Citrus Sinensis ID: 034140

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEccccccEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHEEHHHHHHHccHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
mayvdhafsisdedimmetsytvnnrppiKEIVLAVSLLVFGTFGIICGTIMAYnrvggdrahGVFFAVLGAILFIPGFYYTRIAYYAYKgykgfsfnnipsv
Flexible Loop (DISEMBL)
mayvdhafsisdedimMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Low Complexity Region (SEG)
MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Disordered region (IsUnstruct)
*******FSI**EDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFN*****
Disordered Region (DISOPRED)
*AYVDHAFSISDEDIMM**SYT*NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Disordered Region (DISEMBL)
MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Disordered Region (DISPRO)
MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q8CIB6	120	Transmembrane protein 230	yes	no	0.708	0.608	0.461	1e-11
Q5ZLH4	120	Transmembrane protein 230	yes	no	0.708	0.608	0.474	1e-11
Q5BJP5	120	Transmembrane protein 230	yes	no	0.699	0.6	0.467	1e-11
Q5R8X3	120	Transmembrane protein 230	yes	no	0.708	0.608	0.448	3e-11
Q96A57	120	Transmembrane protein 230	no	no	0.708	0.608	0.448	4e-11
Q5E975	120	Transmembrane protein 230	yes	no	0.708	0.608	0.448	5e-11

>sp|Q8CIB6|TM230_MOUSE Transmembrane protein 230 OS=Mus musculus GN=Tmem230 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 53/78 (67%), Gaps = 5/78 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LA  L + GTF II G+++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIPS 102
           AYYA KGY+G+S+++IP 
Sbjct: 100 AYYASKGYRGYSYDDIPD 117

Mus musculus (taxid: 10090)

>sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230 OS=Gallus gallus GN=TMEM230 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 53/78 (67%), Gaps = 5/78 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMA---YNRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LAV L + GTF II G ++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIPS 102
           AYYA KGY+G+S+++IP 
Sbjct: 100 AYYASKGYRGYSYDDIPD 117

Gallus gallus (taxid: 9031)

>sp|Q5BJP5|TM230_RAT Transmembrane protein 230 OS=Rattus norvegicus GN=Tmem230 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 5/77 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LA  L + GTF II G+++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIP 101
           AYYA KGY+G+S+++IP
Sbjct: 100 AYYASKGYRGYSYDDIP 116

Rattus norvegicus (taxid: 10116)

>sp|Q5R8X3|TM230_PONAB Transmembrane protein 230 OS=Pongo abelii GN=TMEM230 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LA  L + G F II G+++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIPS 102
           AYYA KGY+G+S+++IP 
Sbjct: 100 AYYASKGYRGYSYDDIPD 117

Pongo abelii (taxid: 9601)

>sp|Q96A57|TM230_HUMAN Transmembrane protein 230 OS=Homo sapiens GN=TMEM230 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMAY---NRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LA  L + G F II G+++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIPS 102
           AYYA KGY+G+S+++IP 
Sbjct: 100 AYYASKGYRGYSYDDIPD 117

Homo sapiens (taxid: 9606)

>sp|Q5E975|TM230_BOVIN Transmembrane protein 230 OS=Bos taurus GN=TMEM230 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 5/78 (6%)

Query: 28  PIKEIVLAVSLLVFGTFGIICGTIMA---YNRVGGDRAHGVFFAVLGAILFIPGFYYTRI 84
           P K I LA  L + G F II G+++     ++ G DRA  V   ++G ++F+PGFY+ RI
Sbjct: 42  PYKAIALATVLFLIGAFLIIIGSLLLAGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query: 85  AYYAYKGYKGFSFNNIPS 102
           AYYA KGY+G+S+++IP 
Sbjct: 100 AYYASKGYRGYSYDDIPD 117

