Citrus Sinensis ID: 034120


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA
cccccccccccccHHHHHHccccccccccHHHHcccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccEccHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
mevpgsskkmIATQEEMVearvpipyrdqcahlliplnkcrqaefylpwkcenerhsyekCEYELVMERMLQMQKIREEEAKLKQsqtqkgapiplipktana
mevpgsskkmiatQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLkqsqtqkgapiplipktana
MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA
******************EARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERML********************************
***************EMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQ************************IP*****
********KMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREE************APIPLIPKTANA
**********IATQ*EMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLK*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query103 2.2.26 [Sep-21-2011]
Q9SKC9103 NADH dehydrogenase [ubiqu yes no 1.0 1.0 0.786 3e-42
Q54V61112 NADH dehydrogenase [ubiqu yes no 0.728 0.669 0.467 3e-16
Q0MQE2137 NADH dehydrogenase [ubiqu N/A no 0.660 0.496 0.382 5e-08
Q0MQE3137 NADH dehydrogenase [ubiqu N/A no 0.660 0.496 0.382 5e-08
Q0MQE4137 NADH dehydrogenase [ubiqu yes no 0.660 0.496 0.382 6e-08
P17568137 NADH dehydrogenase [ubiqu yes no 0.660 0.496 0.382 8e-08
Q9CR61137 NADH dehydrogenase [ubiqu yes no 0.640 0.481 0.378 2e-07
Q02368137 NADH dehydrogenase [ubiqu yes no 0.660 0.496 0.367 2e-07
P90789123 NADH dehydrogenase [ubiqu yes no 0.854 0.715 0.365 5e-06
>sp|Q9SKC9|NDUB7_ARATH NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1 Back     alignment and function desciption
 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 89/103 (86%)

Query: 1   MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60
           MEVPGSSKKMIATQEEM  A++ +  RD CAHLLIPLNKCRQAEFYLPWKCE+ERH YEK
Sbjct: 1   MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEK 60

Query: 61  CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA 103
           CEYELVMERML M+KIREEEA  KQ++ Q  A +PLIPKTANA
Sbjct: 61  CEYELVMERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTANA 103




Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Arabidopsis thaliana (taxid: 3702)
>sp|Q54V61|NDUB7_DICDI NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum GN=ndufb7 PE=3 SV=1 Back     alignment and function description
>sp|Q0MQE2|NDUB7_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo pygmaeus GN=NDUFB7 PE=2 SV=3 Back     alignment and function description
>sp|Q0MQE3|NDUB7_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Gorilla gorilla gorilla GN=NDUFB7 PE=2 SV=3 Back     alignment and function description
>sp|Q0MQE4|NDUB7_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pan troglodytes GN=NDUFB7 PE=2 SV=3 Back     alignment and function description
>sp|P17568|NDUB7_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Homo sapiens GN=NDUFB7 PE=1 SV=4 Back     alignment and function description
>sp|Q9CR61|NDUB7_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Mus musculus GN=Ndufb7 PE=1 SV=3 Back     alignment and function description
>sp|Q02368|NDUB7_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Bos taurus GN=NDUFB7 PE=1 SV=2 Back     alignment and function description
>sp|P90789|NDUB7_CAEEL NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Caenorhabditis elegans GN=D2030.4 PE=3 SV=1 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query103
TAIR|locus:2041135103 AT2G02050 [Arabidopsis thalian 1.0 1.0 0.786 4.2e-40
ASPGD|ASPL000004132092 AN11377 [Emericella nidulans ( 0.640 0.717 0.666 2.1e-22
DICTYBASE|DDB_G0280595112 ndufb7 "NADH dehydrogenase ubi 0.718 0.660 0.473 1.2e-17
FB|FBgn0030605117 CG5548 [Drosophila melanogaste 0.786 0.692 0.421 4.4e-13
UNIPROTKB|P17568137 NDUFB7 "NADH dehydrogenase [ub 0.912 0.686 0.34 1.2e-10
UNIPROTKB|F1SCH1106 NDUFB7 "Uncharacterized protei 0.796 0.773 0.391 2e-10
ZFIN|ZDB-GENE-040426-1886120 ndufb7 "NADH dehydrogenase (ub 0.786 0.675 0.361 2e-10
RGD|1308550137 Ndufb7 "NADH dehydrogenase (ub 0.786 0.591 0.333 3.2e-10
UNIPROTKB|E2QV28137 NDUFB7 "Uncharacterized protei 0.815 0.613 0.368 5.2e-10
MGI|MGI:1914166137 Ndufb7 "NADH dehydrogenase (ub 0.796 0.598 0.333 6.6e-10
TAIR|locus:2041135 AT2G02050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 81/103 (78%), Positives = 89/103 (86%)

