-value=0.41 Score=34.07 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.5
Q ss_pred HHHHHHH----hcCCCEEEEeeCcee
Q 034114 80 NVEAYIK----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 80 ~~~~fi~----~~~~~~~V~G~d~~f 101 (103)
++++|++ +++++.+|+|+||+|
T Consensus 94 sa~~Fi~~L~~~l~~~~ivvG~df~F 119 (182)
T smart00764 94 DLRIFRKYIAPALGITHRYVGEEPFS 119 (182)
T ss_pred CHHHHHHHHHHHcCceEEEEcCCCCC
Confidence 4677774 579999999999998
Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
103
d1lw7a1 163
c.26.1.3 (A:57-219) Transcriptional regulator NadR
1e-07
d1k4ma_
213
c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad
2e-05
d1ej2a_ 167
c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad
5e-04
d1f9aa_ 164
c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad
0.001
d1kama_
189
c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad
0.001
d1qjca_ 157
c.26.1.3 (A:) Phosphopantetheine adenylyltransfera
0.003
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]
Score = 44.8 bits (105), Expect = 1e-07
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFA----ELIQPVDERMR 79
V+ G F +H GH + + D + V VC + K F + + V +R+R
Sbjct: 5 GVIFGKFYPVHTGHINMIYEAFSKV-DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLR 63
Query: 80 NVEAYIKVLGKWMHVLFF 97
++ K + +
Sbjct: 64 WMQQIFKYQKNQIFIHHL 81
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 213
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]
Score = 39.3 bits (90), Expect = 2e-05
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 1/79 (1%)
Query: 25 VLGGTFDRLHDGH-RLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ GGTFD +H GH + + + R+ + + P + A +Q +
Sbjct: 7 LFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIAD 66
Query: 84 YIKVLGKWMHVLFFGSYFQ 102
+ +
Sbjct: 67 KPLFTLDERELKRNAPSYT 85
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 34.8 bits (79), Expect = 5e-04
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84
+L G H GH +K+ E D +++ + + + + + +
Sbjct: 4 LLVGRMQPFHRGHLQVIKSILEEV-DELIICIGSAQLSHSIRDPFTAGERVMMLTKALSE 62
Query: 85 IKVLGKWMHVLFFGSYFQ 102
+ +++
Sbjct: 63 NGIPASRYYIIPVQDIEC 80
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 34.4 bits (78), Expect = 0.001
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84
+ G F H GH +K AE D I++G+ + ER+ +
Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEV-DEIIIGIGSAQKSHTLEN---PFTAGERILMITQS 59
Query: 85 IKVLGKWMH 93
+K +
Sbjct: 60 LKDYDLTYY 68
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 189
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]
Score = 34.3 bits (77), Expect = 0.001
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
Query: 25 VLGGTFDRLHDGH-RLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ GGTFD H+GH + + + D I P + E ++
Sbjct: 6 IFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQ 65
Query: 84 YIKVLGKWMH 93
+
Sbjct: 66 SNPSFKLELV 75
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 157
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]
Score = 33.0 bits (74), Expect = 0.003
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ GTFD + +GH + + ++ D +++ + P ++ER+ +
Sbjct: 3 AIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASPSKKPM------FTLEERVALAQQ 55
Query: 84 YIKVLGKWMHVLFFG 98
LG V F
Sbjct: 56 ATAHLGNVEVVGFSD 70
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 103
d1coza_ 126
CTP:glycerol-3-phosphate cytidylyltransferase {Bac
99.8
d1mrza2 157
FMN adenylyltransferase domain of bifunctional FAD
99.59
d1f9aa_ 164
Nicotinamide mononucleotide (NMN) adenylyltransfer
99.47
d1lw7a1 163
Transcriptional regulator NadR, NMN-adenylyltransf
99.45
d1ej2a_ 167
Nicotinamide mononucleotide (NMN) adenylyltransfer
99.42
d1o6ba_ 163
Phosphopantetheine adenylyltransferase {Bacillus s
99.31
d1qjca_ 157
Phosphopantetheine adenylyltransferase {Escherichi
99.28
d1tfua_ 157
Phosphopantetheine adenylyltransferase {Mycobacter
99.26
d1od6a_ 160
Phosphopantetheine adenylyltransferase {Thermus th
