Citrus Sinensis ID: 034131

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccccccHcccccccccccccc
Coil and Loop (DISEMBL)
MVYVTSWDEFVGRSvqlykadpqstrycmkyrhcdgklvLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMargpdvdlsevtgkeqmeaqpakkgrgrkq
Flexible Loop (DISEMBL)
mvyvtswdefvgrsvqlykadpqstrYCMKYRHCDGKLVLKVTDNKECLKFKtdqaqdakkMEKLNNIFFALMARGPDVDLSEvtgkeqmeaqpakkgrgrkq
Low Complexity Region (SEG)
MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ
Disordered region (IsUnstruct)
*VYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTD*******MEKLNNIFFALMAR****************************
Disordered Region (DISOPRED)
MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALM******************************
Disordered Region (DISEMBL)
MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTG*****************
Disordered Region (DISPRO)
*VYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARG***************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9SMU7	103	Signal recognition partic	yes	no	1.0	1.0	0.902	2e-51
O04438	103	Signal recognition partic	N/A	no	1.0	1.0	0.815	5e-46
Q55GL2	75	Signal recognition partic	yes	no	0.708	0.973	0.465	2e-16
P34642	76	Signal recognition partic	yes	no	0.679	0.921	0.471	3e-14
P49962	86	Signal recognition partic	yes	no	0.669	0.802	0.492	6e-14
P49458	86	Signal recognition partic	yes	no	0.669	0.802	0.507	6e-14
P21262	86	Signal recognition partic	yes	no	0.669	0.802	0.492	6e-14
Q4R6I6	86	Signal recognition partic	N/A	no	0.669	0.802	0.492	2e-13
Q9VSC1	77	Signal recognition partic	yes	no	0.718	0.961	0.391	6e-11

>sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQL++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.
Arabidopsis thaliana (taxid: 3702)

>sp|O04438|SRP09_MAIZE Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 94/103 (91%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVYV SW+EFV RSVQL++ DP +TRY MKYRHC+GKLVLKVTD++ECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFFALM RGPDVD+SEV+GKEQ E Q AKKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Zea mays (taxid: 4577)

>sp|Q55GL2|SRP09_DICDI Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum GN=srp9 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 54/73 (73%)

Query: 2  VYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKK 61
          +Y+  WDEF  +S QLY+ DP+ TR+  K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFALMA 74
          ++++N++FF L  
Sbjct: 61 IDQINSLFFRLTT 73

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Dictyostelium discoideum (taxid: 44689)

>sp|P34642|SRP09_CAEEL Signal recognition particle 9 kDa protein OS=Caenorhabditis elegans GN=ZK512.4 PE=3 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 1  MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
          M Y TSWDEF   + +L+ A+P+  R+  KY H  G+LVLK+TD+  CL++ T+Q QD K
Sbjct: 1  MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60

Query: 61 KMEKLNNIFF 70
          K+EKL++   
Sbjct: 61 KLEKLSSTLL 70

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Caenorhabditis elegans (taxid: 6239)

>sp|P49962|SRP09_MOUSE Signal recognition particle 9 kDa protein OS=Mus musculus GN=Srp9 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 6  SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65

Query: 66 NNIFFALMA 74
          ++    LM 
Sbjct: 66 HSQLMRLMV 74

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Mus musculus (taxid: 10090)

>sp|P49458|SRP09_HUMAN Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%)

Query: 6  SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFALMA 74
          ++    LM 
Sbjct: 66 HSQLMRLMV 74

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Homo sapiens (taxid: 9606)

>sp|P21262|SRP09_CANFA Signal recognition particle 9 kDa protein OS=Canis familiaris GN=SRP9 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 6  SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65

Query: 66 NNIFFALMA 74
          ++    LM 
Sbjct: 66 HSQLMRLMV 74

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Canis familiaris (taxid: 9615)

>sp|Q4R6I6|SRP09_MACFA Signal recognition particle 9 kDa protein OS=Macaca fascicularis GN=SRP9 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)

Query: 6  SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KT+QAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTEQAQDVKKIEKF 65

Query: 66 NNIFFALMA 74
          ++    LM 
Sbjct: 66 HSQLMRLMV 74

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding.

