Citrus Sinensis ID: 034136

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQVI
Secondary Structure (PSIPRED)
ccccccccccEEEEcEEEEEEccccccHHHHHHHHHHHccccccccEEEEEEEcccccccHHHHHHHHcccccccccccccccccccEEEccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHccccccEEEcccHHHHHHccccHHHHHHHHHHHcccccccccEEEEEEEcccccccHHHHHHHHHcccccccccHcccccccccEEcccccccEEEEcc
Coil and Loop (DISEMBL)
mlkeeglpagvtlgsctvleaagdgalPTLLKTLESSISQTNTNNEQVIWIHVGvnsgsskfALERRAVneatflcpdqlgwqpqqipvvledggisrsrqvi
Flexible Loop (DISEMBL)
mlkeeglpagvTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFlcpdqlgwqpqqipvvledggisrsrqvi
Low Complexity Region (SEG)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQVI
Disordered region (IsUnstruct)
*********GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLE***********
Disordered Region (DISOPRED)
*******PAGVTLGSCTVLEAAGDGALPTLLKT**************VIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGIS*S*QVI
Disordered Region (DISEMBL)
********AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQVI
Disordered Region (DISPRO)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ*I
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQVI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
363814553	217	uncharacterized protein LOC100784344 [Gl	0.980	0.465	0.647	6e-35
225425579	217	PREDICTED: pyrrolidone-carboxylate pepti	0.980	0.465	0.647	2e-34
388506610	218	unknown [Medicago truncatula]	0.980	0.463	0.627	3e-34
255568774	218	pyroglutamyl-peptidase I, putative [Rici	0.980	0.463	0.647	2e-31
242046718	220	hypothetical protein SORBIDRAFT_02g04083	0.980	0.459	0.615	2e-31
307135968	610	polygalacturonase [Cucumis melo subsp. m	0.970	0.163	0.643	2e-30
449435568	220	PREDICTED: pyrrolidone-carboxylate pepti	0.980	0.459	0.548	3e-30
115479013	216	Os09g0396300 [Oryza sativa Japonica Grou	0.980	0.467	0.605	4e-30
226504422	220	pyrrolidone carboxyl peptidase [Zea mays	0.980	0.459	0.596	5e-30
42562269	217	Peptidase C15, pyroglutamyl peptidase I-	0.980	0.465	0.568	7e-30

>gi|363814553|ref|NP_001242752.1| uncharacterized protein LOC100784344 [Glycine max] gi|255640147|gb|ACU20364.1| unknown [Glycine max]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 89/102 (87%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            ++  GLPAGVTLGSCTVL+ AGDGALP L +T+ES+IS+T++ +N  V+W+H+GVNSG+
Sbjct: 37  YVERRGLPAGVTLGSCTVLDVAGDGALPQLYQTMESAISKTDSVSNANVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
            +FA+E +A NEATF CPD+LGWQPQQ+P+VLEDGGIS++R+
Sbjct: 97  VRFAIEHQAANEATFRCPDELGWQPQQLPIVLEDGGISQTRK 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425579|ref|XP_002266223.1| PREDICTED: pyrrolidone-carboxylate peptidase [Vitis vinifera] gi|147822222|emb|CAN63940.1| hypothetical protein VITISV_032502 [Vitis vinifera] gi|297739066|emb|CBI28555.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            +++ GLP GVTLGSC VLE AGDGALP L K +ES IS  +  +NEQV+W+H+GVN G+
Sbjct: 37  FIQKRGLPNGVTLGSCIVLETAGDGALPMLYKIMESGISGADALSNEQVVWLHLGVNGGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
            KFA+ER+AVNEA+F CPD+LGWQPQQ+P+VLEDGG +++RQ
Sbjct: 97  HKFAIERQAVNEASFRCPDELGWQPQQLPIVLEDGGTTQTRQ 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506610|gb|AFK41371.1| unknown [Medicago truncatula]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 88/102 (86%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            ++++G PAGVTLGSCT+LE AGD ALP L +T+ES +S+T+T +N  ++W+H+GVNSG+
Sbjct: 37  YVEKKGFPAGVTLGSCTILEVAGDDALPQLYQTMESVVSKTDTESNANLVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           ++FA+ER A NEATF C D+LGWQPQQ+P+VLEDGGISR+R+
Sbjct: 97  ARFAIERLAANEATFRCSDELGWQPQQVPIVLEDGGISRTRE 138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568774|ref|XP_002525358.1| pyroglutamyl-peptidase I, putative [Ricinus communis] gi|223535321|gb|EEF36996.1| pyroglutamyl-peptidase I, putative [Ricinus communis]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNT-NNEQVIWIHVGVNSGS 59
            +++ GLPAGVTLGSC VLE AG+GALP L K LES+ + TN   NEQV+W+H+GVNSG+
Sbjct: 37  FVQKRGLPAGVTLGSCNVLETAGEGALPLLYKVLESNAAATNVGENEQVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
             FA+ER AVNEATF CPD+LGWQP Q P+V EDGG S +R+
Sbjct: 97  LGFAIERLAVNEATFRCPDELGWQPLQHPIVPEDGGTSCTRE 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046718|ref|XP_002461105.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor] gi|241924482|gb|EER97626.1| hypothetical protein SORBIDRAFT_02g040830 [Sorghum bicolor]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 81/104 (77%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIWIHVGVNS 57
            L++ GLP  + LGSCTVLE AG GALPTL K LES+I+   T +    QVIWIH GVNS
Sbjct: 37  FLEKRGLPKNLVLGSCTVLETAGQGALPTLYKVLESAIADRGTGSSAQGQVIWIHFGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+++FALE +AVNEATF CPD+LGW+PQ++P+V  DG ISR+R+
Sbjct: 97  GATRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGSISRTRE 140