99.25
d1vlha_ 157
Phosphopantetheine adenylyltransferase {Thermotoga
99.2
d1kama_
189
Nicotinamide mononucleotide (NMN) adenylyltransfer
99.09
d1kr2a_
271
Nicotinamide mononucleotide (NMN) adenylyltransfer
99.02
d1k4ma_
213
Nicotinamide mononucleotide (NMN) adenylyltransfer
99.01
d1nuua_
233
Cytosolic NMN/NAMN adenylyltransferase {Human (Hom
98.92
d1jhda2
223
ATP sulfurylase catalytic domain {Sulfur-oxidizing
98.77
d1g8fa2
221
ATP sulfurylase catalytic domain {Baker's yeast (S
95.94
d1v8fa_
276
Pantothenate synthetase (Pantoate-beta-alanine lig
94.73
d1v47a2
214
ATP sulfurylase catalytic domain {Thermus thermoph
94.39
d2a84a1
286
Pantothenate synthetase (Pantoate-beta-alanine lig
93.98
d1ihoa_
282
Pantothenate synthetase (Pantoate-beta-alanine lig
93.43
d1x6va2
235
ATP sulfurylase catalytic domain {Human (Homo sapi
90.2
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Cytidylyltransferase
domain: CTP:glycerol-3-phosphate cytidylyltransferase
species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=2e-20 Score=123.05 Aligned_cols=78 Identities=24% Similarity=0.189 Sum_probs=66.9
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHH------------------HH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRN------------------VE 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~------------------~~ 82 (103)
|++|++.|+||++|.||+.+|++|+++| +.++||+++|+....++ .+++.|+++|... ..
T Consensus 1 Mk~V~~~G~FD~lH~GH~~~l~~Ak~~g-d~liV~v~sD~~~~~~k-~~pi~~~~eR~~~l~~~~~Vd~v~~~~~~~~~~ 78 (126)
T d1coza_ 1 MKKVITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILETIRYVDEVIPEKNWEQKK 78 (126)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS-SEEEEEEECHHHHHHHT-CCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred CcEEEEeeEeCCCCHHHHHHHHHHHhhC-ceeeeeeeccchhhhcc-CcccCCHHHHHHHhhhhcccceeeecccccccH
Confidence 6899999999999999999999999998 59999999997553332 3689999999863 35
Q ss_pred HHHHhcCCCEEEEeeCce
Q 034114 83 AYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 83 ~fi~~~~~~~~V~G~d~~ 100 (103)
+++.+++||++++|.||.
T Consensus 79 ~~i~~~~~d~~v~G~D~~ 96 (126)
T d1coza_ 79 QDIIDHNIDVFVMGDDWE 96 (126)
T ss_dssp HHHHHTTCSEEEEEGGGT
T ss_pred hhhhccCCCEeeeccccc
Confidence 677789999999999985
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: FMN adenylyltransferase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=1.2e-15 Score=103.87 Aligned_cols=77 Identities=25% Similarity=0.275 Sum_probs=57.4
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhc--CcEEEEEecCC---CCCcccccCCCCCHHHHHH-------------------
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP---MLTNKQFAELIQPVDERMR------------------- 79 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d~---~l~~k~~~~~i~~f~~R~~------------------- 79 (103)
|++.|+|||+|.||++||++|.+.+. ....+++|+++ .+.++ .+..+.++++|.+
T Consensus 1 VvtiG~FDGvH~GHq~li~~~~~~a~~~~~~~~v~tf~~~p~~~~~~-~~~~l~~~~~k~~~l~~~g~~~~l~f~~~~~l 79 (157)
T d1mrza2 1 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSRYARTVVLDFFRIKDL 79 (157)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTTTSCEEEECHHHHTTC
T ss_pred CEEEEcccchhHHHHHHHHHHHHHHHHcCCCceEeecCCCchheEec-cccccccHHHhhhhhhcccceeeehhhhHhhh
Confidence 57899999999999999999988762 35556667663 22222 2345677777754
Q ss_pred HHHHHHHhc--CCCEEEEeeCcee
Q 034114 80 NVEAYIKVL--GKWMHVLFFGSYF 101 (103)
Q Consensus 80 ~~~~fi~~~--~~~~~V~G~d~~f 101 (103)
++++|++++ +.+.+|+|+||+|
T Consensus 80 s~~~Fi~~~l~~~~~ivvG~Df~F 103 (157)
T d1mrza2 80 TPEGFVERYLSGVSAVVVGRDFRF 103 (157)
T ss_dssp CHHHHHHHHCTTCCEEEEETTCCB
T ss_pred hhhHHHHHHhhcCcEEEEecCccc
Confidence 358899865 7889999999998
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.47 E-value=6.5e-14 Score=92.59 Aligned_cols=64 Identities=23% Similarity=0.295 Sum_probs=51.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG 89 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~ 89 (103)
|+ ++++|+|||+|.||+.++++|++.+ +.++|++++....+. .....++++|.++++..+....