Macaca fascicularis (taxid: 9541)

>sp|Q9VSC1|SRP09_DROME Signal recognition particle 9 kDa protein OS=Drosophila melanogaster GN=Srp9 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 47/74 (63%)

Query: 1  MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
          MV+V +WD+F      +Y A+PQ+ R  MKY H  G ++LK+TDN +C+++K +   D +
Sbjct: 1  MVFVKNWDDFEIAVENMYLANPQNCRLTMKYAHSKGHILLKMTDNVKCVQYKAENMPDLR 60

Query: 61 KMEKLNNIFFALMA 74
          K+EK+ +     MA
Sbjct: 61 KIEKITSNLVGHMA 74

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp9 together with Srp14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of Srp9 and Srp14 is required for SRP RNA binding.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
15229083	103	signal recognition particle subunit SRP9	1.0	1.0	0.902	7e-50
297816114	103	hypothetical protein ARALYDRAFT_906164 [	1.0	1.0	0.893	1e-49
225437247	103	PREDICTED: signal recognition particle 9	1.0	1.0	0.873	4e-48
388497202	103	unknown [Lotus japonicus]	1.0	1.0	0.854	1e-47
449455276	103	PREDICTED: signal recognition particle 9	1.0	1.0	0.844	5e-47
224066299	103	predicted protein [Populus trichocarpa]	1.0	1.0	0.864	1e-46
356527312	103	PREDICTED: signal recognition particle 9	1.0	1.0	0.825	3e-46
351721950	103	uncharacterized protein LOC100500606 [Gl	1.0	1.0	0.825	3e-46
224082744	103	predicted protein [Populus trichocarpa]	1.0	1.0	0.834	6e-46
413944402	148	signal recognition particle protein [Zea	1.0	0.695	0.825	3e-45

>gi|15229083|ref|NP_190479.1| signal recognition particle subunit SRP9 [Arabidopsis thaliana] gi|12230639|sp|Q9SMU7.1|SRP09_ARATH RecName: Full=Signal recognition particle 9 kDa protein; Short=SRP9 gi|6522556|emb|CAB62000.1| signal recognition particle subunit 9-like [Arabidopsis thaliana] gi|21553473|gb|AAM62566.1| signal recognition particle 9 kDa protein SRP9 [Arabidopsis thaliana] gi|28466801|gb|AAO44009.1| At3g49100 [Arabidopsis thaliana] gi|110736135|dbj|BAF00039.1| signal recognition particle subunit 9 - like [Arabidopsis thaliana] gi|332644977|gb|AEE78498.1| signal recognition particle subunit SRP9 [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 93/103 (90%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQL++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816114|ref|XP_002875940.1| hypothetical protein ARALYDRAFT_906164 [Arabidopsis lyrata subsp. lyrata] gi|297321778|gb|EFH52199.1| hypothetical protein ARALYDRAFT_906164 [Arabidopsis lyrata subsp. lyrata]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQ+++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQIFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437247|ref|XP_002282269.1| PREDICTED: signal recognition particle 9 kDa protein [Vitis vinifera] gi|297735510|emb|CBI17950.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 96/103 (93%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQL++ADP STRY MKYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYIESWDEFVDRSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGP+VD+SEVTGKE ME QPAKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDISEVTGKEAMEVQPAKKGRGRKQ 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497202|gb|AFK36667.1| unknown [Lotus japonicus]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/103 (85%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+TSWDEFV R+VQLY+ADP STRY MKYRHCDGKLVLKVTDNK+CLK+KTDQ+Q+AK
Sbjct: 1   MVYITSWDEFVDRTVQLYRADPDSTRYVMKYRHCDGKLVLKVTDNKQCLKYKTDQSQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGP+VDLSEVTGKEQ +AQPAK+GRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDLSEVTGKEQTDAQPAKRGRGRKQ 103

