Citrus Sinensis ID: 034147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEcccccccccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccHHHHHHEEHHHcc
Coil and Loop (DISEMBL)
MGDLEKVKNEALEIIGqfenlprlvvfdldytlwpfyceccyedeipylypHAKGILEALKEKGIHVAvasrspapdiAKTFLHKLGIHSMFVPMVRLSCCIM
Flexible Loop (DISEMBL)
MGDLEKVKNEALEIigqfenlprlVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Low Complexity Region (SEG)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Disordered region (IsUnstruct)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI*
Disordered Region (DISOPRED)
**********ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Disordered Region (DISEMBL)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Disordered Region (DISPRO)
**DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9D967	164	Magnesium-dependent phosp	yes	no	0.718	0.451	0.314	4e-05
Q86V88	176	Magnesium-dependent phosp	yes	no	0.718	0.420	0.314	5e-05
O94279	172	Putative magnesium-depend	yes	no	0.650	0.389	0.337	8e-05
P40081	178	Putative magnesium-depend	yes	no	0.747	0.432	0.292	0.0002

>sp|Q9D967|MGDP1_MOUSE Magnesium-dependent phosphatase 1 OS=Mus musculus GN=Mdp1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          + VA ASR+     A   L    +   F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q86V88|MGDP1_HUMAN Magnesium-dependent phosphatase 1 OS=Homo sapiens GN=MDP1 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)

Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 62

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          +  A ASR+   + A   L    +   FV
Sbjct: 63 VPGAAASRTSEIEGANQLLELFDLFRYFV 91

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|O94279|MGDP1_SCHPO Putative magnesium-dependent phosphatase P8B7.31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.31 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 19/86 (22%)

Query: 21 LPRLVVFDLDYTLWPFYCEC------------------CYEDEIPYLYPHAKGILEALKE 62
           P+ VVFDLDYTLWP + +                    Y  EI + Y    GIL+ L+ 
Sbjct: 7  FPKCVVFDLDYTLWPLWIDTHVTAPFKPSKNDPGVLIDKYGTEICF-YSDITGILQELRN 65

Query: 63 KGIHVAVASRSPAPDIAKTFLHKLGI 88
          + + + VASR+ AP  AK  L+ + +
Sbjct: 66 QKVTLCVASRTCAPKYAKQALNLMKV 91

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P40081|MGDP1_YEAST Putative magnesium-dependent phosphatase YER134C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YER134C PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 22/99 (22%)

Query: 22  PRLVVFDLDYTLWPFYCEC--------------------CYEDEIPYLYPHAKGILEALK 61
           P +  FDLDYT+WP YC+                     C +     +Y     IL  LK
Sbjct: 5   PDVAAFDLDYTIWPCYCDTHLHGPFKPVKSSNGEVLTIICRDGYELTIYKDIPRILGDLK 64

Query: 62  EKGIHVAVASRSPAPDIAKTFLH--KLGIHSMFVPMVRL 98
           + G+ +  ASR+ AP+IA+  L   K+    +  P+  L
Sbjct: 65  DNGVKLMTASRTWAPEIAQEILKIFKVKYAGVVTPLANL 103

Magnesium-dependent phosphatase which may act as a tyrosine phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
255563310	189	Magnesium-dependent phosphatase, putativ	0.893	0.486	0.752	4e-34
225465793	165	PREDICTED: magnesium-dependent phosphata	0.854	0.533	0.761	2e-31
4587681	151	hypothetical protein [Arabidopsis thalia	0.893	0.609	0.695	4e-31
222625757	327	hypothetical protein OsJ_12493 [Oryza sa	0.893	0.281	0.709	8e-31
115455203	173	Os03g0737400 [Oryza sativa Japonica Grou	0.893	0.531	0.709	1e-30
79555268	190	haloacid dehalogenase-like hydrolase dom	0.864	0.468	0.707	1e-30
388504702	176	unknown [Lotus japonicus]	0.902	0.528	0.688	1e-30
449438224	188	PREDICTED: magnesium-dependent phosphata	0.864	0.473	0.707	2e-30
388515721	176	unknown [Lotus japonicus]	0.902	0.528	0.688	2e-30
224035303	129	unknown [Zea mays] gi|413933131|gb|AFW67	0.941	0.751	0.663	5e-30

>gi|255563310|ref|XP_002522658.1| Magnesium-dependent phosphatase, putative [Ricinus communis] gi|223538134|gb|EEF39745.1| Magnesium-dependent phosphatase, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 79/93 (84%), Gaps = 1/93 (1%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          MGD EK+K+EAL+IIG F+ LPRLVVFDLDYTLWPFYCEC  + E+P LYPHAKGIL AL
Sbjct: 1  MGD-EKIKDEALQIIGMFQMLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAKGILYAL 59

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K+KGI VA+ASRSP PDIA TFL KL + SMFV
Sbjct: 60 KDKGIDVAIASRSPTPDIANTFLDKLSLKSMFV 92

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465793|ref|XP_002269091.1| PREDICTED: magnesium-dependent phosphatase 1 [Vitis vinifera] gi|296087423|emb|CBI34012.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/88 (76%), Positives = 75/88 (85%)

Query: 6  KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
          +VK EAL+IIG  + LPRLVVFDLDYTLWPFYCEC  + E+P LYPHA+GIL ALKEKGI
Sbjct: 5  RVKEEALQIIGLCQVLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAEGILYALKEKGI 64

Query: 66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +A+ASRSP PDIAKTFL KLGI SMFV
Sbjct: 65 DMAIASRSPTPDIAKTFLDKLGIKSMFV 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4587681|gb|AAD25851.1| hypothetical protein [Arabidopsis thaliana]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 74/92 (80%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4  EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
          I +A+ASRSP  DIA TFL KL I  MFV  V
Sbjct: 64 IEMAIASRSPTSDIANTFLDKLNIKPMFVAKV 95

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222625757|gb|EEE59889.1| hypothetical protein OsJ_12493 [Oryza sativa Japonica Group]

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 1/93 (1%)

Query: 1   MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
           MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 155 MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 213

Query: 61  KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +EKGI +A+ASRSP PDIAK F+ KL I SMFV
Sbjct: 214 REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFV 246

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115455203|ref|NP_001051202.1| Os03g0737400 [Oryza sativa Japonica Group] gi|29788863|gb|AAP03409.1| unknown protein [Oryza sativa Japonica Group] gi|37999990|gb|AAR07077.1| unknown protein [Oryza sativa Japonica Group] gi|108710967|gb|ABF98762.1| magnesium-dependent phosphatase-1 family protein, expressed [Oryza sativa Japonica Group] gi|113549673|dbj|BAF13116.1| Os03g0737400 [Oryza sativa Japonica Group] gi|215686587|dbj|BAG88840.1| unnamed protein product [Oryza sativa Japonica Group] gi|218193717|gb|EEC76144.1| hypothetical protein OsI_13434 [Oryza sativa Indica Group]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 76/93 (81%), Gaps = 1/93 (1%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          MGD E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + E P LY HAKGI+ AL
Sbjct: 1  MGD-ERVKAEALQILGLFQALPRLVVFDLDYTLWPFYCECRSKRESPSLYRHAKGIMFAL 59

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          +EKGI +A+ASRSP PDIAK F+ KL I SMFV
Sbjct: 60 REKGIDMAIASRSPTPDIAKVFIDKLEIKSMFV 92

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79555268|ref|NP_179027.2| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana] gi|48310074|gb|AAT41748.1| At2g14110 [Arabidopsis thaliana] gi|50198845|gb|AAT70452.1| At2g14110 [Arabidopsis thaliana] gi|330251187|gb|AEC06281.1| haloacid dehalogenase-like hydrolase domain-containing protein [Arabidopsis thaliana]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct: 4  EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          I +A+ASRSP  DIA TFL KL I  MFV
Sbjct: 64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504702|gb|AFK40417.1| unknown [Lotus japonicus]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1  MEDMEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K +GI VA+AS+SP PDIA TFL KL I SMFV
Sbjct: 61 KGEGIDVAIASKSPTPDIATTFLDKLSISSMFV 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438224|ref|XP_004136889.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus] gi|449478847|ref|XP_004155433.1| PREDICTED: magnesium-dependent phosphatase 1-like [Cucumis sativus]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%)

Query: 5  EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
          + VK EAL+IIG F+ LP+LVVFDLDYTLWPFYCEC  + E+P +YPHAK IL ALK+KG
Sbjct: 4  DTVKAEALQIIGMFQVLPKLVVFDLDYTLWPFYCECRSKREMPSMYPHAKSILYALKDKG 63

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          I +A+ASRSP  DIAKTF+ KLGI SMFV
Sbjct: 64 IDLAIASRSPTSDIAKTFIGKLGIESMFV 92

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515721|gb|AFK45922.1| unknown [Lotus japonicus]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/93 (68%), Positives = 75/93 (80%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          M D+EKVK EAL+++G F+ LPRLVVFDLDYTLWPFYCEC  + + P LYPH KGI+ AL
Sbjct: 1  MEDVEKVKAEALQMMGVFQVLPRLVVFDLDYTLWPFYCECRSKRDTPSLYPHVKGIMYAL 60

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          K +GI VA+AS+SP PDIA TFL KL I SMFV
Sbjct: 61 KGEGIDVAIASKSPTPDIATTFLDKLSISSMFV 93

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224035303|gb|ACN36727.1| unknown [Zea mays] gi|413933131|gb|AFW67682.1| hypothetical protein ZEAMMB73_293867 [Zea mays]

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/98 (66%), Positives = 77/98 (78%), Gaps = 1/98 (1%)

Query: 1  MGDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL 60
          M D E+VK EAL+I+G F+ LPRLVVFDLDYTLWPFYCEC  + + P L+ HA+GI+ AL
Sbjct: 1  MSD-ERVKAEALQILGLFQVLPRLVVFDLDYTLWPFYCECRSKRDSPSLFRHARGIMYAL 59

Query: 61 KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL 98
          KEKGI +A+ASRSP PDIAK FL KL   SMFV  VR+
Sbjct: 60 KEKGIDMAIASRSPTPDIAKVFLDKLEFQSMFVAQVRI 97

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
TAIR|locus:2059440	190	AT2G14110 "AT2G14110" [Arabido	0.864	0.468	0.707	6.2e-30
ASPGD|ASPL0000029748	215	AN5512 [Emericella nidulans (t	0.660	0.316	0.392	3.6e-09
POMBASE|SPBP8B7.31	172	SPBP8B7.31 "acid phosphatase (	0.174	0.104	0.666	6.3e-08
SGD|S000000936	178	YER134C "Magnesium-dependent a	0.174	0.101	0.611	1.1e-07
UNIPROTKB|F1SGN7	164	LOC100520440 "Uncharacterized	0.728	0.457	0.344	4.3e-06
CGD|CAL0000216	175	orf19.6929 [Candida albicans (	0.640	0.377	0.337	9.4e-06
UNIPROTKB|Q59SU0	175	CaO19.14191 "Putative uncharac	0.640	0.377	0.337	9.4e-06
UNIPROTKB|F1MXF2	164	MDP-1 "Uncharacterized protein	0.708	0.445	0.329	1.5e-05
RGD|1311147	164	Mdp1 "magnesium-dependent phos	0.689	0.432	0.344	3e-05
MGI|MGI:1915131	164	Mdp1 "magnesium-dependent phos	0.708	0.445	0.318	6.6e-05

TAIR|locus:2059440 AT2G14110 "AT2G14110" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 63/89 (70%), Positives = 73/89 (82%)

Query:     5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG 64
             EKVK+EA++I+G F+ LPRLVVFDLDYTLWPFYCEC  + E+P +YP AKGIL ALKEKG
Sbjct:     4 EKVKDEAMQIMGMFQILPRLVVFDLDYTLWPFYCECRSKREMPSMYPQAKGILSALKEKG 63

Query:    65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             I +A+ASRSP  DIA TFL KL I  MFV
Sbjct:    64 IEMAIASRSPTSDIANTFLDKLNIKPMFV 92

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000029748 AN5512 [Emericella nidulans (taxid:162425)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 33/84 (39%), Positives = 47/84 (55%)

Query:    21 LPRLVVFDLDYTLWPFYCEC--------------CYE--DEIPYLYPHAKGILEALKEKG 64
             LP+L+ FDLDYTLWPF+ +               C +  +E    YPH   IL + K + 
Sbjct:    29 LPKLIAFDLDYTLWPFWVDTHVTPPIKARDNNSRCTDKWNESFAFYPHVNSILTSCKSRS 88

Query:    65 IHVAVASRSPAPDIAKTFLHKLGI 88
             I +A+ASR+ APD+A+  L +L I
Sbjct:    89 IPLALASRTHAPDLARDMLKQLHI 112

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

POMBASE|SPBP8B7.31 SPBP8B7.31 "acid phosphatase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 75 (31.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 12/18 (66%), Positives = 15/18 (83%)

Query:    22 PRLVVFDLDYTLWPFYCE 39
             P+ VVFDLDYTLWP + +
Sbjct:     8 PKCVVFDLDYTLWPLWID 25

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016791 "phosphatase activity" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

SGD|S000000936 YER134C "Magnesium-dependent acid phosphatase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 76 (31.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query:    22 PRLVVFDLDYTLWPFYCE 39
             P +  FDLDYT+WP YC+
Sbjct:     5 PDVAAFDLDYTIWPCYCD 22

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0016311 "dephosphorylation" evidence=IEA

GO:0035335 "peptidyl-tyrosine dephosphorylation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1SGN7 LOC100520440 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    19 ENLPRLVVFDLDYTLWPFYCECCYED---------------EIPYLYPHAKGILEALKEK 63
             E LP+L VFDLDYTLWPF+ +   +                +   LYP    +LE L+  
Sbjct:     2 ERLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTIRDRRGQTVRLYPEVPEVLERLQGL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   FV
Sbjct:    62 GVPVAAASRTGEVEGANQLLELFDLVRHFV 91

GO:0016791 "phosphatase activity" evidence=IEA

CGD|CAL0000216 orf19.6929 [Candida albicans (taxid:5476)]

 Score = 103 (41.3 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003993 "acid phosphatase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59SU0 CaO19.14191 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 103 (41.3 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 28/83 (33%), Positives = 40/83 (48%)

Query:    22 PRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGI 65
             P+ VVFDLDYTLWP +C+                  Y+ ++ + Y   + I+  L E  +
Sbjct:     7 PKAVVFDLDYTLWPCWCDTHIMTPLKSVSPTTVVDRYDFQLSF-YKDVESIIRELVENDV 65

Query:    66 HVAVASRSPAPDIAKTFLHKLGI 88
              +  ASR+  P IAK  L  L I
Sbjct:    66 KIIAASRTATPHIAKQLLSMLHI 88

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MXF2 MDP-1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 29/88 (32%), Positives = 40/88 (45%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIP---------------YLYPHAKGILEALKEKGI 65
             LP+L VFDLDYTLWPF+ +   +                    LYP    +LE L+  G+
Sbjct:     4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKNSDGTVRDRRGQSIQLYPEVPEVLERLRGLGV 63

Query:    66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
              +A ASR+   + A   L    +   FV
Sbjct:    64 PIAAASRTGEVEGANQLLELFDLVRYFV 91

GO:0016791 "phosphatase activity" evidence=IEA

RGD|1311147 Mdp1 "magnesium-dependent phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 31/90 (34%), Positives = 42/90 (46%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIPY-----------------LYPHAKGILEALKEK 63
             LP+L VFDLDYTLWPF+ +  + D  P+                 LYP    IL  L+  
Sbjct:     4 LPKLAVFDLDYTLWPFWVDT-HVDP-PFHKSSDGTVRDRRGQDIRLYPEVPEILGRLQSL 61

Query:    64 GIHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
             G+ VA ASR+   + A   L    +   F+
Sbjct:    62 GVPVAAASRTSEIEGANQLLELFDLGKYFI 91

GO:0005575 "cellular_component" evidence=ND

GO:0016311 "dephosphorylation" evidence=IDA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0030389 "fructosamine metabolic process" evidence=IDA

MGI|MGI:1915131 Mdp1 "magnesium-dependent phosphatase 1" [Mus musculus (taxid:10090)]

 Score = 95 (38.5 bits), Expect = 6.6e-05, P = 6.6e-05
 Identities = 28/88 (31%), Positives = 38/88 (43%)

Query:    21 LPRLVVFDLDYTLWPFYCECCYEDEIP---------------YLYPHAKGILEALKEKGI 65
             LP+L VFDLDYTLWPF+ +   +                    LYP    +L  L+  G+
Sbjct:     4 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGV 63

Query:    66 HVAVASRSPAPDIAKTFLHKLGIHSMFV 93
              VA ASR+     A   L    +   F+
Sbjct:    64 PVAAASRTSEIQGANQLLELFDLGKYFI 91

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016311 "dephosphorylation" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=ISO

GO:0030389 "fructosamine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	103
pfam12689	164	pfam12689, Acid_PPase, Acid Phosphatase	2e-28
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	3e-10
TIGR01685	174	TIGR01685, MDP-1, magnesium-dependent phosphatase-	3e-08
TIGR01681	128	TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatas	6e-08
COG0561	264	COG0561, Cof, Predicted hydrolases of the HAD supe	2e-05
TIGR00099	256	TIGR00099, Cof-subfamily, Cof subfamily of IIB sub	3e-04
TIGR01662	132	TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase,	4e-04
pfam13344	101	pfam13344, Hydrolase_6, Haloacid dehalogenase-like	4e-04
COG0560	212	COG0560, SerB, Phosphoserine phosphatase [Amino ac	6e-04
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	0.001
TIGR01668	170	TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfam	0.003
COG0546	220	COG0546, Gph, Predicted phosphatases [General func	0.003

>gnl|CDD|221713 pfam12689, Acid_PPase, Acid Phosphatase

 Score =  100 bits (252), Expect = 2e-28
 Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 17/85 (20%)

Query: 21 LPRLVVFDLDYTLWPFYCEC----------------CYEDEIPYLYPHAKGILEALKEKG 64
          LP+L+VFDLDYTLWPF+C+                    +E+  LYP    IL+ LKEKG
Sbjct: 2  LPKLIVFDLDYTLWPFWCDTHVGPPFKKDKNGTVVDRRGEEL-SLYPDVPSILQELKEKG 60

Query: 65 IHVAVASRSPAPDIAKTFLHKLGIH 89
          I +AVASR+ APD A+  L  L I+
Sbjct: 61 ITIAVASRTDAPDWARELLKLLHIN 85

This family contains phosphatase enzymes and other proteins of the HAD superfamily. It includes MDP-1 which is a eukaryotic magnesium-dependent acid phosphatase. Length = 164

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL 83
           V+FDLD TL         E E   LYP  K  L+ LKEKGI +A+A+     ++ +  L
Sbjct: 1  AVLFDLDGTLLDSE-PGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLE-LL 58

Query: 84 HKLGIHSMFVPMV 96
           +LG+   F P++
Sbjct: 59 EELGLDDYFDPVI 71

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|233529 TIGR01685, MDP-1, magnesium-dependent phosphatase-1

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 19/81 (23%)

Query: 21 LPRLVVFDLDYTLWPFYC------------------ECCYEDEIPYLYPHAKGILEALKE 62
          LPR++VFDLD TLW  Y                         E+  L    + +L+ LK+
Sbjct: 1  LPRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVT-LIKEVRDVLQTLKD 59

Query: 63 KGIHVAVASRSPAPDIAKTFL 83
           G ++A AS +  P+ A   L
Sbjct: 60 AGTYLATASWNDVPEWAYEIL 80

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues. Length = 174

>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily IIIC

 Score = 46.7 bits (111), Expect = 6e-08
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEI---PYLYPHAKGILEALKEKGIHVAVASRSPAPDIA 79
          +++VFDLD TLW        ED I          +  L+ LK+ G  +A+AS +  P +A
Sbjct: 1  KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60

Query: 80 ----KTFLHKLGI---HSMFVPMV 96
              K F     I      F P+ 
Sbjct: 61 YELLKIFEDFGIIFPLAEYFDPLT 84

This model represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III (also including IIIA - TIGR01662 and IIIB - pfam03767) contains sequences which do not contain either of the insert domains (between the 1st and 2nd conserved catalytic motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549, TIGR01488, TIGR01494, TIGR01658, TIGR01544 and TIGR01545, or between the 2nd and 3rd, subfamily II - TIGR01460 and TIGR01484). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (TIGR01684), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (TIGR01685), a family of bacteria including the Streptomyces FkbH protein (TIGR01686), and a small clade including the Pasteurella BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in archetecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC. Length = 128

>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           +L+ FDLD TL            I    P  K  L  L+EKG+ V +A+  P PD   +
Sbjct: 3  IKLLAFDLDGTL------LDSNKTIS---PETKEALARLREKGVKVVLATGRPLPD-VLS 52

Query: 82 FLHKLGIHSMFV 93
           L +LG+    +
Sbjct: 53 ILEELGLDGPLI 64

Length = 264

>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L+  DLD TL         +  I    P  K  L  L+EKGI V +A+ R       K  
Sbjct: 1  LIFIDLDGTL------LNDDHTIS---PSTKEALAKLREKGIKVVLATGRPYK--EVKNI 49

Query: 83 LHKLGI 88
          L +LG+
Sbjct: 50 LKELGL 55

This subfamily of sequences falls within the Class-IIB subfamily (TIGR01484) of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. The use of the name "Cof" as an identifier here is arbitrary and refers to the E. coli Cof protein. This subfamily is notable for the large number of recent paralogs in many species. Listeria, for instance, has 12, Clostridium, Lactococcus and Streptococcus pneumoniae have 8 each, Enterococcus and Salmonella have 7 each, and Bacillus subtilus, Mycoplasma, Staphylococcus and E. coli have 6 each. This high degree of gene duplication is limited to the gamma proteobacteria and low-GC gram positive lineages. The profusion of genes in this subfamily is not coupled with a high degree of divergence, so it is impossible to determine an accurate phylogeny at the equivalog level. Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars. Possibly the diversification of genes in this subfamily represents the diverse sugars and polysaccharides that various bacteria find in their biological niches. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences [Unknown function, Enzymes of unknown specificity]. Length = 256

>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS 71
          + VV DLD TL         EDE   LYP     L  LKE G  V + +
Sbjct: 1  KGVVLDLDGTLTDDVPYVDDEDER-ILYPEVPDALAELKEAGYKVVIVT 48

This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme [Unknown function, Enzymes of unknown specificity]. Length = 132

>gnl|CDD|205524 pfam13344, Hydrolase_6, Haloacid dehalogenase-like hydrolase

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 16/69 (23%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDIAK 80
           +FD+D  LW                P A   L AL+  G  V      +SRS     AK
Sbjct: 1  FLFDVDGVLWRG----------GEPIPGAAEALNALRAAGKPVVFVTNNSSRSRE-QYAK 49

Query: 81 TFLHKLGIH 89
            L KLG  
Sbjct: 50 -KLRKLGFD 57

This family is part of the HAD superfamily. Length = 101

>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism]

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +E   L P A+ ++ ALK  G  V + S      + +    +LGI  + 
Sbjct: 73  EEFLRLTPGAEELVAALKAAGAKVVIISGGFTF-LVEPIAERLGIDYVV 120

Length = 212

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P    +LE LK +GI +AVAS SP    A+  L +LG+   F  +V
Sbjct: 87  PIPGVVELLEQLKARGIPLAVASSSP-RRAAERVLARLGLLDYFDVIV 133

Length = 221

>gnl|CDD|233519 TIGR01668, YqeG_hyp_ppase, HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH 84
          VV D D TL                YP  +  +E LK  G  + + S +     AK    
Sbjct: 28 VVLDKDNTLVYPD--------HNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79

Query: 85 KLGI 88
           LGI
Sbjct: 80 ALGI 83

This family of hypothetical proteins is a member of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterized members of this subfamily (TIGR01662) and most characterized members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs, all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family. Length = 170

>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction only]

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 18  FENLPRLVVFDLDYTLWPFYCEC---CYEDEIP-YLYPHAKGILEALKEKGIHVAVASRS 73
            E L      +    L     E     Y + +   L+P  K +L ALK  G  + + +  
Sbjct: 55  IERLLGEADEEAAAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNK 114

Query: 74  PAPDIAKTFLHKLGIHSMF 92
           P        L  LG+   F
Sbjct: 115 PE-RELDILLKALGLADYF 132

Length = 220

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	99.61
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.59
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	99.57
PRK13288	214	pyrophosphatase PpaX; Provisional	99.52
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.51
PHA03398	303	viral phosphatase superfamily protein; Provisional	99.51
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.5
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.49
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.48
COG0546	220	Gph Predicted phosphatases [General function predi	99.48
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.48
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.47
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.46
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.46
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.46
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.45
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.44
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.42
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.42
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.42
PLN02575	381	haloacid dehalogenase-like hydrolase	99.42
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.41
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.4
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.39
PRK11587	218	putative phosphatase; Provisional	99.38
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.37
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.37
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.37
PLN02645	311	phosphoglycolate phosphatase	99.36
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.36
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.36
PLN02940	382	riboflavin kinase	99.35
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.35
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.35
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.34
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.32
PRK10513	270	sugar phosphate phosphatase; Provisional	99.32
PRK01158	230	phosphoglycolate phosphatase; Provisional	99.32
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.31
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.31
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	99.31
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	99.3
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	99.3
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	99.3
PRK10976	266	putative hydrolase; Provisional	99.3
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.29
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.29
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.29
PLN02954	224	phosphoserine phosphatase	99.29
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.28
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.27
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.27
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.27
PRK09449	224	dUMP phosphatase; Provisional	99.25
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.25
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	99.24
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.24
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	99.24
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.24
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.24
PRK10444	248	UMP phosphatase; Provisional	99.24
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.23
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.23
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.23
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.22
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.22
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.22
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	99.2
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.19
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	99.18
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.17
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.16
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	99.16
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.15
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.15
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	99.15
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	99.15
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	99.14
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	99.14
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	99.14
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	99.13
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.13
PRK06769	173	hypothetical protein; Validated	99.13
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.13
PTZ00174	247	phosphomannomutase; Provisional	99.13
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.12
PLN02887	580	hydrolase family protein	99.12
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.1
PRK11590	211	hypothetical protein; Provisional	99.1
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	99.09
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.08
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.08
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.07
PHA02597	197	30.2 hypothetical protein; Provisional	99.07
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	99.05
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.05
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	99.04
PHA02530	300	pseT polynucleotide kinase; Provisional	99.04
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.03
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	99.02
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	99.01
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	99.01
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.0
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.0
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.0
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.99
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	98.98
COG4996	164	Predicted phosphatase [General function prediction	98.96
PRK08238	479	hypothetical protein; Validated	98.95
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	98.95
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.94
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	98.92
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	98.91
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	98.89
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	98.87
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	98.87
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	98.86
PLN02423	245	phosphomannomutase	98.86
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	98.85
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	98.84
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	98.8
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	98.76
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	98.76
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	98.74
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	98.73
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.73
PLN03017	366	trehalose-phosphatase	98.73
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	98.72
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	98.7
PLN02151	354	trehalose-phosphatase	98.67
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	98.66
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	98.66
PLN02580	384	trehalose-phosphatase	98.65
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	98.64
KOG4549	144	consensus Magnesium-dependent phosphatase [General	98.6
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.59
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	98.57
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	98.57
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	98.51
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	98.48
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.46
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	98.45
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	98.45
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	98.44
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	98.43
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	98.42
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	98.4
COG0241	181	HisB Histidinol phosphatase and related phosphatas	98.35
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	98.34
PLN02382	413	probable sucrose-phosphatase	98.33
COG4359	220	Uncharacterized conserved protein [Function unknow	98.27
PTZ00445	219	p36-lilke protein; Provisional	98.19
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	98.17
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	98.15
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	98.15
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	98.15
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	98.12
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	98.11
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	98.08
PLN02811	220	hydrolase	98.04
COG2503	274	Predicted secreted acid phosphatase [General funct	97.92
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	97.87
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	97.85
KOG1618	389	consensus Predicted phosphatase [General function	97.7
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	97.55
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	97.5
PF06437	408	ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR0	97.41
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	97.36
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	97.1
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	96.99
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	96.95
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	96.92
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	96.69
COG3700	237	AphA Acid phosphatase (class B) [General function	96.64
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	96.62
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	96.61
PRK10671	834	copA copper exporting ATPase; Provisional	96.61
PLN02499	498	glycerol-3-phosphate acyltransferase	96.58
PLN02177	497	glycerol-3-phosphate acyltransferase	96.55
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	96.4
COG4229	229	Predicted enolase-phosphatase [Energy production a	96.38
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	96.2
KOG2116	738	consensus Protein involved in plasmid maintenance/	96.14
PRK01122	679	potassium-transporting ATPase subunit B; Provision	96.0
COG4087	152	Soluble P-type ATPase [General function prediction	95.81
PF01740	117	STAS: STAS domain; InterPro: IPR002645 The STAS (S	95.79
PRK14010	673	potassium-transporting ATPase subunit B; Provision	95.68
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	95.43
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	95.21
COG0731	296	Fe-S oxidoreductases [Energy production and conver	95.17
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	95.0
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	94.9
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	94.88
TIGR02886	106	spore_II_AA anti-sigma F factor antagonist. The an	94.88
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	94.79
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	94.76
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	94.67
TIGR00815	563	sulP high affinity sulphate transporter 1. (2) SO4	94.6
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	94.46
cd07041	109	STAS_RsbR_RsbS_like Sulphate Transporter and Anti-	94.44
KOG0202	972	consensus Ca2+ transporting ATPase [Inorganic ion	94.32
COG4850	373	Uncharacterized conserved protein [Function unknow	94.23
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	94.22
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	94.19
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	94.06
PRK15122	903	magnesium-transporting ATPase; Provisional	93.78
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	93.55
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	93.48
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	93.03
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	92.82
TIGR00377	108	ant_ant_sig anti-anti-sigma factor. This superfami	92.65
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	92.51
cd06844	100	STAS Sulphate Transporter and Anti-Sigma factor an	91.85
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	91.75
PF05822	246	UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); Inter	90.69
COG2433	652	Uncharacterized conserved protein [Function unknow	90.01
KOG2470	510	consensus Similar to IMP-GMP specific 5'-nucleotid	89.96
cd07043	99	STAS_anti-anti-sigma_factors Sulphate Transporter	89.5
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	89.44
KOG2469	424	consensus IMP-GMP specific 5'-nucleotidase [Nucleo	89.4
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	89.03
COG1366	117	SpoIIAA Anti-anti-sigma regulatory factor (antagon	88.64
PF02590	155	SPOUT_MTase: Predicted SPOUT methyltransferase; In	88.45
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	87.72
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	87.71
COG1576	155	Uncharacterized conserved protein [Function unknow	87.68
PRK04531	398	acetylglutamate kinase; Provisional	87.68
TIGR02826	147	RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph	86.89
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	86.86
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	85.9
cd06595	292	GH31_xylosidase_XylS-like This family represents a	85.83
cd06539	78	CIDE_N_A CIDE_N domain of CIDE-A proteins. The CID	85.79
PRK11660	568	putative transporter; Provisional	85.56
PLN03190	1178	aminophospholipid translocase; Provisional	84.83
PF03332	220	PMM: Eukaryotic phosphomannomutase; InterPro: IPR0	84.76
smart00266	74	CAD Domains present in proteins implicated in post	84.52
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	84.52
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	84.18
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	83.98
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	83.95
CHL00202	284	argB acetylglutamate kinase; Provisional	83.94
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	83.76
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	83.16
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	83.05
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	82.93
PRK13762	322	tRNA-modifying enzyme; Provisional	82.17
COG1501	772	Alpha-glucosidases, family 31 of glycosyl hydrolas	82.13
KOG0204	1034	consensus Calcium transporting ATPase [Inorganic i	80.96
PF00072	112	Response_reg: Response regulator receiver domain;	80.95
cd01615	78	CIDE_N CIDE_N domain, found at the N-terminus of t	80.81
KOG1050	732	consensus Trehalose-6-phosphate synthase component	80.29
cd05017	119	SIS_PGI_PMI_1 The members of this protein family c	80.16

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=99.61  E-value=3.3e-15  Score=95.64  Aligned_cols=81  Identities=44%  Similarity=0.712  Sum_probs=57.7

Q ss_pred             CCceEEEeCCCCccccccccc----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECC----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      -+++++||+|+|||+++++..                ..+....+||++.++|+.|+++|++++++|..+.+.+|++.++
T Consensus         2 ~PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~   81 (169)
T PF12689_consen    2 LPKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK   81 (169)
T ss_dssp             S-SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred             CCcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence            478999999999999988753                4566778999999999999999999999998777777999999


Q ss_pred             HcCCC----------CccccCeeeecc
Q 034147           85 KLGIH----------SMFVPMVRLSCC  101 (103)
Q Consensus        85 ~~~l~----------~~~~~~~i~~~~  101 (103)
                      .+++.          ++|...+|+.++
T Consensus        82 ~l~i~~~~~~~~~~~~~F~~~eI~~gs  108 (169)
T PF12689_consen   82 LLEIDDADGDGVPLIEYFDYLEIYPGS  108 (169)
T ss_dssp             HTT-C----------CCECEEEESSS-
T ss_pred             hcCCCccccccccchhhcchhheecCc
Confidence            99999          888777777653

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.59  E-value=5.3e-15  Score=95.19  Aligned_cols=77  Identities=32%  Similarity=0.443  Sum_probs=65.3

Q ss_pred             CceEEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCC-CchhHHHHHH
Q 034147           22 PRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFL   83 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~-~~~~i~~~~l   83 (103)
                      +++++||+|+|||+++++.-                 .......++||+.++|+.|+++|++++|+||+ .... ++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~-~~~~L   80 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEW-AYEIL   80 (174)
T ss_pred             CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHH-HHHHH
Confidence            68999999999999876521                 33456789999999999999999999999998 6666 68899


Q ss_pred             HHcCCC---------CccccCeeeecc
Q 034147           84 HKLGIH---------SMFVPMVRLSCC  101 (103)
Q Consensus        84 ~~~~l~---------~~~~~~~i~~~~  101 (103)
                      +.+++.         ++|  +.+++++
T Consensus        81 ~~~~l~~~~~~~~~~~~F--d~iv~~~  105 (174)
T TIGR01685        81 GTFEITYAGKTVPMHSLF--DDRIEIY  105 (174)
T ss_pred             HhCCcCCCCCcccHHHhc--eeeeecc
Confidence            999998         888  8888765

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01684 viral_ppase viral phosphatase

Probab=99.57  E-value=1.6e-14  Score=99.00  Aligned_cols=72  Identities=26%  Similarity=0.315  Sum_probs=61.3

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      ..+++++||+||||++.       .+.+++. ||+.++|++|+++|++++|+||+++.. +...++++|+..+|  +.|+
T Consensus       124 ~~~kvIvFDLDgTLi~~-------~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~-v~~~L~~lGLd~YF--dvII  193 (301)
T TIGR01684       124 EPPHVVVFDLDSTLITD-------EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDH-VVESMRKVKLDRYF--DIII  193 (301)
T ss_pred             ccceEEEEecCCCCcCC-------CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHH-HHHHHHHcCCCccc--CEEE
Confidence            35799999999999972       2233344 999999999999999999999999988 68999999999999  7877


Q ss_pred             ecc
Q 034147           99 SCC  101 (103)
Q Consensus        99 ~~~  101 (103)
                      ++.
T Consensus       194 s~G  196 (301)
T TIGR01684       194 SGG  196 (301)
T ss_pred             ECC
Confidence            764

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.52  E-value=3.7e-14  Score=93.27  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++||+.++|++|+++|++++|+||+.... +...++.+|+..+|  +.+++++.
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f--~~i~~~~~  133 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDT-VEMGLKLTGLDEFF--DVVITLDD  133 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhce--eEEEecCc
Confidence            45689999999999999999999999999888 59999999999999  88888653

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.51  E-value=3.5e-14  Score=87.23  Aligned_cols=73  Identities=27%  Similarity=0.316  Sum_probs=55.4

Q ss_pred             ceEEEeCCCCcccccccccccCCCc-----ccChhHHHHHHHHHHCCCeEEEEeCC-CchhHHHHHHHHcC-------CC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIP-----YLYPHAKGILEALKEKGIHVAVASRS-PAPDIAKTFLHKLG-------IH   89 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~-----~~~~g~~~~l~~l~~~G~~v~i~T~~-~~~~i~~~~l~~~~-------l~   89 (103)
                      |+++||+|||||+.+..  ......     +++||+.++|++|+++|++++++||+ .... +...+++++       +.
T Consensus         1 kli~~DlD~Tl~~~~~~--~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~-~~~~l~~~~~~~~i~~l~   77 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENI--VVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHV-AYELLKIFEDFGIIFPLA   77 (128)
T ss_pred             CEEEEeCCCCCCCCCcc--cccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH-HHHHHHhccccccchhhH
Confidence            57999999999985210  001101     47999999999999999999999999 5555 678888888       67


Q ss_pred             CccccCeeeec
Q 034147           90 SMFVPMVRLSC  100 (103)
Q Consensus        90 ~~~~~~~i~~~  100 (103)
                      ++|  +.++++
T Consensus        78 ~~f--~~~~~~   86 (128)
T TIGR01681        78 EYF--DPLTIG   86 (128)
T ss_pred             hhh--hhhhhc
Confidence            777  666555

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=99.51  E-value=1e-13  Score=95.04  Aligned_cols=72  Identities=25%  Similarity=0.345  Sum_probs=60.8

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      .-+++++||+||||++      . .+..++. |++.++|++|+++|++++|+||+++.. +...++++|+..+|  +.|+
T Consensus       126 ~~~~~i~~D~D~TL~~------~-~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~-v~~~Le~lgL~~yF--DvII  195 (303)
T PHA03398        126 EIPHVIVFDLDSTLIT------D-EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREH-VVHSLKETKLEGYF--DIII  195 (303)
T ss_pred             eeccEEEEecCCCccC------C-CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHcCCCccc--cEEE
Confidence            3478999999999997      2 2233344 999999999999999999999999888 69999999999999  7777


Q ss_pred             ecc
Q 034147           99 SCC  101 (103)
Q Consensus        99 ~~~  101 (103)
                      +++
T Consensus       196 ~~g  198 (303)
T PHA03398        196 CGG  198 (303)
T ss_pred             ECC
Confidence            764

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.50  E-value=5.9e-14  Score=94.55  Aligned_cols=54  Identities=13%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++||+.++|++|+++|++++|+||++... ++..++++++.++|  +.+++++.
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~F--d~iv~~~~  159 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPREN-AELMISLLGLSDFF--QAVIIGSE  159 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCChhhC--cEEEecCc
Confidence            35689999999999999999999999999888 69999999999999  88888763

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.49  E-value=1.1e-13  Score=94.08  Aligned_cols=54  Identities=28%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++||+.++|++|+++|++++|+||++... +...++++++..+|  +.+++++.
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~-~~~~l~~~gl~~~F--d~ii~~~d  160 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRY-LERAIEAVGMEGFF--SVVLAAED  160 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHH-HHHHHHHcCCHhhC--cEEEeccc
Confidence            45689999999999999999999999999888 59999999999999  88888763

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.48  E-value=8.8e-14  Score=95.13  Aligned_cols=53  Identities=21%  Similarity=0.445  Sum_probs=47.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..+++||+.++|++|+++|++++|+||+.... +...++++|+.++|  +.+++++
T Consensus       140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~-~~~~L~~~gl~~~F--~~vi~~~  192 (273)
T PRK13225        140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQN-IEAFLQRQGLRSLF--SVVQAGT  192 (273)
T ss_pred             cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCChhhe--EEEEecC
Confidence            45689999999999999999999999999888 69999999999999  6777654

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.48  E-value=1.7e-13  Score=90.94  Aligned_cols=52  Identities=27%  Similarity=0.486  Sum_probs=47.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|..|+++|++++|+||++... ++..++++|+.++|  +.+++++
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~-~~~~l~~~gl~~~F--~~i~g~~  139 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERE-LDILLKALGLADYF--DVIVGGD  139 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHhCCcccc--ceEEcCC
Confidence            4689999999999999999999999999998 69999999999999  8888743

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.48  E-value=1.5e-13  Score=90.87  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|+.|+++|++++|+||+.... ++..++++++..+|  +.+++++
T Consensus        90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  142 (222)
T PRK10826         90 TRPLLPGVREALALCKAQGLKIGLASASPLHM-LEAVLTMFDLRDYF--DALASAE  142 (222)
T ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHhCcchhcc--cEEEEcc
Confidence            35689999999999999999999999999888 59999999999999  7888765

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.47  E-value=2e-13  Score=91.66  Aligned_cols=69  Identities=25%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHH--HHHHHcCCCC-ccccCe
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK--TFLHKLGIHS-MFVPMV   96 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~--~~l~~~~l~~-~~~~~~   96 (103)
                      .++++++||+||||++          ...++||+.++|++|+++|++++++||+++.. ..  ..++++|+.. +|  +.
T Consensus         6 ~~~~~~~~D~dG~l~~----------~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~--~~   72 (242)
T TIGR01459         6 NDYDVFLLDLWGVIID----------GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLP--EM   72 (242)
T ss_pred             hcCCEEEEeccccccc----------CCccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCcccc--ce
Confidence            4588999999999997          35689999999999999999999999988765 45  6789999987 77  88


Q ss_pred             eeecc
Q 034147           97 RLSCC  101 (103)
Q Consensus        97 i~~~~  101 (103)
                      |+++.
T Consensus        73 Ii~s~   77 (242)
T TIGR01459        73 IISSG   77 (242)
T ss_pred             EEccH
Confidence            88764

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.46  E-value=2.9e-13  Score=80.09  Aligned_cols=63  Identities=29%  Similarity=0.338  Sum_probs=48.4

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---hhHHHHHHHHcCCCCccccCeeeec
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ++||+|||||.          ...++||+.+++++|+++|++++++||++.   ..+ ...++.+|+.-  ..+.|+++
T Consensus         1 ~l~D~dGvl~~----------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~-~~~L~~~Gi~~--~~~~i~ts   66 (101)
T PF13344_consen    1 FLFDLDGVLYN----------GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEY-AKKLKKLGIPV--DEDEIITS   66 (101)
T ss_dssp             EEEESTTTSEE----------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHH-HHHHHHTTTT----GGGEEEH
T ss_pred             CEEeCccEeEe----------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHH-HHHHHhcCcCC--CcCEEECh
Confidence            68999999997          356899999999999999999999998873   342 55567888864  33777775

...