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135968|gb|ADN33827.1| polygalacturonase [Cucumis melo subsp. melo]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSS 60
            ++E+GLPAGVTLGSCTVL+AAGDGALP L K LES IS     N +V+W+H+GVNSGS+
Sbjct: 37  FVEEKGLPAGVTLGSCTVLDAAGDGALPVLHKVLESGISNVTETN-KVVWLHLGVNSGST 95

Query: 61  KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           +FA+E +AVNEATF   D+LGWQPQ++P+V EDG IS  R+
Sbjct: 96  RFAIEWQAVNEATFRYADELGWQPQKLPIVSEDGEISMIRK 136

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435568|ref|XP_004135567.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449435570|ref|XP_004135568.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus] gi|449508620|ref|XP_004163364.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 1 [Cucumis sativus] gi|449508623|ref|XP_004163365.1| PREDICTED: pyrrolidone-carboxylate peptidase-like isoform 2 [Cucumis sativus]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/104 (54%), Positives = 85/104 (81%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTN---TNNEQVIWIHVGVNS 57
            +++ GLP G+T+GSC++LE AG GAL  L KTL+S++       TN+ ++IW+H+GVNS
Sbjct: 37  YMEKNGLPEGLTIGSCSILETAGQGALDLLHKTLQSAVEGKGSEPTNSRRIIWLHLGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+S+FA+ER+A NEATF CPD++GW+PQ++P+VLEDG +SR+R+
Sbjct: 97  GASRFAIERQAFNEATFRCPDEMGWKPQKVPIVLEDGEVSRARE 140

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115479013|ref|NP_001063100.1| Os09g0396300 [Oryza sativa Japonica Group] gi|50252601|dbj|BAD28772.1| pyrrolidone carboxyl peptidase-like protein [Oryza sativa Japonica Group] gi|113631333|dbj|BAF25014.1| Os09g0396300 [Oryza sativa Japonica Group] gi|218202109|gb|EEC84536.1| hypothetical protein OsI_31272 [Oryza sativa Indica Group] gi|222641516|gb|EEE69648.1| hypothetical protein OsJ_29259 [Oryza sativa Japonica Group]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 81/104 (77%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIWIHVGVNS 57
            ++++GLP  + LGSCTVLE AG GAL TL K LESSI++    +    QVIWIH GVNS
Sbjct: 37  FVEKKGLPKNLVLGSCTVLETAGQGALGTLYKVLESSIAERENGSSAQGQVIWIHFGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+++FALE +AVNEATF CPD+LGW+PQ+ P+V  DGGISR+R+
Sbjct: 97  GATRFALENQAVNEATFRCPDELGWKPQRAPIVPSDGGISRTRE 140

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226504422|ref|NP_001149461.1| pyrrolidone carboxyl peptidase [Zea mays] gi|195627394|gb|ACG35527.1| pyrrolidone carboxyl peptidase [Zea mays] gi|224034549|gb|ACN36350.1| unknown [Zea mays] gi|414887838|tpg|DAA63852.1| TPA: Pyrrolidone carboxyl peptidase isoform 1 [Zea mays] gi|414887839|tpg|DAA63853.1| TPA: Pyrrolidone carboxyl peptidase isoform 2 [Zea mays]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 80/104 (76%), Gaps = 3/104 (2%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNE---QVIWIHVGVNS 57
            L++ GLP  + LGSCTVLE AG+GAL TL K LES+++   T +    QVIWIH GVNS
Sbjct: 37  FLEKRGLPKNLVLGSCTVLETAGEGALATLYKVLESAVADRGTGSSAQGQVIWIHFGVNS 96

Query: 58  GSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           G+ +FALE +AVNEATF CPD+LGW+PQ++P+V  DG ISR+R+
Sbjct: 97  GAIRFALENQAVNEATFRCPDELGWKPQRVPIVPSDGSISRTRE 140

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562269|ref|NP_173758.2| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana] gi|13430708|gb|AAK25976.1|AF360266_1 unknown protein [Arabidopsis thaliana] gi|22136908|gb|AAM91798.1| unknown protein [Arabidopsis thaliana] gi|51969334|dbj|BAD43359.1| unknown protein [Arabidopsis thaliana] gi|51969520|dbj|BAD43452.1| unknown protein [Arabidopsis thaliana] gi|51970030|dbj|BAD43707.1| unknown protein [Arabidopsis thaliana] gi|51970156|dbj|BAD43770.1| unknown protein [Arabidopsis thaliana] gi|51970174|dbj|BAD43779.1| unknown protein [Arabidopsis thaliana] gi|51970494|dbj|BAD43939.1| unknown protein [Arabidopsis thaliana] gi|332192266|gb|AEE30387.1| Peptidase C15, pyroglutamyl peptidase I-like protein [Arabidopsis thaliana]

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 84/102 (82%), Gaps = 1/102 (0%)

Query: 1   MLKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIWIHVGVNSGS 59
            +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W+H+GVNSG+
Sbjct: 37  YVEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGA 96

Query: 60  SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
           +KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++
Sbjct: 97  TKFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKE 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2028906	217	AT1G23440 [Arabidopsis thalian	0.970	0.460	0.574	4.9e-30
TAIR|locus:2027615	219	AT1G56700 [Arabidopsis thalian	0.883	0.415	0.548	3.3e-24
DICTYBASE|DDB_G0267498	207	pgpep "pyroglutamyl-peptidase	0.718	0.357	0.315	1.8e-05

TAIR|locus:2028906 AT1G23440 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 58/101 (57%), Positives = 84/101 (83%)

Query:     2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSI-SQTNTNNEQVIWIHVGVNSGSS 60
             +++ GLP+G+ LGSC+VL+ AG+GA   L + LESS+ S    NN  V+W+H+GVNSG++
Sbjct:    38 VEKRGLPSGLCLGSCSVLDTAGEGAKSKLYEVLESSVVSGDKNNNGTVVWLHLGVNSGAT 97