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455276|ref|XP_004145379.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 1 [Cucumis sativus] gi|449455278|ref|XP_004145380.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 2 [Cucumis sativus] gi|449474209|ref|XP_004154105.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 1 [Cucumis sativus] gi|449474211|ref|XP_004154106.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 2 [Cucumis sativus] gi|449528736|ref|XP_004171359.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 1 [Cucumis sativus] gi|449528738|ref|XP_004171360.1| PREDICTED: signal recognition particle 9 kDa protein-like isoform 2 [Cucumis sativus]

 Score =  191 bits (485), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 97/103 (94%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQL+++DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFF LMARGPDVD+SEVTGK+Q++AQP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066299|ref|XP_002302071.1| predicted protein [Populus trichocarpa] gi|222843797|gb|EEE81344.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/103 (86%), Positives = 94/103 (91%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+ SWDEFV RSVQL++ADP STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK
Sbjct: 1   MVYMASWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNN FF LM+RGP+ DLSEVTGKEQ EAQP KKGRGRKQ
Sbjct: 61  KMEKLNNQFFTLMSRGPEADLSEVTGKEQTEAQPGKKGRGRKQ 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527312|ref|XP_003532255.1| PREDICTED: signal recognition particle 9 kDa protein-like [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+T WD+FV +S++L++ADP STRY MKYRHCDGKLVLKVTDN++CLK+KTDQAQ+AK
Sbjct: 1   MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNRQCLKYKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNN+FFALMARGPDVDLSEVTGKEQM+AQP KKGRGRKQ
Sbjct: 61  KMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721950|ref|NP_001236715.1| uncharacterized protein LOC100500606 [Glycine max] gi|255630742|gb|ACU15732.1| unknown [Glycine max]

 Score =  188 bits (478), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 98/103 (95%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+T WD+FV +S++L++ADP STRY MKYRHCDGKLVLKVTDN++CLK+KTDQAQ+AK
Sbjct: 1   MVYITEWDKFVEQSIELFRADPDSTRYVMKYRHCDGKLVLKVTDNQQCLKYKTDQAQEAK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNN+FFALMARGPDVDLSEVTGKEQM+AQP KKGRGRKQ
Sbjct: 61  KMEKLNNMFFALMARGPDVDLSEVTGKEQMDAQPTKKGRGRKQ 103

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082744|ref|XP_002306822.1| predicted protein [Populus trichocarpa] gi|118481739|gb|ABK92809.1| unknown [Populus trichocarpa] gi|222856271|gb|EEE93818.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVY+TSWD+FV RSVQL++ADP STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQD K
Sbjct: 1   MVYITSWDDFVDRSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDVK 60

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNN+FF LM+RGPD D+SEVTGKEQ EA+  KKGRGRKQ
Sbjct: 61  KMEKLNNLFFTLMSRGPDADVSEVTGKEQTEARAGKKGRGRKQ 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944402|gb|AFW77051.1| signal recognition particle protein [Zea mays]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 94/103 (91%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           MVYV SWDEFV RSVQL++ DP +TRY MKYRHC+GKLVLKVTD++ECLKFKTDQAQDAK
Sbjct: 46  MVYVDSWDEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 105

Query: 61  KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
           KMEKLNNIFFALM RGPDVD+SEV+GKEQ E Q AKKGRGR+Q
Sbjct: 106 KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 148

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2101288	103	AT3G49100 "AT3G49100" [Arabido	1.0	1.0	0.902	9.8e-48
ZFIN|ZDB-GENE-040426-1106	86	srp9 "signal recognition parti	0.708	0.848	0.520	4.1e-17
DICTYBASE|DDB_G0267622	75	srp9 "signal recognition parti	0.689	0.946	0.478	2.3e-16
UNIPROTKB|Q5ZHT7	86	SRP9 "Signal recognition parti	0.708	0.848	0.493	4.7e-16
WB|WBGene00013984	76	ZK512.4 [Caenorhabditis elegan	0.650	0.881	0.492	1.1e-14
UNIPROTKB|P21262	86	SRP9 "Signal recognition parti	0.708	0.848	0.479	1.4e-14
UNIPROTKB|P49458	86	SRP9 "Signal recognition parti	0.660	0.790	0.514	1.4e-14
UNIPROTKB|F1Q0Z5	86	SRP9 "Signal recognition parti	0.660	0.790	0.5	2.3e-14
UNIPROTKB|F1S8R5	86	SRP9 "Uncharacterized protein"	0.660	0.790	0.5	2.3e-14
MGI|MGI:1350930	86	Srp9 "signal recognition parti	0.660	0.790	0.5	2.3e-14