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.46  E-value=2.8e-13  Score=89.33  Aligned_cols=53  Identities=25%  Similarity=0.306  Sum_probs=47.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC--CccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH--SMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~--~~~~~~~i~~~~~  102 (103)
                      ..++||+.++|++|+++|++++|+||++... ....++++++.  .+|  +.+++++.
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~~f--~~i~~~~~  140 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDT-AERLLEKLGWTVGDDV--DAVVCPSD  140 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHHhhhhhhccC--CEEEcCCc
Confidence            4699999999999999999999999999888 59999999998  888  88887753

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.46  E-value=2.1e-13  Score=89.81  Aligned_cols=52  Identities=19%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .++||+.++|++|+++|++++|+||++... +...++++++..+|  +.+++++.
T Consensus        94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--~~i~~~~~  145 (221)
T TIGR02253        94 RVYPGVRDTLMELRESGYRLGIITDGLPVK-QWEKLERLGVRDFF--DAVITSEE  145 (221)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEeCCchHH-HHHHHHhCChHHhc--cEEEEecc
Confidence            688999999999999999999999999777 58899999999999  88887653

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.45  E-value=2.3e-13  Score=90.57  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++||+.++|++|+++|++++|+||++... ++..++++++..+|  +.+++++.
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~iv~s~~  144 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHN-LAVKLEHTGLDAHL--DLLLSTHT  144 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHH-HHHHHHHCCcHHHC--CEEEEeee
Confidence            4688999999999999999999999999888 58889999999999  88887653

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.44  E-value=1.6e-13  Score=91.28  Aligned_cols=54  Identities=37%  Similarity=0.445  Sum_probs=48.1

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....+.||+.++|++|+++|++++++|++++.. ++..++.+|+.++|  +.+++++
T Consensus        83 ~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~-~~~~L~~~gl~~~f--~~~v~~~  136 (221)
T COG0637          83 EGLKPIPGVVELLEQLKARGIPLAVASSSPRRA-AERVLARLGLLDYF--DVIVTAD  136 (221)
T ss_pred             cCCCCCccHHHHHHHHHhcCCcEEEecCChHHH-HHHHHHHccChhhc--chhccHH
Confidence            445789999999999999999999999999888 59999999999999  7777654

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.42  E-value=3.2e-13  Score=87.79  Aligned_cols=52  Identities=27%  Similarity=0.310  Sum_probs=46.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++|+||++... ....++++|+..+|  +.+++++
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~gl~~~f--d~i~~s~  142 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAM-LKSLVKHAGLDDPF--DAVLSAD  142 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHCCChhhh--heeEehh
Confidence            4578999999999999999999999999887 58999999998899  8888765

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.42  E-value=7e-13  Score=90.57  Aligned_cols=53  Identities=21%  Similarity=0.360  Sum_probs=46.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++||+.++|+.|+++|++++|+||++... ++..++++++..+|  +.+++++.
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~-~~~~l~~~~i~~~f--~~i~~~d~  152 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERF-VAPLLDQMKIGRYF--RWIIGGDT  152 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHH-HHHHHHHcCcHhhC--eEEEecCC
Confidence            4578999999999999999999999999877 58899999999888  77887753

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.42  E-value=5.3e-13  Score=88.94  Aligned_cols=52  Identities=21%  Similarity=0.287  Sum_probs=46.2

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++|+||++... +...++++++..+|  +.+++++
T Consensus        94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~-~~~~l~~~~l~~~f--~~i~~~~  145 (229)
T PRK13226         94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYL-ARLILPQLGWEQRC--AVLIGGD  145 (229)
T ss_pred             CeeCCCHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCchhcc--cEEEecC
Confidence            5689999999999999999999999999877 58889999998888  7777765

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.42  E-value=6.4e-13  Score=94.34  Aligned_cols=54  Identities=20%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++||+.++|+.|+++|++++|+||+++.. ++..++++|+.++|  +.|++++.
T Consensus       214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~-~~~~L~~lgL~~yF--d~Iv~sdd  267 (381)
T PLN02575        214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKT-LENAIGSIGIRGFF--SVIVAAED  267 (381)
T ss_pred             CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCHHHc--eEEEecCc
Confidence            35689999999999999999999999999888 59999999999999  88988764

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.41  E-value=1.1e-12  Score=86.50  Aligned_cols=53  Identities=36%  Similarity=0.490  Sum_probs=46.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++++.|+++|++++++||+.... ....++++++..+|  +.+++++
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  143 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPF-VAPLLEALGIADYF--SVVIGGD  143 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCccCc--cEEEcCC
Confidence            35689999999999999999999999999887 58999999998888  7777654

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.40  E-value=6.6e-13  Score=86.93  Aligned_cols=53  Identities=26%  Similarity=0.538  Sum_probs=47.5

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|+.|+++|++++|+||++... ++..++++++..+|  +.+++++
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  135 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPL-ARPLLELLGLAKYF--SVLIGGD  135 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCcHhhC--cEEEecC
Confidence            35689999999999999999999999999887 69999999999998  7888765

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.39  E-value=7.4e-13  Score=86.59  Aligned_cols=53  Identities=23%  Similarity=0.448  Sum_probs=47.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|++|+++|++++|+||++... +...++++++..+|  +.+++++
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~-~~~~l~~~~l~~~f--~~i~~~~  125 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPR-ARSLLEALGLLPLF--DHVIGSD  125 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHcCChhhe--eeEEecC
Confidence            45789999999999999999999999999888 58899999999998  7787764

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK11587 putative phosphatase; Provisional

Probab=99.38  E-value=1.5e-12  Score=86.03  Aligned_cols=52  Identities=21%  Similarity=0.183  Sum_probs=43.0

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|+.|+++|++++|+||++... +...++..++ .++  +.+++++
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~-~~~~l~~~~l-~~~--~~i~~~~  132 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPV-ASARHKAAGL-PAP--EVFVTAE  132 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchH-HHHHHHhcCC-CCc--cEEEEHH
Confidence            45689999999999999999999999999877 5778888887 445  5666653

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.37  E-value=3.8e-12  Score=85.52  Aligned_cols=78  Identities=19%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             CceEEEeCCCCcccccccc-------c------------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCC---
Q 034147           22 PRLVVFDLDYTLWPFYCEC-------C------------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRS---   73 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~-------~------------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~---   73 (103)
                      +-+|+||+||||++.....       .                  .......+++++.++|++++++|++++++||+   
T Consensus        63 p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~  142 (237)
T TIGR01672        63 PIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPG  142 (237)
T ss_pred             CeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            4489999999999965420       0                  11223356677999999999999999999998   


Q ss_pred             -CchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           74 -PAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        74 -~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                       .... ++..++++|+.++|  +.+++++.
T Consensus       143 k~~~~-a~~ll~~lGi~~~f--~~i~~~d~  169 (237)
T TIGR01672       143 KTDTV-SKTLAKNFHIPAMN--PVIFAGDK  169 (237)
T ss_pred             cCHHH-HHHHHHHhCCchhe--eEEECCCC
Confidence             4445 68888899999988  78887653

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.37  E-value=2.3e-12  Score=77.79  Aligned_cols=73  Identities=34%  Similarity=0.417  Sum_probs=57.2

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      +++||+||||++....... .....+++++.+++++|+++|++++++|++.... +...++.+++..++  +.+++.
T Consensus         1 ~~vfD~D~tl~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~~~~~~~~~~~--~~i~~~   73 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE-IEELELYPGVKEALKELKEKGIKLALATNKSRRE-VLELLEELGLDDYF--DPVITS   73 (139)
T ss_pred             CeEEccCCceEccCccccc-cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHHcCCchhh--hheecc
Confidence            4799999999985322111 2335789999999999999999999999999888 59999999986655  555543

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.37  E-value=1.8e-12  Score=87.35  Aligned_cols=53  Identities=8%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++|+||++... ++..++++++..+|. +.|++++
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~-~~~~l~~~gl~~~f~-d~ii~~~  150 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREM-MDVVAPEAALQGYRP-DYNVTTD  150 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHHHHhcCCCC-ceEEccc
Confidence            3678999999999999999999999999888 599999999988741 6777765

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PLN02645 phosphoglycolate phosphatase

Probab=99.36  E-value=2.6e-12  Score=89.30  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=54.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHHcCCCCccccCeee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~~~l~~~~~~~~i~   98 (103)
                      .+++++||+|||||+.          ..++||+.++|++|+++|++++++||++....  ....++++|+...+  +.|+
T Consensus        27 ~~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~--~~I~   94 (311)
T PLN02645         27 SVETFIFDCDGVIWKG----------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTE--EEIF   94 (311)
T ss_pred             hCCEEEEeCcCCeEeC----------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCCh--hhEe
Confidence            5889999999999972          35789999999999999999999999884431  13445778886555  7787


Q ss_pred             ecc
Q 034147           99 SCC  101 (103)
Q Consensus        99 ~~~  101 (103)
                      ++.
T Consensus        95 ts~   97 (311)
T PLN02645         95 SSS   97 (311)
T ss_pred             ehH
Confidence            763

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.36  E-value=1.9e-12  Score=83.04  Aligned_cols=50  Identities=32%  Similarity=0.469  Sum_probs=44.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++++||+  .. ++..++++++..+|  +.+++++
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~-~~~~l~~~~l~~~f--~~v~~~~  136 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KN-ADRILAKLGLTDYF--DAIVDAD  136 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hh-HHHHHHHcChHHHC--CEeeehh
Confidence            578999999999999999999999998  55 58889999999998  7887764

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.36  E-value=1.2e-12  Score=95.06  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|++|+++|++++|+||++... +...++++++.++|  +.+++++
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~-~~~~l~~~~l~~~f--~~i~~~d  380 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEY-LRAIVSYYDLDQWV--TETFSIE  380 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHHHCCcHhhc--ceeEecC
Confidence            35689999999999999999999999999988 69999999999999  8888765

>PLN02940 riboflavin kinase

Probab=99.35  E-value=1.5e-12  Score=92.67  Aligned_cols=53  Identities=25%  Similarity=0.327  Sum_probs=46.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH-HcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH-KLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~-~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|++|+++|++++|+||++... +...++ ++++..+|  +.+++++
T Consensus        91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~-~~~~l~~~~gl~~~F--d~ii~~d  144 (382)
T PLN02940         91 NIKALPGANRLIKHLKSHGVPMALASNSPRAN-IEAKISCHQGWKESF--SVIVGGD  144 (382)
T ss_pred             cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhccChHhhC--CEEEehh
Confidence            34688999999999999999999999999888 577776 78999999  8888875

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.35  E-value=2.3e-12  Score=84.86  Aligned_cols=74  Identities=34%  Similarity=0.275  Sum_probs=59.4

Q ss_pred             CCCCceEEEeCCCCccccccccc---------------------------------------------ccCCCcccChhH
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~---------------------------------------------~~~~~~~~~~g~   53 (103)
                      .+.+++++||+||||++.++...                                             .......++||+
T Consensus        11 ~~~~k~iiFD~DGTL~~~~~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   90 (219)
T TIGR00338        11 LRSKKLVVFDMDSTLINAETIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLKGLPVELLKEVRENLPLTEGA   90 (219)
T ss_pred             hccCCEEEEeCcccCCCchHHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCCCHHHHHHHHhcCCcCCCH
Confidence            34578999999999999653310                                             111334689999


Q ss_pred             HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      .++|+.|+++|++++|+||+.... +...++++++..+|.
T Consensus        91 ~~~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~~i~~~~~  129 (219)
T TIGR00338        91 EELVKTLKEKGYKVAVISGGFDLF-AEHVKDKLGLDAAFA  129 (219)
T ss_pred             HHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCceEe
Confidence            999999999999999999999777 699999999988774

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.35  E-value=2.6e-12  Score=83.30  Aligned_cols=45  Identities=29%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..++||+.++|+.|+++|++++|+|++.... ++..++++|+..+|
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~-~~~~l~~~g~~~~~  123 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCL-AKKVAEKLNPDYVY  123 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHhCCCeEE
Confidence            4678999999999999999999999999887 69999999987766

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.34  E-value=3.2e-12  Score=78.39  Aligned_cols=65  Identities=29%  Similarity=0.394  Sum_probs=51.5

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC--------chhHHHHHHHHcCCC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--------APDIAKTFLHKLGIH   89 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~--------~~~i~~~~l~~~~l~   89 (103)
                      |+++||+||||++. ..+........++|++.++|++|+++|++++++||++        ... .+..++++++.
T Consensus         1 k~~~~D~dgtL~~~-~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~-~~~~l~~~~l~   73 (132)
T TIGR01662         1 KGVVLDLDGTLTDD-VPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGR-VARRLEELGVP   73 (132)
T ss_pred             CEEEEeCCCceecC-CCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHH-HHHHHHHCCCC
Confidence            57999999999962 1111112234689999999999999999999999998        677 48889999985

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.32  E-value=5.2e-12  Score=85.83  Aligned_cols=53  Identities=9%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+.|+++|++++|+||++... +...++.+++..+|. +.|++++
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~-~~~~l~~~~l~~~~~-d~i~~~~  152 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREM-MDVVVPLAAAQGYRP-DHVVTTD  152 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHHhhcCCCc-eEEEcCC
Confidence            3578999999999999999999999999888 588899988877641 6777664

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=99.32  E-value=1e-11  Score=84.15  Aligned_cols=58  Identities=24%  Similarity=0.431  Sum_probs=50.5

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      +|++++|+||||++.      .   ..+.+...+.|++++++|++++++|||+... +...++.+++.
T Consensus         3 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   60 (270)
T PRK10513          3 IKLIAIDMDGTLLLP------D---HTISPAVKQAIAAARAKGVNVVLTTGRPYAG-VHRYLKELHME   60 (270)
T ss_pred             eEEEEEecCCcCcCC------C---CccCHHHHHHHHHHHHCCCEEEEecCCChHH-HHHHHHHhCCC
Confidence            689999999999972      1   2356889999999999999999999999998 58899999875

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=99.32  E-value=7.4e-12  Score=82.95  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=51.1

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|++++|+||||++.      .   ..+.|.+.+.|++++++|++++++|||+... +...++.+++..+
T Consensus         3 ~kli~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~   62 (230)
T PRK01158          3 IKAIAIDIDGTITDK------D---RRLSLKAVEAIRKAEKLGIPVILATGNVLCF-ARAAAKLIGTSGP   62 (230)
T ss_pred             eeEEEEecCCCcCCC------C---CccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCCc
Confidence            689999999999973      1   2355789999999999999999999999988 5888899988653

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.31  E-value=3.9e-12  Score=81.89  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|+ .++|++|+++ ++++|+||++... ++..++++++.++|  +.|++++
T Consensus        87 ~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~-~~~~l~~~~l~~~f--d~i~~~~  136 (188)
T PRK10725         87 VEPLPL-IEVVKAWHGR-RPMAVGTGSESAI-AEALLAHLGLRRYF--DAVVAAD  136 (188)
T ss_pred             CCCccH-HHHHHHHHhC-CCEEEEcCCchHH-HHHHHHhCCcHhHc--eEEEehh
Confidence            456775 5899999876 8999999999888 69999999999999  8888875

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.31  E-value=9.1e-12  Score=84.14  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=53.6

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCCCccccCeee
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      +++++||+||||++.          ..+.|++.++|++|+++|++++++||   ++... ....++.+|++...  +.|+
T Consensus         1 ~~~~~~D~DGtl~~~----------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~-~~~~l~~~g~~~~~--~~ii   67 (249)
T TIGR01457         1 YKGYLIDLDGTMYKG----------KERIPEAETFVHELQKRDIPYLFVTNNSTRTPES-VAEMLASFDIPATL--ETVF   67 (249)
T ss_pred             CCEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCCCh--hhEe
Confidence            468999999999973          34678999999999999999999997   45666 47778889986544  7777


Q ss_pred             ec
Q 034147           99 SC  100 (103)
Q Consensus        99 ~~  100 (103)
                      ++
T Consensus        68 t~   69 (249)
T TIGR01457        68 TA   69 (249)
T ss_pred             eH
Confidence            65

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=99.31  E-value=8.9e-12  Score=85.33  Aligned_cols=67  Identities=19%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHHcCCCCccccCeeee
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      +++++||+||||++.          ..++||+.++|++|+++|++++++||++....  ....++.+|+....  +.|++
T Consensus         2 ~~~~~~D~DGtl~~~----------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~--~~i~t   69 (279)
T TIGR01452         2 AQGFIFDCDGVLWLG----------ERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLA--EQLFS   69 (279)
T ss_pred             ccEEEEeCCCceEcC----------CeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCh--hhEec
Confidence            678999999999972          45789999999999999999999999764321  13467788886443  67776


Q ss_pred             c
Q 034147          100 C  100 (103)
Q Consensus       100 ~  100 (103)
                      +
T Consensus        70 s   70 (279)
T TIGR01452        70 S   70 (279)
T ss_pred             H
Confidence            5

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=99.30  E-value=1.1e-11  Score=83.97  Aligned_cols=59  Identities=22%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|++++|+||||++.      .   ..+.|...+.|++++++|++++++|||+... +...++.+++..
T Consensus         3 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   61 (272)
T PRK10530          3 YRVIALDLDGTLLTP------K---KTILPESLEALARAREAGYKVIIVTGRHHVA-IHPFYQALALDT   61 (272)
T ss_pred             ccEEEEeCCCceECC------C---CccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCC
Confidence            689999999999973      1   2356788999999999999999999999988 588899998764

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=99.30  E-value=1.2e-11  Score=81.53  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|++++|+||||++.         ...+.+...+.|++|+++|++++++|||+... +....+.+++..+
T Consensus         1 ik~v~~DlDGTLl~~---------~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~-~~~~~~~l~~~~~   60 (215)
T TIGR01487         1 IKLVAIDIDGTLTEP---------NRMISERAIEAIRKAEKKGIPVSLVTGNTVPF-ARALAVLIGTSGP   60 (215)
T ss_pred             CcEEEEecCCCcCCC---------CcccCHHHHHHHHHHHHCCCEEEEEcCCcchh-HHHHHHHhCCCCc
Confidence            478999999999972         12466899999999999999999999999988 5888999988643

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=99.30  E-value=1.2e-11  Score=84.13  Aligned_cols=60  Identities=25%  Similarity=0.328  Sum_probs=51.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|++++|+||||++.      .   ..+.+...+.|++++++|++++++|||+... +...++.+++..+
T Consensus         2 ~kli~~DlDGTLl~~------~---~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~   61 (272)
T PRK15126          2 ARLAAFDMDGTLLMP------D---HHLGEKTLSTLARLRERDITLTFATGRHVLE-MQHILGALSLDAY   61 (272)
T ss_pred             ccEEEEeCCCcCcCC------C---CcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCCCc
Confidence            689999999999973      1   2366889999999999999999999999988 5889999998654

>PRK10976 putative hydrolase; Provisional

Probab=99.30  E-value=1e-11  Score=84.04  Aligned_cols=60  Identities=33%  Similarity=0.359  Sum_probs=51.4

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|++++|+||||++.      .   ..+.+...+.|++++++|++++++|||+... +...++.+++..+
T Consensus         2 ikli~~DlDGTLl~~------~---~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~~   61 (266)
T PRK10976          2 YQVVASDLDGTLLSP------D---HTLSPYAKETLKLLTARGIHFVFATGRHHVD-VGQIRDNLEIKSY   61 (266)
T ss_pred             ceEEEEeCCCCCcCC------C---CcCCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHhcCCCCe
Confidence            689999999999973      1   2356789999999999999999999999988 5888999988643

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.29  E-value=9.5e-12  Score=77.88  Aligned_cols=66  Identities=20%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             ceEEEeCCCCcccccc-cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---------------hhHHHHHHHHc
Q 034147           23 RLVVFDLDYTLWPFYC-ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~-~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---------------~~i~~~~l~~~   86 (103)
                      ++++||+||||++..+ .+.......+++||+.++|+.|+++|++++|+||++.               .. +...++++
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGR-VLELLRQL   79 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHH-HHHHHHhC
Confidence            4689999999998653 1222223456899999999999999999999999874               34 36678888


Q ss_pred             CCC
Q 034147           87 GIH   89 (103)
Q Consensus        87 ~l~   89 (103)
                      ++.
T Consensus        80 ~l~   82 (147)
T TIGR01656        80 GVA   82 (147)
T ss_pred             CCc
Confidence            875

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.29  E-value=1.2e-11  Score=84.40  Aligned_cols=62  Identities=39%  Similarity=0.519  Sum_probs=52.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +++++++|+||||++.      .   ....+++.++|++|+++|++++++||++... +...++.+++..++
T Consensus         3 ~~kli~~DlDGTLl~~------~---~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~-~~~~~~~l~l~~~~   64 (273)
T PRK00192          3 MKLLVFTDLDGTLLDH------H---TYSYEPAKPALKALKEKGIPVIPCTSKTAAE-VEVLRKELGLEDPF   64 (273)
T ss_pred             cceEEEEcCcccCcCC------C---CcCcHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCCCE
Confidence            3789999999999973      1   2355789999999999999999999999888 58999999987543

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.29  E-value=9.9e-12  Score=84.33  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHHHHHHHcCCCCccccCeeee
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      .++++||+|||||+.      ......+.|++.+++++|+++|++++++||++...  .....++.+|++  +..+.|++
T Consensus         1 ~k~i~~D~DGtl~~~------~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~--~~~~~i~t   72 (257)
T TIGR01458         1 VKGVLLDISGVLYIS------DAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFD--ISEDEVFT   72 (257)
T ss_pred             CCEEEEeCCCeEEeC------CCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCC--CCHHHeEc
Confidence            368999999999973      11111278999999999999999999999887553  135667778875  34477776


Q ss_pred             c
Q 034147          100 C  100 (103)
Q Consensus       100 ~  100 (103)
                      +
T Consensus        73 s   73 (257)
T TIGR01458        73 P   73 (257)
T ss_pred             H
Confidence            5

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PLN02954 phosphoserine phosphatase

Probab=99.29  E-value=8.4e-12  Score=82.47  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=38.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ..++||+.++++.|+++|++++|+|++.... ++..++++|+.
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~~l~~~gi~  124 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQM-IAPVAAILGIP  124 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHhCCC
Confidence            4588999999999999999999999999888 69999999986

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.28  E-value=1.8e-11  Score=78.92  Aligned_cols=54  Identities=17%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      ++|+++||.||||.-....+........++||+.++|++|+++|++++|+||++
T Consensus         2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~   55 (181)
T PRK08942          2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS   55 (181)
T ss_pred             CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence            578999999999875432333334456799999999999999999999999886

>TIGR01686 FkbH FkbH-like domain

Probab=99.27  E-value=1.5e-11  Score=85.70  Aligned_cols=71  Identities=25%  Similarity=0.313  Sum_probs=56.4

Q ss_pred             CCceEEEeCCCCccccccccc--ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH----cCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECC--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~--~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~----~~l~~~~   92 (103)
                      .+|++++|+|+|||.+-..-+  .......+++++.++|+.|+++|++++|+|+++... +...+++    +++.++|
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~-a~~~l~~~~~~~~~~~~f   78 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDD-AKKVFERRKDFILQAEDF   78 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHH-HHHHHHhCccccCcHHHe
Confidence            479999999999998531100  111223468999999999999999999999999887 7999999    8888777

The C-terminal portion of this domain is unique to this family (by BLAST).

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.27  E-value=1.9e-11  Score=84.02  Aligned_cols=61  Identities=25%  Similarity=0.283  Sum_probs=51.8

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +|+|++|+||||+++.         ...++.+.+.|++|+++|++++++||++... +..+.+.+++..+|
T Consensus         1 ~KLIftDLDGTLLd~~---------~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~e-v~~l~~~Lgl~~p~   61 (302)
T PRK12702          1 MRLVLSSLDGSLLDLE---------FNSYGAARQALAALERRSIPLVLYSLRTRAQ-LEHLCRQLRLEHPF   61 (302)
T ss_pred             CcEEEEeCCCCCcCCC---------CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCCeE
Confidence            4789999999999841         2345779999999999999999999999999 49999999987543

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.27  E-value=3.3e-11  Score=77.08  Aligned_cols=67  Identities=24%  Similarity=0.340  Sum_probs=50.3

Q ss_pred             CceEEEeCCCCccccccc--ccccCCCcc-cChhHHHHHHHHHHCCCeEEEEeCCCch------------hHHHHHHHHc
Q 034147           22 PRLVVFDLDYTLWPFYCE--CCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAP------------DIAKTFLHKL   86 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~--~~~~~~~~~-~~~g~~~~l~~l~~~G~~v~i~T~~~~~------------~i~~~~l~~~   86 (103)
                      .++++||+||||+...+.  +.......+ ++||+.++|++|+++|++++|+||++..            . +...++++
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~-i~~~l~~~   91 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNK-IEAFLEKL   91 (166)
T ss_pred             CcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHH-HHHHHHHc
Confidence            688999999999974321  011111222 6899999999999999999999998753            3 36788999


Q ss_pred             CCC
Q 034147           87 GIH   89 (103)
Q Consensus        87 ~l~   89 (103)
                      |+.
T Consensus        92 gl~   94 (166)
T TIGR01664        92 KVP   94 (166)
T ss_pred             CCC
Confidence            984

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PRK09449 dUMP phosphatase; Provisional

Probab=99.25  E-value=1.3e-11  Score=81.56  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=45.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+ +|++++|+||++... ++..++++|+..+|  +.+++++
T Consensus        94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~v~~~~  144 (224)
T PRK09449         94 CTPLPGAVELLNALR-GKVKMGIITNGFTEL-QQVRLERTGLRDYF--DLLVISE  144 (224)
T ss_pred             CccCccHHHHHHHHH-hCCeEEEEeCCcHHH-HHHHHHhCChHHHc--CEEEEEC
Confidence            358899999999999 579999999999877 68889999999999  8888775

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.25  E-value=3.2e-11  Score=82.16  Aligned_cols=60  Identities=28%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      +.++++++|+||||++.      .   ....+...+.|++++++|++++++|||+... +...++.+++.
T Consensus         5 ~~~~lI~~DlDGTLL~~------~---~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~-i~~~~~~l~~~   64 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDS------H---TYDWQPAAPWLTRLREAQVPVILCSSKTAAE-MLPLQQTLGLQ   64 (271)
T ss_pred             CCCeEEEEeCccCCcCC------C---CcCcHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHhCCC
Confidence            56899999999999972      1   1245678999999999999999999999988 59999999985

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=99.24  E-value=3.3e-11  Score=81.55  Aligned_cols=60  Identities=37%  Similarity=0.624  Sum_probs=52.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++++++|+||||++.      ..   .+.+.+.++|++++++|++++++|||+... +...++.+++..
T Consensus         2 ~~kli~~DlDGTLl~~------~~---~i~~~~~~al~~~~~~g~~v~iaTGR~~~~-~~~~~~~l~~~~   61 (264)
T COG0561           2 MIKLLAFDLDGTLLDS------NK---TISPETKEALARLREKGVKVVLATGRPLPD-VLSILEELGLDG   61 (264)
T ss_pred             CeeEEEEcCCCCccCC------CC---ccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCc
Confidence            4789999999999973      22   266889999999999999999999999988 699999999875

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.24  E-value=2e-11  Score=78.25  Aligned_cols=49  Identities=35%  Similarity=0.470  Sum_probs=42.2

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|++|+++|++++|+|++..   ....++++++..+|  +.+++++
T Consensus        87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~---~~~~l~~~~l~~~f--~~~~~~~  135 (185)
T TIGR01990        87 DVLPGIKNLLDDLKKNNIKIALASASKN---APTVLEKLGLIDYF--DAIVDPA  135 (185)
T ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCcc---HHHHHHhcCcHhhC--cEEEehh
Confidence            6789999999999999999999998753   35679999999999  8887765

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=99.24  E-value=2.3e-11  Score=82.96  Aligned_cols=70  Identities=20%  Similarity=0.126  Sum_probs=52.5

Q ss_pred             CCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHH-cCCCCccccC
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHK-LGIHSMFVPM   95 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~-~~l~~~~~~~   95 (103)
                      ...+++++||+||||+.          ...++||+.++|++|+++|++++++||++...-  ....++. .+.+...  +
T Consensus         5 ~~~y~~~l~DlDGvl~~----------G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~--~   72 (269)
T COG0647           5 MDKYDGFLFDLDGVLYR----------GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTP--D   72 (269)
T ss_pred             hhhcCEEEEcCcCceEe----------CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCH--H
Confidence            34688999999999998          466899999999999999999999998885441  1334444 3333333  6


Q ss_pred             eeeec
Q 034147           96 VRLSC  100 (103)
Q Consensus        96 ~i~~~  100 (103)
                      .|+++
T Consensus        73 ~i~TS   77 (269)
T COG0647          73 DIVTS   77 (269)
T ss_pred             HeecH
Confidence            66664

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.24  E-value=3.7e-11  Score=78.33  Aligned_cols=50  Identities=26%  Similarity=0.472  Sum_probs=43.1

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|++|+++|++++|+||++. . ....++++++..+|  +.+++++
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~-~-~~~~l~~~~l~~~f--d~i~~s~  154 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDS-R-LRGLLEALGLLEYF--DFVVTSY  154 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCch-h-HHHHHHHCCcHHhc--ceEEeec
Confidence            4689999999999999999999999875 4 37789999998899  8887764

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.24  E-value=2e-11  Score=78.30  Aligned_cols=52  Identities=23%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++++.|+++|++++|+|++.... ++..++++++.++|  +.+++++
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~i~~~~  122 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFF-IDPVLEGIGEKDVF--IEIYSNP  122 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHHcCChhhe--eEEeccC
Confidence            4688999999999999999999999999888 59999999999888  7888654

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PRK10444 UMP phosphatase; Provisional

Probab=99.24  E-value=3.3e-11  Score=81.49  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHH---HHHHcCCCCccccCeee
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT---FLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~---~l~~~~l~~~~~~~~i~   98 (103)
                      +++++||+|||||+.          ..+.|++.+++++|+++|++++++||++... ...   .++.+|++-  ..+.|+
T Consensus         1 ~~~v~~DlDGtL~~~----------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~-~~~~~~~l~~~G~~~--~~~~i~   67 (248)
T PRK10444          1 IKNVICDIDGVLMHD----------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQT-GQDLANRFATAGVDV--PDSVFY   67 (248)
T ss_pred             CcEEEEeCCCceEeC----------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHHHHHHHcCCCC--CHhhEe
Confidence            478999999999973          2578999999999999999999999998754 244   445567642  336666


Q ss_pred             ec
Q 034147           99 SC  100 (103)
Q Consensus        99 ~~  100 (103)
                      ++
T Consensus        68 ts   69 (248)
T PRK10444         68 TS   69 (248)
T ss_pred             cH
Confidence            65

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.23  E-value=1.1e-11  Score=77.97  Aligned_cols=54  Identities=28%  Similarity=0.418  Sum_probs=48.9

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...+++||+.++|+.|+++|++++++||++... +...++++++..+|  +.+++++
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~-~~~~l~~~~~~~~f--~~i~~~~  127 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRER-IERVLERLGLDDYF--DEIISSD  127 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHH-HHHHHHHTTHGGGC--SEEEEGG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCccc-cccccccccccccc--ccccccc
Confidence            567899999999999999999999999999887 58999999999888  8888775

...

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.23  E-value=2.8e-11  Score=78.80  Aligned_cols=47  Identities=30%  Similarity=0.418  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           53 AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        53 ~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|+.|+++|++++|+||++... +...++++|+..+|  +.+++++.
T Consensus       111 ~~~~L~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f--~~~~~~~~  157 (197)
T TIGR01548       111 PKGLLRELHRAPKGMAVVTGRPRKD-AAKFLTTHGLEILF--PVQIWMED  157 (197)
T ss_pred             HHHHHHHHHHcCCcEEEECCCCHHH-HHHHHHHcCchhhC--CEEEeecC
Confidence            4889999999999999999999888 69999999999999  88887653

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.23  E-value=2.4e-11  Score=76.77  Aligned_cols=68  Identities=21%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CceEEEeCCCCcccccccccccCCCc---ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIP---YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~---~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +++++||+||||++........++..   .+.++  .++++|+++|++++|+||++... +...++++|+..+|
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~-~~~~l~~~gi~~~~   71 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKL-VEDRCKTLGITHLY   71 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHH-HHHHHHHcCCCEEE
Confidence            47899999999998432111111111   12233  38999999999999999999888 69999999998776

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.22  E-value=2.9e-11  Score=79.54  Aligned_cols=51  Identities=20%  Similarity=0.244  Sum_probs=45.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++ ++++++||+.... ++..++++++..+|  +.+++++
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~-~~~~l~~~~l~~~f--d~i~~~~  146 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGVRET-QYKRLRKSGLFPFF--DDIFVSE  146 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCchHH-HHHHHHHCCcHhhc--CEEEEcC
Confidence            46889999999999999 9999999999888 59999999999999  8888765

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.22  E-value=3.9e-11  Score=76.44  Aligned_cols=66  Identities=17%  Similarity=0.020  Sum_probs=51.0

Q ss_pred             ceEEEeCCCCcccccc--cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---------------chhHHHHHHHH
Q 034147           23 RLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLHK   85 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~--~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---------------~~~i~~~~l~~   85 (103)
                      ++++||.||||++..+  ..........++||+.++|++|+++|++++|+||++               ... +...+++
T Consensus         2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~-~~~~l~~   80 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNL-MLQIFRS   80 (161)
T ss_pred             CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHH-HHHHHHH
Confidence            6799999999998322  111222345789999999999999999999999973               334 4778899


Q ss_pred             cCCC
Q 034147           86 LGIH   89 (103)
Q Consensus        86 ~~l~   89 (103)
                      +|+.
T Consensus        81 ~gl~   84 (161)
T TIGR01261        81 QGII   84 (161)
T ss_pred             CCCc
Confidence            9985

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.22  E-value=6.1e-11  Score=76.20  Aligned_cols=52  Identities=15%  Similarity=0.077  Sum_probs=42.1

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ++++||.||||+... .+........++||+.++|++|+++|++++|+||++.
T Consensus         2 ~~~~~D~Dgtl~~~~-~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~   53 (176)
T TIGR00213         2 KAIFLDRDGTINIDH-GYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQSG   53 (176)
T ss_pred             CEEEEeCCCCEeCCC-CCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            679999999999522 1122334567899999999999999999999999984

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=99.20  E-value=6.1e-11  Score=79.09  Aligned_cols=56  Identities=29%  Similarity=0.423  Sum_probs=47.7

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +++||+||||++.          ....+++.++|++++++|++++++||++... +...++.+++..
T Consensus         1 li~~DlDGTLl~~----------~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~-~~~~~~~lg~~~   56 (225)
T TIGR02461         1 VIFTDLDGTLLPP----------GYEPGPAREALEELKDLGFPIVFVSSKTRAE-QEYYREELGVEP   56 (225)
T ss_pred             CEEEeCCCCCcCC----------CCCchHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCC
Confidence            4899999999962          1244679999999999999999999999888 588899999754

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.19  E-value=6.8e-11  Score=75.87  Aligned_cols=72  Identities=17%  Similarity=0.071  Sum_probs=58.7

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||+|+...++..+...+-| ..-...++.|+++|++++|+||++... ++..++++++..+|
T Consensus         5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~-~~~~l~~lgi~~~f   77 (169)
T TIGR02726         5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGA-VRHRAEELKIKRFH   77 (169)
T ss_pred             ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHH-HHHHHHHCCCcEEE
Confidence            4589999999999999866666666544333 223457899999999999999999888 69999999998777

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=99.18  E-value=5.1e-11  Score=74.85  Aligned_cols=72  Identities=19%  Similarity=0.214  Sum_probs=60.0

Q ss_pred             CCCCceEEEeCCCCcccccccccccCCCcccChhHH--HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAK--GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~--~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++|+++||+||||+|+..++...++..+.|. +.  ..++.|.+.|++++|+|++..+. ++.+.+.+|+.+++
T Consensus         5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFn-v~DG~Gik~l~~~Gi~vAIITGr~s~i-ve~Ra~~LGI~~~~   78 (170)
T COG1778           5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFN-VRDGHGIKLLLKSGIKVAIITGRDSPI-VEKRAKDLGIKHLY   78 (170)
T ss_pred             hhhceEEEEeccceeecCeEEEcCCCceeeeee-ccCcHHHHHHHHcCCeEEEEeCCCCHH-HHHHHHHcCCceee
Confidence            457899999999999998887777666665552 22  37899999999999999999888 69999999998766

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.17  E-value=2.7e-10  Score=71.44  Aligned_cols=76  Identities=18%  Similarity=0.047  Sum_probs=57.4

Q ss_pred             CceEEEeCCCCccccccc----ccc-------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           22 PRLVVFDLDYTLWPFYCE----CCY-------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~----~~~-------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      ..++++|+||||+.....    +..             ......++||+.++|++|+ ++++++|+|++.... ++..++
T Consensus         2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~-~~~il~   79 (148)
T smart00577        2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMY-ADPVLD   79 (148)
T ss_pred             CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHH-HHHHHH
Confidence            356899999999985311    100             0122357899999999999 579999999999988 699999


Q ss_pred             HcCCCC-ccccCeeeecc
Q 034147           85 KLGIHS-MFVPMVRLSCC  101 (103)
Q Consensus        85 ~~~l~~-~~~~~~i~~~~  101 (103)
                      ++++.. +|  +.|++++
T Consensus        80 ~l~~~~~~f--~~i~~~~   95 (148)
T smart00577       80 LLDPKKYFG--YRRLFRD   95 (148)
T ss_pred             HhCcCCCEe--eeEEECc
Confidence            999854 45  6777765

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.16  E-value=7.2e-11  Score=73.84  Aligned_cols=52  Identities=25%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....+||+.++|+.|+++|++++|+||++... +...++++ +..+|  +.+++++
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~-l~~~f--~~i~~~~  113 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRA-QKLLLRKH-LGDYF--DLILGSD  113 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHH-HHHHHHHH-HHhcC--cEEEecC
Confidence            34467999999999999999999999999888 58888887 77777  6777654

HAD subfamilies caused by an overly broad single model.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=99.16  E-value=1.3e-10  Score=78.42  Aligned_cols=57  Identities=37%  Similarity=0.573  Sum_probs=48.6

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++++|+||||++.      .   ..+.+...+.|++++++|++++++|||+... +...++.+++..
T Consensus         1 li~~DlDGTLl~~------~---~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~   57 (256)
T TIGR00099         1 LIFIDLDGTLLND------D---HTISPSTKEALAKLREKGIKVVLATGRPYKE-VKNILKELGLDT   57 (256)
T ss_pred             CEEEeCCCCCCCC------C---CccCHHHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHcCCCC
Confidence            4789999999972      1   2356889999999999999999999999888 588899998863

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.15  E-value=9.1e-11  Score=74.85  Aligned_cols=51  Identities=25%  Similarity=0.449  Sum_probs=42.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++++||++...  .....++++..+|  +.+++++
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~--~~~~~~~~l~~~f--~~i~~~~  134 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH--AVLVQELGLRDLF--DVVIFSG  134 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH--HHHHHhcCCHHHC--CEEEEcC
Confidence            5688999999999999999999999999654  4445569998888  8877654

HAD subfamilies caused by an overly broad single model.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.15  E-value=1e-10  Score=77.43  Aligned_cols=44  Identities=20%  Similarity=0.118  Sum_probs=38.4

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ....++||+.++|+.|+++|++++|+|++.... ++..++++ +..
T Consensus        71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~-~~~  114 (219)
T PRK09552         71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFF-VYPLLQGL-IPK  114 (219)
T ss_pred             hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHH-HHHHHHHh-CCc
Confidence            345789999999999999999999999999887 59999987 643

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.15  E-value=5.8e-11  Score=78.67  Aligned_cols=46  Identities=26%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      .+++||+.++++.++++|++++|+|+++... ++++.+.+|++..+.
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~l-v~~ia~~lg~d~~~a  121 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFL-VEPIAERLGIDYVVA  121 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHH-HHHHHHHhCCchhee
Confidence            6789999999999999999999999999776 799999999987653

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=99.15  E-value=1.1e-10  Score=76.96  Aligned_cols=56  Identities=18%  Similarity=0.186  Sum_probs=47.1

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++||+||||++.      .   ..+.+...+.|++++++|++++++|||+... +...++.+++..
T Consensus         1 i~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~-~~~~~~~l~~~~   56 (225)
T TIGR01482         1 IASDIDGTLTDP------N---RAINESALEAIRKAESVGIPVVLVTGNSVQF-ARALAKLIGTPD   56 (225)
T ss_pred             CeEeccCccCCC------C---cccCHHHHHHHHHHHHCCCEEEEEcCCchHH-HHHHHHHhCCCC
Confidence            589999999973      1   2356788999999999999999999999988 588889888654

catalyze the same reaction as SPP.