T Consensus 1 mk-gl~~G~FdP~H~GH~~li~~a~~~~-d~v~v~i~~~~~~~~---~~~~~s~~~R~~~i~~~~~~~~ 64 (164)
T d1f9aa_ 1 LR-GFIIGRFQPFHKGHLEVIKKIAEEV-DEIIIGIGSAQKSHT---LENPFTAGERILMITQSLKDYD 64 (164)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSS---SSCCSCHHHHHHHHHHHHTTSS
T ss_pred CE-EEEecccCCCCHHHHHHHHHHHHhC-CCeEEEecCCccccC---cCCCCCHHHHHHHHHHHhhhcC
Confidence 45 8999999999999999999999998 588888887643322 2345799999999988887654
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]
Probab=99.45 E-value=6.3e-14 Score=91.42 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=58.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCc----ccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN----KQFAELIQPVDERMRNVEAYIKVLGKWMHVLF 96 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~----k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G 96 (103)
.++++++|+|||+|.||+.++++|.+.+ +.++|+++.++..+. ......+.++++|.+.+++........+.+..
T Consensus 2 kkigl~~G~FdP~H~GH~~l~~~a~~~~-d~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~ 80 (163)
T d1lw7a1 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV-DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHH 80 (163)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC-SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEE
T ss_pred CeEEEEeeeCCCCCHHHHHHHHHHHHhC-CccEEEEECCCCccccccccccccCCCCHHHHHHHHHHhCccCCceEEEEe
Confidence 4789999999999999999999999998 589999998853211 11235678999999888887766656666555
Q ss_pred e
Q 034114 97 F 97 (103)
Q Consensus 97 ~ 97 (103)
.
T Consensus 81 ~ 81 (163)
T d1lw7a1 81 L 81 (163)
T ss_dssp E
T ss_pred c
Confidence 4
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.42 E-value=2.1e-13 Score=90.62 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=50.4
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++++|+|||+|.||+.++++|++.+ +.++|+|++......+ ....++++|.++++..++..
T Consensus 3 gi~~G~FdP~H~GH~~ii~~a~~~~-d~v~v~i~~~~~~~~~---~~~~~~~~R~~mi~~~~~~~ 63 (167)
T d1ej2a_ 3 GLLVGRMQPFHRGHLQVIKSILEEV-DELIICIGSAQLSHSI---RDPFTAGERVMMLTKALSEN 63 (167)
T ss_dssp EEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSSS---SSCSCHHHHHHHHHHHHHHT
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC-CceEEEEecCCCCCCc---cccccHHHHHHHHHHHHHHc
Confidence 8999999999999999999999998 5888888876433222 34678999999998888754
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]
Probab=99.31 E-value=4.9e-12 Score=83.10 Aligned_cols=60 Identities=25% Similarity=0.361 Sum_probs=48.3
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++++||||||+|.||+.++++|.+.+ |.++|.++.++ .+ ....++++|.+++.......