TAIR|locus:2101288 AT3G49100 "AT3G49100" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 93/103 (90%), Positives = 98/103 (95%)

Query:     1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
             MVY+ SWDEFV RSVQL++ADP+STRY MKYRHCDGKLVLKVTDNKECLKFKTDQAQ+AK
Sbjct:     1 MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query:    61 KMEKLNNIFFALMARGPDVDLSEVTGKEQMEAQPAKKGRGRKQ 103
             KMEKLNNIFF LMARGPDVDLSEVTGKEQME QPAKKGRGRKQ
Sbjct:    61 KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

GO:0005047 "signal recognition particle binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

ZFIN|ZDB-GENE-040426-1106 srp9 "signal recognition particle 9" [Danio rerio (taxid:7955)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 38/73 (52%), Positives = 49/73 (67%)

Query:     1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
             M Y  +W+EF   + +LY  DP   R  +KYRHCDG L +KVTD+  CL++KTDQAQD K
Sbjct:     1 MPYYQTWEEFARAAEKLYLTDPMKVRVVLKYRHCDGNLCMKVTDDAVCLQYKTDQAQDVK 60

Query:    61 KMEKLNNIFFALM 73
             K+EKL+     LM
Sbjct:    61 KVEKLHGKLMRLM 73

GO:0048500 "signal recognition particle" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

DICTYBASE|DDB_G0267622 srp9 "signal recognition particle 9 kDa subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 34/71 (47%), Positives = 54/71 (76%)

Query:     2 VYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKK 61
             +Y+  WDEF  +S QLY+ DP+ TR+  K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct:     1 MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query:    62 MEKLNNIFFAL 72
             ++++N++FF L
Sbjct:    61 IDQINSLFFRL 71

GO:0048500 "signal recognition particle" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5ZHT7 SRP9 "Signal recognition particle 9 kDa protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 36/73 (49%), Positives = 49/73 (67%)

Query:     1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
             M +  +W+EF   + +LY ADP   R  +KYRHCDG L +KVTD+  CL ++TDQAQD K
Sbjct:     1 MPHYQAWEEFTRAAEKLYLADPMKVRVVLKYRHCDGNLCIKVTDDVACLLYRTDQAQDVK 60

Query:    61 KMEKLNNIFFALM 73
             K+EK ++    LM
Sbjct:    61 KIEKFHSQLMRLM 73

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

WB|WBGene00013984 ZK512.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query:     1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
             M Y TSWDEF   + +L+ A+P+  R+  KY H  G+LVLK+TD+  CL++ T+Q QD K
Sbjct:     1 MTYFTSWDEFAKAAERLHSANPEKCRFVTKYNHTKGQLVLKLTDDVVCLQYSTNQLQDVK 60

Query:    61 KMEKLNN 67
             K+EKL++
Sbjct:    61 KLEKLSS 67

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|P21262 SRP9 "Signal recognition particle 9 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 35/73 (47%), Positives = 47/73 (64%)

Query:     1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
             M    +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct:     1 MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query:    61 KMEKLNNIFFALM 73
             K+EK ++    LM
Sbjct:    61 KIEKFHSQLMRLM 73

GO:0005829 "cytosol" evidence=TAS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|P49458 SRP9 "Signal recognition particle 9 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 35/68 (51%), Positives = 46/68 (67%)

Query:     6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
             +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct:     6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query:    66 NNIFFALM 73
             ++    LM
Sbjct:    66 HSQLMRLM 73