Query:    61 KFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
             KFA+ER+AVNEA F CPD+LGWQPQ++P+V+EDGGIS++++
Sbjct:    98 KFAIERQAVNEAHFRCPDELGWQPQRLPIVVEDGGISKAKE 138

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2027615 AT1G56700 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 51/93 (54%), Positives = 72/93 (77%)

Query:    11 VTLGSCTVLEAAGDGALPTLLKTLESSIS--QTNTNNEQVIWIHVGVNSGSSKFALERRA 68
             V LGSCTVLE AG GAL +L + L+S+++  ++ +   + IW+H GVNSG++KFA+E++A
Sbjct:    47 VNLGSCTVLETAGQGALASLYQLLQSAVNTKESESLTGKTIWVHFGVNSGATKFAIEQQA 106

Query:    69 VNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQ 101
             VNEATF CPD+LGW+PQ +P+V  DG IS  R+
Sbjct:   107 VNEATFRCPDELGWKPQNLPIVPSDGPISTVRK 139

GO:0005737 "cytoplasm" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

DICTYBASE|DDB_G0267498 pgpep "pyroglutamyl-peptidase I" [Dictyostelium discoideum (taxid:44689)]

 Score = 103 (41.3 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 24/76 (31%), Positives = 43/76 (56%)

Query:    18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCP 77
             V++ +G+G +   L  +E++  +T+ ++  ++ IH GV+S  +   LER   N A F C 
Sbjct:    51 VIKVSGNG-VKDYLNQIETNYLKTSKDDIPIL-IHFGVSSSETNNRLERYGWNMADFRCD 108

Query:    78 DQLGWQPQQIPVVLED 93
             D+  W+PQ  P+   D
Sbjct:   109 DEDMWKPQNEPIDSND 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      103       103   0.00091  102 3  11 23  0.46    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  108 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.90u 0.14s 12.04t   Elapsed:  00:00:01
  Total cpu time:  11.90u 0.14s 12.04t   Elapsed:  00:00:01
  Start:  Fri May 10 15:45:22 2013   End:  Fri May 10 15:45:23 2013

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
cd00501	194	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PG	1e-11

>gnl|CDD|238279 cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 18/52 (34%), Positives = 23/52 (44%)

Query: 49  IWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSR 100
           + IHVG+  G S   +ER A+N      PD  G QP   P+V        S 
Sbjct: 63  LVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFST 114

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer. Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
COG2039	207	Pcp Pyrrolidone-carboxylate peptidase (N-terminal	99.91
PRK13194	208	pyrrolidone-carboxylate peptidase; Provisional	99.85
PRK13193	209	pyrrolidone-carboxylate peptidase; Provisional	99.85
PRK13195	222	pyrrolidone-carboxylate peptidase; Provisional	99.84
PRK13196	211	pyrrolidone-carboxylate peptidase; Provisional	99.83
PF01470	202	Peptidase_C15: Pyroglutamyl peptidase This is fami	99.82
TIGR00504	212	pyro_pdase pyroglutamyl-peptidase I. Alternate nam	99.81
PRK13197	215	pyrrolidone-carboxylate peptidase; Provisional	99.77
cd00501	194	Peptidase_C15 Pyroglutamyl peptidase (PGP) type I,	99.7
KOG4755	213	consensus Predicted pyroglutamyl peptidase [Posttr	96.96
PF06162	166	DUF976: Caenorhabditis elegans protein of unknown	96.7

>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=4.3e-25  Score=168.72  Aligned_cols=77  Identities=19%  Similarity=0.253  Sum_probs=72.6

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ..+-.|+|++..+.+.|.+.|++        .+||+||++|||+||+.||+||||||++|||||||+|+||.|+||.++|
T Consensus        36 V~~~~lP~~f~~s~~~l~~~i~~--------~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~dG  107 (207)
T COG2039          36 VKGRILPVVFKKSIDALVQAIAE--------VQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDPDG  107 (207)
T ss_pred             EEEEEcCccHHHHHHHHHHHHHh--------hCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCCCC
Confidence            45678999999999999999977        8999999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |.+-+
T Consensus       108 paAYf  112 (207)
T COG2039         108 PAAYF  112 (207)
T ss_pred             chhhh
Confidence            98644

>PRK13194 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.85  E-value=2e-21  Score=148.17  Aligned_cols=75  Identities=28%  Similarity=0.299  Sum_probs=70.7

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+++++.+.|.+++++        .+||+|||||+++||+.|++||+|+|++||++|||+|++|.++||+++|
T Consensus        36 v~~~~LPV~~~~~~~~l~~~l~~--------~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~g  107 (208)
T PRK13194         36 VFGRVLPVSFKRAREELEKVLDE--------IKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGA  107 (208)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHH--------hCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCC
Confidence            45679999999999999888877        7899999999999999999999999999999999999999999999999


Q ss_pred             Cce
Q 034136           94 GGI   96 (103)
Q Consensus        94 p~~   96 (103)
                      |..
T Consensus       108 p~~  110 (208)
T PRK13194        108 PAA  110 (208)
T ss_pred             CCc
Confidence            975

>PRK13193 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.85  E-value=2e-21  Score=148.27  Aligned_cols=80  Identities=13%  Similarity=0.068  Sum_probs=72.9

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI   89 (103)
                      +..+ ...+|+|+++.+.+.|.+++++        .+||+|||+|+++||+.|++||+|+|++|||+|||+|++|.+++|
T Consensus        33 ~~~v-~~~~LPv~~~~~~~~l~~~~~~--------~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I  103 (209)
T PRK13193         33 KEEV-KGVILPVEYEKIEDLIVTKIRE--------MKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKI  103 (209)
T ss_pred             CceE-EEEEeCCcHHHHHHHHHHHHHH--------HCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcc
Confidence            4444 4589999999999999888876        789999999999999999999999999999999999999999999