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=99.14  E-value=1.1e-10  Score=74.42  Aligned_cols=47  Identities=30%  Similarity=0.385  Sum_probs=41.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      ...++||+.+++++++++|++++|+|++.... ++..++++|+..++.
T Consensus        71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-i~~~~~~~g~~~~~~  117 (177)
T TIGR01488        71 QVALRPGARELISWLKERGIDTVIVSGGFDFF-VEPVAEKLGIDDVFA  117 (177)
T ss_pred             cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCchhee
Confidence            34578999999999999999999999999887 599999999987653

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=99.14  E-value=6.1e-10  Score=68.29  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=47.6

Q ss_pred             ceEEEeCCCCcccccccccccC--CCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--------------HHHHHHHHc
Q 034147           23 RLVVFDLDYTLWPFYCECCYED--EIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAKTFLHKL   86 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~--~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--------------i~~~~l~~~   86 (103)
                      |+++||+||||...     ..+  ....+.+++.+.+++++++|+.++++|||+...              ++..++.+.
T Consensus         2 K~i~~DiDGTL~~~-----~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~   76 (126)
T TIGR01689         2 KRLVMDLDNTITLT-----ENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQH   76 (126)
T ss_pred             CEEEEeCCCCcccC-----CCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHc
Confidence            68999999999862     111  123477899999999999999999999998653              246777777


Q ss_pred             CCC
Q 034147           87 GIH   89 (103)
Q Consensus        87 ~l~   89 (103)
                      +++
T Consensus        77 ~ip   79 (126)
T TIGR01689        77 NVP   79 (126)
T ss_pred             CCC
Confidence            764

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=99.14  E-value=1.5e-10  Score=76.61  Aligned_cols=56  Identities=32%  Similarity=0.463  Sum_probs=48.4

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +++|+||||++.      .   ..+.+...++|++++++|++++++|||+... +...++.+++..
T Consensus         1 i~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~~~~   56 (254)
T PF08282_consen    1 IFSDLDGTLLNS------D---GKISPETIEALKELQEKGIKLVIATGRSYSS-IKRLLKELGIDD   56 (254)
T ss_dssp             EEEECCTTTCST------T---SSSCHHHHHHHHHHHHTTCEEEEECSSTHHH-HHHHHHHTTHCS
T ss_pred             cEEEECCceecC------C---CeeCHHHHHHHHhhcccceEEEEEccCcccc-cccccccccchh
Confidence            689999999973      2   2266899999999999999999999999988 599999998763

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=99.13  E-value=1.9e-10  Score=75.97  Aligned_cols=56  Identities=30%  Similarity=0.383  Sum_probs=46.9

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ++++|+||||++.      ..   ...+...++|++++++|++++++|||+... +...++.+++.
T Consensus         1 ~i~~DlDGTLL~~------~~---~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~-~~~~~~~l~~~   56 (221)
T TIGR02463         1 WVFSDLDGTLLDS------HS---YDWQPAAPWLTRLQEAGIPVILCTSKTAAE-VEYLQKALGLT   56 (221)
T ss_pred             CEEEeCCCCCcCC------CC---CCcHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCC
Confidence            4789999999973      11   133448899999999999999999999988 59999999986

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.13  E-value=8.9e-11  Score=77.28  Aligned_cols=47  Identities=15%  Similarity=0.171  Sum_probs=41.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM   95 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~   95 (103)
                      .+++||+.+++++++++| +++|+||+.... ++..++++|++.+|+++
T Consensus        67 i~l~pga~ell~~lk~~~-~~~IVS~~~~~~-~~~il~~lgi~~~~an~  113 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERF-QVVILSDTFYEF-SQPLMRQLGFPTLLCHK  113 (203)
T ss_pred             CCCCccHHHHHHHHHhCC-eEEEEeCChHHH-HHHHHHHcCCchhhcee
Confidence            468999999999999985 999999999887 69999999998887643

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>PRK06769 hypothetical protein; Validated

Probab=99.13  E-value=2e-10  Score=73.76  Aligned_cols=70  Identities=20%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch--------hHHHHHHHHcCCCCc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------DIAKTFLHKLGIHSM   91 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--------~i~~~~l~~~~l~~~   91 (103)
                      +.++++++|.||||... ..+. ......++||+.++|++|+++|++++|+||++..        . ....++.+++..+
T Consensus         2 ~~~~~~~~d~d~~~~~~-~~~~-~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~-~~~~l~~~g~~~~   78 (173)
T PRK06769          2 TNIQAIFIDRDGTIGGD-TTIH-YPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIAD-FVQELKGFGFDDI   78 (173)
T ss_pred             CCCcEEEEeCCCcccCC-CCCC-CHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHH-HHHHHHhCCcCEE
Confidence            46899999999999532 1111 1134568999999999999999999999998731        2 1334677777665


Q ss_pred             c
Q 034147           92 F   92 (103)
Q Consensus        92 ~   92 (103)
                      +
T Consensus        79 ~   79 (173)
T PRK06769         79 Y   79 (173)
T ss_pred             E
Confidence            4

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.13  E-value=1.1e-10  Score=75.11  Aligned_cols=49  Identities=18%  Similarity=0.170  Sum_probs=42.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..+++|+.++|++|+   .+++|+||++... +...++++|+.++|  +.+++++
T Consensus        83 ~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~-~~~~l~~~gl~~~f--d~i~~~~  131 (184)
T TIGR01993        83 LKPDPELRNLLLRLP---GRKIIFTNGDRAH-ARRALNRLGIEDCF--DGIFCFD  131 (184)
T ss_pred             CCCCHHHHHHHHhCC---CCEEEEeCCCHHH-HHHHHHHcCcHhhh--CeEEEee
Confidence            457899999999997   4799999999888 59999999999999  8888775

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PTZ00174 phosphomannomutase; Provisional

Probab=99.13  E-value=2.3e-10  Score=77.10  Aligned_cols=55  Identities=31%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~   85 (103)
                      .++++++|+||||++.      .   ..+.|...++|++++++|++++++|||+...+ ...++.
T Consensus         4 ~~klia~DlDGTLL~~------~---~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i-~~~l~~   58 (247)
T PTZ00174          4 KKTILLFDVDGTLTKP------R---NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKI-KEQLGE   58 (247)
T ss_pred             CCeEEEEECcCCCcCC------C---CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHhh
Confidence            3789999999999973      2   23557889999999999999999999998874 665553

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.12  E-value=1.1e-10  Score=77.02  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=41.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccC-eeeec
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM-VRLSC  100 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~-~i~~~  100 (103)
                      ...++||+.++|+.|   +++++|+||++... ++..++++++.++|  + .++++
T Consensus        86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~-~~~~l~~~~l~~~F--~~~v~~~  135 (221)
T PRK10563         86 ELEPIAGANALLESI---TVPMCVVSNGPVSK-MQHSLGKTGMLHYF--PDKLFSG  135 (221)
T ss_pred             cCCcCCCHHHHHHHc---CCCEEEEeCCcHHH-HHHHHHhcChHHhC--cceEeeH
Confidence            356889999999998   48999999999887 59999999999998  5 46565

>PLN02887 hydrolase family protein

Probab=99.12  E-value=2.4e-10  Score=85.12  Aligned_cols=60  Identities=17%  Similarity=0.229  Sum_probs=51.5

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++|++++|+||||++.      .   ..+.+...+.|++++++|+.++++|||+... +...++.+++.
T Consensus       306 ~~iKLIa~DLDGTLLn~------d---~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~-i~~~l~~L~l~  365 (580)
T PLN02887        306 PKFSYIFCDMDGTLLNS------K---SQISETNAKALKEALSRGVKVVIATGKARPA-VIDILKMVDLA  365 (580)
T ss_pred             cCccEEEEeCCCCCCCC------C---CccCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHhCcc
Confidence            46899999999999973      1   2366889999999999999999999999988 58888988864

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.11  E-value=1.4e-10  Score=75.56  Aligned_cols=47  Identities=23%  Similarity=0.303  Sum_probs=41.3

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      ....++||+.++|+.|+++ ++++|+|++.... ++..++++++..+|.
T Consensus        65 ~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~-~~~~l~~~gl~~~f~  111 (205)
T PRK13582         65 ATLDPLPGAVEFLDWLRER-FQVVILSDTFYEF-AGPLMRQLGWPTLFC  111 (205)
T ss_pred             HhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHH-HHHHHHHcCCchhhc
Confidence            3445789999999999999 9999999999888 699999999987774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=2.4e-10  Score=89.97  Aligned_cols=50  Identities=32%  Similarity=0.377  Sum_probs=45.0

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC-CccccCeeeecc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH-SMFVPMVRLSCC  101 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~-~~~~~~~i~~~~  101 (103)
                      ++||+.++|++|+++|++++|+||+.... ++..++++++. .+|  +.+++++
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~-~~~~L~~~gl~~~~F--d~iv~~~  212 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIK-VDANLAAAGLPLSMF--DAIVSAD  212 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHHcCCChhHC--CEEEECc
Confidence            68999999999999999999999999888 58999999996 678  8888775

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.10  E-value=1.6e-10  Score=75.14  Aligned_cols=46  Identities=26%  Similarity=0.361  Sum_probs=41.1

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~   94 (103)
                      .++|++.+++++++++|++++|+|+++... ++..++++|+..+|..
T Consensus        87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~-v~~~~~~lg~~~~~~~  132 (202)
T TIGR01490        87 ILYPEARDLIRWHKAEGHTIVLVSASLTIL-VKPLARILGIDNAIGT  132 (202)
T ss_pred             hccHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCcceEec
Confidence            578999999999999999999999999877 6999999999877643

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PRK11590 hypothetical protein; Provisional

Probab=99.10  E-value=3.1e-10  Score=74.88  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=35.5

Q ss_pred             ccChhHHHHH-HHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           48 YLYPHAKGIL-EALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        48 ~~~~g~~~~l-~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      .++||+.+.| ++++++|++++|+||++... ++..++.+++
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~-~~~il~~l~~  135 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQPL-VEQVYFDTPW  135 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHccc
Confidence            4689999999 57888999999999999877 6999999885

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=99.09  E-value=3.5e-10  Score=76.39  Aligned_cols=57  Identities=32%  Similarity=0.420  Sum_probs=47.4

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++++|+||||++.      ..   ...+...+++++++++|++++++|||+... +...++.+++..
T Consensus         1 li~~DlDGTll~~------~~---~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~-~~~~~~~~~~~~   57 (256)
T TIGR01486         1 WIFTDLDGTLLDP------HG---YDWGPAKEVLERLQELGIPVIPCTSKTAAE-VEYLRKELGLED   57 (256)
T ss_pred             CEEEcCCCCCcCC------CC---cCchHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCC
Confidence            4789999999973      11   133468999999999999999999999988 599999999854

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.08  E-value=3e-10  Score=74.51  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=40.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhH-HHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDI-AKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i-~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|++|+++|++++|+||+..... ....+..+++..+|  +.+++++
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~f--d~v~~s~  146 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALF--DAVVESC  146 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhC--CEEEEee
Confidence            356899999999999999999999999874321 12234456777888  7777654

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.08  E-value=3.1e-10  Score=73.51  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccCh-hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~-g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||++..............+. .-...++.|+++|++++|+||++... +...++++++..+|
T Consensus        19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~-v~~~l~~lgl~~~f   91 (183)
T PRK09484         19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKL-VEDRMTTLGITHLY   91 (183)
T ss_pred             hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCceee
Confidence            35999999999999985221111121121111 11257889999999999999999888 69999999998776

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.07  E-value=2.6e-10  Score=79.74  Aligned_cols=46  Identities=24%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+++||+.++++.|++.|++++|+||+.... ++...+++++...+
T Consensus       179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~-~~~l~~~Lgld~~~  224 (322)
T PRK11133        179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYF-ADYLRDKLRLDAAV  224 (322)
T ss_pred             hCCCChhHHHHHHHHHHcCCEEEEEECCcchh-HHHHHHHcCCCeEE
Confidence            35689999999999999999999999999877 68888999987644

>PHA02597 30

Probab=99.07  E-value=2.9e-10  Score=73.90  Aligned_cols=53  Identities=15%  Similarity=0.179  Sum_probs=37.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc--cCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV--PMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~--~~~i~~~~  101 (103)
                      ..++||+.++|++|++++ +++++|+++... .....+.+++..+|.  .+.+++++
T Consensus        73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~-~~~~~~~~~l~~~f~~~f~~i~~~~  127 (197)
T PHA02597         73 LSAYDDALDVINKLKEDY-DFVAVTALGDSI-DALLNRQFNLNALFPGAFSEVLMCG  127 (197)
T ss_pred             ccCCCCHHHHHHHHHhcC-CEEEEeCCccch-hHHHHhhCCHHHhCCCcccEEEEec
Confidence            468999999999999974 677788877555 355667787765441  14555543

2 hypothetical protein; Provisional

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=99.05  E-value=1.6e-09  Score=73.94  Aligned_cols=74  Identities=26%  Similarity=0.336  Sum_probs=63.0

Q ss_pred             cCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCee
Q 034147           18 FENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        18 ~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      .-..+.+++||+|.||+.      +.+....+.|.+.+.|..|++.|..+++.|.++++. +...++.+++.++|  +.|
T Consensus       118 ~~~~phVIVfDlD~TLIt------d~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH-V~~sl~~~~L~~~F--d~i  188 (297)
T PF05152_consen  118 VWEPPHVIVFDLDSTLIT------DEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREH-VRHSLKELKLEGYF--DII  188 (297)
T ss_pred             cCCCCcEEEEECCCcccc------cCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHH-HHHHHHHhCCcccc--EEE
Confidence            344689999999999996      334334467889999999999999999999999999 69999999999999  888


Q ss_pred             eec
Q 034147           98 LSC  100 (103)
Q Consensus        98 ~~~  100 (103)
                      +++
T Consensus       189 i~~  191 (297)
T PF05152_consen  189 ICG  191 (297)
T ss_pred             EeC
Confidence            775

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.05  E-value=4.7e-10  Score=73.99  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=45.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.+.|+.++++ ++++++||+.... ....++++|+.++|  +.+++++
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~-~~~~l~~~gl~~~F--d~v~~s~  148 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGARPH-QERKLRQLGLLDYF--DAVFISE  148 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCChHH-HHHHHHHcCChhhh--heEEEec
Confidence            57889999999999998 9999999988777 69999999999999  8888775

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=99.04  E-value=7.3e-10  Score=83.35  Aligned_cols=62  Identities=27%  Similarity=0.376  Sum_probs=51.3

Q ss_pred             CCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ...++++++|+||||++.      ..   ...+...+.|++++++|++++++||++... +...++.+++..
T Consensus       413 ~~~~KLIfsDLDGTLLd~------d~---~i~~~t~eAL~~L~ekGI~~VIATGRs~~~-i~~l~~~Lgl~~  474 (694)
T PRK14502        413 GQFKKIVYTDLDGTLLNP------LT---YSYSTALDALRLLKDKELPLVFCSAKTMGE-QDLYRNELGIKD  474 (694)
T ss_pred             CceeeEEEEECcCCCcCC------CC---ccCHHHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCCC
Confidence            345789999999999973      11   244668999999999999999999999988 588999998754

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.04  E-value=5e-10  Score=77.06  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=61.0

Q ss_pred             CCceEEEeCCCCcccccc----cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC-ccccC
Q 034147           21 LPRLVVFDLDYTLWPFYC----ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MFVPM   95 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~----~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~-~~~~~   95 (103)
                      ..+++++|+|||+.+...    .|.. .....++|++.++++.|+++|++++++||++... ++..++.+++.+ +|  +
T Consensus       157 ~~~~~~~D~dgtl~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~-~~~~l~~l~~~~~~f--~  232 (300)
T PHA02530        157 LPKAVIFDIDGTLAKMGGRSPYDWTK-VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC-EEDTVEWLRQTDIWF--D  232 (300)
T ss_pred             CCCEEEEECCCcCcCCCCCCccchhh-cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh-HHHHHHHHHHcCCch--h
Confidence            367899999999997422    1111 1135689999999999999999999999999888 699999999886 77  6


Q ss_pred             eeeecc
Q 034147           96 VRLSCC  101 (103)
Q Consensus        96 ~i~~~~  101 (103)
                      .+++.+
T Consensus       233 ~i~~~~  238 (300)
T PHA02530        233 DLIGRP  238 (300)
T ss_pred             hhhCCc
Confidence            666654

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.03  E-value=2.8e-09  Score=71.76  Aligned_cols=78  Identities=19%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             CceEEEeCCCCccccccc--c----------------------c-ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC--
Q 034147           22 PRLVVFDLDYTLWPFYCE--C----------------------C-YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP--   74 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~--~----------------------~-~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~--   74 (103)
                      +-.++||+|||+++...+  +                      . .......++||+.++|++|+++|++++++|||+  
T Consensus        63 p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~  142 (237)
T PRK11009         63 PMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTAT  142 (237)
T ss_pred             CcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            457999999999973111  0                      0 012346688999999999999999999999975  


Q ss_pred             -chhHHHHHHHHcCC--CCccccCeeeecc
Q 034147           75 -APDIAKTFLHKLGI--HSMFVPMVRLSCC  101 (103)
Q Consensus        75 -~~~i~~~~l~~~~l--~~~~~~~~i~~~~  101 (103)
                       ....++.+++++|+  .++|  ..+++++
T Consensus       143 k~~~t~~~Llk~~gip~~~~f--~vil~gd  170 (237)
T PRK11009        143 KTETVSKTLADDFHIPADNMN--PVIFAGD  170 (237)
T ss_pred             ccHHHHHHHHHHcCCCcccce--eEEEcCC
Confidence             22224666667999  6777  6777765

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=99.02  E-value=2.6e-09  Score=72.95  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=57.4

Q ss_pred             CCCCceEEEeCCCCcccccccc---------------c--ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--H
Q 034147           19 ENLPRLVVFDLDYTLWPFYCEC---------------C--YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--A   79 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~---------------~--~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~   79 (103)
                      ...+.+|+||+|+|+++...+.               +  .......++||+.++++.|+++|++++++||++....  +
T Consensus        72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T  151 (266)
T TIGR01533        72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAAT  151 (266)
T ss_pred             CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHH
Confidence            3457899999999998744221               0  1123456899999999999999999999999884431  3


Q ss_pred             HHHHHHcCCCCccccCeeee
Q 034147           80 KTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        80 ~~~l~~~~l~~~~~~~~i~~   99 (103)
                      ...++.+|+...+ .+.++.
T Consensus       152 ~~~Lkk~Gi~~~~-~d~lll  170 (266)
T TIGR01533       152 LKNLKRFGFPQAD-EEHLLL  170 (266)
T ss_pred             HHHHHHcCcCCCC-cceEEe
Confidence            4778889987543 144443

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=99.01  E-value=1.1e-09  Score=72.42  Aligned_cols=40  Identities=15%  Similarity=0.231  Sum_probs=34.7

Q ss_pred             ccChhHHHHHH-HHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           48 YLYPHAKGILE-ALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        48 ~~~~g~~~~l~-~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      .++|++.+.|+ +++++|++++|+|+++... ++...+..++
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~-~~~ia~~~~~  134 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQPL-VEAVYFDSNF  134 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcHHH-HHHHHHhccc
Confidence            57999999996 7888999999999999877 6888888655

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>smart00775 LNS2 LNS2 domain

Probab=99.01  E-value=1.5e-09  Score=68.81  Aligned_cols=60  Identities=15%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             eEEEeCCCCccccccc---ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHH---HHHHH
Q 034147           24 LVVFDLDYTLWPFYCE---CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAK---TFLHK   85 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~---~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~---~~l~~   85 (103)
                      ++++|+||||++.+.-   ....+ .....|++.+++++++++|++++++|||+... +.   .+++.
T Consensus         1 iVisDIDGTL~~sd~~~~~~~~~~-~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~-~~~t~~~l~~   66 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVVPIIG-KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQ-ADRTRSYLSQ   66 (157)
T ss_pred             CEEEecCCCCcccccccccccccc-cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHH-HHHHHHHHHH
Confidence            4799999999984210   00001 12467999999999999999999999999665 33   56666

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.00  E-value=2.1e-09  Score=68.84  Aligned_cols=62  Identities=29%  Similarity=0.282  Sum_probs=51.4

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC-chhHHHHHHHHcCCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLHKLGIHS   90 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~-~~~i~~~~l~~~~l~~   90 (103)
                      ..++++++|+||||+..        ....++|++.++|++|+++|++++++||++ ... +....+.+++..
T Consensus        23 ~~v~~vv~D~Dgtl~~~--------~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~-~~~~~~~~gl~~   85 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYP--------DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQR-AKAVEKALGIPV   85 (170)
T ss_pred             CCCCEEEEecCCccccC--------CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHH-HHHHHHHcCCEE
Confidence            46899999999999962        234689999999999999999999999998 455 577778888753

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.00  E-value=6.1e-10  Score=74.63  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=38.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++ ++++++||++..      ++++|+..+|  +.+++++
T Consensus       112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~------~~~~gl~~~f--d~i~~~~  157 (238)
T PRK10748        112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ------PELFGLGDYF--EFVLRAG  157 (238)
T ss_pred             CCCCccHHHHHHHHHcC-CCEEEEECCCch------HHHCCcHHhh--ceeEecc
Confidence            45779999999999985 999999998743      3678998999  8888765

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.00  E-value=5.3e-10  Score=72.95  Aligned_cols=51  Identities=18%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|++|+++|++++|+||++... ....+.+ .++..+|  +.+++++
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~-~~~~~~~~~~l~~~f--d~v~~s~  135 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEVRAAA--DHIYLSQ  135 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhh-HHHHHhhchhHHHhc--CEEEEec
Confidence            478999999999999999999999999766 3555444 3677778  7777765

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.99  E-value=2.2e-09  Score=79.20  Aligned_cols=77  Identities=18%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             CCCceEEEeCCCCccccccc--ccccCCCc-ccChhHHHHHHHHHHCCCeEEEEeCCCc------------hhHHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCE--CCYEDEIP-YLYPHAKGILEALKEKGIHVAVASRSPA------------PDIAKTFLH   84 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~--~~~~~~~~-~~~~g~~~~l~~l~~~G~~v~i~T~~~~------------~~i~~~~l~   84 (103)
                      ...|+++||+||||+...+.  +....... .++||+.+.|++|++.|++++|+||.+.            .. +...++
T Consensus       166 ~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~k-i~~iL~  244 (526)
T TIGR01663       166 GQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAK-IEAIVA  244 (526)
T ss_pred             ccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHH-HHHHHH
Confidence            34689999999999974321  01111122 2689999999999999999999999876            34 477888


Q ss_pred             HcCCCCccccCeeeecc
Q 034147           85 KLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        85 ~~~l~~~~~~~~i~~~~  101 (103)
                      ++|+.  |  +.+++++
T Consensus       245 ~lgip--f--dviia~~  257 (526)
T TIGR01663       245 KLGVP--F--QVFIAIG  257 (526)
T ss_pred             HcCCc--e--EEEEeCC
Confidence            88874  5  5565543

Note that the EC number for the kinase function is: 2.7.1.78

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=98.98  E-value=2.5e-09  Score=73.65  Aligned_cols=44  Identities=23%  Similarity=0.190  Sum_probs=36.3

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .++||+.++|++|+++|++++|+||++... ....+++++...++
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~-~~~~l~~~~~~~~~  187 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKA-VSKIVNTLLGPERA  187 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhcccccc
Confidence            578999999999999999999999999887 47778876433343

>COG4996 Predicted phosphatase [General function prediction only]

Probab=98.96  E-value=2.9e-09  Score=65.39  Aligned_cols=69  Identities=28%  Similarity=0.346  Sum_probs=57.9

Q ss_pred             ceEEEeCCCCcccccccc---------------cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           23 RLVVFDLDYTLWPFYCEC---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~---------------~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      ++++||.|||+||+.-..               +..+...+++|.+++++++++..|+.+..+|=+.... +-+.++.++
T Consensus         1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k-A~~aLral~   79 (164)
T COG4996           1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK-AIKALRALD   79 (164)
T ss_pred             CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH-HHHHHHHhc
Confidence            468999999999965221               1455667899999999999999999999999777666 788899999


Q ss_pred             CCCcc
Q 034147           88 IHSMF   92 (103)
Q Consensus        88 l~~~~   92 (103)
                      +.++|
T Consensus        80 ~~~yF   84 (164)
T COG4996          80 LLQYF   84 (164)
T ss_pred             hhhhE
Confidence            99998

>PRK08238 hypothetical protein; Validated

Probab=98.95  E-value=3.8e-09  Score=77.37  Aligned_cols=73  Identities=21%  Similarity=0.094  Sum_probs=57.7

Q ss_pred             ceEEEeCCCCccccccccc------------------------------------ccCCCcccChhHHHHHHHHHHCCCe
Q 034147           23 RLVVFDLDYTLWPFYCECC------------------------------------YEDEIPYLYPHAKGILEALKEKGIH   66 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~------------------------------------~~~~~~~~~~g~~~~l~~l~~~G~~   66 (103)
                      .-++||+||||+..++..+                                    -+....++.|++.+.+++++++|++
T Consensus        11 ~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~G~~   90 (479)
T PRK08238         11 LPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAAGRK   90 (479)
T ss_pred             CCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHCCCE
Confidence            3489999999998765522                                    1122234679999999999999999


Q ss_pred             EEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           67 VAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        67 v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ++++|+++... ++..++++|+   |  +.+++++
T Consensus        91 v~LaTas~~~~-a~~i~~~lGl---F--d~Vigsd  119 (479)
T PRK08238         91 LVLATASDERL-AQAVAAHLGL---F--DGVFASD  119 (479)
T ss_pred             EEEEeCCCHHH-HHHHHHHcCC---C--CEEEeCC
Confidence            99999999887 6999999987   5  6676665

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=98.95  E-value=2.6e-09  Score=71.66  Aligned_cols=63  Identities=25%  Similarity=0.320  Sum_probs=47.0

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHH-cCCCCccccCeeeec
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHK-LGIHSMFVPMVRLSC  100 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~-~~l~~~~~~~~i~~~  100 (103)
                      ++||+||||++.          ..++|++.+.++.++++|+++.++||++   ...+ ...+.. +|+.-..  ++++++
T Consensus         1 ~lfD~DGvL~~~----------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~-~~~l~~~~g~~~~~--~~iits   67 (236)
T TIGR01460         1 FLFDIDGVLWLG----------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDY-AEKLSSLLGVDVSP--DQIITS   67 (236)
T ss_pred             CEEeCcCccCcC----------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHH-HHHHHHhcCCCCCH--HHeeeH
Confidence            589999999983          3468999999999999999999999555   4443 444555 6765333  666664

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.94  E-value=3.4e-09  Score=69.17  Aligned_cols=55  Identities=33%  Similarity=0.454  Sum_probs=45.4

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      ++++|+||||++.      .  ..++.+.+.+.|++|+++|++++++|||+... +...++.++
T Consensus         1 li~~D~DgTL~~~------~--~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~-~~~~~~~~~   55 (204)
T TIGR01484         1 LLFFDLDGTLLDP------N--AHELSPETIEALERLREAGVKVVLVTGRSLAE-IKELLKQLP   55 (204)
T ss_pred             CEEEeCcCCCcCC------C--CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHhCC
Confidence            4789999999972      1  13466889999999999999999999999988 488887644

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=98.92  E-value=3.6e-09  Score=72.18  Aligned_cols=62  Identities=16%  Similarity=0.044  Sum_probs=48.4

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ..+++||+||||++..    .......+.+.+.+.|++|++ .|++++|+|||+... +..+++.+++
T Consensus        14 ~~li~~D~DGTLl~~~----~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~-~~~~~~~~~~   76 (266)
T PRK10187         14 NYAWFFDLDGTLAEIK----PHPDQVVVPDNILQGLQLLATANDGALALISGRSMVE-LDALAKPYRF   76 (266)
T ss_pred             CEEEEEecCCCCCCCC----CCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHH-HHHhcCcccc
Confidence            3678999999999731    222334567899999999998 799999999999888 4777766553

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=98.91  E-value=3.1e-09  Score=71.32  Aligned_cols=53  Identities=21%  Similarity=0.288  Sum_probs=45.8

Q ss_pred             CCcccChhHHHHHHHH--HHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           45 EIPYLYPHAKGILEAL--KEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l--~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      +..++.||+.++++.+  ++.|+.++|+|.+....| +.++++.|+...|  ..|+|.
T Consensus        68 ~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI-~~iL~~~gl~~~f--~~I~TN  122 (234)
T PF06888_consen   68 RSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFI-ETILEHHGLRDCF--SEIFTN  122 (234)
T ss_pred             HcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHH-HHHHHhCCCcccc--ceEEeC
Confidence            4556889999999999  457999999998888885 9999999999888  777764

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=98.89  E-value=2.8e-09  Score=74.43  Aligned_cols=56  Identities=20%  Similarity=0.164  Sum_probs=44.7

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC----CCeEEEEeCCC---chhHHHHHHHHcCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP---APDIAKTFLHKLGIH   89 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~----G~~v~i~T~~~---~~~i~~~~l~~~~l~   89 (103)
                      +++||+|||||++          ..+.|++.++++.|+++    |+++.++||+.   ...+++.+.+++|+.
T Consensus         2 ~~ifD~DGvL~~g----------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~   64 (321)
T TIGR01456         2 GFAFDIDGVLFRG----------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD   64 (321)
T ss_pred             EEEEeCcCceECC----------ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence            4899999999973          44689999999999998    99999999776   344334444788875

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=98.87  E-value=5.2e-09  Score=69.07  Aligned_cols=42  Identities=14%  Similarity=0.040  Sum_probs=37.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ...++||+.++++.|+++|++++|+|++.... ++..+++++.
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~-i~~il~~~~~  109 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFF-VYPLLEGIVE  109 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHH-HHHHHHhhCC
Confidence            45789999999999999999999999999877 5888888754

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=98.87  E-value=9.1e-09  Score=70.70  Aligned_cols=68  Identities=22%  Similarity=0.293  Sum_probs=52.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH---HcCCCCccccCee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH---KLGIHSMFVPMVR   97 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~---~~~l~~~~~~~~i   97 (103)
                      .++.++||+||+||.          ...+.||+.++++.|++.|..+.++||++.... +..++   ++|+.. +..+.|
T Consensus        21 ~~DtfifDcDGVlW~----------g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr-~~y~kK~~~lG~~~-v~e~~i   88 (306)
T KOG2882|consen   21 SFDTFIFDCDGVLWL----------GEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSR-EQYMKKFAKLGFNS-VKEENI   88 (306)
T ss_pred             hcCEEEEcCCcceee----------cCCCCCChHHHHHHHHHcCCcEEEEeCCCcchH-HHHHHHHHHhCccc-cCcccc
Confidence            477799999999997          355789999999999999999999999987663 55544   566653 333455


Q ss_pred             eec
Q 034147           98 LSC  100 (103)
Q Consensus        98 ~~~  100 (103)
                      +++
T Consensus        89 ~ss   91 (306)
T KOG2882|consen   89 FSS   91 (306)
T ss_pred             cCh
Confidence            543

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=98.86  E-value=5.3e-09  Score=70.44  Aligned_cols=60  Identities=17%  Similarity=0.143  Sum_probs=48.4

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +++.|+||||+++.     .. .....|...+++++++++|++++++|||+... +....+.+++..
T Consensus         3 li~tDlDGTLl~~~-----~~-~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~-~~~~~~~~~~~~   62 (249)
T TIGR01485         3 LLVSDLDNTLVDHT-----DG-DNQALLRLNALLEDHRGEDSLLVYSTGRSPHS-YKELQKQKPLLT   62 (249)
T ss_pred             EEEEcCCCcCcCCC-----CC-ChHHHHHHHHHHHHhhccCceEEEEcCCCHHH-HHHHHhcCCCCC
Confidence            67889999999731     11 23456889999999999999999999999988 488888787643

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PLN02423 phosphomannomutase

Probab=98.86  E-value=8.7e-09  Score=69.55  Aligned_cols=56  Identities=25%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             CCCCceE-EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147           19 ENLPRLV-VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (103)
Q Consensus        19 ~~~~~~~-~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~   85 (103)
                      .+.++++ +||+||||++.      ..   .+.+.+.+++++|+++ ++++++||++...+ ...+..
T Consensus         3 ~~~~~~i~~~D~DGTLl~~------~~---~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~-~~~~~~   59 (245)
T PLN02423          3 ARKPGVIALFDVDGTLTAP------RK---EATPEMLEFMKELRKV-VTVGVVGGSDLSKI-SEQLGK   59 (245)
T ss_pred             CCccceEEEEeccCCCcCC------CC---cCCHHHHHHHHHHHhC-CEEEEECCcCHHHH-HHHhcc
Confidence            3456655 59999999973      22   3458889999999987 99999999986663 444443

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=98.85  E-value=1.4e-08  Score=64.50  Aligned_cols=61  Identities=34%  Similarity=0.417  Sum_probs=52.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++.+++|+|.||+.-+        .....|.+.+.+..+++.|+++.|+||+.+.. +....+++|++.
T Consensus        27 Gikgvi~DlDNTLv~wd--------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R-V~~~~~~l~v~f   87 (175)
T COG2179          27 GIKGVILDLDNTLVPWD--------NPDATPELRAWLAELKEAGIKVVVVSNNKESR-VARAAEKLGVPF   87 (175)
T ss_pred             CCcEEEEeccCceeccc--------CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHH-HHhhhhhcCCce
Confidence            58899999999999731        34466999999999999999999999999888 588899999854

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=98.84  E-value=1.8e-08  Score=71.34  Aligned_cols=67  Identities=16%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             CceEEEeCCCCcccccc--cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC---------------CchhHHHHHHH
Q 034147           22 PRLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTFLH   84 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~--~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~---------------~~~~i~~~~l~   84 (103)
                      .++++||.||||+....  +.........++||+.++|++|+++|++++|+||+               +... ....++
T Consensus         2 ~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~-i~~iL~   80 (354)
T PRK05446          2 QKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNL-MMQIFE   80 (354)
T ss_pred             CcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHH-HHHHHH
Confidence            57899999999998421  11233445789999999999999999999999996               2233 356677


Q ss_pred             HcCCC
Q 034147           85 KLGIH   89 (103)
Q Consensus        85 ~~~l~   89 (103)
                      .+++.
T Consensus        81 ~~gl~   85 (354)
T PRK05446         81 SQGIK   85 (354)
T ss_pred             HcCCc
Confidence            88773

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=98.80  E-value=1e-09  Score=69.91  Aligned_cols=45  Identities=20%  Similarity=0.207  Sum_probs=37.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+       +++|+||++... ....++++++..+|  +.+++++
T Consensus        89 ~~~~~g~~~~L~-------~~~i~Tn~~~~~-~~~~l~~~~l~~~f--d~v~~~~  133 (175)
T TIGR01493        89 LPPWPDSAAALA-------RVAILSNASHWA-FDQFAQQAGLPWYF--DRAFSVD  133 (175)
T ss_pred             CCCCCchHHHHH-------HHhhhhCCCHHH-HHHHHHHCCCHHHH--hhhccHh
Confidence            347788888887       378999999888 58899999999999  7777765

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=98.76  E-value=1.9e-08  Score=67.18  Aligned_cols=54  Identities=24%  Similarity=0.276  Sum_probs=42.2

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ++++|+||||++.      ..   .+ +...++++ ++++|++++++|||+... +..+++.+++.
T Consensus         1 li~~DlDgTLl~~------~~---~~-~~~~~~~~-~~~~gi~~viaTGR~~~~-v~~~~~~l~l~   54 (236)
T TIGR02471         1 LIITDLDNTLLGD------DE---GL-ASFVELLR-GSGDAVGFGIATGRSVES-AKSRYAKLNLP   54 (236)
T ss_pred             CeEEeccccccCC------HH---HH-HHHHHHHH-hcCCCceEEEEeCCCHHH-HHHHHHhCCCC
Confidence            4789999999972      11   12 23447777 688999999999999999 59999999874

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=98.76  E-value=1.5e-08  Score=67.49  Aligned_cols=49  Identities=27%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC-CCCcc
Q 034147           43 EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG-IHSMF   92 (103)
Q Consensus        43 ~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~-l~~~~   92 (103)
                      ......+.||+.+++++|+.+|++++++|++++.. .....++++ +...|
T Consensus        87 ~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~-~~~k~~~~~~~~~~f  136 (222)
T KOG2914|consen   87 LFMNSILMPGAEKLVNHLKNNGIPVALATSSTSAS-FELKISRHEDIFKNF  136 (222)
T ss_pred             hccccccCCcHHHHHHHHHhCCCCeeEEecCCccc-HHHHHHHhhHHHHhc
Confidence            34566788999999999999999999999998888 477777776 44445

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.74  E-value=3.5e-08  Score=64.30  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=41.5