GO:0008312 "7S RNA binding" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=NAS

GO:0005047 "signal recognition particle binding" evidence=TAS

GO:0003723 "RNA binding" evidence=TAS

GO:0005785 "signal recognition particle receptor complex" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1Q0Z5 SRP9 "Signal recognition particle 9 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query:     6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
             +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct:     6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65

Query:    66 NNIFFALM 73
             ++    LM
Sbjct:    66 HSQLMRLM 73

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|F1S8R5 SRP9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query:     6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
             +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct:     6 TWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65

Query:    66 NNIFFALM 73
             ++    LM
Sbjct:    66 HSQLMRLM 73

GO:0048500 "signal recognition particle" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

MGI|MGI:1350930 Srp9 "signal recognition particle 9" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 34/68 (50%), Positives = 46/68 (67%)

Query:     6 SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
             +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct:     6 TWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF 65

Query:    66 NNIFFALM 73
             ++    LM
Sbjct:    66 HSQLMRLM 73

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0045900 "negative regulation of translational elongation" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P49458	SRP09_HUMAN	No assigned EC number	0.5072	0.6699	0.8023	yes	no
Q9SMU7	SRP09_ARATH	No assigned EC number	0.9029	1.0	1.0	yes	no
O04438	SRP09_MAIZE	No assigned EC number	0.8155	1.0	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam05486	76	pfam05486, SRP9-21, Signal recognition particle 9	2e-22

>gnl|CDD|218605 pfam05486, SRP9-21, Signal recognition particle 9 kDa protein (SRP9)

 Score = 82.3 bits (204), Expect = 2e-22
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)

Query: 4  VTSWDEFVGRSVQLYKADPQSTRYCMKYRHC---DGKLVLKVTDNK--ECLKFKTDQAQD 58
          V +WDEF+  S +L +A+P  TRY +KYRH     GKL LK TD     CLK+KT++A++
Sbjct: 1  VKTWDEFIEASEKLLEANPSKTRYSIKYRHPSASTGKLTLKTTDPHSGICLKYKTNKAKE 60

Query: 59 AKKMEKLNNIFFALMA 74
            ++          MA
Sbjct: 61 LSRLLSFLGPLGVSMA 76

This family consists of several eukaryotic SRP9 proteins. SRP9 together with the Alu-homologous region of 7SL RNA and SRP14 comprise the "Alu domain" of SRP, which mediates pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP. This family also contains the homologous fungal SRP21. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG3465	86	consensus Signal recognition particle, subunit Srp	100.0
PF05486	79	SRP9-21: Signal recognition particle 9 kDa protein	100.0
cd07268	149	Glo_EDI_BRP_like_4 This conserved domain belongs t	87.13
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	80.78

>KOG3465 consensus Signal recognition particle, subunit Srp9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.2e-40  Score=221.96  Aligned_cols=85  Identities=56%  Similarity=0.886  Sum_probs=83.1

Q ss_pred             CccccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCCCCC
Q 034131            1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVD   80 (103)
Q Consensus         1 Mvy~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p~~~   80 (103)
                      |||++||+||..||+.||.|||.+||++|||||++|.|+||+|||.+||||+||++||++|||+|++.|+++|++.|+.+
T Consensus         1 Mvy~qtwdEF~~ase~L~~A~P~~~RlvmKYrh~~g~l~lkvtd~~~CLkYkTdqaqdlkKleki~s~L~~~m~~~~~~~   80 (86)
T KOG3465|consen    1 MVYLQTWDEFFTASESLYLANPEKTRLVMKYRHSKGSLVLKVTDNVECLKYKTDQAQDLKKLEKIASKLSRLMAGKPEQE   80 (86)
T ss_pred             CceeeeHHHHHHHHHHHHhcCccceEEEEEEecCCCcEEEEeecceeeeeechhhhHHHHHHHHHHHHHHHHhccCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccccc
Q 034131           81 LSEVT   85 (103)
Q Consensus        81 l~~~~   85 (103)
                      +...+
T Consensus        81 v~~~t   85 (86)
T KOG3465|consen   81 VVAST   85 (86)
T ss_pred             eeecC
Confidence            88665