Q ss_pred             ecCCCceee
Q 034136           90 VLEDGGISR   98 (103)
Q Consensus        90 ~~~gp~~~~   98 (103)
                      +++||.+-+
T Consensus       104 ~~~gp~~~~  112 (209)
T PRK13193        104 DPLGQDGIF  112 (209)
T ss_pred             cCCCcceee
Confidence            999997644

>PRK13195 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.84  E-value=5.9e-21  Score=147.38  Aligned_cols=80  Identities=18%  Similarity=0.095  Sum_probs=71.2

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCC---CCCCCCCCcee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFL---CPDQLGWQPQQ   86 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfr---iPDn~G~qP~~   86 (103)
                      |..+. ..+|+|+++.+.+.|.+++++        .+||+|||+|||+||+.|++||+|+|++|+|   +|||+|+||.+
T Consensus        34 ~~~v~-~~~lPv~f~~~~~~l~~~i~~--------~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~  104 (222)
T PRK13195         34 GATVI-SRIVPNTFFESIAAAQQAIAE--------IEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVG  104 (222)
T ss_pred             CeEEE-EEEeCeEehHHHHHHHHHHHH--------HCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCC
Confidence            34433 368999999999999888866        7899999999999999999999999999975   99999999999


Q ss_pred             ceeecCCCceee
Q 034136           87 IPVVLEDGGISR   98 (103)
Q Consensus        87 ~pI~~~gp~~~~   98 (103)
                      +||+++||.+-+
T Consensus       105 ~~I~~~gp~ay~  116 (222)
T PRK13195        105 EPTDPAGPVAYH  116 (222)
T ss_pred             CcccCCCcceee
Confidence            999999998644

>PRK13196 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.83  E-value=1.1e-20  Score=144.04  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=71.6

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee--ec
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV--VL   91 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI--~~   91 (103)
                      ....+|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|+|||+|+|++||++|||+|++|.++||  ++
T Consensus        37 v~~~~LPV~~~~~~~~l~~~~~~--------~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~  108 (211)
T PRK13196         37 VHSALLPVEPRAAMAALSRLLDE--------LQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP  108 (211)
T ss_pred             EEEEEeCCChhHHHHHHHHHHHH--------hCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC
Confidence            55689999999999999888876        789999999999999999999999999999999999999999999  98


Q ss_pred             CCCceee
Q 034136           92 EDGGISR   98 (103)
Q Consensus        92 ~gp~~~~   98 (103)
                      +||..-+
T Consensus       109 ~gp~~y~  115 (211)
T PRK13196        109 DAPAAYL  115 (211)
T ss_pred             CCcccee
Confidence            9987654

>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification

Probab=99.82  E-value=1.6e-20  Score=141.61  Aligned_cols=81  Identities=31%  Similarity=0.423  Sum_probs=59.8

Q ss_pred             CceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceece
Q 034136            9 AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIP   88 (103)
Q Consensus         9 ~~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~p   88 (103)
                      .+..+ ...+|+|+++.|.+.+.+++++        .+||+|||+|+++||+.|+|||+|+|..|||+|||+|++|.+++
T Consensus        32 ~~~~v-~~~~lPV~~~~~~~~l~~~l~~--------~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~  102 (202)
T PF01470_consen   32 GGAEV-HTRELPVSYEKAFEALEELLEE--------HQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEP  102 (202)
T ss_dssp             TTEEE-EEEEE-SSHHHHHHHHHHHHHH--------H--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-
T ss_pred             CCceE-EEEEecCchHhHHHHHHHHHHh--------cCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCcc
Confidence            34444 5789999999999999888877        68999999999999999999999999999999999999999999


Q ss_pred             eecCCCceee
Q 034136           89 VVLEDGGISR   98 (103)
Q Consensus        89 I~~~gp~~~~   98 (103)
                      |+++||..-+
T Consensus       103 i~~~gp~~~~  112 (202)
T PF01470_consen  103 IVPDGPEAYF  112 (202)
T ss_dssp             SSTTS-SEEE
T ss_pred             ccCCCcccee
Confidence            9999998654

; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....

>TIGR00504 pyro_pdase pyroglutamyl-peptidase I

Probab=99.81  E-value=5.2e-20  Score=140.39  Aligned_cols=77  Identities=26%  Similarity=0.291  Sum_probs=71.2

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+++.+.+.|.+++++        .+||+|||||+++||+.|+|||+|+|++|+|+|||+|++|.++||+++|
T Consensus        34 i~~~~lPV~~~~~~~~l~~~l~~--------~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~g  105 (212)
T TIGR00504        34 VVAEILPNTFFEAIEALQQAIDE--------IEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDG  105 (212)
T ss_pred             EEEEEeCCChHHHHHHHHHHHHH--------HCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCC
Confidence            34577999999999999898876        7899999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |..-+
T Consensus       106 p~~~~  110 (212)
T TIGR00504       106 PAAYF  110 (212)
T ss_pred             Cceee
Confidence            97653

Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.