Q ss_pred             CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ....++.||+++++..|+++|..++++||+.+.. +......+|++.
T Consensus        84 ~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~-i~~Va~~Lgi~~  129 (227)
T KOG1615|consen   84 KQKPTLTPGIRELVSRLHARGTQVYLISGGFRQL-IEPVAEQLGIPK  129 (227)
T ss_pred             cCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHhCCcH
Confidence            3456788999999999999999999999999888 699999999975

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=98.73  E-value=7.9e-08  Score=61.23  Aligned_cols=74  Identities=22%  Similarity=0.164  Sum_probs=55.5

Q ss_pred             ceEEEeCCCCcccccccccc---------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           23 RLVVFDLDYTLWPFYCECCY---------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~---------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      +.+++|+|+||+-....-..               ..-.....||+.++|++|.+. +.++|+|+++... |+..+++++
T Consensus         2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~y-A~~il~~ld   79 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEY-ADPVLDILD   79 (162)
T ss_pred             cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHH-HHHHHHHHC
Confidence            46899999999974322100               011124679999999999987 9999999999888 799999999


Q ss_pred             CCC-ccccCeeeec
Q 034147           88 IHS-MFVPMVRLSC  100 (103)
Q Consensus        88 l~~-~~~~~~i~~~  100 (103)
                      ... +|  ..++++
T Consensus        80 p~~~~f--~~~l~r   91 (162)
T TIGR02251        80 RGGKVI--SRRLYR   91 (162)
T ss_pred             cCCCEE--eEEEEc
Confidence            765 66  555544

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.73  E-value=8.6e-08  Score=60.81  Aligned_cols=78  Identities=17%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CCceEEEeCCCCcccccccccc--------------------------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCY--------------------------EDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~--------------------------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      ....+++|+|.||+.+......                          ......++||+.++|+++++. +.++|+|+++
T Consensus         5 ~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~   83 (156)
T TIGR02250         5 KKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGT   83 (156)
T ss_pred             CceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCc
Confidence            3456899999999985432100                          011245789999999999965 9999999999


Q ss_pred             chhHHHHHHHHcCCCC-ccccCeeeecc
Q 034147           75 APDIAKTFLHKLGIHS-MFVPMVRLSCC  101 (103)
Q Consensus        75 ~~~i~~~~l~~~~l~~-~~~~~~i~~~~  101 (103)
                      ... |...++.++... +| ...+++++
T Consensus        84 ~~y-A~~vl~~ldp~~~~F-~~ri~~rd  109 (156)
T TIGR02250        84 RAY-AQAIAKLIDPDGKYF-GDRIISRD  109 (156)
T ss_pred             HHH-HHHHHHHhCcCCCee-ccEEEEec
Confidence            888 899999999874 55 13455543

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>PLN03017 trehalose-phosphatase

Probab=98.73  E-value=4.3e-08  Score=69.52  Aligned_cols=58  Identities=16%  Similarity=0.256  Sum_probs=44.6

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      ....++++|+||||.+..    .......+.+++.+.|++|+ +|++++|+|||+...+ ..++
T Consensus       109 ~k~~llflD~DGTL~Piv----~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l-~~~~  166 (366)
T PLN03017        109 GKQIVMFLDYDGTLSPIV----DDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKV-YNFV  166 (366)
T ss_pred             CCCeEEEEecCCcCcCCc----CCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHH-HHhh
Confidence            345678889999999631    22334467899999999999 6799999999998884 6653

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=98.72  E-value=2.4e-08  Score=63.48  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=36.3

Q ss_pred             ceEEEeCCCCccccccccc--ccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCC
Q 034147           23 RLVVFDLDYTLWPFYCECC--YEDEIPYLY-PHAKGILEALKEKGIHVAVASRS   73 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~--~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~   73 (103)
                      |+++||+||||+...+...  .......++ +++.+.|++|++.|+.++|+||.
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ   54 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ   54 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence            5789999999998543211  122333444 58999999999999999999965

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=98.70  E-value=4.3e-08  Score=61.84  Aligned_cols=74  Identities=24%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             ceEEEeCCCCccccccccc----------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC-CCc
Q 034147           23 RLVVFDLDYTLWPFYCECC----------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI-HSM   91 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~----------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l-~~~   91 (103)
                      +++++|+||||+.....-.          .........||+.++|+++.+. +.++|+|++.... ++..++.+.- ..+
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~y-a~~v~~~ldp~~~~   78 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEY-AEPVLDALDPNGKL   78 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHH-HHHHHHHHTTTTSS
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhh-hhHHHHhhhhhccc
Confidence            5799999999998532110          0112345789999999999765 9999999999888 7999999885 345


Q ss_pred             cccCeeeec
Q 034147           92 FVPMVRLSC  100 (103)
Q Consensus        92 ~~~~~i~~~  100 (103)
                      |  ..+++.
T Consensus        79 ~--~~~~~r   85 (159)
T PF03031_consen   79 F--SRRLYR   85 (159)
T ss_dssp             E--EEEEEG
T ss_pred             c--cccccc
Confidence            5  555543

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>PLN02151 trehalose-phosphatase

Probab=98.67  E-value=6.7e-08  Score=68.34  Aligned_cols=64  Identities=16%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             hhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           15 IGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        15 ~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +........++++|+||||.+.    ...+....+.+++.+.|++|.+ +.+++|+||++...+ ..++.
T Consensus        91 ~~~~~~~~~ll~lDyDGTL~PI----v~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l-~~~~~  154 (354)
T PLN02151         91 LHKSEGKQIVMFLDYDGTLSPI----VDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKV-SSFVK  154 (354)
T ss_pred             HHhhcCCceEEEEecCccCCCC----CCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHH-HHHcC
Confidence            3333334567888999999974    2345556788999999999995 579999999998884 66654

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=98.66  E-value=8.9e-08  Score=63.63  Aligned_cols=60  Identities=28%  Similarity=0.404  Sum_probs=48.3

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..+.+|+.|+||||+++     .    ..+. .+..++.+|++.|++|++|||++...+ ...-+.+++..
T Consensus         5 ~~~~lIFtDlD~TLl~~-----~----ye~~-pA~pv~~el~d~G~~Vi~~SSKT~aE~-~~l~~~l~v~~   64 (274)
T COG3769           5 QMPLLIFTDLDGTLLPH-----S----YEWQ-PAAPVLLELKDAGVPVILCSSKTRAEM-LYLQKSLGVQG   64 (274)
T ss_pred             ccceEEEEcccCcccCC-----C----CCCC-ccchHHHHHHHcCCeEEEeccchHHHH-HHHHHhcCCCC
Confidence            35788999999999973     1    1222 378899999999999999999999885 77778888763

>TIGR01675 plant-AP plant acid phosphatase

Probab=98.66  E-value=2.6e-07  Score=61.94  Aligned_cols=86  Identities=17%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             HHhhHHHHHHhhcc---CCCCceEEEeCCCCcccccccc---------------c--ccCCCcccChhHHHHHHHHHHCC
Q 034147            5 EKVKNEALEIIGQF---ENLPRLVVFDLDYTLWPFYCEC---------------C--YEDEIPYLYPHAKGILEALKEKG   64 (103)
Q Consensus         5 ~~~~~~~~~~~~~~---~~~~~~~~fD~DGTL~~~~~~~---------------~--~~~~~~~~~~g~~~~l~~l~~~G   64 (103)
                      +...+++...+...   .....+++||+|.|+++...+.               +  -......+.|++.++++.++++|
T Consensus        57 ~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G  136 (229)
T TIGR01675        57 KRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELG  136 (229)
T ss_pred             HHHHHHHHHHHHHhhccCCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCC
Confidence            33444555544322   2347889999999999833221               0  01234568899999999999999


Q ss_pred             CeEEEEeCCCchh--HHHHHHHHcCCCC
Q 034147           65 IHVAVASRSPAPD--IAKTFLHKLGIHS   90 (103)
Q Consensus        65 ~~v~i~T~~~~~~--i~~~~l~~~~l~~   90 (103)
                      ++++++|||+...  .+...|...|+..
T Consensus       137 ~~Vf~lTGR~e~~r~~T~~nL~~~G~~~  164 (229)
T TIGR01675       137 IKIFLLSGRWEELRNATLDNLINAGFTG  164 (229)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence            9999999999533  1356677778764

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PLN02580 trehalose-phosphatase

Probab=98.65  E-value=7.3e-08  Score=68.82  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=48.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~   85 (103)
                      ...+++||+||||.+.    ...+....+.+++.+.|+.|.+. .+++|+|||+...+ +.++..
T Consensus       118 k~~~LfLDyDGTLaPI----v~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L-~~~l~~  176 (384)
T PLN02580        118 KKIALFLDYDGTLSPI----VDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKV-YELVGL  176 (384)
T ss_pred             CCeEEEEecCCccCCC----CCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHH-HHHhCC
Confidence            3567788999999875    35566778889999999999998 58999999998884 766654

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=98.64  E-value=1.6e-07  Score=61.61  Aligned_cols=79  Identities=18%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ++.-..++++......+++++|+|+||+++.+.  .........|++.++|+.+.+. +.++|.|++.... ++..+..+
T Consensus         6 ~~~~~~~~~~~~~~~kklLVLDLDeTLvh~~~~--~~~~~~~kRP~l~eFL~~~~~~-feIvVwTAa~~~y-a~~~l~~l   81 (195)
T TIGR02245         6 IEQYKIKLLNPPREGKKLLVLDIDYTLFDHRSP--AETGEELMRPYLHEFLTSAYED-YDIVIWSATSMKW-IEIKMTEL   81 (195)
T ss_pred             HHhcCccccCCCCCCCcEEEEeCCCceEccccc--CCCceEEeCCCHHHHHHHHHhC-CEEEEEecCCHHH-HHHHHHHh
Confidence            333334555555566799999999999975321  1122345679999999999994 9999999999888 79999988


Q ss_pred             CCC
Q 034147           87 GIH   89 (103)
Q Consensus        87 ~l~   89 (103)
                      ++.
T Consensus        82 ~~~   84 (195)
T TIGR02245        82 GVL   84 (195)
T ss_pred             ccc
Confidence            753

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=98.60  E-value=2.8e-07  Score=56.21  Aligned_cols=70  Identities=39%  Similarity=0.594  Sum_probs=58.7

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ++++.+|+|++++++.+.+...+.....|+.+...|..|+++|+.++++|+.....++.+.++.+.....
T Consensus        18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~   87 (144)
T KOG4549|consen   18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQT   87 (144)
T ss_pred             eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcc
Confidence            5566777777777777666677777889999999999999999999999999988889999999887653

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.59  E-value=1.2e-07  Score=72.61  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=49.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ..++++||+||||++..    .......+.+.+.+.|++|.+ .|+.++|+||++...+ +..+..+++
T Consensus       491 ~~rLi~~D~DGTL~~~~----~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l-~~~~~~~~l  554 (726)
T PRK14501        491 SRRLLLLDYDGTLVPFA----PDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTL-ERWFGDLPI  554 (726)
T ss_pred             cceEEEEecCccccCCC----CCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHH-HHHhCCCCe
Confidence            46899999999999742    123334567899999999999 5999999999998884 777765543

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=98.57  E-value=7.3e-07  Score=61.29  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=41.2

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...+.||+.+++++|+++|++++|+|++.... ++..++++++.+.+
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~-Ie~vL~~lgl~~~~  164 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNV-LEEVLRQAGVYHPN  164 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHHcCCCCcC
Confidence            57789999999999999999999999999888 59999999986444

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=98.57  E-value=7.4e-08  Score=63.89  Aligned_cols=76  Identities=20%  Similarity=0.224  Sum_probs=62.1

Q ss_pred             CCceEEEeCCCCcccccccc------------------------c---------------------ccCCCcccChhHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCEC------------------------C---------------------YEDEIPYLYPHAKG   55 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~------------------------~---------------------~~~~~~~~~~g~~~   55 (103)
                      ...+++||+|-|+++.+++.                        +                     ..-......||+.+
T Consensus        12 ~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgmv~   91 (256)
T KOG3120|consen   12 PRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGMVR   91 (256)
T ss_pred             CcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccHHH
Confidence            45679999999999987761                        1                     12244567899999


Q ss_pred             HHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147           56 ILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        56 ~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      +++.+++.|. .++|+|-.+.-+| +.+++++++.++|  .+|+|
T Consensus        92 lik~~ak~g~~eliIVSDaNsfFI-e~~Lea~~~~d~F--~~IfT  133 (256)
T KOG3120|consen   92 LIKSAAKLGCFELIIVSDANSFFI-EEILEAAGIHDLF--SEIFT  133 (256)
T ss_pred             HHHHHHhCCCceEEEEecCchhHH-HHHHHHccHHHHH--HHHhc
Confidence            9999999995 9999998887885 9999999999888  66665

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=98.51  E-value=7.1e-07  Score=59.53  Aligned_cols=47  Identities=28%  Similarity=0.405  Sum_probs=38.7

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---CCCCcc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMF   92 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---~l~~~~   92 (103)
                      ....++||+.++|++|+++|++++|+||++... ....++++   ++.++|
T Consensus        92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~-~~~~~~~~~~~~L~~~f  141 (220)
T TIGR01691        92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPA-QKLLFGHSDAGNLTPYF  141 (220)
T ss_pred             cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHhhccccchhhhc
Confidence            345699999999999999999999999999877 47777775   555555

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>TIGR00685 T6PP trehalose-phosphatase

Probab=98.48  E-value=4.3e-07  Score=61.14  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchh
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPD   77 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~   77 (103)
                      .++++||+||||.+.    ...+....+.+++.+.|+.|.+. +..++|+||++...
T Consensus         3 ~~~l~lD~DGTL~~~----~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~   55 (244)
T TIGR00685         3 KRAFFFDYDGTLSEI----VPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLE   55 (244)
T ss_pred             cEEEEEecCccccCC----cCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhh
Confidence            578999999999974    23344566789999999999776 46789999997555

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.46  E-value=4.8e-07  Score=70.34  Aligned_cols=59  Identities=20%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHH-HHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEAL-KEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l-~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ..+++++|+||||++.      ......+.+++.++|++| ++.|..++|+||++...+ +.++...
T Consensus       595 ~~rlI~LDyDGTLlp~------~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L-~~~f~~~  654 (854)
T PLN02205        595 TTRAILLDYDGTLMPQ------ASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTL-ADWFSPC  654 (854)
T ss_pred             cCeEEEEecCCcccCC------ccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHH-HHHhCCC
Confidence            4689999999999973      111345678999999997 778999999999999884 7777543

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=98.45  E-value=2.5e-06  Score=58.43  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=50.3

Q ss_pred             CCceEEEeCCCCccccccc---------------cc---ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHH
Q 034147           21 LPRLVVFDLDYTLWPFYCE---------------CC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAK   80 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~---------------~~---~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~   80 (103)
                      ..++++||+|+|+++...+               |+   -.....++.|++.++.+.++++|++++++|||+...  .+.
T Consensus       100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~  179 (275)
T TIGR01680       100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE  179 (275)
T ss_pred             CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence            4689999999999962211               11   011245678999999999999999999999999532  245


Q ss_pred             HHHHHcCCCC
Q 034147           81 TFLHKLGIHS   90 (103)
Q Consensus        81 ~~l~~~~l~~   90 (103)
                      ..|.+.|+..
T Consensus       180 ~NL~kaGy~~  189 (275)
T TIGR01680       180 ANLKKAGYHT  189 (275)
T ss_pred             HHHHHcCCCC
Confidence            5566667753

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=98.45  E-value=2.7e-07  Score=61.87  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             CCCceEEEeCCCCccccccc------------------ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HH
Q 034147           20 NLPRLVVFDLDYTLWPFYCE------------------CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IA   79 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~------------------~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~   79 (103)
                      ..+.+++||+|+|+++...+                  |...+ ...+.||+.++++.++++|+.|+++|||+...  .+
T Consensus        70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~-~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T  148 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASG-KAPAIPGALELYNYARSRGVKVFFITGRPESQREAT  148 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCT-GGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHH
T ss_pred             CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcc-cCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHH
Confidence            45788999999999863211                  11222 34788999999999999999999999988543  14


Q ss_pred             HHHHHHcCCCC
Q 034147           80 KTFLHKLGIHS   90 (103)
Q Consensus        80 ~~~l~~~~l~~   90 (103)
                      ..-|...|+..
T Consensus       149 ~~nL~~~G~~~  159 (229)
T PF03767_consen  149 EKNLKKAGFPG  159 (229)
T ss_dssp             HHHHHHHTTST
T ss_pred             HHHHHHcCCCc
Confidence            45567777643

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=98.44  E-value=1.1e-06  Score=56.41  Aligned_cols=61  Identities=28%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC--eEEEEeCCC-------chhHHHHHHHHcCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI--HVAVASRSP-------APDIAKTFLHKLGIH   89 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~--~v~i~T~~~-------~~~i~~~~l~~~~l~   89 (103)
                      ..+++++||.|+||+..        ....+.|...+.++++++.+.  .++|+||+.       ... ++..-+.+|++
T Consensus        39 ~Gik~li~DkDNTL~~~--------~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~-a~~~~~~lgIp  108 (168)
T PF09419_consen   39 KGIKALIFDKDNTLTPP--------YEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER-AEALEKALGIP  108 (168)
T ss_pred             cCceEEEEcCCCCCCCC--------CcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH-HHHHHHhhCCc
Confidence            46899999999999863        234577889999999999876  499999883       455 57777788875

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=98.43  E-value=5.5e-07  Score=59.73  Aligned_cols=50  Identities=22%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .+|.+-.+.+|-.|+.++  ..+.||+.... |...++++|+.++|  +.|++.+
T Consensus        99 LkPD~~LRnlLL~l~~r~--k~~FTNa~k~H-A~r~Lk~LGieDcF--egii~~e  148 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR--KWIFTNAYKVH-AIRILKKLGIEDCF--EGIICFE  148 (244)
T ss_pred             cCCCHHHHHHHHhCcccc--EEEecCCcHHH-HHHHHHHhChHHhc--cceeEee
Confidence            567777888999998875  67799999988 89999999999999  8888765

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=98.42  E-value=1.1e-06  Score=55.80  Aligned_cols=62  Identities=16%  Similarity=0.219  Sum_probs=45.4

Q ss_pred             eEEEeCCCCcccccccc---cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc--hhHHHHHHHHc
Q 034147           24 LVVFDLDYTLWPFYCEC---CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA--PDIAKTFLHKL   86 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~---~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~--~~i~~~~l~~~   86 (103)
                      ++++|+|||++.++...   ...+. ....+|+.+++++++++|+++.-+|+++.  ...++.++...
T Consensus         1 VVvsDIDGTiT~SD~~G~i~~~~G~-d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~   67 (157)
T PF08235_consen    1 VVVSDIDGTITKSDVLGHILPILGK-DWTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH   67 (157)
T ss_pred             CEEEeccCCcCccchhhhhhhccCc-hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence            47899999999864210   11122 25679999999999999999999999993  22356666666

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=8.8e-07  Score=60.57  Aligned_cols=63  Identities=22%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ..+++++|+||||.+..    ..+....+.+++.++|+.|.++. ..++|+||++...+ +.++.-.++
T Consensus        17 ~~~~~~lDyDGTl~~i~----~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l-~~~~~v~~i   80 (266)
T COG1877          17 RKRLLFLDYDGTLTEIV----PHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAEL-ERLFGVPGI   80 (266)
T ss_pred             cceEEEEeccccccccc----cCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHH-HHhcCCCCc
Confidence            46889999999999863    45666778899999999999873 46999999998884 776664443

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=98.35  E-value=9.7e-07  Score=57.20  Aligned_cols=53  Identities=15%  Similarity=0.075  Sum_probs=40.8

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      .+++++|.||||......+-.......+.||+.+.+.+|++.|++++++||.+
T Consensus         5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTNQs   57 (181)
T COG0241           5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTNQS   57 (181)
T ss_pred             CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEECCC
Confidence            67899999999986322111222344678999999999999999999999744

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=98.34  E-value=9e-07  Score=57.53  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      ...|.||+.+++++|.+.|..+.++|+++..
T Consensus        71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~  101 (191)
T PF06941_consen   71 NLPPIPGAVEALKKLRDKGHEIVIITARPPE  101 (191)
T ss_dssp             T--B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred             CCCccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence            4579999999999999999777777766543

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PLN02382 probable sucrose-phosphatase

Probab=98.33  E-value=1.6e-06  Score=62.69  Aligned_cols=62  Identities=15%  Similarity=0.067  Sum_probs=44.0

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .-+++.|+||||+++     . .......+....++++++++|+.++++|||+... ...+.+.+++..
T Consensus         9 ~~lI~sDLDGTLL~~-----~-~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~-~~~l~~~~~l~~   70 (413)
T PLN02382          9 RLMIVSDLDHTMVDH-----H-DPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTL-YKELRKEKPLLT   70 (413)
T ss_pred             CEEEEEcCCCcCcCC-----C-CccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHH-HHHHHHhCCCCC
Confidence            445677999999973     1 1111111345556688999999999999999888 488888887543

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.5e-06  Score=54.68  Aligned_cols=42  Identities=24%  Similarity=0.203  Sum_probs=37.6

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      +..++.||.+++++++++++++++|+|++..+.+ ..+++...
T Consensus        70 k~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI-~~lfe~iv  111 (220)
T COG4359          70 KDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFI-YPLFEGIV  111 (220)
T ss_pred             hhcccCccHHHHHHHHHHcCCCEEEEeCCCchHH-HHHHHhhc
Confidence            4467889999999999999999999999998885 99999876

>PTZ00445 p36-lilke protein; Provisional

Probab=98.19  E-value=8.6e-06  Score=53.95  Aligned_cols=70  Identities=17%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             CCceEEEeCCCCccccccc-c-cc----cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--------------HHH
Q 034147           21 LPRLVVFDLDYTLWPFYCE-C-CY----EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--------------IAK   80 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~-~-~~----~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--------------i~~   80 (103)
                      .++++++|+|.||+.-.+. | +.    ..-...+.|....++++|++.|++++|+|=++...              +++
T Consensus        42 GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~  121 (219)
T PTZ00445         42 GIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVE  121 (219)
T ss_pred             CCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHH
Confidence            5899999999999982111 0 00    00111357889999999999999999999555432              346


Q ss_pred             HHHHHcCCCC
Q 034147           81 TFLHKLGIHS   90 (103)
Q Consensus        81 ~~l~~~~l~~   90 (103)
                      ..++.-+.+.
T Consensus       122 ~~lk~s~~~~  131 (219)
T PTZ00445        122 AALKKSKCDF  131 (219)
T ss_pred             HHHHhcCccc
Confidence            6666655543

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=98.17  E-value=4.9e-06  Score=56.02  Aligned_cols=51  Identities=18%  Similarity=0.246  Sum_probs=42.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      .....+++.+++++||++|..++++||-+..  .+..+..+++..+|  +.++.+
T Consensus       111 ~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r--~~~~l~~~~l~~~f--D~vv~S  161 (237)
T KOG3085|consen  111 AWKYLDGMQELLQKLRKKGTILGIISNFDDR--LRLLLLPLGLSAYF--DFVVES  161 (237)
T ss_pred             CceeccHHHHHHHHHHhCCeEEEEecCCcHH--HHHHhhccCHHHhh--hhhhhh
Confidence            4456788999999999999999999999954  37888999999899  776655

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.15  E-value=1e-05  Score=59.16  Aligned_cols=72  Identities=24%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             HhhccCCCCceEEEeCCCCccccccccc-------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           14 IIGQFENLPRLVVFDLDYTLWPFYCECC-------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        14 ~~~~~~~~~~~~~fD~DGTL~~~~~~~~-------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +.++..+..|++++|+|+|||.+-..-+       .......++....+.+..|+++|+.++|||-+.... |.+.+++.
T Consensus       214 ~~A~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~d-a~evF~kh  292 (574)
T COG3882         214 LAAMSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKD-AKEVFRKH  292 (574)
T ss_pred             HHHhhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhh-HHHHHhhC
Confidence            3445566789999999999997432100       111123466778899999999999999999888777 68877765

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=98.15  E-value=6.1e-06  Score=64.71  Aligned_cols=66  Identities=20%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CceEEEeCCCCccccccccccc-----CCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYE-----DEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~-----~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      .++++||+||||++....-...     .....+.|++.++|+.|.+. +..|+|+||++...+ +.++...++
T Consensus       591 ~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~L-e~~fg~~~L  662 (934)
T PLN03064        591 NRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVL-DENFGEFDM  662 (934)
T ss_pred             ceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHH-HHHhCCCCc
Confidence            5789999999999852110000     01345778899999999874 689999999999885 888776543

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=98.15  E-value=2.4e-06  Score=57.20  Aligned_cols=48  Identities=27%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             EEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchh
Q 034147           26 VFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD   77 (103)
Q Consensus        26 ~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~   77 (103)
                      +||+||||.+..    ..+....+.+++.++|++|.+.. ..++|+||++...
T Consensus         1 ~lDyDGTL~p~~----~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~   49 (235)
T PF02358_consen    1 FLDYDGTLAPIV----DDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDD   49 (235)
T ss_dssp             EEE-TTTSS-------S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred             CcccCCccCCCC----CCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence            689999999853    34556678899999999998864 4699999999765

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=98.12  E-value=7.3e-06  Score=57.97  Aligned_cols=55  Identities=20%  Similarity=0.146  Sum_probs=48.1

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc-C-------CCCccccCeeeeccc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G-------IHSMFVPMVRLSCCI  102 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~-~-------l~~~~~~~~i~~~~~  102 (103)
                      ....+.||+.++|++|+++|++++|+||++... ++..++.+ +       +.++|  +.|+++.-
T Consensus       181 ~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~y-t~~im~~l~g~~~~~~~w~~yF--D~IIt~a~  243 (343)
T TIGR02244       181 KYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDY-TDKGMKYLLGPFLGEHDWRDYF--DVVIVDAR  243 (343)
T ss_pred             HHhccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhhCCcccccchHhhC--cEEEeCCC
Confidence            445678999999999999999999999999988 79999996 7       88999  88888753

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=98.11  E-value=8.3e-06  Score=63.25  Aligned_cols=64  Identities=23%  Similarity=0.120  Sum_probs=47.7

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      .++++||+||||.+....- .......+.|++.++|+.|.+. +..|+|+||++...+ +.++...+
T Consensus       507 ~rll~LDyDGTL~~~~~~~-~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L-~~~~~~~~  571 (797)
T PLN03063        507 NRLLILGFYGTLTEPRNSQ-IKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDIL-DKNFGEYN  571 (797)
T ss_pred             CeEEEEecCccccCCCCCc-cccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHH-HHHhCCCC
Confidence            5789999999999742100 0223456788999999999864 689999999998885 87776543

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=98.08  E-value=5.8e-06  Score=55.95  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=43.0

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ++++++|+||||+++.         ........++++...+.++.++++||++... +...++..++..   ++.++++
T Consensus         2 ~~ll~sDlD~Tl~~~~---------~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~-~~~~~~~~~l~~---Pd~~I~s   67 (247)
T PF05116_consen    2 PRLLASDLDGTLIDGD---------DEALARLEELLEQQARPEILFVYVTGRSLES-VLRLLREYNLPQ---PDYIITS   67 (247)
T ss_dssp             SEEEEEETBTTTBHCH---------HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHH-HHHHHHHCT-EE----SEEEET
T ss_pred             CEEEEEECCCCCcCCC---------HHHHHHHHHHHHHhhCCCceEEEECCCCHHH-HHHHHHhCCCCC---CCEEEec
Confidence            4678999999999421         1122344555554446789999999999998 588899887632   2555554

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PLN02811 hydrolase

Probab=98.04  E-value=7.5e-06  Score=54.15  Aligned_cols=54  Identities=20%  Similarity=0.223  Sum_probs=41.9

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++||+.++|+.|+++|++++|+||+....+.....+..++..+|  +.+++++
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f--~~i~~~~  129 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLM--HHVVTGD  129 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhC--CEEEECC
Confidence            35688999999999999999999999998755323344445677778  7777765

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=97.92  E-value=0.00013  Score=49.36  Aligned_cols=71  Identities=18%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             CCceEEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh-H--HH
Q 034147           21 LPRLVVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD-I--AK   80 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~-i--~~   80 (103)
                      ..++|+.|+|-|++|...+..                 -.....++.||+.+++++.-++|..+..+|+|..+. .  +.
T Consensus        78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~  157 (274)
T COG2503          78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTI  157 (274)
T ss_pred             CCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhH
Confidence            356899999999998443311                 123456788999999999999999999999998544 1  23


Q ss_pred             HHHHHcCCCCc
Q 034147           81 TFLHKLGIHSM   91 (103)
Q Consensus        81 ~~l~~~~l~~~   91 (103)
                      .-+.++|++..
T Consensus       158 ~nLk~~g~~~~  168 (274)
T COG2503         158 ENLKSEGLPQV  168 (274)
T ss_pred             HHHHHcCcccc
Confidence            44566677653

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=97.87  E-value=4.1e-05  Score=57.22  Aligned_cols=65  Identities=25%  Similarity=0.275  Sum_probs=55.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+.+..||++...      ..-...++||+.+++++|+++| ++++++||.+... ++..++++|+.++|
T Consensus       363 g~~~~~v~~~~~~~g~------i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~-a~~i~~~lgi~~~f  428 (556)
T TIGR01525       363 GKTVVFVAVDGELLGV------IALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSA-AEAVAAELGIDEVH  428 (556)
T ss_pred             CcEEEEEEECCEEEEE------EEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHH-HHHHHHHhCCCeee
Confidence            3567888899987752      2334568999999999999999 9999999999888 79999999998877

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=97.85  E-value=6.7e-05  Score=49.81  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHHHHHHHcCCCCccccCee
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~~~l~~~~l~~~~~~~~i   97 (103)
                      +.++.+++|+-|||...          ..+.||+.+.++.|+..+.++=.+||....+  -....++++|+.-  +.++|
T Consensus         5 ~~v~gvLlDlSGtLh~e----------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v--~eeei   72 (262)
T KOG3040|consen    5 RAVKGVLLDLSGTLHIE----------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV--SEEEI   72 (262)
T ss_pred             cccceEEEeccceEecc----------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc--cHHHh
Confidence            34678999999999972          3377999999999999899999999766433  1356677777753  23566


Q ss_pred             eec
Q 034147           98 LSC  100 (103)
Q Consensus        98 ~~~  100 (103)
                      +++
T Consensus        73 ~ts   75 (262)
T KOG3040|consen   73 FTS   75 (262)
T ss_pred             cCc
Confidence            654

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=97.70  E-value=0.00017  Score=50.58  Aligned_cols=57  Identities=21%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC----CCeEEEEeCCC----chhHHHHHHHHcCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK----GIHVAVASRSP----APDIAKTFLHKLGIH   89 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~----G~~v~i~T~~~----~~~i~~~~l~~~~l~   89 (103)
                      .=.++||+||+|+-          ..++.+++.++++.|..+    .+|++++||+.    +.. +++....+|..
T Consensus        35 ~fgfafDIDGVL~R----------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~r-A~~lS~~Lgv~   99 (389)
T KOG1618|consen   35 TFGFAFDIDGVLFR----------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSR-AQELSALLGVE   99 (389)
T ss_pred             ceeEEEecccEEEe----------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhH-HHHHHHhhCCc
Confidence            34589999999997          346789999999999988    79999999765    223 45555666654

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=97.55  E-value=0.00023  Score=53.42  Aligned_cols=61  Identities=26%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ..++.++.||++.-.      ..-...++|++.+++++|+++|++++++||.+... ++...+++|++
T Consensus       385 ~~~~~~~~~~~~~g~------~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~-a~~ia~~lgi~  445 (562)
T TIGR01511       385 STSVLVAVNGELAGV------FALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKT-AKAVAKELGIN  445 (562)
T ss_pred             CEEEEEEECCEEEEE------EEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCc
Confidence            466788999998742      12234688999999999999999999999999887 79999999985

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=97.50  E-value=0.00022  Score=53.25  Aligned_cols=63  Identities=22%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+-.||++...      ......++||+.+.+++|+++|+ +++++||.+... ++..++++|++++|
T Consensus       343 ~~~~v~~~~~~~g~------i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~-a~~i~~~lgi~~~f  406 (536)
T TIGR01512       343 TIVHVARDGTYLGY------ILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAV-AERVARELGIDEVH  406 (536)
T ss_pred             eEEEEEECCEEEEE------EEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHH-HHHHHHHcCChhhh
Confidence            34555667776542      22245689999999999999999 999999999888 79999999998877

.

>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway

Probab=97.41  E-value=0.0012  Score=47.35  Aligned_cols=58  Identities=22%  Similarity=0.238  Sum_probs=40.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ..+++-||-|+||++.       +........+..-|-+|-++|+.|+|+|...... +..+-+++
T Consensus       146 ~L~LvTFDgDvTLY~D-------G~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~-a~kY~~RL  203 (408)
T PF06437_consen  146 GLKLVTFDGDVTLYED-------GASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG-AEKYEERL  203 (408)
T ss_pred             CceEEEEcCCcccccC-------CCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC-hHHHHHHH
Confidence            5799999999999972       3333334445554445556789999999877766 56655554

; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=97.36  E-value=0.00052  Score=45.35  Aligned_cols=45  Identities=27%  Similarity=0.378  Sum_probs=36.6

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~   77 (103)
                      -+++||+||||+..         .....|.+.++|+.|+++ +.++++-++....
T Consensus        12 ~l~lfdvdgtLt~~---------r~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k   56 (252)
T KOG3189|consen   12 TLCLFDVDGTLTPP---------RQKVTPEMLEFLQKLRKK-VTIGFVGGSDLSK   56 (252)
T ss_pred             eEEEEecCCccccc---------cccCCHHHHHHHHHHhhh-eEEEEeecHHHHH
Confidence            46889999999963         345679999999999987 8999998887544

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=97.10  E-value=0.00077  Score=43.65  Aligned_cols=43  Identities=37%  Similarity=0.498  Sum_probs=38.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..++|++.++|++|++.|++++++||.+... +....+.+|+..
T Consensus       126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~-a~~~~~~lgi~~  168 (215)
T PF00702_consen  126 DPLRPGAKEALQELKEAGIKVAILTGDNEST-ASAIAKQLGIFD  168 (215)
T ss_dssp             EEBHTTHHHHHHHHHHTTEEEEEEESSEHHH-HHHHHHHTTSCS
T ss_pred             CcchhhhhhhhhhhhccCcceeeeecccccc-cccccccccccc
Confidence            4678999999999999999999999999888 799999999954

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=96.99  E-value=0.0012  Score=42.11  Aligned_cols=40  Identities=30%  Similarity=0.551  Sum_probs=34.8

Q ss_pred             ChhHH----HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           50 YPHAK----GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        50 ~~g~~----~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|++.    ++++.++++|++++|+|+++... ++..++.++++.
T Consensus        87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~-i~~~~~~~~i~~  130 (192)
T PF12710_consen   87 FPGFIPDAMELIRELKDNGIKVVIVSGSPDEI-IEPIAERLGIDD  130 (192)
T ss_dssp             CTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHH-HHHHHHHTTSSE
T ss_pred             CcCchhhHHHHHHHHHHCCCEEEEECCCcHHH-HHHHHHHcCCCc
Confidence            35556    99999999999999999998777 699999999876

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=96.95  E-value=0.0036  Score=49.39  Aligned_cols=46  Identities=17%  Similarity=0.221  Sum_probs=41.6

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+++|++.+.+++|++.|++++++||.+... +....+++|+...+
T Consensus       526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~t-A~~ia~~~Gi~~~~  571 (884)
T TIGR01522       526 NDPPRPGVKEAVTTLITGGVRIIMITGDSQET-AVSIARRLGMPSKT  571 (884)
T ss_pred             cCcchhHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCCCC
Confidence            45688999999999999999999999999888 89999999997654

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=96.92  E-value=0.0037  Score=42.60  Aligned_cols=68  Identities=26%  Similarity=0.270  Sum_probs=45.8

Q ss_pred             CCceEEEeCCCCccccccccc-----------------------------------ccCCCcccChhHHHHHHHHHHCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECC-----------------------------------YEDEIPYLYPHAKGILEALKEKGI   65 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~-----------------------------------~~~~~~~~~~g~~~~l~~l~~~G~   65 (103)
                      .--+++||+|.||+.+.....                                   .....-..-+.+.++++.++++|+
T Consensus        19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~   98 (252)
T PF11019_consen   19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI   98 (252)
T ss_pred             CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence            345799999999998553311                                   111222344678899999999999


Q ss_pred             eEEEEeCCCchhHHHHHHH---HcCCC
Q 034147           66 HVAVASRSPAPDIAKTFLH---KLGIH   89 (103)
Q Consensus        66 ~v~i~T~~~~~~i~~~~l~---~~~l~   89 (103)
                      ++..+|.++... ....++   .+|++
T Consensus        99 ~v~alT~~~~~~-~~~t~~~Lk~~gi~  124 (252)
T PF11019_consen   99 PVIALTARGPNM-EDWTLRELKSLGID  124 (252)
T ss_pred             cEEEEcCCChhh-HHHHHHHHHHCCCC
Confidence            999999888544 344444   45553

The function is not known.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=96.69  E-value=0.0022  Score=46.06  Aligned_cols=54  Identities=20%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CCceEEEeCCCCcccccccc---cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCEC---CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~---~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      ..+.+.||+||||++..+..   ........+++....=++.+.+.|+.++|.|+..
T Consensus        74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~  130 (422)
T KOG2134|consen   74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN  130 (422)
T ss_pred             CcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence            46789999999999954421   0112333577888899999999999999999655

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=96.64  E-value=0.014  Score=38.13  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=52.2

Q ss_pred             CCCceEEEeCCCCcccccccc---------------------c----ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCEC---------------------C----YEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~---------------------~----~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      +.+-.+-||+|.|++-...++                     +    ...+...|.+-+.+++...+++|-.+..+||+.
T Consensus        61 ~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt  140 (237)
T COG3700          61 RPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRT  140 (237)
T ss_pred             CCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            345668899999998644331                     0    122344466778899999999999999999988


Q ss_pred             chh---HHHHHHHHcCCCCccccCeeeecc
Q 034147           75 APD---IAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        75 ~~~---i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...   ++..+.+.|.+....  ..++.++
T Consensus       141 ~gk~d~vsk~Lak~F~i~~m~--pv~f~Gd  168 (237)
T COG3700         141 PGKTDTVSKTLAKNFHITNMN--PVIFAGD  168 (237)
T ss_pred             CCcccccchhHHhhcccCCCc--ceeeccC
Confidence            543   123334456665544  4455543

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=96.62  E-value=0.0069  Score=47.05  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=51.6

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ..+++++=.||++.-.      -.-...++|++.+.+++|+++|++++++||.+... ++...+++|+..+
T Consensus       547 g~~~v~va~~~~~~g~------i~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~-a~~ia~~lgi~~~  610 (741)
T PRK11033        547 GKTVVLVLRNDDVLGL------IALQDTLRADARQAISELKALGIKGVMLTGDNPRA-AAAIAGELGIDFR  610 (741)
T ss_pred             CCEEEEEEECCEEEEE------EEEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCee
Confidence            3566777778887641      12235688999999999999999999999999888 7999999999643

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=96.61  E-value=0.014  Score=36.33  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=43.0

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe--CCCchhHHHHHHHHcCCCC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T--~~~~~~i~~~~l~~~~l~~   90 (103)
                      -+.++|+||.++...+     ..    --...++++++.+.|.+++|+|  +..... ++.+...|+-.-
T Consensus        44 giAildL~G~~l~l~S-----~R----~~~~~evi~~I~~~G~PviVAtDV~p~P~~-V~Kia~~f~A~l  103 (138)
T PF04312_consen   44 GIAILDLDGELLDLKS-----SR----NMSRSEVIEWISEYGKPVIVATDVSPPPET-VKKIARSFNAVL  103 (138)
T ss_pred             EEEEEecCCcEEEEEe-----ec----CCCHHHHHHHHHHcCCEEEEEecCCCCcHH-HHHHHHHhCCcc
Confidence            4568899999998532     11    1357899999999999999999  555566 577777777543