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
225445996	103	PREDICTED: UPF0414 transmembrane protein	1.0	1.0	0.873	8e-46
15233726	103	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.834	5e-44
357479437	102	hypothetical protein MTR_4g126790 [Medic	0.980	0.990	0.841	7e-44
89276315	103	unknown [Gymnadenia conopsea]	1.0	1.0	0.796	2e-43
224144256	103	predicted protein [Populus trichocarpa]	1.0	1.0	0.805	2e-43
297836330	103	hypothetical protein ARALYDRAFT_480536 [	1.0	1.0	0.825	4e-43
18399016	103	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.825	7e-43
449457205	103	PREDICTED: transmembrane protein 230-lik	1.0	1.0	0.815	2e-42
357449701	140	hypothetical protein MTR_2g038550 [Medic	0.980	0.721	0.821	5e-42
351724571	102	uncharacterized protein LOC100527046 [Gl	0.980	0.990	0.841	6e-42

>gi|225445996|ref|XP_002267083.1| PREDICTED: UPF0414 transmembrane protein C20orf30 homolog [Vitis vinifera] gi|147825386|emb|CAN75495.1| hypothetical protein VITISV_030526 [Vitis vinifera] gi|297735425|emb|CBI17865.3| unnamed protein product [Vitis vinifera]

 Score =  187 bits (474), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 90/103 (87%), Positives = 96/103 (93%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSISDEDIMMETSY V+NRPPIKEI LAV+LLVFGT GII G +M YNRVGGD
Sbjct: 1   MAYVDHAFSISDEDIMMETSYIVHNRPPIKEIALAVALLVFGTLGIILGILMVYNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           RAHG+FFA+LGAILFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct: 61  RAHGLFFAILGAILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233726|ref|NP_194714.1| uncharacterized protein [Arabidopsis thaliana] gi|4914409|emb|CAB43660.1| putative protein [Arabidopsis thaliana] gi|7269884|emb|CAB79743.1| putative protein [Arabidopsis thaliana] gi|88900368|gb|ABD57496.1| At4g29850 [Arabidopsis thaliana] gi|332660285|gb|AEE85685.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSI+DEDIM+ETSYTVNNRPP+KEI LAV+LLVFGT GI+ G  MAYNRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           R HG+FF VLG +LFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479437|ref|XP_003610004.1| hypothetical protein MTR_4g126790 [Medicago truncatula] gi|355511059|gb|AES92201.1| hypothetical protein MTR_4g126790 [Medicago truncatula] gi|388503578|gb|AFK39855.1| unknown [Medicago truncatula]

 Score =  180 bits (457), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 94/101 (93%)

Query: 3   YVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRA 62
           YVDHAFSISDED+MMETSYT NN+PPIKEI LAV+LLVFGT GII G++MAYN VGGD A
Sbjct: 2   YVDHAFSISDEDMMMETSYTANNKPPIKEIALAVALLVFGTLGIIIGSLMAYNHVGGDTA 61

Query: 63  HGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           HG+FFA+LG+ILFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct: 62  HGLFFAILGSILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 102

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89276315|gb|ABD66514.1| unknown [Gymnadenia conopsea]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 93/103 (90%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSISDEDIMME+SY V+NRPP+KEI LAV+LLVFG  GI+ G +M YNR GGD
Sbjct: 1   MAYVDHAFSISDEDIMMESSYVVHNRPPVKEIALAVALLVFGVLGIVLGIVMTYNRAGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           RAHG+FFA+LGA+LF+PGFYYTRIAYYAYKGY GFSF NIP+V
Sbjct: 61  RAHGIFFAILGAVLFLPGFYYTRIAYYAYKGYTGFSFANIPAV 103

Source: Gymnadenia conopsea

Species: Gymnadenia conopsea

Genus: Gymnadenia

Family: Orchidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144256|ref|XP_002325237.1| predicted protein [Populus trichocarpa] gi|222866671|gb|EEF03802.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 94/103 (91%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSI+DED+M+ETSYTVNN+PPIKEI LAV+LLVFG  GI+ GT M YNRVGGD
Sbjct: 1   MAYVDHAFSITDEDLMVETSYTVNNKPPIKEIALAVALLVFGVVGIVLGTFMTYNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           R HG+FFA+LG +LFIPGFYYTRIAY+AYKGYKGFSF+NIP V
Sbjct: 61  RGHGLFFAILGVVLFIPGFYYTRIAYFAYKGYKGFSFSNIPPV 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836330|ref|XP_002886047.1| hypothetical protein ARALYDRAFT_480536 [Arabidopsis lyrata subsp. lyrata] gi|297331887|gb|EFH62306.1| hypothetical protein ARALYDRAFT_480536 [Arabidopsis lyrata subsp. lyrata]