>PRK13197 pyrrolidone-carboxylate peptidase; Provisional

Probab=99.77  E-value=5.5e-19  Score=134.86  Aligned_cols=74  Identities=23%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ...+|+|+++.+.+.|.+++++        .+||+|||||+++||+.|+|||+|+|..|+++|||+|++|.++||+++||
T Consensus        38 ~~~~lPV~y~~~~~~l~~~l~~--------~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp  109 (215)
T PRK13197         38 IKRQLPTVFGKSAEVLKEAIEE--------VQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVEDGP  109 (215)
T ss_pred             EEEEECCChHHHHHHHHHHHHH--------hCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCCCC
Confidence            4468999999999999888866        78999999999999999999999999999999999999999999999999


Q ss_pred             ce
Q 034136           95 GI   96 (103)
Q Consensus        95 ~~   96 (103)
                      ..
T Consensus       110 ~~  111 (215)
T PRK13197        110 AA  111 (215)
T ss_pred             ce
Confidence            75

>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins

Probab=99.70  E-value=4.4e-17  Score=121.11  Aligned_cols=77  Identities=27%  Similarity=0.288  Sum_probs=70.5

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+++.+.+.+.+++++        .+|+++||||++++++.|++||+|+|..++++|||+|++|.++||.++|
T Consensus        36 i~~~~lpv~y~~~~~~~~~~~~~--------~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g  107 (194)
T cd00501          36 VVGLELPVVFQKAVEVLPELIEE--------HKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGG  107 (194)
T ss_pred             EEEEEcCccHHHHHHHHHHHHHH--------hCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCC
Confidence            34568999999999999888766        7899999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |..-.
T Consensus       108 ~~~~~  112 (194)
T cd00501         108 PAAYF  112 (194)
T ss_pred             CCeee
Confidence            97643

The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.

>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.00035  Score=54.41  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=57.7

Q ss_pred             cccCCCCCceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEe------------
Q 034136            2 LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAV------------   69 (103)
Q Consensus         2 ~~~~~~~~~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvai------------   69 (103)
                      ++++|+++.+....|+.++...+.+.+-+++            .. ...||+|..+....+++|+.|+            
T Consensus        46 ~k~~~~s~~l~~~~~~sy~~v~~~i~e~~~~------------~~-~~aIhl~sh~~knti~i~~~af~~gy~~~d~~g~  112 (213)
T KOG4755|consen   46 VKKGGVSKYLCFKMCTSYETVDEIILELWEE------------HL-QSAIHLGSHSQKNTIQIEQSAFSSGYTQKDKCGK  112 (213)
T ss_pred             HHcCCceecceecceechhhHhHHHHHhhcc------------ce-eEEEEecccccCcEEEEEEecccCCccchhhccc
Confidence            4556678888888888555444444433322            33 6778888888777788887777            


Q ss_pred             ----eccCCCCCCCCCCCceeceeecCCCc
Q 034136           70 ----NEATFLCPDQLGWQPQQIPVVLEDGG   95 (103)
Q Consensus        70 ----N~~dfriPDn~G~qP~~~pI~~~gp~   95 (103)
                          |.+.|+.||+-||++++-+++...-+
T Consensus       113 vp~~nkv~~~~~d~~~~s~i~c~~vv~~v~  142 (213)
T KOG4755|consen  113 VPEGNKVKCDGPDTGGRSCINCEIVVKDVN  142 (213)
T ss_pred             ccCCceeEeccccccccccccHHHHHHhhh
Confidence                77888999999999999888765443

>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.70  E-value=0.0034  Score=47.40  Aligned_cols=66  Identities=18%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             EEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           18 VLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        18 VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      =+++|++.+.+.+.++- +        .+|+++||||.++-...|.+|+.|+-- -+.-||-.|+.|.+-.+--++
T Consensus        62 K~~~sYe~V~ekvpel~-~--------~~~~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~~  127 (166)
T PF06162_consen   62 KMEVSYEEVDEKVPELW-K--------EQPDFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCES  127 (166)
T ss_pred             eccchHHHHHHHhHHHH-h--------hCCCeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccCc
Confidence            67888888888885544 2        469999999999999999999999853 367799999999998884443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	3e-08
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	4e-08
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	5e-08
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	5e-08
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	8e-08
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	1e-07
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	5e-05

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} PDB: 3rnz_A* 1aug_A Length = 223

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 15  SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATF 74
               +      +L  L + ++         ++  I I VG   G  +   ER A+N    
Sbjct: 39  VSEQVPTVFYKSLAVLREAMKK--------HQPDIIICVGQAGGRMQITPERVAINLNEA 90

Query: 75  LCPDQLGWQPQQIPVV 90
             PD  G QP    + 
Sbjct: 91  RIPDNEGNQPVGEDIS 106

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} Length = 215

 Score = 47.9 bits (113), Expect = 4e-08
 Identities = 19/74 (25%), Positives = 33/74 (44%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LPT  K +++ I++T  +N   + + +G   G +    ER A+N      PD   +QP  
Sbjct: 43  LPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPID 102

Query: 87  IPVVLEDGGISRSR 100
             + L+      S 
Sbjct: 103 QAIHLDGAPAYFSN 116

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A Length = 208

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 20/64 (31%), Positives = 31/64 (48%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP +    +  + +T    +  I IHVG+  G S  ++ER AVN      PD  G + + 
Sbjct: 41  LPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIED 100

Query: 87  IPVV 90
            P+V
Sbjct: 101 EPIV 104

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis} Length = 215

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
              T+G   ++       +PT+     S + +          I +G   G     +ER A
Sbjct: 28  HEKTIGEYKIISKQ----VPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITIERVA 83

Query: 69  VNEATFLCPDQLGWQPQQIPVVLEDGGISRS 99
           +N       D  G QP  +PVV E      S
Sbjct: 84  INIDDARIADNEGNQPVDVPVVEEGPAAYWS 114

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1 Length = 206

 Score = 47.1 bits (111), Expect = 8e-08
 Identities = 19/64 (29%), Positives = 30/64 (46%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP   K     + +   +    I I++G+  G +  ++ER AVN      PD  G QP+ 
Sbjct: 38  LPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKD 97

Query: 87  IPVV 90
            P+V
Sbjct: 98  EPIV 101

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1 Length = 220

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 27  LPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQ 86
           LP  +K     + +     +  I I++G+    S   +ER AVN      PD  G+QP  
Sbjct: 42  LPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPID 101