>PRK10671 copA copper exporting ATPase; Provisional

Probab=96.61  E-value=0.0065  Score=47.70  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=51.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++++-.||++.-      ...-...++|++.+.+++|++.|++++++||.+... ++...+++|+.+++
T Consensus       629 g~~~v~va~~~~~~g------~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~-a~~ia~~lgi~~~~  693 (834)
T PRK10671        629 GATPVLLAVDGKAAA------LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTT-ANAIAKEAGIDEVI  693 (834)
T ss_pred             CCeEEEEEECCEEEE------EEEccCcchhhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCEEE
Confidence            355667777888663      112235678999999999999999999999999887 79999999997755

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=96.58  E-value=0.0052  Score=45.59  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=26.9

Q ss_pred             HHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCC
Q 034147           56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHS   90 (103)
Q Consensus        56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~   90 (103)
                      .++.+++.| +++++|.+++-. ++.+++. +|.+.
T Consensus       101 ~~~~~~~~g-~~vVVTAsPrvm-VEpFake~LG~D~  134 (498)
T PLN02499        101 AWKVFSSCD-KRVVVTRMPRVM-VERFAKEHLRADE  134 (498)
T ss_pred             HHHHHHcCC-eEEEEeCCHHHH-HHHHHHHhcCCce
Confidence            566777788 999999999877 6999998 77643

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=96.55  E-value=0.011  Score=43.96  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=24.9

Q ss_pred             HHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCc
Q 034147           56 ILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSM   91 (103)
Q Consensus        56 ~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~   91 (103)
                      .++.++++|.. +|+|+++... ++.+++. +|++..
T Consensus       115 a~~~~~~~g~~-vvVSASp~~~-Vepfa~~~LGid~V  149 (497)
T PLN02177        115 TWRVFNSFGKR-YIITASPRIM-VEPFVKTFLGADKV  149 (497)
T ss_pred             HHHHHHhCCCE-EEEECCcHHH-HHHHHHHcCCCCEE
Confidence            34455677755 8999999776 6999976 788653

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=96.40  E-value=0.01  Score=45.78  Aligned_cols=64  Identities=13%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+.+++-.|+++.-      --.-...+.|++.+.+++|++.|++++++||.+... +....+++|+++++
T Consensus       426 ~r~l~va~~~~~lG------~i~l~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~t-a~~iA~~lGI~~v~  489 (675)
T TIGR01497       426 GTPLVVCEDNRIYG------VIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLT-AAAIAAEAGVDDFI  489 (675)
T ss_pred             CeEEEEEECCEEEE------EEEecccchhHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCEEE
Confidence            46677766777664      122234688999999999999999999999999888 79999999997655

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=96.38  E-value=0.012  Score=38.51  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=33.7

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      -..++||.+.+.|++.+++|+++.|-|+++.+. ..-++.+-
T Consensus       100 lkahlypDav~~ik~wk~~g~~vyiYSSGSV~A-QkL~Fghs  140 (229)
T COG4229         100 LKAHLYPDAVQAIKRWKALGMRVYIYSSGSVKA-QKLFFGHS  140 (229)
T ss_pred             cccccCHhHHHHHHHHHHcCCcEEEEcCCCchh-HHHhhccc
Confidence            345789999999999999999999999999776 35555543

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.20  E-value=0.01  Score=45.93  Aligned_cols=62  Identities=27%  Similarity=0.298  Sum_probs=51.4

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ++++-.||.+.-.      -.-...+.|++.+.+++|++.|+++.++||-++.. ++...+++|++++.
T Consensus       519 ~v~va~dg~~~g~------i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~-A~~iA~~lGId~v~  580 (713)
T COG2217         519 VVFVAVDGKLVGV------IALADELRPDAKEAIAALKALGIKVVMLTGDNRRT-AEAIAKELGIDEVR  580 (713)
T ss_pred             EEEEEECCEEEEE------EEEeCCCChhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcChHhhe
Confidence            6788999976641      11234578999999999999999999999999888 89999999998765

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=96.14  E-value=0.012  Score=44.84  Aligned_cols=65  Identities=15%  Similarity=0.121  Sum_probs=43.8

Q ss_pred             CCceEEEeCCCCccccccccc---ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch--hHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECC---YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--DIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~---~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--~i~~~~l~~~   86 (103)
                      +-++|+.|+|||++..+.-..   .-++.. -..|+.++..+.+++||++..+|.+...  ..++.+|..+
T Consensus       529 n~kIVISDIDGTITKSDvLGh~lp~iGkDW-Th~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv  598 (738)
T KOG2116|consen  529 NDKIVISDIDGTITKSDVLGHVLPMIGKDW-THTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNV  598 (738)
T ss_pred             CCcEEEecCCCceEhhhhhhhhhhhhcCcc-hhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHH
Confidence            357789999999997542211   111111 2368999999999999999999988732  2245555544

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=96.00  E-value=0.03  Score=43.24  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+.+++-.|+++.-.      -.-...+.|++.+.+++|++.|+++..+||-+... ++...+++|+++++
T Consensus       425 ~~~l~va~~~~~lG~------i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGId~v~  488 (679)
T PRK01122        425 GTPLVVAEDNRVLGV------IYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLT-AAAIAAEAGVDDFL  488 (679)
T ss_pred             CcEEEEEECCeEEEE------EEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence            466666667777641      12234578999999999999999999999999888 89999999997654

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=95.81  E-value=0.019  Score=35.67  Aligned_cols=55  Identities=15%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..+-++++|+..          ..++|+.+.+.+++|++. +.+.|+|+-...++ .+..+..|++-
T Consensus        16 ~~~~~v~~tiat----------gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl-~~lae~~gi~~   70 (152)
T COG4087          16 SKAGKVLYTIAT----------GGKLFSEVSETIQELHDM-VDIYIASGDRKGSL-VQLAEFVGIPV   70 (152)
T ss_pred             eecceEEEEEcc----------CcEEcHhhHHHHHHHHHh-heEEEecCCcchHH-HHHHHHcCCce
Confidence            345688888886          467899999999999999 99999999998885 88888888753

>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists

Probab=95.79  E-value=0.051  Score=32.19  Aligned_cols=84  Identities=13%  Similarity=0.250  Sum_probs=57.2

Q ss_pred             cHHHhhHHHHHHhhccC------CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147            3 DLEKVKNEALEIIGQFE------NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~------~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      +++..++...+......      ..++.+++|+.++-.-          .........++.+.++.+|.++.++.-+  +
T Consensus        23 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~i----------Dssgi~~L~~~~~~~~~~g~~~~l~~~~--~   90 (117)
T PF01740_consen   23 NAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFI----------DSSGIQALVDIIKELRRRGVQLVLVGLN--P   90 (117)
T ss_dssp             HHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEE----------SHHHHHHHHHHHHHHHHTTCEEEEESHH--H
T ss_pred             HHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcC----------CHHHHHHHHHHHHHHHHCCCEEEEEECC--H
Confidence            35666777777776653      2368999999998442          1222245677889999999999987543  4


Q ss_pred             hHHHHHHHHcCCCCccccCeeee
Q 034147           77 DIAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        77 ~i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      . +...++..|+...+..+.+|.
T Consensus        91 ~-v~~~l~~~~~~~~~~~~~~~~  112 (117)
T PF01740_consen   91 D-VRRILERSGLIDFIPEDQIFP  112 (117)
T ss_dssp             H-HHHHHHHTTGHHHSCGGEEES
T ss_pred             H-HHHHHHHcCCChhcCCCCccC
Confidence            4 377799999877664445543

It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=95.68  E-value=0.025  Score=43.63  Aligned_cols=64  Identities=14%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+.++.-.|+++.-      --.-...+.|++.+.+++|++.|+++..+||-+... +....+++|+.++|
T Consensus       421 ~~~l~v~~~~~~lG------~i~l~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~T-A~aIA~elGI~~v~  484 (673)
T PRK14010        421 GTPLVVLEDNEILG------VIYLKDVIKDGLVERFRELREMGIETVMCTGDNELT-AATIAKEAGVDRFV  484 (673)
T ss_pred             CeEEEEEECCEEEE------EEEeecCCcHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCceEE
Confidence            34444333666553      112234688999999999999999999999999888 89999999997655

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=95.43  E-value=0.034  Score=40.99  Aligned_cols=54  Identities=19%  Similarity=0.213  Sum_probs=38.6

Q ss_pred             CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---------CCCCccccCeeeec
Q 034147           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSC  100 (103)
Q Consensus        44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---------~l~~~~~~~~i~~~  100 (103)
                      .+.....|....+|+++++.|.++.++||++... +...+..+         ++.++|  |.|++.
T Consensus       179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-t~~~M~yl~g~~~~~~~dW~dlF--DvVIv~  241 (448)
T PF05761_consen  179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDY-TNAVMSYLLGPFLGEDPDWRDLF--DVVIVD  241 (448)
T ss_dssp             CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHH-HHHHHHHHCGCCSSTTT-GGGCE--CEEEES
T ss_pred             HHHccCCchHHHHHHHHHhcCceEEEecCCCCch-hhhhhhhccCCCCCCCCChhhhe--eEEEEc
Confidence            3444556889999999999999999999999888 68888864         355678  777764

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=95.21  E-value=0.049  Score=42.52  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=39.8

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..++.|++.+.+++|++.|+++.++||-+... +....+++|+.+
T Consensus       440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~~  483 (755)
T TIGR01647       440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAI-AKETARRLGLGT  483 (755)
T ss_pred             cCCChhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCC
Confidence            34688999999999999999999999999888 899999999964

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>COG0731 Fe-S oxidoreductases [Energy production and conversion]

Probab=95.17  E-value=0.2  Score=35.05  Aligned_cols=64  Identities=23%  Similarity=0.395  Sum_probs=45.0

Q ss_pred             HhhHHHHHHhhccC---CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHH
Q 034147            6 KVKNEALEIIGQFE---NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKT   81 (103)
Q Consensus         6 ~~~~~~~~~~~~~~---~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~   81 (103)
                      .++++...+.+...   -.++.+.|-.+|=              +.++|...++++.+++.| ++++|+||+..+.+ ..
T Consensus        61 ~I~~~~~~~~~~~g~ea~~pd~vtis~~GE--------------PTLy~~L~elI~~~k~~g~~~tflvTNgslpdv-~~  125 (296)
T COG0731          61 SILEELKLLLGYKGDEATEPDHVTISLSGE--------------PTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDV-LE  125 (296)
T ss_pred             HHHHHHHHHhcccccccCCCCEEEEeCCCC--------------cccccCHHHHHHHHHhcCCceEEEEeCCChHHH-HH
Confidence            34455555555432   3567777766663              447789999999999999 79999999998663 44


Q ss_pred             HHH
Q 034147           82 FLH   84 (103)
Q Consensus        82 ~l~   84 (103)
                      .+.
T Consensus       126 ~L~  128 (296)
T COG0731         126 ELK  128 (296)
T ss_pred             Hhc
Confidence            443

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=95.00  E-value=0.072  Score=42.57  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=39.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++.|++.+.+++|++.|+++.++||-.... +....+.+|+..
T Consensus       578 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~iA~~~GI~~  620 (941)
T TIGR01517       578 DPLRPGVREAVQECQRAGITVRMVTGDNIDT-AKAIARNCGILT  620 (941)
T ss_pred             CCCchhHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCCC
Confidence            4688999999999999999999999999888 899999999863

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=94.90  E-value=0.015  Score=37.58  Aligned_cols=19  Identities=21%  Similarity=-0.008  Sum_probs=15.1

Q ss_pred             CceEEEeCCCCcccccccc
Q 034147           22 PRLVVFDLDYTLWPFYCEC   40 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~   40 (103)
                      +++++||.||||++....+
T Consensus         1 i~~i~fDktGTLt~~~~~v   19 (215)
T PF00702_consen    1 IDAICFDKTGTLTQGKMSV   19 (215)
T ss_dssp             ESEEEEECCTTTBESHHEE
T ss_pred             CeEEEEecCCCcccCeEEE
Confidence            4689999999999865443

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=94.88  E-value=0.02  Score=42.11  Aligned_cols=58  Identities=12%  Similarity=0.064  Sum_probs=38.1

Q ss_pred             CCCCceEEEeCCCCccccccccc--c-cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECC--Y-EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~--~-~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~   77 (103)
                      ..+.+++++|+||||+..+.-.+  . -++. --..|+..+.-..-.+|+++.-.|+++...
T Consensus       372 r~n~kiVVsDiDGTITkSD~~Ghv~~miGkd-wth~gVAkLYtdI~rNGYkI~YltsR~~Gq  432 (580)
T COG5083         372 RNNKKIVVSDIDGTITKSDALGHVKQMIGKD-WTHNGVAKLYTDIDRNGYKIKYLTSRSYGQ  432 (580)
T ss_pred             eCCCcEEEEecCCcEEehhhHHHHHHHhccc-hhhcchhhhhhhhccCceEEEEEecccccc
Confidence            45678999999999997432100  0 0110 112466777777788999999999888543

>TIGR02886 spore_II_AA anti-sigma F factor antagonist

Probab=94.88  E-value=0.36  Score=28.03  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~   82 (103)
                      .++..++...+.+..  ...+.+++|+-++=.-.          ..-......+.++++++|..+.++.-++  . +...
T Consensus        22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~iD----------ssgi~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~~   86 (106)
T TIGR02886        22 TAERVRRKIDDAIER--RPIKHLILNLKNVTFMD----------SSGLGVILGRYKKIKNEGGEVIVCNVSP--A-VKRL   86 (106)
T ss_pred             hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEec----------chHHHHHHHHHHHHHHcCCEEEEEeCCH--H-HHHH
Confidence            345566666665543  24678999999985421          1111234567888999999998775444  4 4788


Q ss_pred             HHHcCCCCcc
Q 034147           83 LHKLGIHSMF   92 (103)
Q Consensus        83 l~~~~l~~~~   92 (103)
                      ++..|+.+.+
T Consensus        87 l~~~gl~~~~   96 (106)
T TIGR02886        87 FELSGLFKII   96 (106)
T ss_pred             HHHhCCceEE
Confidence            9999988765

The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=94.79  E-value=0.015  Score=36.99  Aligned_cols=13  Identities=46%  Similarity=0.452  Sum_probs=11.3

Q ss_pred             EEEeCCCCccccc
Q 034147           25 VVFDLDYTLWPFY   37 (103)
Q Consensus        25 ~~fD~DGTL~~~~   37 (103)
                      ++||+||||+..+
T Consensus         1 v~fD~DGTL~~~~   13 (192)
T PF12710_consen    1 VIFDFDGTLTDSD   13 (192)
T ss_dssp             EEEESBTTTBSSH
T ss_pred             eEEecCcCeecCC
Confidence            6899999999854

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=94.76  E-value=0.063  Score=43.18  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++++++|+++.++||++... +....+.+|+.
T Consensus       567 Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~t-a~~ia~~~gi~  608 (997)
T TIGR01106       567 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII  608 (997)
T ss_pred             CCChHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            4678999999999999999999999999888 79999999984

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=94.67  E-value=0.085  Score=42.10  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++.+++.+.+++|++.|+++.++||..... +....+++|+..
T Consensus       536 Dplr~~v~e~I~~l~~aGI~v~miTGD~~~t-A~~ia~~~gi~~  578 (917)
T TIGR01116       536 DPPRPEVADAIEKCRTAGIRVIMITGDNKET-AEAICRRIGIFS  578 (917)
T ss_pred             CCCchhHHHHHHHHHHCCCEEEEecCCCHHH-HHHHHHHcCCCC
Confidence            4688999999999999999999999999777 799999999854

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR00815 sulP high affinity sulphate transporter 1

Probab=94.60  E-value=0.35  Score=36.61  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=54.5

Q ss_pred             cHHHhhHHHHHHhh------ccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147            3 DLEKVKNEALEIIG------QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus         3 ~~~~~~~~~~~~~~------~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      +++..+++..+.+.      ......+.+++|+.++-.-          .........++.++++++|+.+.++.-+  +
T Consensus       469 na~~~~~~l~~~~~~~~~~~~~~~~~~~vIlD~~~V~~i----------DsSg~~~L~~l~~~l~~~g~~l~l~~~~--~  536 (563)
T TIGR00815       469 NAEDLKDRLLKRIEDETRRELERPPLQVVILDMSAVPHL----------DTSGIHALEELRKELKARGIQLLLANPN--K  536 (563)
T ss_pred             cHHHHHHHHHHHHhhhccccccCCCceEEEEECCCCCcc----------hHHHHHHHHHHHHHHHHcCCEEEEecCC--h
Confidence            45666666655554      2222358899999886432          1122345677888999999999877544  3


Q ss_pred             hHHHHHHHHcCCCCccccCeeee
Q 034147           77 DIAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        77 ~i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      . .++.+++.|+.+.+..+.++.
T Consensus       537 ~-v~~~l~~~gl~~~~~~~~~f~  558 (563)
T TIGR00815       537 A-VRSTLKRGGLVELIGEEHFFP  558 (563)
T ss_pred             H-HHHHHHHCCchhhcCCcceeC
Confidence            4 488899999887664445554

(2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=94.46  E-value=0.19  Score=40.72  Aligned_cols=53  Identities=25%  Similarity=0.318  Sum_probs=39.4

Q ss_pred             CceEE--EeCCCCcccccccccccCCCcccChhHHHHHHHHH----HCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           22 PRLVV--FDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALK----EKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        22 ~~~~~--fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~----~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++++  .|+|+| ..             ..+.+.++++.++    +..+-++++||++... +...++..++.
T Consensus       770 ~~~~via~D~d~~-~~-------------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~-~~~~l~~~~lp  828 (1050)
T TIGR02468       770 KRLFVIAVDCYDD-KD-------------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISE-IQSFLKSGGLN  828 (1050)
T ss_pred             ceEEEEEeccCCC-CC-------------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHH-HHHHHHhCCCC
Confidence            45555  799999 32             1245667777776    2337899999999998 69999999986

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation

Probab=94.44  E-value=0.53  Score=27.43  Aligned_cols=72  Identities=24%  Similarity=0.249  Sum_probs=47.0

Q ss_pred             HHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      ++..+++..+....  ...+.+++|+-|+-+-.          ..-..-..++.++++++|..+.++.-++  . +...+
T Consensus        25 a~~~~~~l~~~~~~--~~~~~vvlDls~v~~iD----------ssg~~~l~~~~~~~~~~g~~l~l~g~~~--~-v~~~l   89 (109)
T cd07041          25 AEQLQERLLEAISR--RRARGVIIDLTGVPVID----------SAVARHLLRLARALRLLGARTILTGIRP--E-VAQTL   89 (109)
T ss_pred             HHHHHHHHHHHHHH--cCCCEEEEECCCCchhc----------HHHHHHHHHHHHHHHHcCCeEEEEeCCH--H-HHHHH
Confidence            44555555554432  24678999998886531          1122345667788889999998775444  4 37788


Q ss_pred             HHcCCCC
Q 034147           84 HKLGIHS   90 (103)
Q Consensus        84 ~~~~l~~   90 (103)
                      +..|+..
T Consensus        90 ~~~gl~~   96 (109)
T cd07041          90 VELGIDL   96 (109)
T ss_pred             HHhCCCh
Confidence            9988865

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]

Probab=94.32  E-value=0.14  Score=40.60  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=41.4

Q ss_pred             CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +...+|.+++.+.++.+++.|++|..+||-.... |..+.++.|+...
T Consensus       580 Gi~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~T-A~AI~r~iGi~~~  626 (972)
T KOG0202|consen  580 GILDPPRPEVADAIELCRQAGIRVIMITGDNKET-AEAIAREIGIFSE  626 (972)
T ss_pred             eccCCCchhHHHHHHHHHHcCCEEEEEcCCCHHH-HHHHHHHhCCCcC
Confidence            3445788999999999999999999999999888 8999999997654

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=94.23  E-value=0.16  Score=36.16  Aligned_cols=56  Identities=20%  Similarity=0.046  Sum_probs=41.4

Q ss_pred             CceEEEeCCCCccccccccc---------ccCCCcccChhHHHHHHHHHHCC-CeEEEEeCCCchh
Q 034147           22 PRLVVFDLDYTLWPFYCECC---------YEDEIPYLYPHAKGILEALKEKG-IHVAVASRSPAPD   77 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~---------~~~~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~   77 (103)
                      .-.++.|+|.|+...+.--.         .......++||+..+.+.|...| .++..+||++...
T Consensus       161 ~igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~  226 (373)
T COG4850         161 GIGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQL  226 (373)
T ss_pred             ceeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHh
Confidence            34578899999987543211         11223458899999999999988 8999999999543

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=94.22  E-value=0.11  Score=41.24  Aligned_cols=42  Identities=21%  Similarity=0.220  Sum_probs=38.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus       514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~t-A~aIA~~lGI~  555 (867)
T TIGR01524       514 DPPKESTKEAIAALFKNGINVKVLTGDNEIV-TARICQEVGID  555 (867)
T ss_pred             CCCchhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            4678999999999999999999999999877 89999999995

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=94.19  E-value=0.13  Score=40.94  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..-++.+=+||+|+-..      .-...+.|++...++.|++.|++++.+||-+... ++...++.|++..+
T Consensus       702 g~tvv~v~vn~~l~gv~------~l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~a-A~svA~~VGi~~V~  766 (951)
T KOG0207|consen  702 GQTVVYVAVNGQLVGVF------ALEDQVRPDAALAVAELKSMGIKVVMLTGDNDAA-ARSVAQQVGIDNVY  766 (951)
T ss_pred             CceEEEEEECCEEEEEE------EeccccchhHHHHHHHHHhcCceEEEEcCCCHHH-HHHHHHhhCcceEE
Confidence            35567889999998632      2234577999999999999999999999999888 89999999965543

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=94.06  E-value=0.12  Score=41.32  Aligned_cols=42  Identities=21%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus       549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~~IA~~lGI~  590 (902)
T PRK10517        549 DPPKETTAPALKALKASGVTVKILTGDSELV-AAKVCHEVGLD  590 (902)
T ss_pred             CcchhhHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            4678999999999999999999999999887 89999999995

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=93.78  E-value=0.13  Score=41.01  Aligned_cols=43  Identities=19%  Similarity=0.250  Sum_probs=39.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ..++.|++.+.+++|++.|+++.++||-+... +....+++|+.
T Consensus       548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~t-A~aIA~~lGI~  590 (903)
T PRK15122        548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIV-TAKICREVGLE  590 (903)
T ss_pred             cCccHHHHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            34688999999999999999999999999887 89999999995

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=93.55  E-value=0.17  Score=41.03  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++|++.|+++.++||..... +....+.+|+.
T Consensus       645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~t-A~~iA~~~Gi~  686 (1053)
T TIGR01523       645 DPPRNESAGAVEKCHQAGINVHMLTGDFPET-AKAIAQEVGII  686 (1053)
T ss_pred             cCCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence            3678999999999999999999999999888 89999999985

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=93.48  E-value=0.12  Score=32.62  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRS   73 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~   73 (103)
                      ..+.|++.+++++|-+. +.+.|+|..
T Consensus        67 L~V~p~aq~v~keLt~~-y~vYivtaa   92 (180)
T COG4502          67 LGVQPFAQTVLKELTSI-YNVYIVTAA   92 (180)
T ss_pred             cCccccHHHHHHHHHhh-heEEEEEec
Confidence            45779999999999997 899999965

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=93.03  E-value=0.23  Score=40.34  Aligned_cols=41  Identities=22%  Similarity=0.297  Sum_probs=37.8

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ++.|++.+.++.|++.|+++.++||.+... +....++.|+.
T Consensus       656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~T-A~~iA~~~gii  696 (1054)
T TIGR01657       656 PLKPDTKEVIKELKRASIRTVMITGDNPLT-AVHVARECGIV  696 (1054)
T ss_pred             CCCccHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCC
Confidence            578999999999999999999999999888 78899999984

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=92.82  E-value=0.29  Score=39.19  Aligned_cols=45  Identities=22%  Similarity=0.222  Sum_probs=40.2

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ..+|.+++.+.++.|++.|+++..+||-.... |....+++|+..-
T Consensus       545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~T-A~aIa~~~Gi~~~  589 (917)
T COG0474         545 EDPPREDVKEAIEELREAGIKVWMITGDHVET-AIAIAKECGIEAE  589 (917)
T ss_pred             cCCCCccHHHHHHHHHHCCCcEEEECCCCHHH-HHHHHHHcCCCCC
Confidence            45788999999999999999999999999887 8999999997653

>TIGR00377 ant_ant_sig anti-anti-sigma factor

Probab=92.65  E-value=1.2  Score=25.74  Aligned_cols=73  Identities=16%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             HHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147            5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      ...++...+....  ..++.+++|+.++=.-.          .....-..++.++++++|..+.++.-++  . ....++
T Consensus        28 ~~~~~~l~~~~~~--~~~~~vvidls~v~~iD----------ssgl~~L~~~~~~~~~~~~~~~l~~~~~--~-~~~~l~   92 (108)
T TIGR00377        28 PLLREKVTPAAER--TGPRPIVLDLEDLEFMD----------SSGLGVLLGRYKQVRRVGGQLVLVSVSP--R-VARLLD   92 (108)
T ss_pred             HHHHHHHHHHHHh--cCCCeEEEECCCCeEEc----------cccHHHHHHHHHHHHhcCCEEEEEeCCH--H-HHHHHH
Confidence            4445545454443  35778999999874421          1122345667778899998887765433  4 377899


Q ss_pred             HcCCCCcc
Q 034147           85 KLGIHSMF   92 (103)
Q Consensus        85 ~~~l~~~~   92 (103)
                      ..|+...+
T Consensus        93 ~~~l~~~~  100 (108)
T TIGR00377        93 ITGLLRII  100 (108)
T ss_pred             HhChhhee
Confidence            99987755

This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=92.51  E-value=0.29  Score=33.72  Aligned_cols=65  Identities=22%  Similarity=0.195  Sum_probs=37.6

Q ss_pred             EEEeCCCCccccccccc-----------------ccCCCcccChhHHHHHHHHHHC------CCeEEEEeCCCchhH--H
Q 034147           25 VVFDLDYTLWPFYCECC-----------------YEDEIPYLYPHAKGILEALKEK------GIHVAVASRSPAPDI--A   79 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~-----------------~~~~~~~~~~g~~~~l~~l~~~------G~~v~i~T~~~~~~i--~   79 (103)
                      |+||-|++|.+.++.--                 ..+-..=|+......|.+++++      -++++++|.++.+.-  +
T Consensus       124 IAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~Rv  203 (264)
T PF06189_consen  124 IAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERV  203 (264)
T ss_pred             EEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHH
Confidence            89999999998543310                 1111112444455566666654      478999997764331  2


Q ss_pred             HHHHHHcCCC
Q 034147           80 KTFLHKLGIH   89 (103)
Q Consensus        80 ~~~l~~~~l~   89 (103)
                      -..++.+|+.
T Consensus       204 I~TLr~Wgv~  213 (264)
T PF06189_consen  204 IRTLRSWGVR  213 (264)
T ss_pred             HHHHHHcCCc
Confidence            3445566654

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors

Probab=91.85  E-value=1.5  Score=25.19  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~   82 (103)
                      +++..++...+....  ...+.+++|+-++=+-          ...-.....++.+.++++|..+.++.-+  +. +...
T Consensus        22 ~~~~~~~~l~~~~~~--~~~~~vilDls~v~~i----------Dssgl~~L~~l~~~~~~~g~~l~l~~~~--~~-v~~~   86 (100)
T cd06844          22 SVEQFKEELLHNITN--VAGKTIVIDISALEFM----------DSSGTGVLLERSRLAEAVGGQFVLTGIS--PA-VRIT   86 (100)
T ss_pred             hHHHHHHHHHHHHHh--CCCCEEEEECCCCcEE----------cHHHHHHHHHHHHHHHHcCCEEEEECCC--HH-HHHH
Confidence            455566665554432  2467899999887543          1112234567788899999999887544  44 4778


Q ss_pred             HHHcCCCCc
Q 034147           83 LHKLGIHSM   91 (103)
Q Consensus        83 l~~~~l~~~   91 (103)
                      ++..|+...
T Consensus        87 l~~~gl~~~   95 (100)
T cd06844          87 LTESGLDKG   95 (100)
T ss_pred             HHHhCchhh
Confidence            898887653

The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=91.75  E-value=0.49  Score=35.14  Aligned_cols=61  Identities=26%  Similarity=0.247  Sum_probs=46.6

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ..+++++=.++++.-.      ..-...+.+++.+.+++|++.|+++.++||..... +....+.+|+
T Consensus       326 g~~~~~~a~~~~~~g~------i~l~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~-a~~ia~~lgi  386 (499)
T TIGR01494       326 GLRVLAVASKETLLGL------LGLEDPLRDDAKETISELREAGIRVIMLTGDNVLT-AKAIAKELGI  386 (499)
T ss_pred             CCEEEEEEECCeEEEE------EEecCCCchhHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCc
Confidence            3455555567766531      12234678999999999999999999999999887 7888888876

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice

Probab=90.69  E-value=0.42  Score=32.68  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ...+.+|+.++++.|+++++|+.|.|++-... .+..+++.+.
T Consensus        88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdv-I~~vL~q~~~  129 (246)
T PF05822_consen   88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDV-IEEVLRQAGV  129 (246)
T ss_dssp             ---B-BTHHHHHHHHHCTT--EEEEEEEEHHH-HHHHHHHTT-
T ss_pred             chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHH-HHHHHHHcCC
Confidence            35678999999999999999999999888666 5888998754

The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=1.6  Score=33.49  Aligned_cols=64  Identities=19%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe--CCCchhHHHHHHHHcCCCCccccCee
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T--~~~~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      -+.++|+||-+++..+     ...    -...++++...+.|.|++|+|  +..+.. +..+...|+- ..|+++.-
T Consensus       256 giAvldldGevl~~~S-----~r~----~~~~eVve~I~~lG~PvvVAtDVtp~P~~-V~KiAasf~A-~ly~P~~d  321 (652)
T COG2433         256 GIAVLDLDGEVLDLES-----RRG----IDRSEVVEFISELGKPVVVATDVTPAPET-VKKIAASFNA-VLYTPDRD  321 (652)
T ss_pred             eEEEEecCCcEEeeec-----ccc----CCHHHHHHHHHHcCCceEEEccCCCChHH-HHHHHHHcCC-cccCCccc
Confidence            4568899999998532     111    134678889999999999999  444566 5888888875 34444443

>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=89.96  E-value=0.24  Score=35.78  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      -|....++++|+++|.++.++||++... +..-++.+
T Consensus       242 ~~ql~~fl~kL~~~GKklFLiTNSPysF-Vd~GM~fl  277 (510)
T KOG2470|consen  242 NPQLLAFLRKLKDHGKKLFLITNSPYSF-VDKGMRFL  277 (510)
T ss_pred             cHHHHHHHHHHHHhcCcEEEEeCCchhh-hhcCceee
Confidence            3677889999999999999999999888 47665543

>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation

Probab=89.50  E-value=2.4  Score=23.69  Aligned_cols=72  Identities=18%  Similarity=0.280  Sum_probs=45.0

Q ss_pred             HHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147            5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +..++........   .++.+++|+.++=.-          ......-..++.++++++|..+.++.-+  +. ....++
T Consensus        24 ~~~~~~~~~~~~~---~~~~viid~~~v~~i----------Ds~g~~~L~~l~~~~~~~g~~v~i~~~~--~~-~~~~l~   87 (99)
T cd07043          24 PELREALEELLAE---GPRRLVLDLSGVTFI----------DSSGLGVLLGAYKRARAAGGRLVLVNVS--PA-VRRVLE   87 (99)
T ss_pred             HHHHHHHHHHHHc---CCCEEEEECCCCCEE----------cchhHHHHHHHHHHHHHcCCeEEEEcCC--HH-HHHHHH
Confidence            3444444443332   257789999987432          1112234667888889999887765433  35 488899


Q ss_pred             HcCCCCcc
Q 034147           85 KLGIHSMF   92 (103)
Q Consensus        85 ~~~l~~~~   92 (103)
                      ..|+...+
T Consensus        88 ~~gl~~~~   95 (99)
T cd07043          88 LTGLDRLF   95 (99)
T ss_pred             HhCcceee
Confidence            99987655

Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=89.44  E-value=0.66  Score=37.75  Aligned_cols=43  Identities=19%  Similarity=0.139  Sum_probs=37.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++.+++.+.++.|++.|+++.++||-.... |....+..|+-.
T Consensus       630 D~lq~~v~etI~~L~~AGIkv~mlTGD~~~T-A~~IA~~~~ii~  672 (1057)
T TIGR01652       630 DKLQEGVPETIELLRQAGIKIWVLTGDKVET-AINIGYSCRLLS  672 (1057)
T ss_pred             hhhhhccHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCCCC
Confidence            4678999999999999999999999999877 788888888754

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=89.40  E-value=1  Score=32.96  Aligned_cols=42  Identities=14%  Similarity=0.147  Sum_probs=30.8

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---CCCCcc
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMF   92 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---~l~~~~   92 (103)
                      .+..+.++..+++.|.+..+.||+.... +...+...   ++..+|
T Consensus       200 d~~~v~~l~~~r~sGKk~fl~Tns~~~y-td~~mt~~~~~dW~~yf  244 (424)
T KOG2469|consen  200 DGTIVPLLSMLRDSGKKTFLHTNSDWDY-TDIFMAFHYGFDWETYF  244 (424)
T ss_pred             cCccccchHHHHhhccceEEeeccccch-hhHHHHHHhCCCcceeE
Confidence            3445558889999999999999998776 56666542   455667

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=89.03  E-value=1.2  Score=30.56  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ++++.++++.|+++|+ ++|+||++.
T Consensus       145 y~~i~~~l~~L~~~g~-~~i~Tn~d~  169 (279)
T TIGR01452       145 YAKLREACAHLREPGC-LFVATNRDP  169 (279)
T ss_pred             HHHHHHHHHHHhcCCC-EEEEeCCCC
Confidence            5899999999998887 788998775

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]

Probab=88.64  E-value=3.5  Score=24.43  Aligned_cols=71  Identities=20%  Similarity=0.258  Sum_probs=44.6

Q ss_pred             hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      .++..++.+...  ..+.+++|+.|+=+-.          .....-....++.++..|..+++++-++  .+ ...+...
T Consensus        31 ~~e~~~~~~~~~--~~~~ivIDls~v~~~d----------S~gl~~L~~~~~~~~~~g~~~~l~~i~p--~v-~~~~~~~   95 (117)
T COG1366          31 LKETLLEVIAAS--GARGLVIDLSGVDFMD----------SAGLGVLVALLKSARLRGVELVLVGIQP--EV-ARTLELT   95 (117)
T ss_pred             HHHHHHHHHhcC--CCcEEEEECCCCceec----------hHHHHHHHHHHHHHHhcCCeEEEEeCCH--HH-HHHHHHh
Confidence            444444444332  2344999999985531          1111234556788899998888776655  33 7789999


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |+...|
T Consensus        96 gl~~~~  101 (117)
T COG1366          96 GLDKSF  101 (117)
T ss_pred             Cchhhc
Confidence            987654

>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []

Probab=88.45  E-value=4.7  Score=25.61  Aligned_cols=65  Identities=9%  Similarity=0.052  Sum_probs=43.1

Q ss_pred             hHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHc
Q 034147            8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +.+...+++...++-.++++|..|-.+++              ++..+.|+.+...|. .++++=|++... .+...++.
T Consensus        54 ~~E~~~il~~i~~~~~~i~Ld~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~F~IGG~~G~-~~~~~~~a  118 (155)
T PF02590_consen   54 EKEGERILKKIPPNDYVILLDERGKQLSS--------------EEFAKKLERWMNQGKSDIVFIIGGADGL-SEEVRKRA  118 (155)
T ss_dssp             HHHHHHHHCTSHTTSEEEEE-TTSEE--H--------------HHHHHHHHHHHHTTS-EEEEEE-BTTB---HHHHHH-
T ss_pred             HHHHHHHHhhccCCCEEEEEcCCCccCCh--------------HHHHHHHHHHHhcCCceEEEEEecCCCC-CHHHHhhc
Confidence            34555566666667778999999999973              578889999888887 888888887655 45555554


Q ss_pred             C
Q 034147           87 G   87 (103)
Q Consensus        87 ~   87 (103)
                      +
T Consensus       119 ~  119 (155)
T PF02590_consen  119 D  119 (155)
T ss_dssp             S
T ss_pred             C
Confidence            3

; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=87.72  E-value=0.2  Score=34.51  Aligned_cols=66  Identities=20%  Similarity=0.098  Sum_probs=46.8

Q ss_pred             CCceEEEeCCCCcccccc--cc--c---------c-c--CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYC--EC--C---------Y-E--DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~--~~--~---------~-~--~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      ..+.+++|+|+||+-...  ..  .         + .  .-.+.-.|++.++|...-+. +.+++.|++.... +.+.+.
T Consensus        88 ~kk~lVLDLDeTLvHss~~~~~~~~~d~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Y-a~~v~D  165 (262)
T KOG1605|consen   88 GRKTLVLDLDETLVHSSLNLKPIVNADFTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKW-YELVLFTASLEVY-ADPLLD  165 (262)
T ss_pred             CCceEEEeCCCcccccccccCCCCCcceeeeeeeCCcceEEEEEcCCCHHHHHHHhHHH-HHHHHHHhhhHHH-HHHHHH
Confidence            468899999999886542  10  0         0 0  11124468999999998886 7888889888777 788888


Q ss_pred             HcCC
Q 034147           85 KLGI   88 (103)
Q Consensus        85 ~~~l   88 (103)
                      .++-
T Consensus       166 ~LD~  169 (262)
T KOG1605|consen  166 ILDP  169 (262)
T ss_pred             HccC
Confidence            7764

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=87.71  E-value=1.4  Score=26.14  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           51 PHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      +.+.+.++.++++|.+++.+|+++...+
T Consensus        60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~l   87 (126)
T cd05008          60 ADTLAALRLAKEKGAKTVAITNVVGSTL   87 (126)
T ss_pred             HHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence            5789999999999999999999876654

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>COG1576 Uncharacterized conserved protein [Function unknown]

Probab=87.68  E-value=4.9  Score=25.61  Aligned_cols=63  Identities=14%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             hhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147            7 VKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      .+++...+++...+...++++|..|-.+.+              +...+.++.++..|-.++++=|++... ...+++
T Consensus        53 ~~~E~~~il~~i~~~~~vi~Ld~~Gk~~sS--------------e~fA~~l~~~~~~G~~i~f~IGG~~Gl-~~~~~~  115 (155)
T COG1576          53 KKKEGEAILAAIPKGSYVVLLDIRGKALSS--------------EEFADFLERLRDDGRDISFLIGGADGL-SEAVKA  115 (155)
T ss_pred             HHHHHHHHHHhcCCCCeEEEEecCCCcCCh--------------HHHHHHHHHHHhcCCeEEEEEeCcccC-CHHHHH
Confidence            456667777777777799999999999963              578889999999996777777666433 233344

>PRK04531 acetylglutamate kinase; Provisional

Probab=87.68  E-value=3.2  Score=30.38  Aligned_cols=77  Identities=19%  Similarity=0.216  Sum_probs=55.7

Q ss_pred             hhHHHHHHhhccCC--CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147            7 VKNEALEIIGQFEN--LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         7 ~~~~~~~~~~~~~~--~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      ++.++++.++....  .++.++.-+.|.++..            ..+....-|..|++.|.+++|+=|+. +.+ ...++
T Consensus        19 ~~~e~~~~l~~F~~~~~~~~~VIKiGG~~l~~------------~~~~l~~dla~L~~~G~~~VlVHGgg-pqI-~~~l~   84 (398)
T PRK04531         19 SAKEISQYLKRFSQLDAERFAVIKVGGAVLRD------------DLEALASSLSFLQEVGLTPIVVHGAG-PQL-DAELD   84 (398)
T ss_pred             ChhhhHHHHHHHhCcCCCcEEEEEEChHHhhc------------CHHHHHHHHHHHHHCCCcEEEEECCC-HHH-HHHHH
Confidence            34555555555443  3578899999998851            12667788888999999999999888 554 89999


Q ss_pred             HcCCCCccccCee
Q 034147           85 KLGIHSMFVPMVR   97 (103)
Q Consensus        85 ~~~l~~~~~~~~i   97 (103)
                      ..|++.-|.+..-
T Consensus        85 ~~gie~~~v~G~R   97 (398)
T PRK04531         85 AAGIEKETVNGLR   97 (398)
T ss_pred             HcCCCcEEECCEe
Confidence            9999876543333

>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=86.89  E-value=2.3  Score=26.70  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ..+.+.++++.++++|+++.+-||...+.+.+..++.+
T Consensus        73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~i  110 (147)
T TIGR02826        73 NREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHL  110 (147)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhC
Confidence            34678999999999999999999876544334444443

Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.