 Score =  178 bits (451), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 94/103 (91%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSISDED+M+ TSYTV+NRPP+KEI LAV+LLVFGT GI+ G  MAYNRVGGD
Sbjct: 1   MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           R HG+FF VLG +LFIPGFYYTRIAYYAYKGYKGFSF+NIPSV
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399016|ref|NP_565449.1| uncharacterized protein [Arabidopsis thaliana] gi|3135265|gb|AAC16465.1| expressed protein [Arabidopsis thaliana] gi|21593287|gb|AAM65236.1| unknown [Arabidopsis thaliana] gi|28393155|gb|AAO42010.1| unknown protein [Arabidopsis thaliana] gi|28827522|gb|AAO50605.1| unknown protein [Arabidopsis thaliana] gi|330251778|gb|AEC06872.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/103 (82%), Positives = 93/103 (90%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSISDED+M+ TSYTV+NRPP+KEI LAV LLVFGT GI+ G  MAYNRVGGD
Sbjct: 1   MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           R HG+FF VLG +LFIPGFYYTRIAYYAYKGYKGFSF+NIPSV
Sbjct: 61  RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457205|ref|XP_004146339.1| PREDICTED: transmembrane protein 230-like [Cucumis sativus] gi|449502986|ref|XP_004161798.1| PREDICTED: transmembrane protein 230-like [Cucumis sativus]

 Score =  176 bits (445), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/103 (81%), Positives = 92/103 (89%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSI+DEDIMM++ +TVNNRPPIKEI LAVSLLVFG  GII G  MA NRVGGD
Sbjct: 1   MAYVDHAFSITDEDIMMDSPFTVNNRPPIKEIALAVSLLVFGMIGIIVGAFMASNRVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           R HGVFF++LG +LFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct: 61  RVHGVFFSLLGGLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449701|ref|XP_003595127.1| hypothetical protein MTR_2g038550 [Medicago truncatula] gi|355484175|gb|AES65378.1| hypothetical protein MTR_2g038550 [Medicago truncatula]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/101 (82%), Positives = 92/101 (91%)

Query: 1   MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
           MAYVDHAFSISDEDIM+ TSYTVNN+PP+KEI LAVSLLVFG   II G++MAYN VGGD
Sbjct: 1   MAYVDHAFSISDEDIMIGTSYTVNNKPPVKEIALAVSLLVFGFLSIIIGSLMAYNHVGGD 60

Query: 61  RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101
            AHG+FFA+LG +LFIPGFYYTRIAYYAYKGYKGFSF+NIP
Sbjct: 61  TAHGLFFAILGMLLFIPGFYYTRIAYYAYKGYKGFSFSNIP 101

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724571|ref|NP_001237830.1| uncharacterized protein LOC100527046 [Glycine max] gi|255631438|gb|ACU16086.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/101 (84%), Positives = 91/101 (90%)

Query: 3   YVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRA 62
           YVDHAFSISDEDIMM TSYTVNN+PPIKEI LAVSLLV G  GI+ G++MAYN VGGD A
Sbjct: 2   YVDHAFSISDEDIMMGTSYTVNNKPPIKEIALAVSLLVCGVLGIVIGSLMAYNHVGGDTA 61