Query: 87  IPVV 90
             + 
Sbjct: 102 EKIE 105

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus} Length = 192

 Score = 39.1 bits (90), Expect = 5e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 45  NEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVV 90
                 +H+G+        LER AVN   F  PD  G   + +P+V
Sbjct: 56  EGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIV 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2ebj_A	192	Pyrrolidone carboxyl peptidase; TTHA08 degradation	99.85
4gxh_A	216	Pyrrolidone-carboxylate peptidase; structural geno	99.84
1x10_A	208	Pyrrolidone-carboxylate peptidase; stability of pr	99.84
3ro0_A	223	Pyrrolidone-carboxylate peptidase; hydrolase-hydro	99.84
1iu8_A	206	Pyrrolidone-carboxylate peptidase; hydrolase, thio	99.84
3lac_A	215	Pyrrolidone-carboxylate peptidase; alpha beta clas	99.84
3giu_A	215	Pyrrolidone-carboxylate peptidase; IDP00836, hydro	99.83
1a2z_A	220	Pyrrolidone carboxyl peptidase; N-pyroglutamate hy	99.83
4hps_A	228	Pyrrolidone-carboxylate peptidase; structural geno	99.83

>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}

Probab=99.85  E-value=1e-21  Score=146.59  Aligned_cols=79  Identities=28%  Similarity=0.335  Sum_probs=70.9

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI   89 (103)
                      +..+.. ..|+|+ +.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|++|||+|||+|++|.++||
T Consensus        31 ~~~i~~-~~lPv~-~~~~~~l~~~~~~--------~~pd~vi~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i  100 (192)
T 2ebj_A           31 GKPLRK-AVLPVD-AEALGEALEDLHR--------EGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPI  100 (192)
T ss_dssp             TEEEEE-EEECSC-HHHHHHHHHHHHT--------TCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCS
T ss_pred             CcEEEE-EEeccc-ccHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCce
Confidence            555544 459999 9999999888866        789999999999999999999999999999999999999999999


Q ss_pred             ecCCCceee
Q 034136           90 VLEDGGISR   98 (103)
Q Consensus        90 ~~~gp~~~~   98 (103)
                      +++||..-+
T Consensus       101 ~~~gp~~~~  109 (192)
T 2ebj_A          101 VPGGPLALP  109 (192)
T ss_dssp             STTSCSEEE
T ss_pred             eCCCCceeE
Confidence            999987544

>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}

Probab=99.84  E-value=2.1e-21  Score=147.26  Aligned_cols=81  Identities=25%  Similarity=0.363  Sum_probs=73.3

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI   89 (103)
                      +..+ ....|+|+++.+.+.|.++|++        .+||+|||+|+|+||+.|++||+|+|.+|||+|||+|++|.++||
T Consensus        35 ~~~i-~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~vi~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i  105 (216)
T 4gxh_A           35 GANI-EICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPV  105 (216)
T ss_dssp             TEEE-EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCS
T ss_pred             CceE-EEEecCccHHHHHHHHHHHHHh--------hCCCEEEEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcc
Confidence            3444 3567999999999999999977        789999999999999999999999999999999999999999999


Q ss_pred             ecCCCceeee
Q 034136           90 VLEDGGISRS   99 (103)
Q Consensus        90 ~~~gp~~~~~   99 (103)
                      +++||..-+.
T Consensus       106 ~~~gp~~~~t  115 (216)
T 4gxh_A          106 IVDGPAAYFS  115 (216)
T ss_dssp             STTCCSEEEC
T ss_pred             cCCCchheec
Confidence            9999987553

>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A

Probab=99.84  E-value=3.1e-21  Score=145.36  Aligned_cols=80  Identities=31%  Similarity=0.268  Sum_probs=72.3

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI   89 (103)
                      +..+. ...|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|+.|||+|||+|++|.++||
T Consensus        33 ~~~i~-~~~lPv~~~~~~~~l~~~~~~--------~~pd~vi~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i  103 (208)
T 1x10_A           33 DAQVF-GRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPI  103 (208)
T ss_dssp             TEEEE-EEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCS
T ss_pred             CeEEE-EEEEeeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCce
Confidence            44444 458999999999999888877        689999999999999999999999999999999999999999999


Q ss_pred             ecCCCceee
Q 034136           90 VLEDGGISR   98 (103)
Q Consensus        90 ~~~gp~~~~   98 (103)
                      +++||..-+
T Consensus       104 ~~~gp~~~~  112 (208)
T 1x10_A          104 VPGAPTAYF  112 (208)
T ss_dssp             STTSCSEEE
T ss_pred             eCCCCceeE
Confidence            999998643

>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A

Probab=99.84  E-value=3.3e-21  Score=147.16  Aligned_cols=76  Identities=21%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ....|+|+++.+.+.|.++|++        .+||+|||+|+|+||+.|++||+|+|.+|||+|||+|+||.++||.++||
T Consensus        39 ~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp  110 (223)
T 3ro0_A           39 VSEQVPTVFYKSLAVLREAMKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGP  110 (223)
T ss_dssp             EEEEECSCTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSC
T ss_pred             EEEEeeeEehhHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCC
Confidence            4568999999999999888877        78999999999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 034136           95 GISR   98 (103)
Q Consensus        95 ~~~~   98 (103)
                      ..-+
T Consensus       111 ~a~~  114 (223)
T 3ro0_A          111 AAYW  114 (223)
T ss_dssp             SEEE
T ss_pred             ceee
Confidence            7643

>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1

Probab=99.84  E-value=2.3e-21  Score=146.03  Aligned_cols=76  Identities=29%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ....|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|++|||+|||+|++|.++||+++||
T Consensus        34 ~~~~lPv~~~~~~~~l~~~~~~--------~~Pd~vi~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp  105 (206)
T 1iu8_A           34 VGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGP  105 (206)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC
T ss_pred             EEEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeCCCC
Confidence            3468999999999999888877        68999999999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 034136           95 GISR   98 (103)
Q Consensus        95 ~~~~   98 (103)
                      ..-+
T Consensus       106 ~~~~  109 (206)
T 1iu8_A          106 AAYF  109 (206)
T ss_dssp             SEEE
T ss_pred             ceeE
Confidence            7644