>cd05014 SIS_Kpsf KpsF-like protein

Probab=86.86  E-value=1.4  Score=26.24  Aligned_cols=29  Identities=17%  Similarity=0.334  Sum_probs=25.1

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      .+.+.++++.++++|.+++.+|+.+...+
T Consensus        60 t~~~~~~~~~a~~~g~~vi~iT~~~~s~l   88 (128)
T cd05014          60 TDELLNLLPHLKRRGAPIIAITGNPNSTL   88 (128)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence            36789999999999999999998876664

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=85.90  E-value=0.25  Score=33.12  Aligned_cols=41  Identities=5%  Similarity=0.029  Sum_probs=30.1

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ++++.++++.++++|+++ |+||.+... .......++...++
T Consensus       140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~-~~~~~~~~~~g~~~  180 (242)
T TIGR01459       140 LDEFDELFAPIVARKIPN-ICANPDRGI-NQHGIYRYGAGYYA  180 (242)
T ss_pred             HHHHHHHHHHHHhCCCcE-EEECCCEec-cCCCceEecccHHH
Confidence            689999999999899997 889988665 34445555554433

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus

Probab=85.83  E-value=2.1  Score=29.76  Aligned_cols=62  Identities=19%  Similarity=0.462  Sum_probs=37.8

Q ss_pred             hHHHHHHhhccCC---CCceEEEeCCCCcc-------cccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC
Q 034147            8 KNEALEIIGQFEN---LPRLVVFDLDYTLW-------PFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR   72 (103)
Q Consensus         8 ~~~~~~~~~~~~~---~~~~~~fD~DGTL~-------~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~   72 (103)
                      .++++++++....   ..+++.+|+|=.-.       +.+..+.-   ....||...+++++|+++|.++++...
T Consensus        24 ~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~---d~~~FPdp~~mi~~Lh~~G~k~v~~v~   95 (292)
T cd06595          24 DEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSW---NRKLFPDPEKLLQDLHDRGLKVTLNLH   95 (292)
T ss_pred             HHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEE---ChhcCCCHHHHHHHHHHCCCEEEEEeC
Confidence            3445555554443   35889999872111       01101011   124678999999999999999988773

Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.

>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins

Probab=85.79  E-value=1.6  Score=24.62  Aligned_cols=32  Identities=16%  Similarity=0.157  Sum_probs=23.5

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCccc
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWP   35 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~   35 (103)
                      .++.+++.+.+.++.... .--++++-|||.++
T Consensus        22 sL~EL~~K~~~~l~~~~~-~~~lvL~eDGT~Vd   53 (78)
T cd06539          22 SLQELISKTLDALVITSG-LVTLVLEEDGTVVD   53 (78)
T ss_pred             CHHHHHHHHHHHhCCCCC-CcEEEEeCCCCEEc
Confidence            456777777777776543 34488999999997

The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.

>PRK11660 putative transporter; Provisional

Probab=85.56  E-value=6.2  Score=30.04  Aligned_cols=70  Identities=17%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~   82 (103)
                      +++..+++..+..    +..+.+++|+.++-.-          .........++.+++++ |.++.++.=++  . +.+.
T Consensus       476 n~~~l~~~l~~~~----~~~~~VVlD~~~V~~i----------Dssg~~~L~~l~~~l~~-g~~l~l~~l~~--~-v~~~  537 (568)
T PRK11660        476 AAERLFTELESRT----EGKRIVVLQWDAVPVL----------DAGGLDAFQRFVKRLPE-GCELRICNLQF--Q-PLRT  537 (568)
T ss_pred             eHHHHHHHHHhhC----CCCCEEEEEcCCCCcc----------cHHHHHHHHHHHHHHHC-CCEEEEecCCh--H-HHHH
Confidence            3444555444433    4567799999886432          12233456778889999 99988775444  4 3778


Q ss_pred             HHHcCCCC
Q 034147           83 LHKLGIHS   90 (103)
Q Consensus        83 l~~~~l~~   90 (103)
                      +++.|+.+
T Consensus       538 l~~~gl~~  545 (568)
T PRK11660        538 LARAGIQP  545 (568)
T ss_pred             HHHCCChh
Confidence            88887755

>PLN03190 aminophospholipid translocase; Provisional

Probab=84.83  E-value=2.3  Score=35.23  Aligned_cols=42  Identities=19%  Similarity=0.132  Sum_probs=35.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.+++.+.++.|++.|+++.++||-.... +.......++-
T Consensus       725 D~lr~~v~~~I~~l~~agi~v~mlTGD~~~t-Ai~IA~s~~Ll  766 (1178)
T PLN03190        725 DKLQQGVPEAIESLRTAGIKVWVLTGDKQET-AISIGYSSKLL  766 (1178)
T ss_pred             cCCchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCC
Confidence            3688999999999999999999999988766 66666666653

>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5

Probab=84.76  E-value=1.1  Score=30.08  Aligned_cols=25  Identities=32%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           53 AKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        53 ~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      +.++|++|+++ +.++|+||+..+.+
T Consensus         1 M~~~L~~L~~~-~~vgvVgGsd~~k~   25 (220)
T PF03332_consen    1 MAELLQKLRKK-VPVGVVGGSDLPKI   25 (220)
T ss_dssp             HHHHHHHHHTT-SEEEEEESS-HHHH
T ss_pred             CHHHHHHHHhc-CeEEEEcchhHHHH
Confidence            46889999986 99999999997664

4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.

>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation

Probab=84.52  E-value=2.3  Score=23.70  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=23.6

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccc
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF   36 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~   36 (103)
                      .++.+++-+.+.++.... .-.++++-|||.++.
T Consensus        20 sL~eL~~K~~~~l~l~~~-~~~l~L~eDGT~Vdd   52 (74)
T smart00266       20 SLEELLSKVCDKLALPDS-PVTLVLEEDGTIVDD   52 (74)
T ss_pred             CHHHHHHHHHHHhCCCCC-CcEEEEecCCcEEcc
Confidence            356677777777776544 334889999999973

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=84.52  E-value=2.9  Score=30.36  Aligned_cols=66  Identities=18%  Similarity=0.053  Sum_probs=49.6

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +-.+++|+.++|+-.++.+. .+....-.||+..++.++. +.+.+++.|+..... +..+++.++-..
T Consensus       189 ~yTLVleledvLVhpdws~~-tGwRf~kRPgvD~FL~~~a-~~yEIVi~sse~gmt-~~pl~d~lDP~g  254 (393)
T KOG2832|consen  189 PYTLVLELEDVLVHPDWSYK-TGWRFKKRPGVDYFLGHLA-KYYEIVVYSSEQGMT-VFPLLDALDPKG  254 (393)
T ss_pred             CceEEEEeeeeEeccchhhh-cCceeccCchHHHHHHhhc-ccceEEEEecCCccc-hhhhHhhcCCcc
Confidence            34589999999987544322 3444456699999999998 459999999999777 688888876443

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=84.18  E-value=0.14  Score=34.80  Aligned_cols=43  Identities=9%  Similarity=-0.017  Sum_probs=29.8

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++..+.++.|++.+++++++||++... .......+++..+|
T Consensus       121 ~y~~l~~a~~~L~~~~~~~~iatn~~~~~-~~~~~~~~g~g~~~  163 (257)
T TIGR01458       121 SYQILNQAFRLLLDGAKPLLIAIGKGRYY-KRKDGLALDVGPFV  163 (257)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEeCCCCCC-cCCCCCCCCchHHH
Confidence            35788999999999999999999887554 23333444444333

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=83.98  E-value=4.2  Score=26.19  Aligned_cols=46  Identities=28%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-C-CeEEEEeCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-G-IHVAVASRS   73 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G-~~v~i~T~~   73 (103)
                      +.+|+++||-|.+++-.+        ...+.|.-..-+++++.. | ..++++||+
T Consensus        41 ~~ikavVlDKDNcit~P~--------~~~Iwp~~l~~ie~~~~vygek~i~v~SNs   88 (190)
T KOG2961|consen   41 KGIKAVVLDKDNCITAPY--------SLAIWPPLLPSIERCKAVYGEKDIAVFSNS   88 (190)
T ss_pred             cCceEEEEcCCCeeeCCc--------ccccCchhHHHHHHHHHHhCcccEEEEecC
Confidence            368999999999998632        233455566666777653 3 567778754

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=83.95  E-value=2.7  Score=25.06  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=24.4

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           51 PHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      +.+.+.++.++++|.+++.+|+.....+
T Consensus        61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~l   88 (120)
T cd05710          61 KETVAAAKFAKEKGATVIGLTDDEDSPL   88 (120)
T ss_pred             hHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence            6789999999999999999998876654

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=83.94  E-value=6.3  Score=27.31  Aligned_cols=68  Identities=24%  Similarity=0.305  Sum_probs=48.3

Q ss_pred             HHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           11 ALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        11 ~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++.+++....  +.++.=+.|.+++.          ....+...+-+..|++.|.+++++-|.. +.+ ...++++|+..
T Consensus        14 ~~pyi~~~~~--~~~VIk~gG~~~~~----------~~l~~~~~~di~~l~~~g~~~VlVHGgg-~~i-~~~~~~~g~~~   79 (284)
T CHL00202         14 ALPYIQKFRG--RIMVIKYGGAAMKN----------LILKADIIKDILFLSCIGLKIVVVHGGG-PEI-NFWLKQLNISP   79 (284)
T ss_pred             HHHHHHHHcC--CeEEEEEChHHhcC----------cchHHHHHHHHHHHHHCCCcEEEEeCCc-HHH-HHHHHHCCCCC
Confidence            3445555443  56777889988751          2234456777788899999999999888 453 88899999876


Q ss_pred             cc
Q 034147           91 MF   92 (103)
Q Consensus        91 ~~   92 (103)
                      .|
T Consensus        80 ~~   81 (284)
T CHL00202         80 KF   81 (284)
T ss_pred             Ee
Confidence            55

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=83.76  E-value=3.8  Score=31.84  Aligned_cols=54  Identities=11%  Similarity=0.046  Sum_probs=43.6

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++.|+..++|+++.+. +.+-|+|-+++.. |..+.+-++-...+-.+.|+|.+
T Consensus       199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~Y-A~~i~~liDP~~~lF~dRIisrd  252 (635)
T KOG0323|consen  199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDY-ALEIAKLIDPEGKYFGDRIISRD  252 (635)
T ss_pred             EEEeCccHHHHHHHHHhh-ceeEEEeccchHH-HHHHHHHhCCCCccccceEEEec
Confidence            456889999999999987 9999999999888 78888877655544347888765

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=83.16  E-value=7.3  Score=27.01  Aligned_cols=65  Identities=28%  Similarity=0.348  Sum_probs=48.3

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      +.++.=+.|....          ...+++.+.+-+..|+..|++.+|+=|+. +.+ ...+++++++..|.....+|
T Consensus         3 k~~VIK~GG~~~~----------~~~l~~~~~~di~lL~~~G~~~VvVHGgg-p~I-~~~l~~~gie~~f~~glRvT   67 (265)
T COG0548           3 KTIVIKLGGSAME----------DENLLEAFASDIALLKSVGIRPVVVHGGG-PQI-DEMLAKLGIEPEFVKGLRVT   67 (265)
T ss_pred             ceEEEEECceeec----------CchHHHHHHHHHHHHHHCCCcEEEEeCCc-hHH-HHHHHHcCCCCeeeCCEEcC
Confidence            4567777888775          22345667777888999999998888888 554 89999999998775544444

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=83.05  E-value=2.8  Score=26.67  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           51 PHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      +.+.++++.++++|.+++.+|+.+...+
T Consensus        86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~l  113 (179)
T TIGR03127        86 ESLVTVAKKAKEIGATVAAITTNPESTL  113 (179)
T ss_pred             HHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence            6788999999999999999998886664

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>PF01380 SIS: SIS domain SIS domain web page

Probab=82.93  E-value=4  Score=24.09  Aligned_cols=28  Identities=18%  Similarity=0.264  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           51 PHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      ....+.++.++++|.+++.+|++....+
T Consensus        67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l   94 (131)
T PF01380_consen   67 RELIELLRFAKERGAPVILITSNSESPL   94 (131)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred             hhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence            5689999999999999999998876654

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>PRK13762 tRNA-modifying enzyme; Provisional

Probab=82.17  E-value=3.2  Score=29.39  Aligned_cols=30  Identities=23%  Similarity=0.548  Sum_probs=26.1

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~   77 (103)
                      .++|.+.++++.++++|+.+++.||+....
T Consensus       142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~e  171 (322)
T PRK13762        142 TLYPYLPELIEEFHKRGFTTFLVTNGTRPD  171 (322)
T ss_pred             cchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence            356789999999999999999999997654

>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=82.13  E-value=4.9  Score=31.97  Aligned_cols=62  Identities=27%  Similarity=0.411  Sum_probs=38.4

Q ss_pred             hHHHHHHhhccC---CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC
Q 034147            8 KNEALEIIGQFE---NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS   73 (103)
Q Consensus         8 ~~~~~~~~~~~~---~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~   73 (103)
                      +.++.+.+....   -...++.+|+|  .|..  .+..-.-...-+|....++++++++|+++++.-.-
T Consensus       279 e~~v~~~i~~~~~~~IP~d~~~lD~~--~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P  343 (772)
T COG1501         279 EDEVLEFIDEMRERDIPLDVFVLDID--FWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINP  343 (772)
T ss_pred             HHHHHHHHhhcccccCcceEEEEeeh--hhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEecc
Confidence            344444444332   23577999999  3321  11111122346788899999999999999887743

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]

Probab=80.96  E-value=5.4  Score=32.27  Aligned_cols=46  Identities=17%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      -..+..||+++.++.+++.|+.+--+||.+-.. |+.+..+.|+-..
T Consensus       644 IkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~T-AkAIA~eCGILt~  689 (1034)
T KOG0204|consen  644 IKDPVRPGVPEAVQLCQRAGITVRMVTGDNINT-AKAIARECGILTP  689 (1034)
T ss_pred             ccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHH-HHHHHHHcccccC
Confidence            345678999999999999999999999999877 8888888887653

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=80.95  E-value=7.9  Score=21.83  Aligned_cols=64  Identities=22%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +++++.+..  ..+++++.|++-.=.                 ...++++++++.  +.+++++|+...... ....-+.
T Consensus        33 ~~~~~~~~~--~~~d~iiid~~~~~~-----------------~~~~~~~~i~~~~~~~~ii~~t~~~~~~~-~~~~~~~   92 (112)
T PF00072_consen   33 EEALELLKK--HPPDLIIIDLELPDG-----------------DGLELLEQIRQINPSIPIIVVTDEDDSDE-VQEALRA   92 (112)
T ss_dssp             HHHHHHHHH--STESEEEEESSSSSS-----------------BHHHHHHHHHHHTTTSEEEEEESSTSHHH-HHHHHHT
T ss_pred             HHHHHHhcc--cCceEEEEEeeeccc-----------------cccccccccccccccccEEEecCCCCHHH-HHHHHHC
Confidence            344555543  247888888532211                 235677777663  589999997776553 4444577


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |...|+
T Consensus        93 g~~~~l   98 (112)
T PF00072_consen   93 GADDYL   98 (112)
T ss_dssp             TESEEE
T ss_pred             CCCEEE
Confidence            776654

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45)

Probab=80.81  E-value=2.6  Score=23.73  Aligned_cols=33  Identities=24%  Similarity=0.131  Sum_probs=23.2

Q ss_pred             cHHHhhHHHHHHhhccCCCCceEEEeCCCCcccc
Q 034147            3 DLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPF   36 (103)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~   36 (103)
                      .++.++.-+.+.++... ..-.++++-|||.++.
T Consensus        22 sL~eL~~K~~~~l~l~~-~~~~lvL~eDGTeVdd   54 (78)
T cd01615          22 SLEELLSKACEKLKLPS-APVTLVLEEDGTEVDD   54 (78)
T ss_pred             CHHHHHHHHHHHcCCCC-CCeEEEEeCCCcEEcc
Confidence            35667777777777653 2334889999999973

These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.

>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]

Probab=80.29  E-value=4.6  Score=31.93  Aligned_cols=46  Identities=28%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDI   78 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i   78 (103)
                      ..+++++|.|||++..      ...      .....|+.|-.. +..+.|+|++.+..+
T Consensus       502 ~~rli~ldyd~t~~~~------~~~------~~~~~l~~L~~dp~n~v~i~s~~~r~~l  548 (732)
T KOG1050|consen  502 KKRLILLDYDLTLIPP------RSI------KAISILKDLCSDPKNIVYIVSGRGRSVL  548 (732)
T ss_pred             cceEEEecccccccCC------CCc------hHHHHHHHHhcCCCCeEEEEEccCchhh
Confidence            4789999999999962      111      166777777654 467889999997764

>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

Probab=80.16  E-value=3.5  Score=24.46  Aligned_cols=35  Identities=14%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           51 PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        51 ~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      +.+.+.++.++++|.+++.+|+..  .+ .....+.+.
T Consensus        57 ~e~i~~~~~a~~~g~~iI~IT~~~--~l-~~~~~~~~~   91 (119)
T cd05017          57 EETLSAVEQAKERGAKIVAITSGG--KL-LEMAREHGV   91 (119)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCc--hH-HHHHHHcCC
Confidence            578899999999999999999765  24 555565554

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1u7o_A	164	Magnesium Dependent Phosphatase 1 (Mdp-1) Length =		3e-06
2wm8_A	187	Crystal Structure Of Human Magnesium-Dependent Phos		4e-06

>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1) Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 20 NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
           LP+L VFDLDYTLWPF+ +   +                +   LYP    +L  L+  G
Sbjct: 3  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLG 62
Query: 65 IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
          + VA ASR+     A   L    +   F+
Sbjct: 63 VPVAAASRTSEIQGANQLLELFDLGKYFI 91

>pdb|2WM8|A Chain A, Crystal Structure Of Human Magnesium-Dependent Phosphatase 1 Of The Haloacid Dehalogenase Superfamily (Mgc5987) Length = 187

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 20  NLPRLVVFDLDYTLWPFYCECCYE---------------DEIPYLYPHAKGILEALKEKG 64
            LP+L VFDLDYTLWPF+ +   +                +   LYP    +L+ L+  G
Sbjct: 25  RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLG 84
Query: 65  IHVAVASRSPAPDIAKTFLHKLGIHSMFV 93
           +  A ASR+   + A   L    +   FV
Sbjct: 85  VPGAAASRTSEIEGANQLLELFDLFRYFV 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	3e-21
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	2e-07
1te2_A	226	Putative phosphatase; structural genomics, phospha	2e-06
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	2e-06
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	7e-06
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	8e-06
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	1e-05
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	1e-05
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	1e-05
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	1e-05
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	1e-05
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	2e-05
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	3e-05
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	4e-05
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	6e-05
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	1e-04
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	1e-04
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	1e-04
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	1e-04
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	2e-04
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	2e-04
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	2e-04
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	2e-04
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	2e-04
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	2e-04
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	3e-04
2zg6_A	220	Putative uncharacterized protein ST2620, probable	3e-04
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	4e-04
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	4e-04
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	4e-04
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	4e-04
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	5e-04
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	5e-04
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	6e-04

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187

 Score = 82.0 bits (202), Expect = 3e-21
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 14  IIGQFENLPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILE 58
                  LP+L VFDLDYTLWPF+ +   +                    LYP    +L+
Sbjct: 19  YFQSMARLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLK 78

Query: 59  ALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95
            L+  G+  A ASR+   + A   L    +   FV  
Sbjct: 79  RLQSLGVPGAAASRTSEIEGANQLLELFDLFRYFVHR 115

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
            E+  P L P  +  +   KE+G+ V +AS SP   + +  L    +   F
Sbjct: 89  VEETRP-LLPGVREAVALCKEQGLLVGLASASP-LHMLEKVLTMFDLRDSF 137

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L+ +K +G+   V + S    + +   H          MV
Sbjct: 110 RMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMV 157

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 41.7 bits (97), Expect = 7e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           Y++ I       K +L  LK  G  + +A+  P  +        LG+   F
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYF 258

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii} Length = 284

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 8  KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHV 67
                ++ +++     + FD    L          +    L P  +   + LK +G   
Sbjct: 4  IESFKSLLPKYK----CIFFDAFGVLK-------TYNG---LLPGIENTFDYLKAQGQDY 49

Query: 68 AV----ASRSPAPDIAKTFLHKLGIHS 90
           +    ASRSP   +A    HKLG+ S
Sbjct: 50 YIVTNDASRSPE-QLAD-SYHKLGLFS 74

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 16/48 (33%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  +L  +K +G+   V + S    +     H          MV
Sbjct: 109 RMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMV 156

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A Length = 258

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 12/70 (17%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          ++V FD+D TL         + ++P         +  LK+ G++VA+A+ R+P   + + 
Sbjct: 4  KIVFFDIDGTLLDE------QKQLP---LSTIEAVRRLKQSGVYVAIATGRAPF--MFEH 52

Query: 82 FLHKLGIHSM 91
             +LGI S 
Sbjct: 53 VRKQLGIDSF 62

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           ++P    +L  +K +G+ + +AS S         L +  +   F
Sbjct: 90  IFPDVLKVLNEVKSQGLEIGLASSSV-KADIFRALEENRLQGFF 132

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 37  YCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           Y     E  +  + P  + +L  L+ + I V +AS S     A T L  L +   F
Sbjct: 84  YVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSL---NAPTILAALELREFF 136

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
            + +I    P A  +LE L ++ +   +A+     D A   L  L +    + +V
Sbjct: 86  LQHQII-ALPGAVELLETLDKENLKWCIATSGG-IDTATINLKALKLDINKINIV 138

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A Length = 227

 Score = 39.8 bits (94), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKT 81
          RL   D+D  L         +  I      A   + + ++KG+ V++ S       +   
Sbjct: 6  RLAAIDVDGNLTDR------DRLIS---TKAIESIRSAEKKGLTVSLLSGNVIP--VVYA 54

Query: 82 FLHKLGIHSMFV 93
              LGI+    
Sbjct: 55 LKIFLGINGPVF 66

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E     P  K  +E L+EK +         ++SP   +
Sbjct: 6  QGYLIDLDGTIY-------LGKE---PIPAGKRFVERLQEKDLPFLFVTNNTTKSPE-TV 54

Query: 79 AKTFLHKLGIH 89
          A+   ++  IH
Sbjct: 55 AQRLANEFDIH 65

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233

 Score = 38.8 bits (91), Expect = 6e-05
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L P    +L  LK + I + +AS S     A   L +L I   F
Sbjct: 93  LLPGIGRLLCQLKNENIKIGLASSSR---NAPKILRRLAIIDDF 133

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           +YP    +L+ L+   I +A+AS S         L ++ +   F
Sbjct: 92  VYPGILQLLKDLRSNKIKIALASASK---NGPFLLERMNLTGYF 132

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A* Length = 271

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 20/88 (22%)

Query: 6  KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI 65
          K+ +    ++ + E    L + D+D T +        +D    L P +   LE LKEK  
Sbjct: 5  KIHHHHHHVLDKIE----LFILDMDGTFY-------LDDS---LLPGSLEFLETLKEKNK 50

Query: 66 HVAV----ASRSPAPDIAKTFLHKLGIH 89
                  +S      + K  L  +G+ 
Sbjct: 51 RFVFFTNNSSLGAQDYVRK--LRNMGVD 76

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14 Length = 250

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          + V+ D+D  L        +++      P A   L  + +KG+ + +     S++   D+
Sbjct: 4  KNVICDIDGVLM-------HDNV---AVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQ-DL 52

Query: 79 AKTFLHKLGIH 89
          A       G+ 
Sbjct: 53 AN-RFATAGVD 62

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A* Length = 306

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 21/93 (22%)

Query: 1  MGDLEKVKNEAL-EIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEA 59
          +   E+++  AL +++G+ +     V+FD D  LW         +      P A  +LE 
Sbjct: 3  LARCERLRGAALRDVLGRAQG----VLFDCDGVLW-------NGER---AVPGAPELLER 48

Query: 60 LKEKGIHVAV----ASRSPAPDIAKTFLHKLGI 88
          L   G         + R+      +    +LG 
Sbjct: 49 LARAGKAALFVSNNSRRARPELALR--FARLGF 79

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L   A  +L+ LKE  I +A+ S     +  ++ +H   +   F
Sbjct: 104 LNDGAIELLDTLKENNITMAIVSNKN-GERLRSEIHHKNLTHYF 146

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             P A  ++  L  +G  + + +R+    +A   L  +G+   F    
Sbjct: 71  PAPGAVELVRELAGRGYRLGILTRNARE-LAHVTLEAIGLADCFAEAD 117

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} Length = 268

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + D+D  +                 P     ++ LKE G  +      ++RS    +
Sbjct: 9  KGYIIDIDGVIG-------KSVT---PIPEGVEGVKKLKELGKKIIFVSNNSTRSRR-IL 57

Query: 79 AKTFLHKLGIH 89
           +  L   G+ 
Sbjct: 58 LER-LRSFGLE 67

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} Length = 274

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPAPDIAKTF 82
          L++ D+D TL            IP     AK  +   ++    V + + RS      +  
Sbjct: 7  LLILDIDGTLRD------EVYGIP---ESAKHAIRLCQKNHCSVVICTGRSMG--TIQDD 55

Query: 83 LHKLGIHSM 91
          +  LG+   
Sbjct: 56 VLSLGVDGY 64

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A Length = 264

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++                P  +  +E L+EKGI   +     +R+P   +
Sbjct: 6  KGYLIDLDGTIY-------KGKS---RIPAGERFIERLQEKGIPYMLVTNNTTRTPE-SV 54

Query: 79 AKTFLHKLGIH 89
           +  L    + 
Sbjct: 55 QE-MLRGFNVE 64

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 44  DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
             +      A   L AL+  G+  A+ S S    +    L   G+  +    +
Sbjct: 107 TGVT-AIEGAAETLRALRAAGVPFAIGSNSERGRLHLK-LRVAGLTELAGEHI 157

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDI 78
          +  + DLD T++          E       A   +  LK++G+        +SR+P   +
Sbjct: 7  KGYLIDLDGTMY-------NGTE---KIEEACEFVRTLKDRGVPYLFVTNNSSRTPK-QV 55

Query: 79 AKTFLHKLGIH 89
          A   L    I 
Sbjct: 56 AD-KLVSFDIP 65

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 37.0 bits (86), Expect = 3e-04
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 17  QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP 76
             ++   ++       L     E    D   +LY      LE LK  G  +A+ S +  P
Sbjct: 64  DPKDFLYILGIYPSERLVKELKEADIRDGEAFLYDDTLEFLEGLKSNGYKLALVSNAS-P 122

Query: 77  DIAKTFLHKLGIHSMF 92
            +    L K  +   F
Sbjct: 123 RVKTL-LEKFDLKKYF 137

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF 92
           L P A+ +L    E GI   + +     + A T L  LG+ S F
Sbjct: 86  LMPGAREVLAWADESGIQQFIYTH--KGNNAFTILKDLGVESYF 127

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A Length = 261

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPA 75
          + + FD+D TL  F         IP         LEA   KG+ + +A+ R  A
Sbjct: 3  KALFFDIDGTLVSFE-----THRIP---SSTIEALEAAHAKGLKIFIATGRPKA 48

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 48  YLYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMF 92
            +    K  L+ +KE+G+  AV            +  L + G+    
Sbjct: 99  LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFI 145

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} Length = 268

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 10/54 (18%), Positives = 26/54 (48%), Gaps = 9/54 (16%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS-RSPA 75
          ++++ D+D TL  F        ++      +   L+ + + GI + +A+ R+ +
Sbjct: 13 KVLLLDVDGTLLSFE-----THKVS---QSSIDALKKVHDSGIKIVIATGRAAS 58

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} Length = 263

 Score = 36.7 bits (86), Expect = 5e-04
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 16/69 (23%)

Query: 25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAV----ASRSPAPDIAK 80
          ++FD+D  L+         +      P  + ++E LKE+GI  A     ++++P     K
Sbjct: 4  IIFDMDGVLY-------RGNR---AIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREK 53

Query: 81 TFLHKLGIH 89
            L K+GI 
Sbjct: 54 --LLKMGID 60

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 49 LYPHAKGILEALKEKGIHVAVAS--RSPAPDIAKTFLHKLGIHSMF 92
          L  +AK  LE +K+ G   A+ S   +   ++ K  L   GI   F
Sbjct: 35 LRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Length = 250

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 49  LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV 96
           L P A+ ++  L++ GI  A+A+ S +              S+F  +V
Sbjct: 113 LMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIV 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.55
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.53
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.53
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.52
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.49
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.46
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.46
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.43
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.43
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.43
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.42
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.4
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.4
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.4
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.4
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.4
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.39
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.38
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.38
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.37
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.37
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	99.37
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.37
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.37
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.36
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.36
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.36
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.36
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.35
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.35
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.34
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.34
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.33
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.32
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.32
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.31
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.31
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.31
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.3
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	99.3
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.3
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	99.29
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.29
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.28
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	99.28
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.28
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.27
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	99.27
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.27
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.27
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	99.27
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.26
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.26
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.26
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.26
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.25
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.25
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.25
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.25
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.25
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.25
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.24
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.24
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.24
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.24
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.24
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.23
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	99.23
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.23
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	99.22
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.22
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.22
3dao_A	283	Putative phosphatse; structural genomics, joint ce	99.22
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	99.21
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	99.21
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.21
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	99.21
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	99.21
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.21
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	99.2
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.2
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.2
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.2
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.19
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	99.19
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.19
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.17
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	99.17
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	99.17
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.17
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	99.17
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.17
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.17
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.17
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.16
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.16
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	99.16
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	99.16
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.15
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	99.15
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.14
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	99.14
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.14
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.14
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.13
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.13
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.12
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.12
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	99.11
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.11
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.11
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.11
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.1
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.1
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.09
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	99.09
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.09
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.07
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.05
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.05
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	99.04
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.04
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	99.03
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	99.02
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.02
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.0
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.0
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.0
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	98.99
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	98.99
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	98.99
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	98.97
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	98.97
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	98.95
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.95
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	98.93
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.9
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	98.87
4gxt_A	385	A conserved functionally unknown protein; structur	98.83
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	98.78
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	98.75
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	98.71
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.63
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	98.62
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	98.61
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	98.01
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	98.53
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	98.45
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.44
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	98.39
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	98.16
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.84
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	97.63
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	97.22
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	97.03
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	96.96
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	96.93
2kln_A	130	Probable sulphate-transport transmembrane protein;	96.56
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	96.36
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	96.27
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	95.33
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	95.33
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	95.29
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	95.27
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	95.26
3llo_A	143	Prestin; STAS domain, cell shape, glycoprotein, me	94.3
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	94.11
3ny7_A	118	YCHM protein, sulfate transporter; fatty acid bios	94.06
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	94.06
4dgh_A	130	Sulfate permease family protein; STAS domain, anio	93.53
4dgf_A	135	Sulfate transporter sulfate transporter family PR;	91.23
2ka5_A	125	Putative anti-sigma factor antagonist TM_1081; ter	91.19
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	89.67
1th8_B	116	Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA,	89.51
1sbo_A	110	Putative anti-sigma factor antagonist TM1442; open	89.01
3t6o_A	121	Sulfate transporter/antisigma-factor antagonist S;	88.82
3zxn_A	123	RSBS, anti-sigma-factor antagonist (STAS) domain p	87.86
4hyl_A	117	Stage II sporulation protein; structural genomics,	87.74
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	87.34
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	86.34
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	85.71
3hzh_A	157	Chemotaxis response regulator (CHEY-3); phosphatas	85.35
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	85.19
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	84.8
2lpm_A	123	Two-component response regulator; transcription re	84.77
3jte_A	143	Response regulator receiver protein; structural ge	83.44
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	83.28
1h4x_A	117	SPOIIAA, anti-sigma F factor antagonist; cell diff	83.08
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	82.78
4fak_A	163	Ribosomal RNA large subunit methyltransferase H; a	82.27
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	81.73
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	80.5

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.55  E-value=1.3e-14  Score=92.40  Aligned_cols=74  Identities=38%  Similarity=0.686  Sum_probs=59.1

Q ss_pred             CCceEEEeCCCCcccccccc---------------cccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC-chhHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCEC---------------CYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP-APDIAKTFLH   84 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~---------------~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~-~~~i~~~~l~   84 (103)
                      .+++++||+|||||+.+...               ........++||+.++|++|+++|++++|+||++ ... ++..++
T Consensus        26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~-~~~~l~  104 (187)
T 2wm8_A           26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEG-ANQLLE  104 (187)
T ss_dssp             SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHH-HHHHHH
T ss_pred             ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHH-HHHHHH
Confidence            47899999999999643210               0112345689999999999999999999999998 577 699999


Q ss_pred             HcCCCCccccCee
Q 034147           85 KLGIHSMFVPMVR   97 (103)
Q Consensus        85 ~~~l~~~~~~~~i   97 (103)
                      .+++..+|  +.+
T Consensus       105 ~~gl~~~f--~~~  115 (187)
T 2wm8_A          105 LFDLFRYF--VHR  115 (187)
T ss_dssp             HTTCTTTE--EEE
T ss_pred             HcCcHhhc--cee
Confidence            99999888  554

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.53  E-value=5.6e-14  Score=89.65  Aligned_cols=77  Identities=23%  Similarity=0.187  Sum_probs=62.4

Q ss_pred             CceEEEeCCCCcccccc-----cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---hhHHHHHHHHcCCCCccc
Q 034147           22 PRLVVFDLDYTLWPFYC-----ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~-----~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---~~i~~~~l~~~~l~~~~~   93 (103)
                      +++++||+||||++...     ..........++||+.++|++|+++|++++|+||++.   .. +...++++|+..+| 
T Consensus         3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~-~~~~l~~~gl~~~f-   80 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV-IKRVLTNFGIIDYF-   80 (189)
T ss_dssp             CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHH-HHHHHHHTTCGGGE-
T ss_pred             ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHH-HHHHHHhcCchhhe-
Confidence            78999999999977221     0112223467999999999999999999999999886   66 58999999999999 


Q ss_pred             cCeeeecc
Q 034147           94 PMVRLSCC  101 (103)
Q Consensus        94 ~~~i~~~~  101 (103)
                       +.+++++
T Consensus        81 -d~i~~~~   87 (189)
T 3ib6_A           81 -DFIYASN   87 (189)
T ss_dssp             -EEEEECC
T ss_pred             -EEEEEcc
Confidence             8888765

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.53  E-value=8.9e-15  Score=87.96  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=58.1

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      +++++||+||||++          ...++|++.++|++|+++|++++++||++... ++..++++++..+|  +.++++
T Consensus         2 ~k~i~~D~DgtL~~----------~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~-~~~~l~~~~l~~~f--~~i~~~   67 (137)
T 2pr7_A            2 MRGLIVDYAGVLDG----------TDEDQRRWRNLLAAAKKNGVGTVILSNDPGGL-GAAPIRELETNGVV--DKVLLS   67 (137)
T ss_dssp             CCEEEECSTTTTSS----------CHHHHHHHHHHHHHHHHTTCEEEEEECSCCGG-GGHHHHHHHHTTSS--SEEEEH
T ss_pred             CcEEEEeccceecC----------CCccCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHCChHhhc--cEEEEe
Confidence            57899999999975          35688999999999999999999999999888 58889999998888  777765

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.52  E-value=1.8e-14  Score=92.59  Aligned_cols=53  Identities=26%  Similarity=0.288  Sum_probs=47.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++||+.++++.|+++|++++++||++... +...++.+++.++|  +.+++++.
T Consensus        83 ~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~-~~~~l~~~~l~~~f--d~~~~~~~  135 (216)
T 3kbb_A           83 LKENPGVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYF--DVMVFGDQ  135 (216)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGC--SEEECGGG
T ss_pred             cccCccHHHHHHHHHHcCCCcccccCCcHHH-HHHHHHhcCCCccc--cccccccc
Confidence            4688999999999999999999999999888 69999999999999  88887753

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.49  E-value=9e-14  Score=87.52  Aligned_cols=65  Identities=14%  Similarity=0.129  Sum_probs=51.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---------------hhHHHHHHHHc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHKL   86 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---------------~~i~~~~l~~~   86 (103)
                      +|+++||+||||++....+.......+++||+.++|++|+++|++++|+||++.               .. +...++++
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~~   79 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDK-MHRALAQM   79 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHH-HHHHHHHT
T ss_pred             CCEEEEcCCCccccCCCccCCCHHHceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHH-HHHHHHhC
Confidence            478999999999974322223334567899999999999999999999999986               45 47778888


Q ss_pred             C
Q 034147           87 G   87 (103)
Q Consensus        87 ~   87 (103)
                      |
T Consensus        80 g   80 (179)
T 3l8h_A           80 G   80 (179)
T ss_dssp             T
T ss_pred             C
Confidence            8

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.46  E-value=7.7e-14  Score=89.13  Aligned_cols=81  Identities=20%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             CCCceEEEeCCCCccccccccc--------------------------------------ccCCCcccChhHHHHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCECC--------------------------------------YEDEIPYLYPHAKGILEALK   61 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~--------------------------------------~~~~~~~~~~g~~~~l~~l~   61 (103)
                      ..+++++||+||||++....+.                                      .......++|++.++++.|+
T Consensus         4 ~~~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~   83 (205)
T 3m9l_A            4 SEIKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELA   83 (205)
T ss_dssp             GGCCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHH
T ss_pred             ccCCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence            3579999999999998543321                                      01223468899999999999


Q ss_pred             HCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           62 EKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        62 ~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ++|++++++|+++... ++..++.+++..+|..+.+++++
T Consensus        84 ~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f~~~~i~~~~  122 (205)
T 3m9l_A           84 GRGYRLGILTRNAREL-AHVTLEAIGLADCFAEADVLGRD  122 (205)
T ss_dssp             HTTCEEEEECSSCHHH-HHHHHHHTTCGGGSCGGGEECTT
T ss_pred             hcCCeEEEEeCCchHH-HHHHHHHcCchhhcCcceEEeCC
Confidence            9999999999999887 69999999998888544566654

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.46  E-value=1.8e-13  Score=91.90  Aligned_cols=81  Identities=16%  Similarity=0.063  Sum_probs=59.3

Q ss_pred             cCCCCceEEEeCCCCccccccccc-------cc---------CCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhH
Q 034147           18 FENLPRLVVFDLDYTLWPFYCECC-------YE---------DEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDI   78 (103)
Q Consensus        18 ~~~~~~~~~fD~DGTL~~~~~~~~-------~~---------~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i   78 (103)
                      ....+++++||+||||++...++.       ..         .....++||+.++|+.|+++|++++|+||++   ... 
T Consensus        55 ~~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~-  133 (258)
T 2i33_A           55 GTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDA-  133 (258)
T ss_dssp             CCSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHH-
T ss_pred             cCCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHH-
Confidence            345689999999999998531100       00         0125688999999999999999999999998   445 