>PF05486 SRP9-21: Signal recognition particle 9 kDa protein (SRP9); InterPro: IPR008832 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=6.2e-34  Score=189.57  Aligned_cols=72  Identities=53%  Similarity=0.900  Sum_probs=64.5

Q ss_pred             cccCHHHHHHHHHHHHhhCCCcceEEEeeec-----CCCeEEEEEecCCc--eEEEeccchHHHHHHHHHHHHHHHHHh
Q 034131            3 YVTSWDEFVGRSVQLYKADPQSTRYCMKYRH-----CDGKLVLKVTDNKE--CLKFKTDQAQDAKKMEKLNNIFFALMA   74 (103)
Q Consensus         3 y~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~-----~~g~LvLKvTDd~~--cLkYkT~ka~dv~rle~l~~~l~~~Ma   74 (103)
                      |+++||||+++|++||+++|.+|||+|||+|     ++|.|+||+|||..  ||||+|++++||+||+++++.||++||
T Consensus         1 Y~~~~deF~~~s~~L~~a~P~~TR~~~kY~~~~~~~~~~~l~lK~td~~~g~clKykT~k~~dv~Rl~~~~g~l~~~ma   79 (79)
T PF05486_consen    1 YVKSWDEFIEQSEKLYEANPSTTRYSIKYRHPSKKPPTGKLVLKTTDPHSGVCLKYKTDKAKDVSRLESFLGPLGRSMA   79 (79)
T ss_dssp             -ESHHHHHHHHHHHHHHH-TTT-EEEEEBBT-----TTTBEEEEEE-SS---EEEEEE-SGGGHHHHHHHHHHHHHHH-
T ss_pred             CCCCHHHHHHHHHHHHHhCCCceEEEEEEecccccCCCceEEEEEeCCCceeEEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999999     99999999999987  999999999999999999999999997

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the 9 kDa SRP9 component. Both SRP9 and SRP14 have the same (beta)-alpha-beta(3)-alpha fold. The heterodimer has pseudo two-fold symmetry and is saddle-like, consisting of a curved six-stranded beta-sheet that has four helices packed on the convex side and an exposed concave surface lined with positively charged residues. The SRP9/SRP14 heterodimer is essential for SRP RNA binding, mediating the pausing of synthesis of ribosome associated nascent polypeptides that have been engaged by the targeting domain of SRP [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0045900 negative regulation of translational elongation, 0048500 signal recognition particle; PDB: 1E8O_A 1RY1_C.

>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=87.13  E-value=1  Score=33.58  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhCCCc--ceEEEeeecCCC------eEEEEEecCCceEEEeccchHHH
Q 034131            8 DEFVGRSVQLYKADPQS--TRYCMKYRHCDG------KLVLKVTDNKECLKFKTDQAQDA   59 (103)
Q Consensus         8 ~eF~~~s~~Ly~a~P~k--TRy~~KYr~~~g------~LvLKvTDd~~cLkYkT~ka~dv   59 (103)
                      ++..+.+..|+...+.-  .-+.+|.+.|.|      .-+|-++++.+|+||---...++
T Consensus        85 ~~~~~~~~~ll~~~~~~~~~gikvK~SsPkge~ERL~NPTvAv~~~~i~IK~HP~slk~I  144 (149)
T cd07268          85 QESIELRAPLLLKSPPLLNAGLKVKFSSPKGEGERLPNPTIAFSFGGICIKLHPHSLEEI  144 (149)
T ss_pred             chHHHHHHHhhhcccccccCCcEEEecCCCcccccCCCCcEEEEECCEEEEEcCcCHHHH
Confidence            34555666777765443  469999999988      88999999999999976665543

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=80.78  E-value=3.8  Score=25.50  Aligned_cols=35  Identities=23%  Similarity=0.465  Sum_probs=29.4