Query:     1 MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60
             MEVPGSSKKMIATQEEM  A++ +  RD CAHLLIPLNKCRQAEFYLPWKCE+ERH YEK
Sbjct:     1 MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEK 60

Query:    61 CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTANA 103
             CEYELVMERML M+KIREEEA  KQ++ Q  A +PLIPKTANA
Sbjct:    61 CEYELVMERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTANA 103




GO:0003954 "NADH dehydrogenase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA;IDA
GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS
GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0009853 "photorespiration" evidence=RCA;TAS
GO:0031966 "mitochondrial membrane" evidence=IDA
GO:0045271 "respiratory chain complex I" evidence=IDA
GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
ASPGD|ASPL0000041320 AN11377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280595 ndufb7 "NADH dehydrogenase ubiquinone 1 beta subcomplex subunit 7" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0030605 CG5548 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P17568 NDUFB7 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SCH1 NDUFB7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1886 ndufb7 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1308550 Ndufb7 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV28 NDUFB7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914166 Ndufb7 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SKC9NDUB7_ARATHNo assigned EC number0.78641.01.0yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query103
pfam0567666 pfam05676, NDUF_B7, NADH-ubiquinone oxidoreductase 7e-33
>gnl|CDD|147693 pfam05676, NDUF_B7, NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) Back     alignment and domain information
 Score =  108 bits (272), Expect = 7e-33
 Identities = 44/66 (66%), Positives = 54/66 (81%)

Query: 9  KMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVME 68
           MIATQEEM  A++P+ YRD CAHLLIPLNKCR+ EF LPWKCE+ERHSYEKC+Y+  + 
Sbjct: 1  VMIATQEEMEAAKLPLGYRDYCAHLLIPLNKCRRDEFPLPWKCEHERHSYEKCQYDDYVL 60

Query: 69 RMLQMQ 74
          RM + +
Sbjct: 61 RMKEYE 66


This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterized process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of human mitochondrial encephalomyopathies. Length = 66

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 103
KOG3468128 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B 100.0
PF0567666 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subuni 100.0
PF0858369 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 89.14
>KOG3468 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B18 subunit [Energy production and conversion] Back     alignment and domain information
Probab=100.00  E-value=2.8e-43  Score=253.84  Aligned_cols=97  Identities=57%  Similarity=0.945  Sum_probs=90.7

Q ss_pred             CCCCCccCCHHHHHhCCCCCCCCcchhhhccChhhhhhhccCCCcCCCccccccccchHHHHHHHHHHHHHHHHHHHHHh
Q 034120            5 GSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERMLQMQKIREEEAKLK   84 (103)
Q Consensus         5 ~~~r~m~aTqeEM~~ArlPl~~RDyCAh~LI~l~kCr~~~~~~~~~C~hErH~YekCqy~D~~~Rmke~er~r~~~~~~~   84 (103)
                      +++|+|+||||||++|+|+|+.||||||+||+|++|++++||++|+|.+|||+|++|+|+||+.|||||||+|++-+|.+
T Consensus        32 Rk~r~MiATqeEM~~akl~l~~RDyCAH~lI~l~kCr~~~fp~~~kC~~erh~~dkCEyed~vmRmkefeRErrlLqrq~  111 (128)
T KOG3468|consen   32 RKEREMIATQEEMEAAKLALGSRDYCAHLLIPLNKCRQDEFPFPWKCEDERHVYDKCEYEDYVMRMKEFERERRLLQRQK  111 (128)
T ss_pred             hhHHHHHhhHHHHHhhhcCcchHHHHHHHHHHHHHhhcccCCcchhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999888764


Q ss_pred             hhhhcCCCCcccccCCcCC
Q 034120           85 QSQTQKGAPIPLIPKTANA  103 (103)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~  103 (103)
                      ..  .|...+||||+|||+
T Consensus       112 r~--e~~Aa~~~~~~~~~~  128 (128)
T KOG3468|consen  112 RL--EKNAAVPLIPKTANA  128 (128)
T ss_pred             HH--hhcccccccCCCCCC
Confidence            44  446899999999996



>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1 Back     alignment and domain information
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00