Q ss_pred             HHHHHHHcCCC--CccccCeeeecc
Q 034147           79 AKTFLHKLGIH--SMFVPMVRLSCC  101 (103)
Q Consensus        79 ~~~~l~~~~l~--~~~~~~~i~~~~  101 (103)
                      +...++.+|+.  .++  +.+++++
T Consensus       134 ~~~~L~~~Gl~~v~~~--~vi~~~~  156 (258)
T 2i33_A          134 TIKNLERVGAPQATKE--HILLQDP  156 (258)
T ss_dssp             HHHHHHHHTCSSCSTT--TEEEECT
T ss_pred             HHHHHHHcCCCcCCCc--eEEECCC
Confidence            46778889997  555  5555543

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.43  E-value=2.8e-13  Score=87.33  Aligned_cols=75  Identities=20%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             CCCCceEEEeCCCCcccccccccc----cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcccc
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECCY----EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVP   94 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~~----~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~   94 (103)
                      ...+++++||+||||++.......    ......++||+.++|++|+++|++++|+||++... +....   +  .+|  
T Consensus         3 ~~~~kav~fDlDGTL~d~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~-~~~~~---~--~~~--   74 (196)
T 2oda_A            3 LPTFPALLFGLSGCLVDFGAQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELPEAL-STPLA---A--PVN--   74 (196)
T ss_dssp             --CCSCEEEETBTTTBCTTSTTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHH-HHHHH---T--TTT--
T ss_pred             CCcCCEEEEcCCCceEeccccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHH-HHHhc---C--ccC--
Confidence            345799999999999983210000    01234689999999999999999999999998766 33332   2  344  


Q ss_pred             Ceeeecc
Q 034147           95 MVRLSCC  101 (103)
Q Consensus        95 ~~i~~~~  101 (103)
                      +.+++++
T Consensus        75 d~v~~~~   81 (196)
T 2oda_A           75 DWMIAAP   81 (196)
T ss_dssp             TTCEECC
T ss_pred             CEEEECC
Confidence            5566554

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.43  E-value=5.8e-13  Score=86.36  Aligned_cols=68  Identities=13%  Similarity=-0.010  Sum_probs=53.9

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---------------chhHHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---------------APDIAKTFLH   84 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---------------~~~i~~~~l~   84 (103)
                      +.+++++||+||||++...+ ........++||+.++|++|+++|++++|+||++               ... +...++
T Consensus        23 ~~~k~v~~D~DGTL~~~~~~-~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~-~~~~l~  100 (211)
T 2gmw_A           23 KSVPAIFLDRDGTINVDHGY-VHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEW-MDWSLA  100 (211)
T ss_dssp             -CBCEEEECSBTTTBCCCSS-CCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHH-HHHHHH
T ss_pred             hcCCEEEEcCCCCeECCCCc-ccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHH-HHHHHH
Confidence            34789999999999974311 1122345789999999999999999999999999               356 588899


Q ss_pred             HcCCC
Q 034147           85 KLGIH   89 (103)
Q Consensus        85 ~~~l~   89 (103)
                      .+|+.
T Consensus       101 ~~gl~  105 (211)
T 2gmw_A          101 DRDVD  105 (211)
T ss_dssp             HTTCC
T ss_pred             HcCCc
Confidence            99986

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.43  E-value=4.2e-13  Score=89.12  Aligned_cols=66  Identities=17%  Similarity=0.046  Sum_probs=52.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCCCccccCee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      .+|+++||+||||++.          ..+.|++.++|++++++|++++++||   ++... ....++.+|+....  +.+
T Consensus         7 ~~kli~~DlDGTLl~~----------~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~-~~~~l~~lg~~~~~--~~i   73 (268)
T 3qgm_A            7 DKKGYIIDIDGVIGKS----------VTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRI-LLERLRSFGLEVGE--DEI   73 (268)
T ss_dssp             CCSEEEEECBTTTEET----------TEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHH-HHHHHHHTTCCCCG--GGE
T ss_pred             cCCEEEEcCcCcEECC----------CEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHH-HHHHHHHCCCCCCH--HHe
Confidence            4899999999999973          23668999999999999999999999   55566 36778888886443  455


Q ss_pred             ee
Q 034147           98 LS   99 (103)
Q Consensus        98 ~~   99 (103)
                      ++
T Consensus        74 i~   75 (268)
T 3qgm_A           74 LV   75 (268)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.42  E-value=2.7e-13  Score=86.03  Aligned_cols=72  Identities=22%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             CCCceEEEeCCCCcccccccccccCCC-cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEI-PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~-~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||++....+...... ..+.+...++|++|+++|++++++||++... +...++++++..+|
T Consensus         6 ~~ik~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~-~~~~~~~lgl~~~~   78 (180)
T 1k1e_A            6 ENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFF   78 (180)
T ss_dssp             GGCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEE
T ss_pred             hCCeEEEEeCCCCcCCCCeeeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHH-HHHHHHHcCCceee
Confidence            357999999999999853222211111 1345678899999999999999999999888 69999999998766

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.40  E-value=4.7e-13  Score=86.16  Aligned_cols=53  Identities=17%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|++.++++.|++.|++++++|+++... +...++++++..+|  +.+++++.
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  142 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDT-ATINLKALKLDINK--INIVTRDD  142 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHTTTCCTTS--SCEECGGG
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhh-HHHHHHhcchhhhh--heeecccc
Confidence            5788999999999999999999999999887 59999999999988  77877653

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.40  E-value=1.5e-12  Score=83.79  Aligned_cols=54  Identities=15%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++|++.++++.|+++|++++++|+++... +...++.+++..+|  +.+++++.
T Consensus        94 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  147 (230)
T 3um9_A           94 SLTPFADVPQALQQLRAAGLKTAILSNGSRHS-IRQVVGNSGLTNSF--DHLISVDE  147 (230)
T ss_dssp             SCCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTCGGGC--SEEEEGGG
T ss_pred             cCCCCCCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHHCCChhhc--ceeEehhh
Confidence            45678999999999999999999999999887 58999999999988  88887753

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.40  E-value=3.6e-13  Score=87.28  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ....++|++.++++.|+++|++++++|++.... ++..++++++..+|  +.+++++.
T Consensus       101 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  155 (237)
T 4ex6_A          101 GPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKA-ARAIAELTGLDTRL--TVIAGDDS  155 (237)
T ss_dssp             GGGGBCTTHHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTGGGTC--SEEECTTT
T ss_pred             cCCccCCCHHHHHHHHHhCCCcEEEEcCCChHH-HHHHHHHcCchhhe--eeEEeCCC
Confidence            345689999999999999999999999999887 59999999999999  88887764

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.40  E-value=7e-13  Score=83.98  Aligned_cols=52  Identities=23%  Similarity=0.365  Sum_probs=46.9

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .++|++.++++.|+++|++++++|+++... ++..++++++..+|  +.+++++.
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  140 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSVKAD-IFRALEENRLQGFF--DIVLSGEE  140 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCcHHH-HHHHHHHcCcHhhe--eeEeeccc
Confidence            688999999999999999999999999887 59999999999999  88887653

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.40  E-value=3e-13  Score=87.05  Aligned_cols=51  Identities=20%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+.|++ |++++++||++... ++..++++|+..+|  +.+++++
T Consensus        83 ~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~-~~~~l~~~gl~~~f--~~i~~~~  133 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSS-SYPLYITTTKDTST-AQDMAKNLEIHHFF--DGIYGSS  133 (210)
T ss_dssp             CEECTTHHHHHHHHHT-TSCEEEEEEEEHHH-HHHHHHHTTCGGGC--SEEEEEC
T ss_pred             CCCCCCHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHHhcCchhhe--eeeecCC
Confidence            4678999999999999 99999999999777 58899999999999  8888764

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.39  E-value=5.4e-13  Score=85.77  Aligned_cols=53  Identities=23%  Similarity=0.397  Sum_probs=47.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|++.++++.|+++|++++++|++.... ++..++.+++..+|  +.+++++.
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  137 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVF-SKQILEHFKLAFYF--DAIVGSSL  137 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHH-HHHHHHHTTCGGGC--SEEEEECT
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCHhhe--eeeeccCC
Confidence            4688999999999999999999999999887 59999999999999  88887654

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.38  E-value=5.8e-13  Score=82.73  Aligned_cols=71  Identities=23%  Similarity=0.210  Sum_probs=55.4

Q ss_pred             CCceEEEeCCCCcccccccccccCC-CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDE-IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++++||+||||++.......... ...+.|+..++|++|+++|++++++||++... ++..++++++..+|
T Consensus         8 ~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~   79 (162)
T 2p9j_A            8 KLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAP-LITRLKELGVEEIY   79 (162)
T ss_dssp             HCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHH-HHHHHHHTTCCEEE
T ss_pred             ceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHH-HHHHHHHcCCHhhc
Confidence            3789999999999975322211111 12345778999999999999999999999888 69999999987766

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.38  E-value=6.6e-13  Score=88.17  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCCCccccCee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      ++|+++||+||||++.          ..+.|++.++|++++++|++++++||   ++... ....++.+|+....  +.+
T Consensus         5 ~~kli~~DlDGTLl~~----------~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~-~~~~l~~lg~~~~~--~~i   71 (266)
T 3pdw_A            5 TYKGYLIDLDGTMYNG----------TEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQ-VADKLVSFDIPATE--EQV   71 (266)
T ss_dssp             CCSEEEEECSSSTTCH----------HHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHH-HHHHHHHTTCCCCG--GGE
T ss_pred             cCCEEEEeCcCceEeC----------CEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCCCH--HHc
Confidence            5899999999999972          23568999999999999999999998   55555 36778888886433  444


Q ss_pred             ee
Q 034147           98 LS   99 (103)
Q Consensus        98 ~~   99 (103)
                      ++
T Consensus        72 i~   73 (266)
T 3pdw_A           72 FT   73 (266)
T ss_dssp             EE
T ss_pred             cC
Confidence            43

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.37  E-value=2.4e-12  Score=83.56  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=42.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++|++.++++.|+++|++++++||++... +...+++ ++..+|..+.+++++
T Consensus       106 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~~~~~~~~  159 (247)
T 3dv9_A          106 KAERMPGALEVLTKIKSEGLTPMVVTGSGQTS-LLDRLNH-NFPGIFQANLMVTAF  159 (247)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECSCC----CHHHHHH-HSTTTCCGGGEECGG
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEcCCchHH-HHHHHHh-hHHHhcCCCeEEecc
Confidence            35688999999999999999999999999877 4788888 988888444566554

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.37  E-value=1.4e-12  Score=84.96  Aligned_cols=52  Identities=27%  Similarity=0.238  Sum_probs=46.1

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .++||+.+++++|+++|++++++||++... +...++++|+..+|  +.+++++.
T Consensus       105 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  156 (240)
T 2no4_A          105 SAYPDAAETLEKLKSAGYIVAILSNGNDEM-LQAALKASKLDRVL--DSCLSADD  156 (240)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCcHHHc--CEEEEccc
Confidence            467999999999999999999999999877 58999999999988  88887653

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=99.37  E-value=1.9e-12  Score=80.07  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=49.4

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~~~l~~   90 (103)
                      +++++||+||||++.     .......+.|++.++|++++++|+.++++||++   ... +...++.+++..
T Consensus         3 ~k~i~~DlDGTL~~~-----~~~~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~-~~~~l~~~gi~~   68 (142)
T 2obb_A            3 AMTIAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDE-AIEWCRARGLEF   68 (142)
T ss_dssp             CCEEEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHH-HHHHHHTTTCCC
T ss_pred             CeEEEEECcCCCCCC-----CCccccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHH-HHHHHHHcCCCe
Confidence            678999999999983     222233456899999999999999999999998   445 466677777754

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.37  E-value=1.3e-12  Score=84.61  Aligned_cols=54  Identities=30%  Similarity=0.313  Sum_probs=47.4

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++||+.++|+.|+++|++++++||++... ++..++++++..+|  +.+++++
T Consensus        80 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~f--~~i~~~~  133 (222)
T 2nyv_A           80 VYTKPYPEIPYTLEALKSKGFKLAVVSNKLEEL-SKKILDILNLSGYF--DLIVGGD  133 (222)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGC--SEEECTT
T ss_pred             ccCccCCCHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCHHHh--eEEEecC
Confidence            345689999999999999999999999999777 58899999998888  7887764

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.36  E-value=1.4e-12  Score=84.29  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=45.6

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++|++.++++.|+++|++++++||++... +...++++++..+|  +.+++++
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  145 (232)
T 1zrn_A           95 APFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGF--DHLLSVD  145 (232)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEESG
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHhcChHhhh--heEEEec
Confidence            577999999999999999999999999877 58899999999888  8887765

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.36  E-value=2.4e-12  Score=85.86  Aligned_cols=52  Identities=19%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             cccChhHHHHHHHHHHCCC--eEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGI--HVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~--~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++|+.|+++|+  +++++||++... +...++.+++..+|  +.+++++
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~-~~~~l~~~gl~~~f--d~v~~~~  194 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNH-AIRCLRLLGIADLF--DGLTYCD  194 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHH-HHHHHHHHTCTTSC--SEEECCC
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHH-HHHHHHhCCccccc--ceEEEec
Confidence            5689999999999999999  999999999887 59999999999999  8877654

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.36  E-value=2.4e-12  Score=83.15  Aligned_cols=53  Identities=21%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++|++.++++.|+++|++++++||++... +...++.+++..+|  +.+++++
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f--~~i~~~~  153 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGER-LRSEIHHKNLTHYF--DSIIGSG  153 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGC--SEEEEET
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHCCchhhe--eeEEccc
Confidence            45688999999999999999999999999887 59999999999988  8887765

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.36  E-value=1.9e-12  Score=85.21  Aligned_cols=51  Identities=25%  Similarity=0.337  Sum_probs=43.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++||+.++++.|+++|++++++|++..   +...++++|+..+|  +.+++++.
T Consensus        94 ~~~~pg~~~ll~~L~~~g~~i~i~t~~~~---~~~~l~~~gl~~~f--d~i~~~~~  144 (243)
T 4g9b_A           94 NAVLPGIRSLLADLRAQQISVGLASVSLN---APTILAALELREFF--TFCADASQ  144 (243)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCCTT---HHHHHHHTTCGGGC--SEECCGGG
T ss_pred             ccccccHHHHHHhhhcccccceecccccc---hhhhhhhhhhcccc--cccccccc
Confidence            35789999999999999999999998764   36678999999999  88888763

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.35  E-value=1.2e-12  Score=85.12  Aligned_cols=53  Identities=28%  Similarity=0.347  Sum_probs=47.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|++.++++.|+++|++++++|+++... ++..++.+++..+|  +.+++++.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  161 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVF-AETILRYFDIDRYF--KYIAGSNL  161 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCGGGC--SEEEEECT
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHH-HHHHHHHcCcHhhE--EEEEeccc
Confidence            4689999999999999999999999998887 59999999999999  88887764

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.35  E-value=2.4e-12  Score=84.98  Aligned_cols=52  Identities=23%  Similarity=0.313  Sum_probs=43.5

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++||+.++++.|+++|++++++|++.  . +...++++|+.++|  +.|++++.
T Consensus       114 ~~~~~p~~~~ll~~Lk~~g~~i~i~~~~~--~-~~~~L~~~gl~~~F--d~i~~~~~  165 (250)
T 4gib_A          114 SNDILPGIESLLIDVKSNNIKIGLSSASK--N-AINVLNHLGISDKF--DFIADAGK  165 (250)
T ss_dssp             GGGSCTTHHHHHHHHHHTTCEEEECCSCT--T-HHHHHHHHTCGGGC--SEECCGGG
T ss_pred             ccccchhHHHHHHHHHhcccccccccccc--h-hhhHhhhccccccc--ceeecccc
Confidence            34578999999999999999999877665  3 36679999999999  88888763

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.34  E-value=3.6e-12  Score=83.68  Aligned_cols=52  Identities=35%  Similarity=0.544  Sum_probs=45.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+.|+++|++++++|+++... ++..++++++..+|  +.+++++
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~gl~~~f--~~~~~~~  164 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLF--SEMLGGQ  164 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGC--SEEECTT
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHH-HHHHHHHcCchheE--EEEEecc
Confidence            4577999999999999999999999999777 69999999998888  7777765

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.34  E-value=2.7e-12  Score=81.31  Aligned_cols=74  Identities=16%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             CCCceEEEeCCCCcccccc--cccccCCCcccChhHHHHHHHHHHCCCeEEEEeCC---------------CchhHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYC--ECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRS---------------PAPDIAKTF   82 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~--~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~---------------~~~~i~~~~   82 (103)
                      +.+++++||+||||++..+  ..........++||+.++|++|+++|++++|+||+               .... +...
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~   90 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNL-MMQI   90 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHH-HHHH
T ss_pred             CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHH-HHHH
Confidence            4589999999999997421  11222335678999999999999999999999998               4455 5888


Q ss_pred             HHHcCCCCccccCeee
Q 034147           83 LHKLGIHSMFVPMVRL   98 (103)
Q Consensus        83 l~~~~l~~~~~~~~i~   98 (103)
                      ++.+++.  |  +.++
T Consensus        91 l~~~gl~--f--d~v~  102 (176)
T 2fpr_A           91 FTSQGVQ--F--DEVL  102 (176)
T ss_dssp             HHHTTCC--E--EEEE
T ss_pred             HHHcCCC--e--eEEE
Confidence            9999986  5  6665

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.33  E-value=2.1e-12  Score=85.85  Aligned_cols=66  Identities=18%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe---CCCchhHHHHHHHHcCCCCccccCee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T---~~~~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      ++|+++||+||||++.          ....|++.++|++++++|++++++|   +++... ....++.+|+....  +.+
T Consensus         4 ~~kli~~DlDGTLl~~----------~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~-~~~~l~~lg~~~~~--~~i   70 (264)
T 3epr_A            4 AYKGYLIDLDGTIYKG----------KSRIPAGERFIERLQEKGIPYMLVTNNTTRTPES-VQEMLRGFNVETPL--ETI   70 (264)
T ss_dssp             CCCEEEECCBTTTEET----------TEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHH-HHHHHHTTTCCCCG--GGE
T ss_pred             CCCEEEEeCCCceEeC----------CEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHH-HHHHHHHCCCCCCh--hhe
Confidence            4899999999999983          2334899999999999999999999   555566 47778888876433  445


Q ss_pred             ee
Q 034147           98 LS   99 (103)
Q Consensus        98 ~~   99 (103)
                      ++
T Consensus        71 i~   72 (264)
T 3epr_A           71 YT   72 (264)
T ss_dssp             EE
T ss_pred             ec
Confidence            44

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.32  E-value=1e-12  Score=84.09  Aligned_cols=49  Identities=24%  Similarity=0.237  Sum_probs=43.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      ..++|++.++++.|+++|++++++||++... ++..++.+++..+|  +.++
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~-~~~~l~~~gl~~~f--~~~~  122 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLA-TNHYRDLLHLDAAF--SNTL  122 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHH-HHHHHHHHTCSEEE--EEEE
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhH-HHHHHHHcCcchhc--ccee
Confidence            5689999999999999999999999999887 59999999998888  5554

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.32  E-value=3.9e-12  Score=79.07  Aligned_cols=72  Identities=14%  Similarity=0.015  Sum_probs=52.6

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcc-cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~-~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||++....+........ .......++++|+++|++++++||++... ++..++++++..+|
T Consensus         2 ~~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~~   74 (164)
T 3e8m_A            2 KEIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEKTEI-VRRRAEKLKVDYLF   74 (164)
T ss_dssp             CCCCEEEECSTTTTSSSEEEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSCCHH-HHHHHHHTTCSEEE
T ss_pred             CcceEEEEcCCCceEcCcEEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcCCCEee
Confidence            35789999999999985432222221111 11122347999999999999999999888 69999999998776

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.31  E-value=1.2e-12  Score=86.06  Aligned_cols=54  Identities=19%  Similarity=0.089  Sum_probs=47.0

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCe-eeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV-RLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~-i~~~~  101 (103)
                      ....++|++.++++.|+++|++++++|+++... ++..++.+++..+|  +. +++++
T Consensus       107 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~i~~~~  161 (259)
T 4eek_A          107 TGVTAIEGAAETLRALRAAGVPFAIGSNSERGR-LHLKLRVAGLTELA--GEHIYDPS  161 (259)
T ss_dssp             TTCEECTTHHHHHHHHHHHTCCEEEECSSCHHH-HHHHHHHTTCHHHH--CSCEECGG
T ss_pred             ccCCcCccHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHhcChHhhc--cceEEeHh
Confidence            345789999999999999999999999999877 59999999998888  77 77664

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.31  E-value=4.2e-12  Score=82.29  Aligned_cols=44  Identities=11%  Similarity=0.151  Sum_probs=40.0

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .++||+.++|++|+++|++++|+||++... ++..++++|+..++
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~-~~~~~~~~g~~~~~  135 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFV-TAPIARAFGVQHLI  135 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCCEEE
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEE
Confidence            569999999999999999999999999887 69999999997655

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.31  E-value=4.5e-12  Score=81.74  Aligned_cols=53  Identities=19%  Similarity=0.282  Sum_probs=46.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|++.++++.|+++|++++++||++... +...++++++..+|  +.+++++.
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  150 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQM-LEIAVKSAGMSGLF--DHVLSVDA  150 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHH-HHHHHHTTTCTTTC--SEEEEGGG
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHHCCcHhhc--CEEEEecc
Confidence            4578999999999999999999999999877 58899999999999  88887653

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.30  E-value=4.5e-12  Score=82.63  Aligned_cols=54  Identities=19%  Similarity=0.183  Sum_probs=44.9

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++|++.++++.|+++|++++++|+++... +...++. ++..+|..+.+++++
T Consensus       107 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~-~l~~~f~~d~i~~~~  160 (243)
T 3qxg_A          107 EAERMPGAWELLQKVKSEGLTPMVVTGSGQLS-LLERLEH-NFPGMFHKELMVTAF  160 (243)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECCCCCHH-HHTTHHH-HSTTTCCGGGEECTT
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEeCCcHHH-HHHHHHH-hHHHhcCcceEEeHH
Confidence            35688999999999999999999999999877 5888888 988888544566654

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=99.30  E-value=5.8e-12  Score=84.63  Aligned_cols=62  Identities=32%  Similarity=0.369  Sum_probs=52.1

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ..+|+++||+||||++.         ...+.+.+.++|++++++|++++++||++... +...++.+++..+
T Consensus        19 ~~~kli~~DlDGTLl~~---------~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~~~   80 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSP---------DHFLTPYAKETLKLLTARGINFVFATGRHYID-VGQIRDNLGIRSY   80 (285)
T ss_dssp             --CCEEEEECCCCCSCT---------TSCCCHHHHHHHHHHHTTTCEEEEECSSCGGG-GHHHHHHHCSCCE
T ss_pred             CcceEEEEeCcCCCCCC---------CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHhcCCCcc
Confidence            35899999999999973         12356889999999999999999999999988 4889999998643

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.30  E-value=6e-12  Score=80.49  Aligned_cols=71  Identities=20%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++++||+||||+++...+.........+ ..-..+|++|+++|++++|+||++... ++..++++|+.++|
T Consensus        18 ~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgl~~~f   89 (189)
T 3mn1_A           18 AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRKTAI-VERRAKSLGIEHLF   89 (189)
T ss_dssp             TCCEEEECSTTTTSCSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCSEEE
T ss_pred             hCCEEEEcCCCCcCCccEeeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcChHH-HHHHHHHcCCHHHh
Confidence            578999999999999643322222211111 111238999999999999999999888 69999999998877

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=99.29  E-value=1.4e-11  Score=82.80  Aligned_cols=59  Identities=22%  Similarity=0.434  Sum_probs=51.0

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||++.      .   ..+.+...++|++++++|++++++|||+... +...++.+++..
T Consensus         5 ~kli~~DlDGTLl~~------~---~~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~-~~~~~~~l~l~~   63 (282)
T 1rkq_A            5 IKLIAIDMDGTLLLP------D---HTISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQ   63 (282)
T ss_dssp             CCEEEECCCCCCSCT------T---SCCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCS
T ss_pred             ceEEEEeCCCCCCCC------C---CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCCCC
Confidence            789999999999973      1   2356889999999999999999999999888 588899998754

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.29  E-value=1.7e-12  Score=84.61  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..++||+.++|+.|+++| +++|+||++... +...++++|+.++|
T Consensus        95 ~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~-~~~~l~~~gl~~~f  138 (231)
T 2p11_A           95 SRVYPGALNALRHLGARG-PTVILSDGDVVF-QPRKIARSGLWDEV  138 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTS-CEEEEEECCSSH-HHHHHHHTTHHHHT
T ss_pred             CCcCccHHHHHHHHHhCC-CEEEEeCCCHHH-HHHHHHHcCcHHhc
Confidence            468899999999999999 999999999888 59999999998887

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=99.28  E-value=1.2e-11  Score=82.41  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++|+++||+||||++.         ...+.+...++|++++++|++++++||++... +...++.+++..
T Consensus         4 ~~kli~~DlDGTLl~~---------~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   63 (279)
T 3mpo_A            4 TIKLIAIDIDGTLLNE---------KNELAQATIDAVQAAKAQGIKVVLCTGRPLTG-VQPYLDAMDIDG   63 (279)
T ss_dssp             -CCEEEECC--------------------CHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCCS
T ss_pred             ceEEEEEcCcCCCCCC---------CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCCC
Confidence            4799999999999984         12466889999999999999999999999888 588999998764

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.28  E-value=4.1e-12  Score=82.09  Aligned_cols=50  Identities=28%  Similarity=0.449  Sum_probs=42.4

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|++|+++|++++++||++. . +...++++|+..+|  +.+++++
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~-~~~~l~~~gl~~~f--~~~~~~~  144 (220)
T 2zg6_A           95 FLYDDTLEFLEGLKSNGYKLALVSNASP-R-VKTLLEKFDLKKYF--DALALSY  144 (220)
T ss_dssp             EECTTHHHHHHHHHTTTCEEEECCSCHH-H-HHHHHHHHTCGGGC--SEEC---
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEeCCcH-H-HHHHHHhcCcHhHe--eEEEecc
Confidence            5789999999999999999999999975 5 48899999999999  8887765

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.27  E-value=7.8e-12  Score=81.59  Aligned_cols=72  Identities=18%  Similarity=0.118  Sum_probs=53.1

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||+++...+.........+ ..-..+|++|+++|++++|+||++... ++..++++|+..+|
T Consensus        47 ~~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~d~~~L~~L~~~G~~l~I~T~~~~~~-~~~~l~~lgi~~~f  119 (211)
T 3ij5_A           47 ANIRLLICDVDGVMSDGLIYMGNQGEELKAFNVRDGYGIRCLITSDIDVAIITGRRAKL-LEDRANTLGITHLY  119 (211)
T ss_dssp             TTCSEEEECCTTTTSSSEEEEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHHTCCEEE
T ss_pred             hCCCEEEEeCCCCEECCHHHHhhhhHHHHHhccchHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCchhh
Confidence            3578999999999999653332222211111 111228999999999999999999888 69999999998776

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=99.27  E-value=1.8e-11  Score=81.66  Aligned_cols=59  Identities=25%  Similarity=0.325  Sum_probs=51.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ++|+++||+||||++.         ...+.+...++|++++++|++++++||++... +...++.+++.
T Consensus         4 ~~kli~fDlDGTLl~~---------~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~   62 (279)
T 4dw8_A            4 KYKLIVLDLDGTLTNS---------KKEISSRNRETLIRIQEQGIRLVLASGRPTYG-IVPLANELRMN   62 (279)
T ss_dssp             CCCEEEECCCCCCSCT---------TSCCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTGG
T ss_pred             cceEEEEeCCCCCCCC---------CCccCHHHHHHHHHHHHCCCEEEEEcCCChHH-HHHHHHHhCCC
Confidence            4799999999999974         12456889999999999999999999999888 58889998873

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.27  E-value=1e-11  Score=78.62  Aligned_cols=71  Identities=18%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||++....+.........+ ..-..+|++|+++|++++|+||++... ++..++++|+. +|
T Consensus        10 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~lgi~-~~   81 (176)
T 3mmz_A           10 EDIDAVVLDFDGTQTDDRVLIDSDGREFVSVHRGDGLGIAALRKSGLTMLILSTEQNPV-VAARARKLKIP-VL   81 (176)
T ss_dssp             GGCSEEEECCTTTTSCSCCEECTTCCEEEEEEHHHHHHHHHHHHTTCEEEEEESSCCHH-HHHHHHHHTCC-EE
T ss_pred             hcCCEEEEeCCCCcCcCCEeecCCccHhHhcccccHHHHHHHHHCCCeEEEEECcChHH-HHHHHHHcCCe-eE
Confidence            3578999999999998433222111111111 111227999999999999999999888 69999999987 44

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=1.2e-11  Score=79.22  Aligned_cols=51  Identities=27%  Similarity=0.330  Sum_probs=44.8

Q ss_pred             cccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           47 PYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ..++|++.++++.|+++| ++++++|+++... +...++.+++.++|  +.++++
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~-~~~~l~~~~~~~~f--~~~~~~  155 (234)
T 3ddh_A          104 IELLPGVKETLKTLKETGKYKLVVATKGDLLD-QENKLERSGLSPYF--DHIEVM  155 (234)
T ss_dssp             CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHH-HHHHHHHHTCGGGC--SEEEEE
T ss_pred             CCcCccHHHHHHHHHhCCCeEEEEEeCCchHH-HHHHHHHhCcHhhh--heeeec
Confidence            467899999999999999 9999999998777 58899999999888  777654

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=99.27  E-value=1.6e-11  Score=80.42  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=50.6

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||++.         ...+.+...+++++++++|++++++||++... +...++.+++..
T Consensus         3 ~kli~~DlDGTLl~~---------~~~i~~~~~~al~~l~~~G~~v~i~TGR~~~~-~~~~~~~l~~~~   61 (231)
T 1wr8_A            3 IKAISIDIDGTITYP---------NRMIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTSG   61 (231)
T ss_dssp             CCEEEEESTTTTBCT---------TSCBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCCS
T ss_pred             eeEEEEECCCCCCCC---------CCcCCHHHHHHHHHHHHCCCEEEEEcCCChhH-HHHHHHHcCCCC
Confidence            689999999999973         12366889999999999999999999999888 588888888754

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.26  E-value=6.6e-12  Score=79.58  Aligned_cols=50  Identities=6%  Similarity=0.099  Sum_probs=44.0

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++|++.++++.|+++| +++++||++... +...++++++..+|  +.+++++
T Consensus        86 ~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~-~~~~l~~~~~~~~f--~~~~~~~  135 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRY-RMYSLNNEGRDL-NEYRIRTFGLGEFL--LAFFTSS  135 (200)
T ss_dssp             CBCHHHHHHHHHHTTTS-EEEEEECCCHHH-HHHHHHHHTGGGTC--SCEEEHH
T ss_pred             ccCccHHHHHHHHHHcC-CEEEEeCCcHHH-HHHHHHhCCHHHhc--ceEEeec
Confidence            47899999999999999 999999999877 58899999998888  7777654

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.26  E-value=3.4e-12  Score=87.76  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++||+.+++++|+++|++++|+||+.... ++..++++|+..+|
T Consensus       177 ~~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~-~~~~l~~lgl~~~f  222 (317)
T 4eze_A          177 RMTLSPGLLTILPVIKAKGFKTAIISGGLDIF-TQRLKARYQLDYAF  222 (317)
T ss_dssp             TCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEE
T ss_pred             CCEECcCHHHHHHHHHhCCCEEEEEeCccHHH-HHHHHHHcCCCeEE
Confidence            35689999999999999999999999999887 69999999998887

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.26  E-value=1.6e-11  Score=87.09  Aligned_cols=77  Identities=23%  Similarity=0.325  Sum_probs=56.0

Q ss_pred             CCCceEEEeCCCCccccccc--cccc-CCCcccChhHHHHHHHHHHCCCeEEEEeCCC------------chhHHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCE--CCYE-DEIPYLYPHAKGILEALKEKGIHVAVASRSP------------APDIAKTFLH   84 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~--~~~~-~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~------------~~~i~~~~l~   84 (103)
                      ..+++++||+||||++....  +... .....++||+.++|++|+++|++++|+||++            ... +...++
T Consensus        56 ~~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~-~~~~l~  134 (416)
T 3zvl_A           56 PQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGK-VEAVLE  134 (416)
T ss_dssp             CCSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHH-HHHHHH
T ss_pred             CCCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHH-HHHHHH
Confidence            35799999999999974321  1111 1222478999999999999999999999966            222 367788


Q ss_pred             HcCCCCccccCeeeecc
Q 034147           85 KLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        85 ~~~l~~~~~~~~i~~~~  101 (103)
                      ++|+.  |  +.+++++
T Consensus       135 ~lgl~--f--d~i~~~~  147 (416)
T 3zvl_A          135 KLGVP--F--QVLVATH  147 (416)
T ss_dssp             HHTSC--C--EEEEECS
T ss_pred             HcCCC--E--EEEEECC
Confidence            99984  6  6777664

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.26  E-value=4.9e-12  Score=80.44  Aligned_cols=42  Identities=24%  Similarity=0.310  Sum_probs=37.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ..++|++.++++.|+++|++++++|+++... ++..++++++.
T Consensus        81 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~  122 (219)
T 3kd3_A           81 NLLTDGIKELVQDLKNKGFEIWIFSGGLSES-IQPFADYLNIP  122 (219)
T ss_dssp             TTBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCC
T ss_pred             ccCChhHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHcCCC
Confidence            3478999999999999999999999999887 59999999984

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.25  E-value=1.4e-11  Score=82.62  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=53.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCC-CccccCe
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIH-SMFVPMV   96 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~-~~~~~~~   96 (103)
                      .+++++||+||||++.          ..+++++.+.|++++++|++++++||   ++... ....++.+++. ..+  +.
T Consensus        13 ~~k~i~~D~DGtL~~~----------~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~-~~~~l~~lg~~~~~~--~~   79 (284)
T 2hx1_A           13 KYKCIFFDAFGVLKTY----------NGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQ-LADSYHKLGLFSITA--DK   79 (284)
T ss_dssp             GCSEEEECSBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCTTCCG--GG
T ss_pred             cCCEEEEcCcCCcCcC----------CeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHH-HHHHHHHCCcCCCCH--hh
Confidence            4889999999999972          34678999999999999999999997   55566 47788889887 544  55


Q ss_pred             eeec
Q 034147           97 RLSC  100 (103)
Q Consensus        97 i~~~  100 (103)
                      ++++
T Consensus        80 ii~~   83 (284)
T 2hx1_A           80 IISS   83 (284)
T ss_dssp             EEEH
T ss_pred             EEcH
Confidence            5543

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.25  E-value=1.8e-11  Score=78.95  Aligned_cols=53  Identities=11%  Similarity=0.099  Sum_probs=46.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++|++.++++.|+++ ++++++|+++... +...++.+++..+|  +.+++++.
T Consensus       101 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  153 (238)
T 3ed5_A          101 GHQLIDGAFDLISNLQQQ-FDLYIVTNGVSHT-QYKRLRDSGLFPFF--KDIFVSED  153 (238)
T ss_dssp             CCCBCTTHHHHHHHHHTT-SEEEEEECSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             cCCCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcChHhhh--heEEEecc
Confidence            356889999999999999 9999999999877 58899999999999  88887653

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.25  E-value=2.3e-11  Score=78.46  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             CCceEEEeCCCCcccccccccccCC-CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDE-IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++++||+||||++....+..... .....+.....|+.|+++|++++|+||++... ++..++++|+..+|
T Consensus        24 ~ik~vifD~DGtL~d~~~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~-~~~~l~~lgi~~~~   95 (195)
T 3n07_A           24 QIKLLICDVDGVFSDGLIYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRRSQI-VENRMKALGISLIY   95 (195)
T ss_dssp             TCCEEEECSTTTTSCSCCEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHH-HHHHHHHTTCCEEE
T ss_pred             CCCEEEEcCCCCcCCCcEEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcCHHH-HHHHHHHcCCcEEe
Confidence            4789999999999984332222111 11222334456999999999999999999888 69999999998766

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.25  E-value=2.6e-12  Score=84.07  Aligned_cols=53  Identities=21%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~~~~~~i~~~~  101 (103)
                      ...++|++.++++.|+++|++++++||+.... +...+.+ +++..+|  +.+++++
T Consensus       110 ~~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~-~~~~l~~~~~l~~~f--~~~~~~~  163 (250)
T 3l5k_A          110 TAALMPGAEKLIIHLRKHGIPFALATSSRSAS-FDMKTSRHKEFFSLF--SHIVLGD  163 (250)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCCEEEECSCCHHH-HHHHTTTCHHHHTTS--SCEECTT
T ss_pred             cCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHH-HHHHHHhccCHHhhe--eeEEecc
Confidence            35688999999999999999999999999766 3655544 5777788  7777765

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.25  E-value=5.3e-12  Score=81.54  Aligned_cols=45  Identities=24%  Similarity=0.381  Sum_probs=40.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC--cc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS--MF   92 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~--~~   92 (103)
                      .+++||+.++|++|+++|++++|+||++... ++..++++|+..  +|
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~~~f  131 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPATNVF  131 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCGGGEE
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHH-HHHHHHHcCCCcccEE
Confidence            4688999999999999999999999999887 699999999973  55

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.25  E-value=6.3e-12  Score=81.94  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=46.0

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .++|++.++++.|+++|++++++||++... +...++++++..+|  +.+++++.
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  145 (241)
T 2hoq_A           94 REVPGARKVLIRLKELGYELGIITDGNPVK-QWEKILRLELDDFF--EHVIISDF  145 (241)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEECSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEECCCchh-HHHHHHHcCcHhhc--cEEEEeCC
Confidence            478999999999999999999999999777 58899999999999  88887653

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.24  E-value=2.1e-11  Score=76.50  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=42.8

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ++|++.++++.|+++|++++++|+++ .. +...++++++..+|  +.+++++
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~-~~~~l~~~~~~~~f--~~~~~~~  131 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQ-VLEILEKTSIAAYF--TEVVTSS  131 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC-TH-HHHHHHHTTCGGGE--EEEECGG
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc-HH-HHHHHHHcCCHhhe--eeeeecc
Confidence            78999999999999999999999887 45 58889999998888  7777664

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.24  E-value=2.8e-11  Score=79.56  Aligned_cols=50  Identities=20%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .++|++.++++.|+  |++++++||++... +...++++++..+|  +.+++++.
T Consensus        93 ~~~~~~~~~l~~l~--g~~~~i~t~~~~~~-~~~~l~~~gl~~~f--~~~~~~~~  142 (253)
T 1qq5_A           93 TPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSF--DAVISVDA  142 (253)
T ss_dssp             CBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             CCCccHHHHHHHHc--CCCEEEEeCcCHHH-HHHHHHHCCchhhc--cEEEEccc
Confidence            57899999999999  89999999999887 58899999999888  88887653

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.24  E-value=1.8e-11  Score=79.04  Aligned_cols=48  Identities=29%  Similarity=0.363  Sum_probs=41.9

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ++||+.++++.|+++|++++++||++.   +...++++++..+|  +.+++++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~---~~~~l~~~gl~~~f--~~i~~~~  140 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN---APKILRRLAIIDDF--HAIVDPT  140 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCTTTC--SEECCC-
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh---HHHHHHHcCcHhhc--CEEeeHh
Confidence            789999999999999999999999864   37789999999999  7877765

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.24  E-value=1.5e-12  Score=83.14  Aligned_cols=42  Identities=10%  Similarity=-0.026  Sum_probs=36.9

Q ss_pred             CcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ...++||+.++|++|+++ |++++|+||++... +...++++|+
T Consensus        71 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~gl  113 (193)
T 2i7d_A           71 DLEPIPGALDAVREMNDLPDTQVFICTSPLLKY-HHCVGEKYRW  113 (193)
T ss_dssp             TCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSC-TTTHHHHHHH
T ss_pred             cCccCcCHHHHHHHHHhCCCCeEEEEeCCChhh-HHHHHHHhCc
Confidence            456899999999999999 99999999999877 5888888876