>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}

Probab=99.84  E-value=3.8e-21  Score=145.81  Aligned_cols=77  Identities=22%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      .....|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|.+|||+|||+|+||.++||.++|
T Consensus        37 i~~~~lPv~y~~~~~~l~~~~~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~G  108 (215)
T 3lac_A           37 IISKQVPTVFHKSISVLKEYIEE--------LAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEG  108 (215)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSSTTS
T ss_pred             EEEEEEeeEhHHHHHHHHHHHHh--------hCCCeEEEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcCCC
Confidence            34568999999999999888877        7899999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |..-+
T Consensus       109 p~~~~  113 (215)
T 3lac_A          109 PAAYW  113 (215)
T ss_dssp             CSEEE
T ss_pred             Cceee
Confidence            97643

>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0

Probab=99.83  E-value=4.2e-21  Score=145.66  Aligned_cols=76  Identities=22%  Similarity=0.201  Sum_probs=70.8

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ....|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|.+|||+|||+|++|.++||.++||
T Consensus        39 ~~~~lPv~~~~~~~~l~~~i~~--------~~Pd~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp  110 (215)
T 3giu_A           39 DKLKLPTSFKKVDNIINKTLAS--------NHYDVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGA  110 (215)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHH--------SCCSEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCTTSC
T ss_pred             EEEEeceehHhHHHHHHHHHHH--------hCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccCCCc
Confidence            3568999999999999888877        88999999999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 034136           95 GISR   98 (103)
Q Consensus        95 ~~~~   98 (103)
                      ..-+
T Consensus       111 ~~~~  114 (215)
T 3giu_A          111 PAYF  114 (215)
T ss_dssp             SEEE
T ss_pred             cccc
Confidence            7644

>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1

Probab=99.83  E-value=4.7e-21  Score=145.82  Aligned_cols=80  Identities=25%  Similarity=0.201  Sum_probs=72.3

Q ss_pred             ceeeeeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceecee
Q 034136           10 GVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV   89 (103)
Q Consensus        10 ~~~l~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI   89 (103)
                      +..+. ...|+|+++.+.+.|.+++++        .+||+|||+|+|+||+.|++||+|+|+.|||+|||+|++|.++||
T Consensus        34 ~~~i~-~~~lPv~~~~~~~~l~~~i~~--------~~Pd~Vi~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i  104 (220)
T 1a2z_A           34 NAMVY-GRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKI  104 (220)
T ss_dssp             TEEEE-EEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCS
T ss_pred             CeEEE-EEEEEeEHHHHHHHHHHHHHH--------hCCCEEEEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCc
Confidence            44443 458999999999999898877        689999999999999999999999999999999999999999999


Q ss_pred             ecCCCceee
Q 034136           90 VLEDGGISR   98 (103)
Q Consensus        90 ~~~gp~~~~   98 (103)
                      +++||..-+
T Consensus       105 ~~~gp~~~~  113 (220)
T 1a2z_A          105 EEDAPLAYM  113 (220)
T ss_dssp             CTTSCSEEE
T ss_pred             cCCCCceeE
Confidence            999998643

>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A

Probab=99.83  E-value=5.4e-21  Score=146.52  Aligned_cols=76  Identities=24%  Similarity=0.333  Sum_probs=70.9

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ....|+|+++.+.+.|.++|++        .+||+|||+|+|+||+.|++||+|+|++|||+|||+|++|.++||.++||
T Consensus        60 ~~~~lPv~y~~~~~~l~~~i~~--------~~Pd~VihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp  131 (228)
T 4hps_A           60 EICQIPCIFDTSLEHLYAAVDK--------YQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGP  131 (228)
T ss_dssp             EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC
T ss_pred             EEEEcceEeHHHHHHHHHHHHh--------hCCCEEEEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCC
Confidence            4568999999999999888877        78999999999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 034136           95 GISR   98 (103)
Q Consensus        95 ~~~~   98 (103)
                      ..-+
T Consensus       132 ~a~~  135 (228)
T 4hps_A          132 AAYF  135 (228)
T ss_dssp             SEEE
T ss_pred             ceee
Confidence            7644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1iofa_	208	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	1e-09
d1auga_	210	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	3e-09
d1iu8a_	206	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	3e-08
d1a2za_	220	c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyro	2e-06

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 50.8 bits (121), Expect = 1e-09
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
            G+ +G   V             + LE ++ +   +    I IHVG+  G S  ++ER A
Sbjct: 27  DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPD----IAIHVGLAPGRSAISIERIA 82

Query: 69  VNEATFLCPDQLGWQPQQIPVV 90
           VN      PD  G + +  P+V
Sbjct: 83  VNAIDARIPDNEGKKIEDEPIV 104

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 9   AGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRA 68
            G   G  +++           L  L  +I      ++  I I VG   G  +   ER A
Sbjct: 29  NGAAEGPASIVSEQVPTVFYKSLAVLREAIK----KHQPDIIICVGQAGGRMQITPERVA 84

Query: 69  VNEATFLCPDQLGWQPQQIPVVLE 92
           +N      PD  G QP    +   
Sbjct: 85  INLNEARIPDNEGNQPVGEDISQG 108

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 206

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 5   EGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFAL 64
           E L   +      +L  +   A   LLK L+             I I++G+  G +  ++
Sbjct: 24  EALSERIPEVVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISV 75

Query: 65  ERRAVNEATFLCPDQLGWQPQQIPVV 90
           ER AVN      PD  G QP+  P+V
Sbjct: 76  ERVAVNMIDARIPDNDGEQPKDEPIV 101

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 2   LKEEGLPAGVTLGSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSK 61
              + +   +  G   VL  +   A   L + LE          +  I I++G+    S 
Sbjct: 27  FDRKQIGNAMVYGR--VLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSN 76