T Consensus 2 ~IaifgGsFdPiH~GHl~i~~~a~~~~-D~v~v~~~~~~---~~---~~~~~~~~r~~~~~~~~~~~ 61 (163)
T d1o6ba_ 2 SIAVCPGSFDPVTYGHLDIIKRGAHIF-EQVYVCVLNNS---SK---KPLFSVEERCELLREVTKDI 61 (163)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCCC---SS---CCSSCHHHHHHHHHHHHTTC
T ss_pred eEEEeccccCCCCHHHHHHHHHHHHhC-CEEEEcccccc---cc---cccCCHHHHHHHHhhhcccc
Confidence 579999999999999999999999998 58888877652 22 35678899998877666543
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=9.2e-12 Score=80.71 Aligned_cols=58 Identities=17% Similarity=0.378 Sum_probs=44.2
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
+++++||+|||+|.||+.++++|.+.+ |.++++++.++..+ ...+..+|...+...+.
T Consensus 1 k~AifgGsFdP~H~GHl~li~~a~~~~-D~v~v~~~~~~~~k------~~~~~~~~~~~~~~~~~ 58 (157)
T d1qjca_ 1 KRAIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASPSKK------PMFTLEERVALAQQATA 58 (157)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEESCCSSC------CSSCHHHHHHHHHHHTT
T ss_pred CEEEEeeccCCCCHHHHHHHHHHHHhC-CEeeecccCccccc------cccCHHHHHHHHHHHHH
Confidence 579999999999999999999999998 58999999874322 23455566655554443
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=4e-12 Score=82.76 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=35.3
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
|+++++||||||+|.||+.++++|++.+ +.++|++...+.
T Consensus 1 m~~Av~~GsFdPiH~GHl~i~~~a~~~~-d~~~v~~~~~~~ 40 (157)
T d1tfua_ 1 MTGAVCPGSFDPVTLGHVDIFERAAAQF-DEVVVAILVNPA 40 (157)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECCSS
T ss_pred CCEeEeCcCCCCCCHHHHHHHHHHHHhc-ChHHhhccccCc
Confidence 6899999999999999999999999998 578888776643
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=1.6e-11 Score=79.86 Aligned_cols=37 Identities=32% Similarity=0.614 Sum_probs=32.7
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
+++||||||+|.||+.++++|.+.+ |.++++++.++.
T Consensus 3 ~ifgGsFdP~H~GHl~ii~~a~~~~-D~v~i~~~~~~~ 39 (160)
T d1od6a_ 3 VVYPGSFDPLTNGHLDVIQRASRLF-EKVTVAVLENPS 39 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECC--
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhC-CEEEEeccCCCC
Confidence 5999999999999999999999998 589999988743
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Phosphopantetheine adenylyltransferase
species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=3.3e-11 Score=78.31 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=33.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
|+ +++||||||+|.||+.++++|.+.+ +.++++++..+
T Consensus 1 Mk-aifgGsFdPiH~GHl~i~~~a~~~~-D~v~v~~~~~~ 38 (157)
T d1vlha_ 1 MK-AVYPGSFDPITLGHVDIIKRALSIF-DELVVLVTENP 38 (157)
T ss_dssp CE-EEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEECCT
T ss_pred Ce-EEEeecCCCCcHHHHHHHHHHHHhc-Ccccccccccc
Confidence 45 8999999999999999999999998 58888888764
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Bacillus subtilis [TaxId: 1423]
Probab=99.09 E-value=2.3e-10 Score=75.00 Aligned_cols=39 Identities=31% Similarity=0.314 Sum_probs=31.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDG 59 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d 59 (103)
.+++++||+|||+|.||+.++++|.+.++ +.++++++..