Query: 63  HGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           HG+FFAVLG ILFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct: 62  HGIFFAVLGFILFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2123949	103	AT4G29850 "AT4G29850" [Arabido	1.0	1.0	0.834	1.2e-44
TAIR|locus:2047625	103	AT2G19350 "AT2G19350" [Arabido	1.0	1.0	0.825	1e-43
UNIPROTKB|Q5ZLH4	120	TMEM230 "Transmembrane protein	0.699	0.6	0.506	4.9e-14
MGI|MGI:1917862	120	Tmem230 "transmembrane protein	0.699	0.6	0.493	1e-13
RGD|1307399	120	Tmem230 "transmembrane protein	0.699	0.6	0.493	1e-13
UNIPROTKB|Q5E975	120	TMEM230 "Transmembrane protein	0.699	0.6	0.480	3.4e-13
UNIPROTKB|Q96A57	120	TMEM230 "Transmembrane protein	0.699	0.6	0.480	3.4e-13
ZFIN|ZDB-GENE-070820-4	121	zgc:162251 "zgc:162251" [Danio	0.883	0.752	0.372	5.6e-13
TAIR|locus:2094677	121	AT3G29170 "AT3G29170" [Arabido	0.883	0.752	0.395	5e-12
ZFIN|ZDB-GENE-040822-20	120	zgc:101123 "zgc:101123" [Danio	0.699	0.6	0.441	2.8e-11

TAIR|locus:2123949 AT4G29850 "AT4G29850" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 86/103 (83%), Positives = 94/103 (91%)

Query:     1 MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
             MAYVDHAFSI+DEDIM+ETSYTVNNRPP+KEI LAV+LLVFGT GI+ G  MAYNRVGGD
Sbjct:     1 MAYVDHAFSITDEDIMIETSYTVNNRPPVKEIALAVALLVFGTLGIVSGFFMAYNRVGGD 60

Query:    61 RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
             R HG+FF VLG +LFIPGFYYTRIAYYAYKGYKGFSF+NIP V
Sbjct:    61 RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPPV 103

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047625 AT2G19350 "AT2G19350" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 85/103 (82%), Positives = 93/103 (90%)

Query:     1 MAYVDHAFSISDEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGD 60
             MAYVDHAFSISDED+M+ TSYTV+NRPP+KEI LAV LLVFGT GI+ G  MAYNRVGGD
Sbjct:     1 MAYVDHAFSISDEDLMIGTSYTVSNRPPVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGD 60

Query:    61 RAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
             R HG+FF VLG +LFIPGFYYTRIAYYAYKGYKGFSF+NIPSV
Sbjct:    61 RGHGIFFIVLGCLLFIPGFYYTRIAYYAYKGYKGFSFSNIPSV 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

UNIPROTKB|Q5ZLH4 TMEM230 "Transmembrane protein 230" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGG-DRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LAV L + GTF II G ++   Y   GG DRA  V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1917862 Tmem230 "transmembrane protein 230" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGG-DRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LA  L + GTF II G+++   Y   GG DRA  V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1307399 Tmem230 "transmembrane protein 230" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 38/77 (49%), Positives = 53/77 (68%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGG-DRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LA  L + GTF II G+++   Y   GG DRA  V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5E975 TMEM230 "Transmembrane protein 230" [Bos taurus (taxid:9913)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGG-DRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LA  L + G F II G+++   Y   GG DRA  V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALATVLFLIGAFLIIIGSLLLAGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q96A57 TMEM230 "Transmembrane protein 230" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 37/77 (48%), Positives = 52/77 (67%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGG-DRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LA  L + G F II G+++   Y   GG DRA  V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070820-4 zgc:162251 "zgc:162251" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/94 (37%), Positives = 58/94 (61%)

Query:    11 SDEDIMMETSYTVNN-RPPIKEIVLAVSLLVFGTFGIICGTIM--AYNRVGGDRAHGVFF 67
             SD+D  ++  +  +  + P K I LA  L + G+  II G+++   Y  V   R   +  
Sbjct:    24 SDDDGYIDLQFKRSPPKVPYKAIALATGLFLIGSILIIIGSLLLAGYFEVNDHRDRTIPV 83

Query:    68 AVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 101
              ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:    84 LIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 117