Query: 62  FALERRAVNEATFLCPDQLGWQPQQIPVV 90
             +ER AVN      PD  G+QP    + 
Sbjct: 77  ITVERIAVNIIDARIPDNDGYQPIDEKIE 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1a2za_	220	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.81
d1iofa_	208	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.75
d1iu8a_	206	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.74
d1auga_	210	Pyrrolidone carboxyl peptidase (pyroglutamate amin	99.72

>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.81  E-value=1.9e-20  Score=140.28  Aligned_cols=77  Identities=26%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+++++.+.|.+++++        .+|++|||||+++||+.|++||+|+|+.|+++|||+|++|.++||.++|
T Consensus        37 i~~~~LPV~~~~~~~~l~~~~~~--------~~pd~vi~~G~a~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g  108 (220)
T d1a2za_          37 VYGRVLPVSVKRATIELKRYLEE--------IKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDA  108 (220)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTS
T ss_pred             EEEEEcceeHHHHHHHHHHHHHh--------CCceEEEEEeecCCCceeEEEEEEEeCCCCccccccCCccCCCCccCCC
Confidence            34689999999999999888877        7899999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |..-+
T Consensus       109 p~~~~  113 (220)
T d1a2za_         109 PLAYM  113 (220)
T ss_dssp             CSEEE
T ss_pred             Cceee
Confidence            98644

>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.75  E-value=8.5e-19  Score=129.51  Aligned_cols=76  Identities=33%  Similarity=0.284  Sum_probs=71.1

Q ss_pred             eEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCCC
Q 034136           15 SCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDG   94 (103)
Q Consensus        15 ~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~gp   94 (103)
                      ...+|||+++++.+.+.+++++        .+||++||||++++|+.|+|||+|+|..++++|||+|++|.+++|+++||
T Consensus        37 ~~~~LpV~~~~~~~~l~~l~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g~  108 (208)
T d1iofa_          37 FGRVLPVVFGKAKEVLEKTLEE--------IKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP  108 (208)
T ss_dssp             EEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSC
T ss_pred             EEEecceeHHHHHHHHHHHHHh--------CCCcEEEEEeecCCcceEEeEeEEeccCCCccCCccCCcCCCCCccCCCc
Confidence            5689999999999999888876        78999999999999999999999999999999999999999999999999


Q ss_pred             ceee
Q 034136           95 GISR   98 (103)
Q Consensus        95 ~~~~   98 (103)
                      ..-+
T Consensus       109 ~~~~  112 (208)
T d1iofa_         109 TAYF  112 (208)
T ss_dssp             SEEE
T ss_pred             ceee
Confidence            8654

>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=1.1e-18  Score=128.98  Aligned_cols=76  Identities=29%  Similarity=0.322  Sum_probs=71.1

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+++++.+.+.+.+++        .+|++|||||++++++.|+||++|+|..++++|||+|++|.+++|.++|
T Consensus        33 i~~~~LpV~~~~~~~~~~~~~~~--------~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~g  104 (206)
T d1iu8a_          33 VVGEILPVSFKRAREKLLKVLDD--------VRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGG  104 (206)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTC
T ss_pred             EEEEEeeccHHHHHHHHHHHHHh--------cCCcEEEEEEecCCccceeeEEEEEecCCCccccCCCCCCCCCcccCCC
Confidence            46789999999999999888877        7899999999999999999999999999999999999999999999999


Q ss_pred             Ccee
Q 034136           94 GGIS   97 (103)
Q Consensus        94 p~~~   97 (103)
                      |..-
T Consensus       105 ~~~~  108 (206)
T d1iu8a_         105 PAAY  108 (206)
T ss_dssp             CSEE
T ss_pred             ccce
Confidence            9764

>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
family: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
domain: Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=99.72  E-value=4.7e-18  Score=125.63  Aligned_cols=77  Identities=21%  Similarity=0.162  Sum_probs=71.5

Q ss_pred             eeEEEEeecccchHHHHHHHHHHhhcccCCCCCccEEEEeeecCCCcccceeeEEeeccCCCCCCCCCCCceeceeecCC
Q 034136           14 GSCTVLEAAGDGALPTLLKTLESSISQTNTNNEQVIWIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED   93 (103)
Q Consensus        14 ~~~~VLeVs~~~a~~~L~~~ie~~~~~~~~~~~p~~vl~lG~a~gr~~i~lErvaiN~~dfriPDn~G~qP~~~pI~~~g   93 (103)
                      ....+|+|+.+++.+.+.+++++        .+|++|||||++++++.|++||+|+|+.++++|||+|++|.+++|.++|
T Consensus        38 i~~~~lpV~~~~~~~~~~~~~~~--------~~p~~vih~G~~~~~~~i~lE~~A~N~~~~~~pDn~G~~p~~~~i~~~g  109 (210)
T d1auga_          38 IVSEQVPTVFYKSLAVLREAIKK--------HQPDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGG  109 (210)
T ss_dssp             EEEEEECSSTTHHHHHHHHHHHH--------HCCSEEEEEEECTTCSSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTS
T ss_pred             EEEEEccccHHHHHHHHHHHHHh--------CCCcEEEEEEecCCcceEEeeeEeeccCcccccccCCCCCCCCcccCCC
Confidence            35689999999999999888877        7899999999999999999999999999999999999999999999999


Q ss_pred             Cceee
Q 034136           94 GGISR   98 (103)
Q Consensus        94 p~~~~   98 (103)
                      |..-+
T Consensus       110 ~~~~~  114 (210)
T d1auga_         110 PAAYW  114 (210)
T ss_dssp             CSEEE
T ss_pred             CceeE
Confidence            97544