T Consensus 2 kkIalfgGSFdP~H~GH~~ii~~a~~~~~~~~V~~~~~~~ 41 (189)
T d1kama_ 2 KKIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQI 41 (189)
T ss_dssp CEEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred CEEEEeccCcCCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 46789999999999999999999999984 3555555443
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=3.1e-10 Score=81.63 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=47.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc-------CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR-------DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~-------~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
+++++|||||+|.||+.+++.|.+... +.+++.++.++. + +..+.|+++|++|++.+++.. +.+.|
T Consensus 6 v~l~~GSFdP~H~GHl~ia~~a~~~l~~~~~~~~~~~~~~P~~~~~---~--k~~~~s~~~Rl~Ml~la~~~~-~~~~v 78 (271)
T d1kr2a_ 6 VLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAY---K--KKGLIPAYHRVIMAELATKNS-KWVEV 78 (271)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGG---C--CTTCCCHHHHHHHHHHHTTTC-SSEEE
T ss_pred EEEEccccCcchHHHHHHHHHHHHHHhhccccceeEEEEecCCCCC---c--CCCCCCHHHHHHHHHHHHhcC-CCEEE
Confidence 568899999999999999999886431 134444454422 1 235689999999999988764 55555
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Nicotinamide mononucleotide (NMN) adenylyltransferase
species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=8.1e-10 Score=73.58 Aligned_cols=42 Identities=29% Similarity=0.362 Sum_probs=36.2
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPML 62 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l 62 (103)
..++++||||||+|.||+.+++.|.+..+ +.++++++.++..
T Consensus 3 ~~~AlfgGSFnP~h~GHl~~~~~a~~~~~~d~v~~~p~~~~~~ 45 (213)
T d1k4ma_ 3 SLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPH 45 (213)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTT
T ss_pred ccEEEEecCcCcCcHHHHHHHHHHHHHcCCCEEEEEEeCCCch
Confidence 35799999999999999999999999763 5899999988544
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Cytosolic NMN/NAMN adenylyltransferase
species: Human (Homo sapiens), FKSG76 [TaxId: 9606]
Probab=98.92 E-value=1.9e-09 Score=75.14 Aligned_cols=67 Identities=10% Similarity=0.244 Sum_probs=45.0
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc--CcE--EEE-Ee-cCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR--DRI--VVG-VC-DGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~--~~v--iV~-vt-~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
+.+++|||||+|.||+.+++.|.+..+ +.. +.+ +. .+ ..+ +.....++++|+++++..++.. +.+.|
T Consensus 6 vl~~~GSFdP~H~GHl~i~~~a~~~~~~~~~~~~~~~~~~p~~---~~~-~~~~~~~~~~R~~M~~la~~~~-~~~~v 78 (233)
T d1nuua_ 6 VLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVN---DTY-GKKDLAASHHRVAMARLALQTS-DWIRV 78 (233)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHHHHHHSSEEEEEEEEEECC---TTC-SSSCCCCHHHHHHHHHHHGGGC-SSEEE
T ss_pred EEEEeeeeCccHHHHHHHHHHHHHHhCcccceeeeeEEEccCC---CCc-ccCccCCHHHHHHHHHHHHhcc-CCEEE
Confidence 467899999999999999999988642 222 111 11 12 111 1245789999999998887653 44444
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]
Probab=98.77 E-value=8.8e-09 Score=71.53 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=37.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCC
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLT 63 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~ 63 (103)
+.++|+.-|||||+|.||+.+++.|.+.. .+.+++.++..+..+
T Consensus 18 ~~~~v~~f~TfnP~H~GHl~ia~~a~~~~~ld~v~~iP~~~~p~K 62 (223)
T d1jhda2 18 GWSKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGKLKK 62 (223)
T ss_dssp TCSSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECCCCT
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHHHhCcCceEEecccCCCCc
Confidence 45678888999999999999999999875 358999999986554
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.029 Score=38.36 Aligned_cols=63 Identities=21% Similarity=0.178 Sum_probs=40.1
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+.++|+..=|=+++|.||..+++.|.+..++.+.|-+.-. .++ .-=.+.+.|+...+.+++++
T Consensus 19 g~~~v~afqTrnp~Hr~He~i~~~a~~~~~~~lli~p~vg----~~k--~gd~~~~~~~~~~~~~~~~~ 81 (221)
T d1g8fa2 19 QWDRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVG----LTK--PGDIDHHTRVRVYQEIIKRY 81 (221)
T ss_dssp TCCCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCS----BCS--TTCCCHHHHHHHHHHHGGGS
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHHhcCCCEEEeeccc----CCc--cccCCHHHHHHHHHHHHHhc
Confidence 3567887889999999999999999987644444433322 111 11245566666555555544
>d1v8fa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Thermus thermophilus [TaxId: 274]
Probab=94.73 E-value=0.032 Score=39.54 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=30.9
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
.+-+..|==.+|.||+.|+++|.+.+ +.++|.+--+|.