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094677 AT3G29170 "AT3G29170" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 36/91 (39%), Positives = 50/91 (54%)

Query:    12 DEDIMMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLG 71
             D D   + S    +R P K I LAV LL  G   ++    +    + GD + G    VLG
Sbjct:    30 DFDPRFDYSPKAFDRVPWKSIALAVFLLFLGCLLLLLSFFIFIGHMEGDSSQGYALLVLG 89

Query:    72 AILFIPGFYYTRIAYYAYKGYKGFSFNNIPS 102
              + F+PGFY TRIAYY+++G +G+ F  IPS
Sbjct:    90 ILTFLPGFYETRIAYYSWRGAEGYRFAAIPS 120

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040822-20 zgc:101123 "zgc:101123" [Danio rerio (taxid:7955)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 34/77 (44%), Positives = 50/77 (64%)

Query:    28 PIKEIVLAVSLLVFGTFGIICGTIM--AYNRVG-GDRAHGVFFAVLGAILFIPGFYYTRI 84
             P K I LA  L + G+  II G+++   Y  V   DR   V   ++G ++F+PGFY+ RI
Sbjct:    42 PYKAIALATFLFLVGSLLIIVGSLLLAGYIEVTYPDRTIPVL--IIGILIFLPGFYHLRI 99

Query:    85 AYYAYKGYKGFSFNNIP 101
             AYYA KGY+G+S+++IP
Sbjct:   100 AYYASKGYRGYSYDDIP 116

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam05915	108	pfam05915, DUF872, Eukaryotic protein of unknown f	4e-31

>gnl|CDD|218809 pfam05915, DUF872, Eukaryotic protein of unknown function (DUF872)

 Score =  105 bits (264), Expect = 4e-31
 Identities = 44/107 (41%), Positives = 56/107 (52%), Gaps = 9/107 (8%)

Query: 6   HAFSISDEDI---------MMETSYTVNNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNR 56
            A S  DED             TS     + P K I LA  LL+ G   ++ G  +    
Sbjct: 2   QALSNEDEDDSQASPDTDDSFTTSPPSEQKSPWKVIALAFLLLLLGALLLVIGVFIFTGP 61

Query: 57  VGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPSV 103
           + GD +    F VLG +LFIPGFY+ R AYYAYKGY+GFSF+N+P  
Sbjct: 62  MEGDGSQAYVFFVLGILLFIPGFYHVRYAYYAYKGYRGFSFDNLPLF 108

This family consists of several uncharacterized eukaryotic proteins. The function of this family is unknown. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG4753	124	consensus Predicted membrane protein [Function unk	100.0
PF05915	115	DUF872: Eukaryotic protein of unknown function (DU	100.0
PF11239	82	DUF3040: Protein of unknown function (DUF3040); In	93.02
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	89.92
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.14
PF04713	77	Pox_I5: Poxvirus protein I5; InterPro: IPR006803 T	88.75
PF11381	59	DUF3185: Protein of unknown function (DUF3185); In	88.29
PRK10591	92	hypothetical protein; Provisional	86.59
PF14927	140	Neurensin: Neurensin	85.65
PF14145	59	YrhK: YrhK-like protein	83.63
PF07214	96	DUF1418: Protein of unknown function (DUF1418); In	82.85
PHA02974	81	putative IMV membrane protein; Provisional	80.76

>KOG4753 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=9.1e-39  Score=227.16  Aligned_cols=103  Identities=69%  Similarity=1.106  Sum_probs=100.0