Q ss_pred             ccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEE
Q 034131            4 VTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVL   40 (103)
Q Consensus         4 ~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvL   40 (103)
                      -.||+++.......|...+  ..+.+||...+|.+|.
T Consensus        20 ~~s~~~L~~~i~~~~~~~~--~~~~l~y~D~e~d~v~   54 (81)
T cd05992          20 SISFEDLRSKIAEKFGLDA--VSFKLKYPDEDGDLVT   54 (81)
T ss_pred             CCCHHHHHHHHHHHhCCCC--CcEEEEeeCCCCCEEE
Confidence            3589999999999998765  8999999999986644

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1914_A	232	Signal Recognition Particle Alu Rna Binding Heterod		3e-15
1e8o_A	85	Core Of The Alu Domain Of The Mammalian Srp Length		5e-15

>pdb|1914|A Chain A, Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914 Length = 232

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 46/69 (66%)
Query: 6   SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
           +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK 
Sbjct: 152 TWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKF 211
Query: 66  NNIFFALMA 74
           ++    LM 
Sbjct: 212 HSQLMRLMV 220

>pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp Length = 85

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 46/69 (66%)
Query: 6  SWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 5  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 64
Query: 66 NNIFFALMA 74
          ++    LM 
Sbjct: 65 HSQLMRLMV 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
1914_A	232	Signal recognition particle 9/14 fusion protein; A	5e-33

>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C* Length = 232

 Score =  113 bits (284), Expect = 5e-33
 Identities = 35/74 (47%), Positives = 47/74 (63%)

Query: 1   MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60
           M    +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 147 MPQFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVK 206

Query: 61  KMEKLNNIFFALMA 74
           K+EK ++    LM 
Sbjct: 207 KIEKFHSQLMRLMV 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
1914_A	232	Signal recognition particle 9/14 fusion protein; A	100.0

>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*

Probab=100.00  E-value=1.5e-36  Score=234.57  Aligned_cols=80  Identities=44%  Similarity=0.749  Sum_probs=75.3

Q ss_pred             CccccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCCCCC
Q 034131            1 MVYVTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGPDVD   80 (103)
Q Consensus         1 Mvy~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p~~~   80 (103)
                      ||||+||+||+++|++||+++|.+||||+||+|++|.||||||||.+||||+|++++||+|||+||++||++|++.+++.
T Consensus       147 M~y~~sw~eF~~~s~~Ly~a~P~~tRy~~KY~~~~g~LvLKvTD~~~cLkYrT~ka~dl~rle~l~~~lm~~Ma~~~~~~  226 (232)
T 1914_A          147 MPQFQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLMRLMVAKESRN  226 (232)
T ss_dssp             ---CCSHHHHHHHHHHHHHHCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHHHHHHHHHHHHCCCCCC
T ss_pred             eeeeCCHHHHHHHHHHHHHhCCCceEEEEEEEcCCceEEEEEeeCCeEEEEECchHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1914a1	78	d.49.1.1 (A:4004-4081) Signal recognition particle	3e-36

>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14
superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14
family: Signal recognition particle alu RNA binding heterodimer, SRP9/14
domain: Signal recognition particle 9KDa protein, SRP9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (290), Expect = 3e-36
 Identities = 34/70 (48%), Positives = 46/70 (65%)

Query: 5  TSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEK 64
           +W+EF   + +LY ADP   R  +KYRH DG L +KVTD+  CL ++TDQAQD KK+EK
Sbjct: 2  QTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEK 61

Query: 65 LNNIFFALMA 74
           ++    LM 
Sbjct: 62 FHSQLMRLMV 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1914a1	78	Signal recognition particle 9KDa protein, SRP9 {Mo	100.0
d1914a2	97	Signal recognition particle 14KDa protein, SRP14 {	87.58

>d1914a1 d.49.1.1 (A:4004-4081) Signal recognition particle 9KDa protein, SRP9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14
superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14
family: Signal recognition particle alu RNA binding heterodimer, SRP9/14
domain: Signal recognition particle 9KDa protein, SRP9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-39  Score=212.27  Aligned_cols=74  Identities=46%  Similarity=0.802  Sum_probs=72.5