T Consensus 18 ~i~~VPTMGaLH~GHlsLi~~a~~~~-~~vvvSIFVNP~ 55 (276)
T d1v8fa_ 18 GVGFVPTMGYLHRGHLALVERARREN-PFVVVSVFVNPL 55 (276)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHC-SEEEEEECCCGG
T ss_pred CEEEEcCCccHhHHHHHHHHHHHHhC-CCEEEEEEecCc
Confidence 36667788899999999999999998 477777766653
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Thermus thermophilus [TaxId: 274]
Probab=94.39 E-value=0.14 Score=34.73 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=27.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEec
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCD 58 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~ 58 (103)
.++|+.-=|=+++|.||..+++.|.+.+ +.+.|-+.-
T Consensus 20 w~~v~aFqTrnp~Hr~He~i~~~a~~~~-~~lli~p~v 56 (214)
T d1v47a2 20 WRKVVAFQTRNAPHRAHEYLIRLGLELA-DGVLVHPIL 56 (214)
T ss_dssp CCSEEEEEESSCCCHHHHHHHHHHHHHS-SEEEEEEBC
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhc-CCEEEeeee
Confidence 4566665577999999999999999987 445544443
>d2a84a1 c.26.1.4 (A:3-288) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Mycobacterium tuberculosis [TaxId: 1773]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.98 E-value=0.043 Score=39.01 Aligned_cols=39 Identities=31% Similarity=0.485 Sum_probs=30.9
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHH-HhcCcEEEEEecCCC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAE-LARDRIVVGVCDGPM 61 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~-~~~~~viV~vt~d~~ 61 (103)
+.+-+.-|=-.+|.||+.|+++|.+ .+ +.++|.+--+|.
T Consensus 30 ~~i~~VPTMGaLH~GHlsLi~~a~~~~~-~~vvvSIFVNP~ 69 (286)
T d2a84a1 30 RRVMLVPTMGALHEGHLALVRAAKRVPG-SVVVVSIFVNPM 69 (286)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHTSTT-CEEEEEECCCCC
T ss_pred CeEEEEeCCcchhHHHHHHHHHHhhcCC-CEEEEEEeeccc
Confidence 4566778889999999999999997 45 577777776653
>d1ihoa_ c.26.1.4 (A:) Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC) {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
domain: Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.051 Score=38.55 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=29.3
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG 59 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d 59 (103)
+.+-+..|==.+|.||+.|+++|.+.+ +.++|.+--+
T Consensus 22 ~~ig~VPTMGaLH~GHlsLi~~A~~~~-~~vvvSIFVN 58 (282)
T d1ihoa_ 22 KRVALVPTMGNLHDGHMKLVDEAKARA-DVVVVSIFVN 58 (282)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHC-SEEEEEECCC
T ss_pred CcEEEEcCCcchhHHHHHHHHHHHHhC-CcEEEEEEec
Confidence 456666788889999999999999998 4777766544
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: ATP sulfurylase catalytic domain
domain: ATP sulfurylase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.20 E-value=0.92 Score=30.82 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~ 48 (103)
+.++|+..=|=+++|.||..+++.|.+.+
T Consensus 22 gw~~VvaFqTRNp~HraHe~i~~~a~~~~ 50 (235)
T d1x6va2 22 NADAVSAFQLRNPVHNGHALLMQDTHKQL 50 (235)
T ss_dssp TCSEEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEeecCCCCcHHHHHHHHHHHHHH
Confidence 34677777799999999999999998864