Q ss_pred             CceecccccccCCCccccccccc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccchhHHHHHHHHHhccc
Q 034140            1 MAYVDHAFSISDEDIMMETSYTV-NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVG-GDRAHGVFFAVLGAILFIPG   78 (103)
Q Consensus         1 ~~y~~~~~s~s~dd~~~~~q~~~-~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~-~d~~~~~~~lilG~l~fIPG   78 (103)
                      |+|.||++|.+|.|..+|.|++. |+++|||+|++|++|+++|+.++.+|.+++.++++ +|++|+++|+++|+||||||
T Consensus        19 ~~y~~~~~s~~Dsd~~~~~~~~~s~tr~P~k~i~lavvL~~fg~Lli~lg~fl~~~~~~ag~~~~gv~f~V~G~L~FiPG   98 (124)
T KOG4753|consen   19 MAYSDHAFSISDSDIQIDYSYKVSNTRHPVKEIALAVVLLVFGLLLIGLGFFLAGGRVEAGDRSQGVFFFVLGILLFIPG   98 (124)
T ss_pred             hhhcccccccccccceeecccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHheecceeeCCCcceEEEehhhhHhcccc
Confidence            78999999999999999999998 77999999999999999999999999999999998 89999999999999999999


Q ss_pred             hHHHHHHHHHHcCCCCcccccCCCC
Q 034140           79 FYYTRIAYYAYKGYKGFSFNNIPSV  103 (103)
Q Consensus        79 ~Yh~~iay~a~~G~~Gysf~~IP~~  103 (103)
                      +||+|+|||||||+|||||++||+.
T Consensus        99 fYh~riayyA~KGyrGf~F~~iP~f  123 (124)
T KOG4753|consen   99 FYHTRIAYYAYKGYRGFSFSNIPSF  123 (124)
T ss_pred             hheEeeEEEeeccccccccccCCCC
Confidence            9999999999999999999999974

>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins

Probab=100.00  E-value=4.2e-34  Score=201.56  Aligned_cols=77  Identities=53%  Similarity=1.005  Sum_probs=74.3

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchHHHHHHHHHHcCCCCcccccCCC
Q 034140           26 RPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIPS  102 (103)
Q Consensus        26 kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G~~Gysf~~IP~  102 (103)
                      |+|||+|++|++||++|++|+++|+++++++++++++|+++++|+|+||||||+||+|++||||||+|||||+|||+
T Consensus        38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~Gysf~~IP~  114 (115)
T PF05915_consen   38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKGYSFDDIPD  114 (115)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCCCCHhhCCC
Confidence            44599999999999999999999999999999989999999999999999999999999999999999999999997

The function of this currently unknown.

>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed

Probab=93.02  E-value=0.32  Score=31.84  Aligned_cols=60  Identities=22%  Similarity=0.366  Sum_probs=39.8

Q ss_pred             cCCCccccccccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchH
Q 034140           11 SDEDIMMETSYTV--NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFY   80 (103)
Q Consensus        11 s~dd~~~~~q~~~--~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Y   80 (103)
                      .+||.-...+...  +++...|..+++..++++|.++++.|.....          .++.++|+++-.-|.+
T Consensus        19 ~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~~----------~~~~v~G~~v~~~~~~   80 (82)
T PF11239_consen   19 RADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLSQ----------PPLGVAGFVVMVAGAV   80 (82)
T ss_pred             HhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHH
Confidence            3455544556554  4455556678899999999999999996532          2366777666555543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=89.92  E-value=1  Score=36.74  Aligned_cols=71  Identities=14%  Similarity=0.059  Sum_probs=47.2

Q ss_pred             eecccccccCCCccccccccc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccchH
Q 034140            3 YVDHAFSISDEDIMMETSYTV--NNRPPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPGFY   80 (103)
Q Consensus         3 y~~~~~s~s~dd~~~~~q~~~--~~kiPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG~Y   80 (103)
                      |-|+.=+..+++.....|-..  +++.+.|.+....+.++.|..++.+.+...         +.+.++.+|.+|+.-|.-
T Consensus        66 Y~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~---------s~~~~l~lG~l~~~~g~~  136 (303)
T COG1575          66 YFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAAL---------SDWLVLLLGLLCIAAGIL  136 (303)
T ss_pred             hhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHheee
Confidence            445544444433434445443  888999998888888888888777665432         225589999999887765


Q ss_pred             HH
Q 034140           81 YT   82 (103)
Q Consensus        81 h~   82 (103)
                      ||
T Consensus       137 YT  138 (303)
T COG1575         137 YT  138 (303)
T ss_pred             ec
Confidence            54