Q ss_pred             ccCHHHHHHHHHHHHhhCCCcceEEEeeecCCCeEEEEEecCCceEEEeccchHHHHHHHHHHHHHHHHHhCCC
Q 034131            4 VTSWDEFVGRSVQLYKADPQSTRYCMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAKKMEKLNNIFFALMARGP   77 (103)
Q Consensus         4 ~~tw~eF~~~s~~Ly~a~P~kTRy~~KYr~~~g~LvLKvTDd~~cLkYkT~ka~dv~rle~l~~~l~~~Ma~~p   77 (103)
                      |+||+||.++|+.||.++|.+||||+||+|++|.||||||||.+||||||++++|++|||+||+.||++|++..
T Consensus         1 f~sWeEF~~aa~~Ly~~~P~ktRyv~Kyrh~~g~l~LKvTDd~~clkykT~~~~dlkkiEkln~~lm~~m~ske   74 (78)
T d1914a1           1 FQTWEEFSRAAEKLYLADPMKVRVVLKYRHVDGNLCIKVTDDLVCLVYRTDQAQDVKKIEKFHSQLMRLMVAKE   74 (78)
T ss_dssp             CCSHHHHHHHHHHHHHHCTTTCEEEEEEETTTTEEEEEEECSSSEEEEEECBGGGHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCceEEEEEEEcCCCeEEEEEecCceEEEEecchHHHHHHHHHHHHHHHHHhhccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999875

>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Signal recognition particle alu RNA binding heterodimer, SRP9/14
superfamily: Signal recognition particle alu RNA binding heterodimer, SRP9/14
family: Signal recognition particle alu RNA binding heterodimer, SRP9/14
domain: Signal recognition particle 14KDa protein, SRP14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.58  E-value=2.2  Score=26.82  Aligned_cols=73  Identities=25%  Similarity=0.314  Sum_probs=50.2

Q ss_pred             CccccCHHHHHHHHHHHHhhCC--CcceEEEeeec-----------------CCCeEEEEEecCCceEEEeccc-hHHHH
Q 034131            1 MVYVTSWDEFVGRSVQLYKADP--QSTRYCMKYRH-----------------CDGKLVLKVTDNKECLKFKTDQ-AQDAK   60 (103)
Q Consensus         1 Mvy~~tw~eF~~~s~~Ly~a~P--~kTRy~~KYr~-----------------~~g~LvLKvTDd~~cLkYkT~k-a~dv~   60 (103)
                      ||.+++ ++|+.+-..||+..=  -...+|+|-..                 .+..+.+.+||...  |+.|-- +.|+.
T Consensus         1 MvlL~n-d~FL~eLt~Lf~~~~~~gSV~vT~KR~~~~~kp~~~~~~~~~~~~~e~~cLiRAt~Gkk--KiSTvV~~~~~~   77 (97)
T d1914a2           1 MVLLES-EQFLTELTRLFQKCRSSGSVFITLKKYDGRTKPIPRKSSVEGLEPAENKCLLRATDGKR--KISTVVSSKEVN   77 (97)
T ss_dssp             CCEECH-HHHHHHHHHHHHHTSSSCCEEEEEEEEC------------CCCCCCCCEEEEEEESSSC--EEEEEEETTSHH
T ss_pred             CccccH-HHHHHHHHHHHHhcccCceEEEEEEecCCCcCCCCCCCCCCCCCCCcceEEEEecCCCe--eEEEEECHHHHH
Confidence            788877 999999999999765  34778888422                 12358889999875  676664 46676


Q ss_pred             HHHHHH-HHHHHHHhCC
Q 034131           61 KMEKLN-NIFFALMARG   76 (103)
Q Consensus        61 rle~l~-~~l~~~Ma~~   76 (103)
                      +|-+-. ..+-..|.|.
T Consensus        78 ~F~~~Y~~v~Ka~M~gL   94 (97)
T d1914a2          78 KFQMAYSNLLRANMDGL   94 (97)
T ss_dssp             HHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHhhCccc
Confidence            766433 3344456554