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.14  E-value=0.88  Score=33.12  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccchhHHHHHHHHHhccchHHH
Q 034140           30 KEIVLAVSLLVFGTFGIICGTIMAYNRVGG-----DRAHGVFFAVLGAILFIPGFYYT   82 (103)
Q Consensus        30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~-----d~~~~~~~lilG~l~fIPG~Yh~   82 (103)
                      +..+++++++++|+++++.|...+.-...+     ...=+..++.+|+++|.=|.+..
T Consensus         3 ~~~i~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~   60 (191)
T PF04156_consen    3 KQRIISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVLLSLGLLCL   60 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666666666655555543322110     01112456667888887777654

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5

Probab=88.75  E-value=3.1  Score=27.88  Aligned_cols=60  Identities=25%  Similarity=0.480  Sum_probs=44.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-----cch---h--HHHHHHHHHhccchHHHHHHH
Q 034140           27 PPIKEIVLAVSLLVFGTFGIICGTIMAYNRVGGDR-----AHG---V--FFAVLGAILFIPGFYYTRIAY   86 (103)
Q Consensus        27 iPwK~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~-----~~~---~--~~lilG~l~fIPG~Yh~~iay   86 (103)
                      .++|++.-++.+.+.=.++++.|..+.+-...+.+     |..   +  .+=.++.+.||||.=-++-+|
T Consensus         2 ~~~kev~s~IgiTlL~llMvisG~ali~k~~ap~~~v~~rS~~~~rVl~~le~vailifIPGTIiLY~aY   71 (77)
T PF04713_consen    2 LSAKEVFSAIGITLLMLLMVISGGALIFKRIAPHRSVMMRSATFNRVLTFLEYVAILIFIPGTIILYSAY   71 (77)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhChHHHhhccCCcceehhhhhhhHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence            46899999999999999999999988876655421     211   1  445789999999975554444

>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed

Probab=88.29  E-value=0.37  Score=30.63  Aligned_cols=47  Identities=21%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--------cCCCccchhHHHHHHHHHhccchH
Q 034140           34 LAVSLLVFGTFGIICGTIMAYNR--------VGGDRAHGVFFAVLGAILFIPGFY   80 (103)
Q Consensus        34 lA~~L~~~G~~ll~~g~l~~~~~--------~~~d~~~~~~~lilG~l~fIPG~Y   80 (103)
                      +++.|++.|.+|+..|.-..-..        .+....+.+.+++.|..+++-|.+
T Consensus         3 igi~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~~t~~~ligG~va~ivGl~   57 (59)
T PF11381_consen    3 IGIALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTDKTIWYLIGGAVAVIVGLF   57 (59)
T ss_pred             eeehHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCchhHHHHHhHHHHHHHHHh
Confidence            46789999999999998543221        122345568999999999988764

Currently no function is known.

>PRK10591 hypothetical protein; Provisional

Probab=86.59  E-value=2.7  Score=29.05  Aligned_cols=54  Identities=19%  Similarity=0.370  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccC-----CCccchhHHHHHHHHHhccchHHHHHHHHHHcC
Q 034140           36 VSLLVFGTFGIICGTIMAYNRVG-----GDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKG   91 (103)
Q Consensus        36 ~~L~~~G~~ll~~g~l~~~~~~~-----~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G   91 (103)
                      +.|=++|.+|++...+-...+..     +...-.+.++++|+.|.+|-.-  .+.|.+.+|
T Consensus        12 lilE~lGi~LLv~a~Lsindyl~lP~~l~~~~aai~mif~Gi~lmiPAav--~ivWR~a~~   70 (92)
T PRK10591         12 LILEVLGMLLLVVAYLSLNDYLSLPEPLSTPTAAILMIFLGVLLMLPAAV--VIIWRVAKG   70 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccCCccccCchHHHHHHHHHHHHhhHHHH--HHHHHHHHH
Confidence            34667899999999887665433     2223346899999999999764  455555544

>PF14927 Neurensin: Neurensin

Probab=85.65  E-value=1.4  Score=32.40  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=19.8

Q ss_pred             CChH-HHHHHHHHHHHHHHHHHHHHHH
Q 034140           27 PPIK-EIVLAVSLLVFGTFGIICGTIM   52 (103)
Q Consensus        27 iPwK-~I~lA~~L~~~G~~ll~~g~l~   52 (103)
                      .=|| ...+++.+++.|++++++|.++
T Consensus        42 ~~wkV~~i~g~l~Ll~Gi~~l~vgY~v   68 (140)
T PF14927_consen   42 VCWKVGFISGLLLLLLGIVALTVGYLV   68 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            3344 4778888889999999998864

>PF14145 YrhK: YrhK-like protein

Probab=83.63  E-value=3.1  Score=26.06  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhccc
Q 034140           34 LAVSLLVFGTFGIICGTIMAYNRVGGDRAHGVFFAVLGAILFIPG   78 (103)
Q Consensus        34 lA~~L~~~G~~ll~~g~l~~~~~~~~d~~~~~~~lilG~l~fIPG   78 (103)
                      +..+.-++|.++.++|+.++.-+  ....-+..++++|++.|.=+
T Consensus         7 ~~~~~d~~~~~~FliGSilfl~~--~~~~~g~wlFiiGS~~f~i~   49 (59)
T PF14145_consen    7 ISTVNDFIGGLLFLIGSILFLPE--SLYTAGTWLFIIGSILFLIR   49 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHH
Confidence            34466677888888888877653  22344578888999887643

>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length

Probab=82.85  E-value=5.2  Score=27.80  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhccC-----CCccchhHHHHHHHHHhccchHHHHHHHHHHcC
Q 034140           37 SLLVFGTFGIICGTIMAYNRVG-----GDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKG   91 (103)
Q Consensus        37 ~L~~~G~~ll~~g~l~~~~~~~-----~d~~~~~~~lilG~l~fIPG~Yh~~iay~a~~G   91 (103)
                      .|=++|.+|++++.+-...+..     +...-++.++++|+.|.+|-.-  .+.|.+.+|
T Consensus        13 ilE~lG~~LLv~a~Lsin~~l~LP~~l~~~~aai~MIf~Gi~lMlPAav--~ivWR~a~~   70 (96)
T PF07214_consen   13 ILEVLGMILLVLAYLSINDYLSLPAPLSTPTAAIAMIFVGIGLMLPAAV--NIVWRVAKG   70 (96)
T ss_pred             HHHHHHHHHHHHHHHHHcccccCcccccCchHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            4567899999999987655433     1223347999999999999763  445555543

Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.

>PHA02974 putative IMV membrane protein; Provisional

Probab=80.76  E-value=7.9  Score=26.20  Aligned_cols=57  Identities=23%  Similarity=0.466  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc------c---ch-h-HHHHHHHHHhccchHHHHHHH
Q 034140           30 KEIVLAVSLLVFGTFGIICGTIMAYNRVGGDR------A---HG-V-FFAVLGAILFIPGFYYTRIAY   86 (103)
Q Consensus        30 K~I~lA~~L~~~G~~ll~~g~l~~~~~~~~d~------~---~~-~-~~lilG~l~fIPG~Yh~~iay   86 (103)
                      |+...++.+.+.=.++++.|..+.+-...+.+      +   .+ . .+=.++++.|+||.=.++-+|
T Consensus         5 ~e~~~~IgiTlL~llMiisG~aLi~k~~~P~~~~v~~ss~tf~rvv~~lE~vailifiPGti~LYsAY   72 (81)
T PHA02974          5 RETLIFIGITILVVLLIISGFSLILRLIPGVYSSVIRSSFTAGKILRFMEIFSTIMFIPGIIILYAAY   72 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHhhcCchhhhhhhHHHHHHHHHHHHHHHHHhheeccHHHHHHHH
Confidence            44444577777777778888777765544331      1   11 1 455789999999976665555

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00