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.24  E-value=1.5e-11  Score=81.06  Aligned_cols=52  Identities=15%  Similarity=0.065  Sum_probs=45.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc-cccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM-FVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~-~~~~~i~~~~  101 (103)
                      ..++||+.++++.|+++|++++++||++... ++..++.+++..+ |  +.+++++
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~-~~~~l~~~~~~~~~~--~~~~~~~  162 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGM-MAPALIAAKEQGYTP--ASTVFAT  162 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHHHTTCCC--SEEECGG
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHH-HHHHHHhcCcccCCC--ceEecHH
Confidence            3678999999999999999999999999877 5889999988777 6  7777765

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.23  E-value=1.1e-11  Score=82.45  Aligned_cols=50  Identities=12%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|+.|++ +++++|+||++... +...++++|+..+|  +.+++++
T Consensus       121 ~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~-~~~~l~~~gl~~~f--~~i~~~~  170 (260)
T 2gfh_A          121 ILADDVKAMLTELRK-EVRLLLLTNGDRQT-QREKIEACACQSYF--DAIVIGG  170 (260)
T ss_dssp             CCCHHHHHHHHHHHT-TSEEEEEECSCHHH-HHHHHHHHTCGGGC--SEEEEGG
T ss_pred             CCCcCHHHHHHHHHc-CCcEEEEECcChHH-HHHHHHhcCHHhhh--heEEecC
Confidence            578999999999998 59999999999877 58899999999999  8887765

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=99.23  E-value=2.2e-11  Score=81.82  Aligned_cols=60  Identities=28%  Similarity=0.360  Sum_probs=50.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .+++++||+||||++.      ..   ...+...++|++|+++|++++++|||+... +...++.+++..
T Consensus         8 ~~~li~~DlDGTLl~~------~~---~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   67 (275)
T 1xvi_A            8 QPLLVFSDLDGTLLDS------HS---YDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQG   67 (275)
T ss_dssp             CCEEEEEECTTTTSCS------SC---CSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTT
T ss_pred             CceEEEEeCCCCCCCC------CC---cCCHHHHHHHHHHHHCCCeEEEEcCCCHHH-HHHHHHHcCCCC
Confidence            3789999999999973      11   234668999999999999999999999888 588999998854

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.23  E-value=5.6e-12  Score=80.85  Aligned_cols=72  Identities=17%  Similarity=0.127  Sum_probs=51.7

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcc-cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~-~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++++||+||||++....+....+... ....-...|++|+++|++++++||++... ++..++++|+..+|
T Consensus        17 ~~ik~vifD~DGtL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~~~-~~~~l~~lgl~~~~   89 (191)
T 3n1u_A           17 KKIKCLICDVDGVLSDGLLHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQNAV-VDHRMEQLGITHYY   89 (191)
T ss_dssp             HTCSEEEECSTTTTBCSCCEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCSHH-HHHHHHHHTCCEEE
T ss_pred             hcCCEEEEeCCCCCCCCceeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcChHH-HHHHHHHcCCccce
Confidence            45899999999999984322221111111 11111225999999999999999999888 69999999998776

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.22  E-value=2.9e-11  Score=81.00  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=51.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ++|+++||+||||++.         ...+.+...++|++++++|++++++||++... +...++.+++.
T Consensus         5 ~~kli~fDlDGTLl~~---------~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~   63 (290)
T 3dnp_A            5 SKQLLALNIDGALLRS---------NGKIHQATKDAIEYVKKKGIYVTLVTNRHFRS-AQKIAKSLKLD   63 (290)
T ss_dssp             -CCEEEECCCCCCSCT---------TSCCCHHHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHTTCC
T ss_pred             cceEEEEcCCCCCCCC---------CCccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHHcCCC
Confidence            3799999999999983         12466889999999999999999999999888 58889999886

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.22  E-value=3.1e-12  Score=81.91  Aligned_cols=46  Identities=11%  Similarity=-0.026  Sum_probs=38.3

Q ss_pred             CcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCCCC-cc
Q 034147           46 IPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHS-MF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l~~-~~   92 (103)
                      ...++||+.++|++|+++ |++++|+||++... ++..++++++.. +|
T Consensus        73 ~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~-~~~~l~~~~l~~~~f  120 (197)
T 1q92_A           73 ELEPLPGAVEAVKEMASLQNTDVFICTSPIKMF-KYCPYEKYAWVEKYF  120 (197)
T ss_dssp             TCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCC-SSHHHHHHHHHHHHH
T ss_pred             cCCcCcCHHHHHHHHHhcCCCeEEEEeCCccch-HHHHHHHhchHHHhc
Confidence            356899999999999999 99999999999776 477777777665 54

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.22  E-value=1.8e-11  Score=81.01  Aligned_cols=51  Identities=22%  Similarity=0.263  Sum_probs=45.3

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|+.|+++|++++++||++... +...++++|+..+|  +.+++++
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f--~~~~~~~  194 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFV-AKWVAEELGLDDYF--AEVLPHE  194 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE--CSCCGGG
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCChhHh--HhcCHHH
Confidence            578999999999999999999999999888 69999999999888  6666553

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=99.22  E-value=1.5e-11  Score=82.61  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=50.6

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++|+++||+||||++.      ..  ..+.+.+.++|++++++|++++++||++... +...++.++..
T Consensus        19 ~~~kli~~DlDGTLl~~------~~--~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~-~~~~~~~l~~~   79 (283)
T 3dao_A           19 GMIKLIATDIDGTLVKD------GS--LLIDPEYMSVIDRLIDKGIIFVVCSGRQFSS-EFKLFAPIKHK   79 (283)
T ss_dssp             CCCCEEEECCBTTTBST------TC--SCCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHTGGGGGG
T ss_pred             cCceEEEEeCcCCCCCC------CC--CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            46899999999999973      11  1356889999999999999999999999888 58887777654

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=99.21  E-value=3.2e-11  Score=81.20  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=50.1

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||++..         ..+.+...+++++++++|++++++||++... +...++.+++..
T Consensus         4 ikli~~DlDGTLl~~~---------~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~~~   62 (288)
T 1nrw_A            4 MKLIAIDLDGTLLNSK---------HQVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKT   62 (288)
T ss_dssp             CCEEEEECCCCCSCTT---------SCCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCC
T ss_pred             eEEEEEeCCCCCCCCC---------CccCHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCC
Confidence            7899999999999731         2356788999999999999999999999888 588888888754

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=99.21  E-value=1.7e-11  Score=80.45  Aligned_cols=59  Identities=24%  Similarity=0.242  Sum_probs=51.3

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|++++|+||||++.         ...+.+.+.+.|++|+++|++++++||++... +...++.+++..
T Consensus         5 ~kli~~DlDGTLl~~---------~~~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~-~~~~~~~l~~~~   63 (227)
T 1l6r_A            5 IRLAAIDVDGNLTDR---------DRLISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGING   63 (227)
T ss_dssp             CCEEEEEHHHHSBCT---------TSCBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCS
T ss_pred             eEEEEEECCCCCcCC---------CCcCCHHHHHHHHHHHHCCCEEEEECCCCcHH-HHHHHHHhCCCC
Confidence            689999999999973         12466889999999999999999999999888 588899998864

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.21  E-value=2.5e-11  Score=78.72  Aligned_cols=67  Identities=16%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---------------hhHHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---------------PDIAKTFLHK   85 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---------------~~i~~~~l~~   85 (103)
                      .+++++||+||||++...+ ........++||+.++|++|+++|++++|+||++.               .. +...+++
T Consensus        30 ~~k~i~~D~DGtl~~~~~y-~~~~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~~~l~~  107 (218)
T 2o2x_A           30 HLPALFLDRDGTINVDTDY-PSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGR-VLELLRE  107 (218)
T ss_dssp             SCCCEEECSBTTTBCCCSC-TTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHH-HHHHHHH
T ss_pred             cCCEEEEeCCCCcCCCCcc-cCCcccCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHH-HHHHHHH
Confidence            4789999999999974211 11123356899999999999999999999999987               56 5888999


Q ss_pred             cCCC
Q 034147           86 LGIH   89 (103)
Q Consensus        86 ~~l~   89 (103)
                      +|+.
T Consensus       108 ~gl~  111 (218)
T 2o2x_A          108 EGVF  111 (218)
T ss_dssp             TTCC
T ss_pred             cCCc
Confidence            9874

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=99.21  E-value=3e-11  Score=84.32  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=52.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc---hhHHHHHHH-HcCCCCccccCe
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA---PDIAKTFLH-KLGIHSMFVPMV   96 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~---~~i~~~~l~-~~~l~~~~~~~~   96 (103)
                      ..++++||+||||+++          ..+.||+.+++++|++.|++++++||++.   ... ...+. .+|+.-  ..+.
T Consensus        12 ~~~~~l~D~DGvl~~g----------~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~-~~~l~~~lgi~~--~~~~   78 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRG----------KKPIAGASDALKLLNRNKIPYILLTNGGGFSERAR-TEFISSKLDVDV--SPLQ   78 (352)
T ss_dssp             CCEEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHH-HHHHHHHHTSCC--CGGG
T ss_pred             cCCEEEEECCCeeEcC----------CeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHH-HHHHHHhcCCCC--Chhh
Confidence            4788999999999973          45789999999999999999999998763   442 34444 688864  3377


Q ss_pred             eeec
Q 034147           97 RLSC  100 (103)
Q Consensus        97 i~~~  100 (103)
                      |+++
T Consensus        79 i~ts   82 (352)
T 3kc2_A           79 IIQS   82 (352)
T ss_dssp             EECT
T ss_pred             Eeeh
Confidence            7765

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=99.21  E-value=3.3e-11  Score=79.66  Aligned_cols=59  Identities=29%  Similarity=0.332  Sum_probs=49.8

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||++.      .   ..+.+...+++++++++|++++++||++... +...++.+++..
T Consensus         3 ~kli~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~G~~~~~aTGR~~~~-~~~~~~~l~~~~   61 (258)
T 2pq0_A            3 RKIVFFDIDGTLLDE------Q---KQLPLSTIEAVRRLKQSGVYVAIATGRAPFM-FEHVRKQLGIDS   61 (258)
T ss_dssp             CCEEEECTBTTTBCT------T---SCCCHHHHHHHHHHHHTTCEEEEECSSCGGG-SHHHHHHHTCCC
T ss_pred             ceEEEEeCCCCCcCC------C---CccCHHHHHHHHHHHHCCCEEEEECCCChHH-HHHHHHhcCCCE
Confidence            689999999999973      1   2356788999999999999999999999888 488888887654

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.21  E-value=3.2e-11  Score=79.92  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+.|+++|++++|+||++. . ....++.+|+..+|  +.+++++
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~-~~~~l~~~gl~~~f--~~~~~~~  155 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDR-R-LEGILGGLGLREHF--DFVLTSE  155 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCT-T-HHHHHHHTTCGGGC--SCEEEHH
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcH-H-HHHHHHhCCcHHhh--hEEEeec
Confidence            36899999999999999999999999775 5 48889999999999  7877764

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=99.20  E-value=2.2e-11  Score=80.70  Aligned_cols=60  Identities=18%  Similarity=0.195  Sum_probs=50.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++|+++||+||||++..         ..+.+...+++++++++|++++++||++... +...++.+++..
T Consensus         4 M~kli~fDlDGTLl~~~---------~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~~~~~~   63 (274)
T 3fzq_A            4 LYKLLILDIDGTLRDEV---------YGIPESAKHAIRLCQKNHCSVVICTGRSMGT-IQDDVLSLGVDG   63 (274)
T ss_dssp             CCCEEEECSBTTTBBTT---------TBCCHHHHHHHHHHHHTTCEEEEECSSCTTT-SCHHHHTTCCSE
T ss_pred             cceEEEEECCCCCCCCC---------CcCCHHHHHHHHHHHHCCCEEEEEeCCChHH-HHHHHHHcCCCE
Confidence            47999999999999841         2356889999999999999999999999888 488888887754

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.20  E-value=3.4e-11  Score=76.76  Aligned_cols=71  Identities=18%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++++||+||||++....+...+.....+ .....+|++|+++|++++|+||++... ++..++++|+..+|
T Consensus        25 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~~~-~~~~l~~lgl~~~~   96 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGLIYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKL-VEDRCATLGITHLY   96 (188)
T ss_dssp             TCSEEEECCCCCCBCSEEEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCCHH-HHHHHHHHTCCEEE
T ss_pred             cCCEEEEeCCCCcCCCCEEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCChHH-HHHHHHHcCCceee
Confidence            579999999999998543332222211111 222348999999999999999999888 69999999987766

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.20  E-value=7.9e-12  Score=88.28  Aligned_cols=74  Identities=23%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             CCCCceEEEeCCCCccccccccc---------------------------------------------ccCCCcccChhH
Q 034147           19 ENLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHA   53 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~~---------------------------------------------~~~~~~~~~~g~   53 (103)
                      .+++++++||+||||++.+....                                             .......++||+
T Consensus       182 ~~~~k~viFD~DgTLi~~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pg~  261 (415)
T 3p96_A          182 RRAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAGQLELMPGA  261 (415)
T ss_dssp             TTCCCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTTTCBTHHHHHHHHHCCBCTTH
T ss_pred             ccCCcEEEEcCcccCcCCchHHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhcCCCHHHHHHHHHhCccCccH
Confidence            45689999999999999653200                                             001234689999


Q ss_pred             HHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           54 KGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        54 ~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      .+++++|+++|++++|+||+.... ++..++++|+..+|.
T Consensus       262 ~e~l~~Lk~~G~~~~ivS~~~~~~-~~~~~~~lgl~~~~~  300 (415)
T 3p96_A          262 RTTLRTLRRLGYACGVVSGGFRRI-IEPLAEELMLDYVAA  300 (415)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCccceee
Confidence            999999999999999999999887 699999999987764

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.20  E-value=4.1e-11  Score=77.20  Aligned_cols=52  Identities=21%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++|++.++++.|+ +|++++++|+++... +...++.+++..+|  +.+++++.
T Consensus       106 ~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~-~~~~l~~~~l~~~f--~~~~~~~~  157 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLA-PQYNLYILSNGFREL-QSRKMRSAGVDRYF--KKIILSED  157 (240)
T ss_dssp             CCBSTTHHHHHHHHT-TTSEEEEEECSCHHH-HHHHHHHHTCGGGC--SEEEEGGG
T ss_pred             CCcCccHHHHHHHHH-cCCeEEEEeCCchHH-HHHHHHHcChHhhc--eeEEEecc
Confidence            467899999999999 899999999999877 58899999999998  88887653

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.19  E-value=5e-11  Score=79.03  Aligned_cols=58  Identities=28%  Similarity=0.324  Sum_probs=48.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe---CCCchhHHHHHHHHcCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T---~~~~~~i~~~~l~~~~l~   89 (103)
                      .+++++||+||||++.          ..+.+++.+++++++++|++++++|   +++... ....++.+|+.
T Consensus        16 ~~~~v~~DlDGTLl~~----------~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~-~~~~~~~lg~~   76 (271)
T 1vjr_A           16 KIELFILDMDGTFYLD----------DSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQD-YVRKLRNMGVD   76 (271)
T ss_dssp             GCCEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHH-HHHHHHHTTCC
T ss_pred             CCCEEEEcCcCcEEeC----------CEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence            4788999999999972          3466899999999999999999999   666666 47778888875

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=99.19  E-value=5.5e-11  Score=79.34  Aligned_cols=58  Identities=22%  Similarity=0.109  Sum_probs=49.2

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||++.      .   ..+.+...++|++ +++|++++++|||+... +...++.+++..
T Consensus         2 ikli~~DlDGTLl~~------~---~~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~-~~~~~~~l~~~~   59 (268)
T 1nf2_A            2 YRVFVFDLDGTLLND------N---LEISEKDRRNIEK-LSRKCYVVFASGRMLVS-TLNVEKKYFKRT   59 (268)
T ss_dssp             BCEEEEECCCCCSCT------T---SCCCHHHHHHHHH-HTTTSEEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             ccEEEEeCCCcCCCC------C---CccCHHHHHHHHH-HhCCCEEEEECCCChHH-HHHHHHHhCCCC
Confidence            689999999999973      1   2355788999999 99999999999999888 588899998754

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.19  E-value=3.8e-11  Score=78.42  Aligned_cols=51  Identities=22%  Similarity=0.328  Sum_probs=44.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|+.|+++|++++++||++... ++..++++++. +|  +.+++++
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~l~-~f--~~~~~~~  159 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEA-VQVLVEELFPG-SF--DFALGEK  159 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHSTT-TC--SEEEEEC
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCc-ce--eEEEecC
Confidence            3578999999999999999999999998777 58899999988 88  7888765

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.17  E-value=4.2e-11  Score=76.08  Aligned_cols=49  Identities=22%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.+ |+.|+++ ++++++||++... ++..++++++..+|  +.+++++
T Consensus        74 ~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  122 (201)
T 2w43_A           74 KAYEDTKY-LKEISEI-AEVYALSNGSINE-VKQHLERNGLLRYF--KGIFSAE  122 (201)
T ss_dssp             EECGGGGG-HHHHHHH-SEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEGG
T ss_pred             ccCCChHH-HHHHHhC-CeEEEEeCcCHHH-HHHHHHHCCcHHhC--cEEEehh
Confidence            57899999 9999999 9999999999777 58899999999989  8888765

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=99.17  E-value=6.1e-11  Score=71.59  Aligned_cols=51  Identities=14%  Similarity=0.103  Sum_probs=39.5

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      +++++||+||||++....   ......+.+++.+++++++++|++++++||++.
T Consensus         1 ik~i~~DlDGTL~~~~~~---~~~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~   51 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQANTS---DYRNVLPRLDVIEQLREYHQLGFEIVISTARNM   51 (126)
T ss_dssp             CCEEEECSTTTTBCCCCS---CGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTT
T ss_pred             CCEEEEecCCCCCCCCCC---ccccCCCCHHHHHHHHHHHhCCCeEEEEeCCCh
Confidence            478999999999973210   000124668999999999999999999999985

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=99.17  E-value=6.8e-11  Score=78.55  Aligned_cols=49  Identities=20%  Similarity=0.234  Sum_probs=41.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      .+|+++||+||||++.      .   ..+.+.+.++|++++++|++++++|||+...+
T Consensus         3 ~~kli~~DlDGTLl~~------~---~~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~~   51 (246)
T 3f9r_A            3 KRVLLLFDVDGTLTPP------R---LCQTDEMRALIKRARGAGFCVGTVGGSDFAKQ   51 (246)
T ss_dssp             CSEEEEECSBTTTBST------T---SCCCHHHHHHHHHHHHTTCEEEEECSSCHHHH
T ss_pred             CceEEEEeCcCCcCCC------C---CccCHHHHHHHHHHHHCCCEEEEECCCCHHHH
Confidence            3789999999999973      1   23568899999999999999999999997663

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.17  E-value=1.3e-11  Score=78.76  Aligned_cols=52  Identities=13%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ...++|++.++++.|+++ ++++++|+++... ++..++++++..+|  +.+++++
T Consensus        81 ~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  132 (209)
T 2hdo_A           81 QIELYPGITSLFEQLPSE-LRLGIVTSQRRNE-LESGMRSYPFMMRM--AVTISAD  132 (209)
T ss_dssp             GCEECTTHHHHHHHSCTT-SEEEEECSSCHHH-HHHHHTTSGGGGGE--EEEECGG
T ss_pred             cCCcCCCHHHHHHHHHhc-CcEEEEeCCCHHH-HHHHHHHcChHhhc--cEEEecC
Confidence            356889999999999999 9999999999777 58899999998888  7777765

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=99.17  E-value=7.2e-11  Score=74.36  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=53.0

Q ss_pred             CceEEEeCCCCccccccccc---------------------------------------ccCCCcccChhHHHHHHHHHH
Q 034147           22 PRLVVFDLDYTLWPFYCECC---------------------------------------YEDEIPYLYPHAKGILEALKE   62 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~---------------------------------------~~~~~~~~~~g~~~~l~~l~~   62 (103)
                      +++++||+||||+|+...+.                                       .......++||+.++|++|++
T Consensus         4 ~~~viFD~DGtL~Ds~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~   83 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEHEGLVMDILKEPGFFRNLDVMPHAQEVVKQLNE   83 (180)
T ss_dssp             CCEEEEETBTTTBCHHHHHHHHHHHHSCCCCCGGGCTTCCC--------CHHHHHHHSTTGGGSCCBCTTHHHHHHHHTT
T ss_pred             ccEEEEeCCCcccccHHHHHHHHHHHhCCCCCHHHHcCccHHHHCCchHHHHHHHHhCcchhccCCCCcCHHHHHHHHHh
Confidence            47899999999999553210                                       001234689999999999998


Q ss_pred             CCCeEEEEeCC---Cchh-HHHHHHHH-cCCCCccccCeeeecc
Q 034147           63 KGIHVAVASRS---PAPD-IAKTFLHK-LGIHSMFVPMVRLSCC  101 (103)
Q Consensus        63 ~G~~v~i~T~~---~~~~-i~~~~l~~-~~l~~~~~~~~i~~~~  101 (103)
                      + ++++|+||+   +... .....+.+ ++...++  +.+++++
T Consensus        84 ~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~--~~i~~~~  124 (180)
T 3bwv_A           84 H-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQ--HFVFCGR  124 (180)
T ss_dssp             T-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCGG--GEEECSC
T ss_pred             c-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcc--cEEEeCC
Confidence            5 999999998   3211 12444555 5665566  6777765

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.17  E-value=3.1e-11  Score=77.67  Aligned_cols=49  Identities=16%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++|+.|++ |++++++||++... ....++.  +..+|  +.+++++
T Consensus        98 ~~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~-~~~~l~~--l~~~f--d~i~~~~  146 (240)
T 3smv_A           98 WPAFPDTVEALQYLKK-HYKLVILSNIDRNE-FKLSNAK--LGVEF--DHIITAQ  146 (240)
T ss_dssp             CCBCTTHHHHHHHHHH-HSEEEEEESSCHHH-HHHHHTT--TCSCC--SEEEEHH
T ss_pred             CCCCCcHHHHHHHHHh-CCeEEEEeCCChhH-HHHHHHh--cCCcc--CEEEEcc
Confidence            3688999999999999 79999999999777 4777776  45677  7777754

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.17  E-value=5.2e-11  Score=75.97  Aligned_cols=52  Identities=25%  Similarity=0.284  Sum_probs=45.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.+++.|++++++|+++... ++..++.+++..+|  +.+++++
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~--~~~~~~~  144 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSF--DALASAE  144 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEECT
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHH-HHHHHHhcCcHhhC--cEEEecc
Confidence            3578999999999999999999999999777 58889999998888  7777654

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.17  E-value=5.8e-11  Score=75.70  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.+++.|++++++|+++... ....++.+++..+|  +.+++++
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~~~~~~~~~~~--~~~~~~~  139 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFR-ILSFLRNHMPDDWF--DIIIGGE  139 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHTSSCTTCC--SEEECGG
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHH-HHHHHHHcCchhhe--eeeeehh
Confidence            4568999999999999999999999998777 58889999998888  7777654

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.16  E-value=1.8e-11  Score=78.06  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=42.9

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH------cCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK------LGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~------~~l~~~~~~~~i~~~~  101 (103)
                      .++|++.++++.|++ |++++++||++... +...++.      +++..+|  +.+++++
T Consensus        89 ~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~-~~~~~~~l~~~~~~~l~~~f--~~~~~~~  144 (211)
T 2i6x_A           89 EISAEKFDYIDSLRP-DYRLFLLSNTNPYV-LDLAMSPRFLPSGRTLDSFF--DKVYASC  144 (211)
T ss_dssp             EECHHHHHHHHHHTT-TSEEEEEECCCHHH-HHHHTSTTSSTTCCCGGGGS--SEEEEHH
T ss_pred             ccChHHHHHHHHHHc-CCeEEEEeCCCHHH-HHHHHhhhccccccCHHHHc--CeEEeec
Confidence            578999999999999 99999999999777 5878887      7888888  7777654

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.16  E-value=6.6e-11  Score=78.64  Aligned_cols=65  Identities=23%  Similarity=0.388  Sum_probs=48.2

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH---HcCCCCccccCeee
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH---KLGIHSMFVPMVRL   98 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~---~~~l~~~~~~~~i~   98 (103)
                      +++++||+||||++.          ..+.+++.+++++++++|++++++||++... .....+   .+|+....  +.++
T Consensus         1 ik~i~~D~DGtL~~~----------~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~-~~~~~~~l~~lg~~~~~--~~i~   67 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRG----------NRAIPGVRELIEFLKERGIPFAFLTNNSTKT-PEMYREKLLKMGIDVSS--SIII   67 (263)
T ss_dssp             CEEEEEECBTTTEET----------TEECTTHHHHHHHHHHHTCCEEEEESCCSSC-HHHHHHHHHTTTCCCCG--GGEE
T ss_pred             CeEEEEeCcCceEeC----------CEeCccHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHHHHHHHCCCCCCh--hhEE
Confidence            468999999999973          2345899999999999999999999988654 244444   46775333  4554


Q ss_pred             e
Q 034147           99 S   99 (103)
Q Consensus        99 ~   99 (103)
                      +
T Consensus        68 ~   68 (263)
T 1zjj_A           68 T   68 (263)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=99.16  E-value=7.1e-11  Score=79.41  Aligned_cols=71  Identities=17%  Similarity=0.112  Sum_probs=56.0

Q ss_pred             CceEEEeCCCCcccccccc----------cc-------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch---hHHHH
Q 034147           22 PRLVVFDLDYTLWPFYCEC----------CY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---DIAKT   81 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~----------~~-------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~---~i~~~   81 (103)
                      .++++||+||||++...++          +.       ......++||+.++++.|+++|++++++||++..   ..+..
T Consensus        58 ~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~  137 (260)
T 3pct_A           58 KKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVD  137 (260)
T ss_dssp             CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHH
T ss_pred             CCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Confidence            4599999999999964331          10       1234679999999999999999999999998754   23788


Q ss_pred             HHHHcCCCCcc
Q 034147           82 FLHKLGIHSMF   92 (103)
Q Consensus        82 ~l~~~~l~~~~   92 (103)
                      .++.+|+..++
T Consensus       138 ~L~~lGi~~~~  148 (260)
T 3pct_A          138 DMKRLGFTGVN  148 (260)
T ss_dssp             HHHHHTCCCCS
T ss_pred             HHHHcCcCccc
Confidence            99999997654

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=99.16  E-value=6.9e-11  Score=80.41  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=49.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH--HHcC-CC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL--HKLG-IH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l--~~~~-l~   89 (103)
                      ++|+++||+||||++.     ..   ..+.+.+.+.|++|+++|++++++|||+... +...+  +.++ +.
T Consensus        26 ~ikli~~DlDGTLl~~-----~~---~~is~~~~~al~~l~~~Gi~v~iaTGR~~~~-~~~~~~~~~l~~~~   88 (301)
T 2b30_A           26 DIKLLLIDFDGTLFVD-----KD---IKVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEENLKKMN   88 (301)
T ss_dssp             CCCEEEEETBTTTBCC-----TT---TCSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHHHHHHT
T ss_pred             cccEEEEECCCCCcCC-----CC---CccCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHhhHHhhcccc
Confidence            4799999999999972     01   2356789999999999999999999999888 58888  8877 64

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.15  E-value=3.7e-12  Score=82.92  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=45.6

Q ss_pred             CCceEEEeCCCCccccccccc-------cc------------------CCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECC-------YE------------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~-------~~------------------~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      .+++++||+||||++....+.       ..                  .....+.+++.+++++|+++|++++|+||++.
T Consensus        36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~  115 (211)
T 2b82_A           36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  115 (211)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence            589999999999998532110       00                  00123567999999999999999999999986


Q ss_pred             hhHHHHHHHH
Q 034147           76 PDIAKTFLHK   85 (103)
Q Consensus        76 ~~i~~~~l~~   85 (103)
                      .. +...++.
T Consensus       116 ~~-~~~~l~~  124 (211)
T 2b82_A          116 TK-TETVSKT  124 (211)
T ss_dssp             CS-SCCHHHH
T ss_pred             HH-HHHHHHH
Confidence            54 2444444

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=99.15  E-value=5.7e-11  Score=79.96  Aligned_cols=72  Identities=14%  Similarity=0.030  Sum_probs=56.2

Q ss_pred             CCceEEEeCCCCcccccccc----------cc-------cCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch---hHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCEC----------CY-------EDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP---DIAK   80 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~----------~~-------~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~---~i~~   80 (103)
                      .+++++||+||||++...++          +.       ......++||+.++++.|+++|++++++||++..   ..+.
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~  136 (262)
T 3ocu_A           57 KKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTI  136 (262)
T ss_dssp             CEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHH
T ss_pred             CCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHH
Confidence            46799999999999864321          10       1234679999999999999999999999988753   3378


Q ss_pred             HHHHHcCCCCcc
Q 034147           81 TFLHKLGIHSMF   92 (103)
Q Consensus        81 ~~l~~~~l~~~~   92 (103)
                      ..++++|+..++
T Consensus       137 ~~L~~lGi~~~~  148 (262)
T 3ocu_A          137 DDMKRLGFNGVE  148 (262)
T ss_dssp             HHHHHHTCSCCS
T ss_pred             HHHHHcCcCccc
Confidence            899999997644

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.14  E-value=1.4e-10  Score=74.96  Aligned_cols=77  Identities=22%  Similarity=0.138  Sum_probs=60.9

Q ss_pred             CCceEEEeCCCCccccccccccc--------------CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYE--------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~--------------~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ..+++++|+||||+.....-...              .-....+||+.++|+++++. ++++|+|++.... ++..++.+
T Consensus        27 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~-a~~vl~~l  104 (195)
T 2hhl_A           27 GKKCVVIDLDETLVHSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASLAKY-ADPVADLL  104 (195)
T ss_dssp             TCCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHH
T ss_pred             CCeEEEEccccceEcccccCCCCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCCHHH-HHHHHHHh
Confidence            46789999999999853210000              01245789999999999998 9999999999888 79999999


Q ss_pred             CCCCccccCeeeecc
Q 034147           87 GIHSMFVPMVRLSCC  101 (103)
Q Consensus        87 ~l~~~~~~~~i~~~~  101 (103)
                      +...+|  ..+++++
T Consensus       105 d~~~~f--~~~l~rd  117 (195)
T 2hhl_A          105 DRWGVF--RARLFRE  117 (195)
T ss_dssp             CCSSCE--EEEECGG
T ss_pred             CCcccE--EEEEEcc
Confidence            998888  6777664

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=99.14  E-value=2.9e-11  Score=80.75  Aligned_cols=57  Identities=23%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChh-HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPH-AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g-~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      +|+++||+||||++.      .   ..+.+. +.++|++++++|++++++|||+... +...++.+++
T Consensus         3 ~kli~~DlDGTLl~~------~---~~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~   60 (271)
T 1rlm_A            3 VKVIVTDMDGTFLND------A---KTYNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKD   60 (271)
T ss_dssp             CCEEEECCCCCCSCT------T---SCCCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTT
T ss_pred             ccEEEEeCCCCCCCC------C---CcCCHHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHhcCC
Confidence            689999999999973      1   234466 4899999999999999999999877 4666666554

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.14  E-value=1.2e-10  Score=78.96  Aligned_cols=58  Identities=28%  Similarity=0.360  Sum_probs=48.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeC---CCchhHHHHHHHHcCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASR---SPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~---~~~~~i~~~~l~~~~l~   89 (103)
                      .+++++||+||||++.          ..++|++.+.+++|+++|++++++||   ++... ....++.+++.
T Consensus        20 ~~k~i~~D~DGTL~~~----------~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~-~~~~~~~~g~~   80 (306)
T 2oyc_A           20 RAQGVLFDCDGVLWNG----------ERAVPGAPELLERLARAGKAALFVSNNSRRARPE-LALRFARLGFG   80 (306)
T ss_dssp             HCSEEEECSBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCC
T ss_pred             hCCEEEECCCCcEecC----------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHH-HHHHHHhcCCC
Confidence            4789999999999972          34678999999999999999999996   55555 36677888875

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.14  E-value=5.7e-11  Score=76.48  Aligned_cols=51  Identities=16%  Similarity=0.209  Sum_probs=43.7

Q ss_pred             cccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           47 PYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ..++|++.++|+.|+++ |++++++||++... +...++.+++..+|  +.++++
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~~~~~  143 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYF--PFGAFA  143 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTC--SCEECT
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcHHH-HHHHHHHCCchhhc--Ccceec
Confidence            45789999999999999 99999999999877 58899999999888  555544

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.13  E-value=1.9e-10  Score=75.41  Aligned_cols=60  Identities=23%  Similarity=0.228  Sum_probs=44.9

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHHcCCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHS   90 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~~~l~~   90 (103)
                      ..+++++||+||||++.          ...++++.++++.++++|++++++|++.   ... ....++.+|+..
T Consensus         5 ~~ik~i~fDlDGTLld~----------~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~-~~~~l~~~g~~~   67 (259)
T 2ho4_A            5 RALKAVLVDLNGTLHIE----------DAAVPGAQEALKRLRATSVMVRFVTNTTKETKKD-LLERLKKLEFEI   67 (259)
T ss_dssp             -CCCEEEEESSSSSCC-------------CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHH-HHHHHHHTTCCC
T ss_pred             hhCCEEEEeCcCcEEeC----------CEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHH-HHHHHHHcCCCc
Confidence            45899999999999983          2345788999999999999999999544   344 355666777643

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.13  E-value=3.9e-11  Score=77.70  Aligned_cols=50  Identities=16%  Similarity=0.068  Sum_probs=40.5

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH------HHcCCCCccccCeeeecc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL------HKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l------~~~~l~~~~~~~~i~~~~  101 (103)
                      .++||+.++|+.|+++ ++++|+||++... +...+      +.+++..+|  +.+++++
T Consensus       112 ~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~-~~~~~~~l~~~~~~~l~~~f--d~i~~~~  167 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREK-YVVYLLSNTNDIH-WKWVCKNAFPYRTFKVEDYF--EKTYLSY  167 (229)
T ss_dssp             CCCHHHHHHHHHHTTT-SEEEEEECCCHHH-HHHHHHHTSCBTTBCHHHHC--SEEEEHH
T ss_pred             hccHHHHHHHHHHHhc-CcEEEEECCChHH-HHHHHhhhhhhccCCHHHhC--CEEEeec
Confidence            3679999999999998 9999999999776 46444      667877788  7777654

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.12  E-value=5e-11  Score=76.72  Aligned_cols=51  Identities=33%  Similarity=0.490  Sum_probs=45.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.|+++ ++++++|+++... +...++.+++..+|  +.+++++
T Consensus        99 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~~~f--~~~~~~~  149 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGK-YHVGMITDSDTEQ-AMAFLDALGIKDLF--DSITTSE  149 (234)
T ss_dssp             CCBCTTHHHHHHHHTTT-SEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEHH
T ss_pred             CCcCcCHHHHHHHHHhC-CcEEEEECCCHHH-HHHHHHHcCcHHHc--ceeEecc
Confidence            45789999999999999 9999999999877 58999999999988  7877754

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.12  E-value=5.3e-12  Score=80.15  Aligned_cols=52  Identities=19%  Similarity=0.151  Sum_probs=41.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-cCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-LGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++|++|+++|++++++||++... +...+++ +++..+|  +.+++++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~~~~~~~l~~~f--~~~~~~~  142 (206)
T 2b0c_A           90 VALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAA--DHIYLSQ  142 (206)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHC--SEEEEHH
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEECCChHH-HHHHHHhccChhhhe--eeEEEec
Confidence            4678999999999999999999999988766 3555555 6666777  7777653

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=99.11  E-value=1e-10  Score=77.47  Aligned_cols=57  Identities=26%  Similarity=0.341  Sum_probs=47.4

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +|+++||+||||+ ..         ..+ +.+.++|++|+++|++++++||++... +...++.+++..
T Consensus         2 ikli~~DlDGTLl-~~---------~~~-~~~~~~l~~l~~~g~~~~i~Tgr~~~~-~~~~~~~~~~~~   58 (249)
T 2zos_A            2 IRLIFLDIDKTLI-PG---------YEP-DPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVET   58 (249)
T ss_dssp             EEEEEECCSTTTC-TT---------SCS-GGGHHHHHHHHHTTEEEEEBCSSCHHH-HHHHHHHHTCCS
T ss_pred             ccEEEEeCCCCcc-CC---------CCc-HHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCc
Confidence            5899999999999 31         112 348999999999999999999999888 588899988753

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.11  E-value=1.5e-10  Score=72.63  Aligned_cols=51  Identities=25%  Similarity=0.336  Sum_probs=43.8

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.++++|++++++|++.... .. .++.+++..+|  +.+++++
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~-~~~~~~~~~~f--~~~~~~~  134 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNA-FT-ILKDLGVESYF--TEILTSQ  134 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHH-HH-HHHHHTCGGGE--EEEECGG
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHH-HH-HHHHcCchhhe--eeEEecC
Confidence            4578999999999999999999999999777 57 88999998888  7776654

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.11  E-value=1.4e-10  Score=73.23  Aligned_cols=67  Identities=22%  Similarity=0.142  Sum_probs=47.9

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccCh-hHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH--HcCCC
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYP-HAKGILEALKEKGIHVAVASRSPAPDIAKTFLH--KLGIH   89 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~-g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~--~~~l~   89 (103)
                      +.+|+++||+||||++....+...++....+. .-...|++|+++|++++|+||+  .. ++..++  .+++.
T Consensus         7 ~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~~L~~Lk~~Gi~~~I~Tg~--~~-~~~~l~~l~lgi~   76 (168)
T 3ewi_A            7 KEIKLLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISER--AC-SKQTLSALKLDCK   76 (168)
T ss_dssp             CCCCEEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHHHHHHHHHTTCEEEEECSS--CC-CHHHHHTTCCCCC
T ss_pred             hcCcEEEEeCccceECCcEEEcCCCCEEEEEecCcHHHHHHHHHCCCEEEEEeCc--HH-HHHHHHHhCCCcE
Confidence            46899999999999986544333333332221 1124799999999999999999  45 578888  66664

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.11  E-value=2e-10  Score=73.70  Aligned_cols=50  Identities=18%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHHcCCCCccccCeeeecc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ++|++.++++.|+++|++++++|++.   ... +...++.+++..+|  +.+++++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~-~~~~l~~~~l~~~f--~~~~~~~  152 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSY-TRLLLERFGLMEFI--DKTFFAD  152 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHH-HHHHHHHTTCGGGC--SEEEEHH
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhH-HHHHHHhCCcHHHh--hhheecc
Confidence            57899999999999999999999998   777 58889999999888  7777653

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.10  E-value=5.9e-11  Score=75.18  Aligned_cols=45  Identities=27%  Similarity=0.268  Sum_probs=38.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..++|++.++++.++++|++++++||++... +...++.+++..+|
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~-~~~~~~~~~~~~~~  119 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAF  119 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHH-HHHHHHHHTCSEEE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHH-HHHHHHHcCCCeEE
Confidence            3567999999999999999999999998777 58888999987655

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.10  E-value=5.5e-11  Score=77.73  Aligned_cols=49  Identities=14%  Similarity=-0.011  Sum_probs=38.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++|+||++... ++..++  ++.. +  +.+++++
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~l~--~l~~-~--~~v~~~~  124 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLE--GIVE-K--DRIYCNH  124 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHT--TTSC-G--GGEEEEE
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHh--cCCC-C--CeEEeee
Confidence            4689999999999999999999999999776 577777  6644 2  4555543

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.09  E-value=2.5e-10  Score=72.73  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=42.2

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.+++.|++++++|++  .. +...++++++..+|  +.+++++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~-~~~~l~~~~l~~~f--~~~~~~~  139 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KN-GPFLLERMNLTGYF--DAIADPA  139 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TT-HHHHHHHTTCGGGC--SEECCTT
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HH-HHHHHHHcChHHHc--ceEeccc
Confidence            457899999999999999999999998  44 47788999998888  7777664

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=99.09  E-value=6.1e-11  Score=80.37  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=46.9

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChh-HHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPH-AKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g-~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ++|+++||+||||++..         ..+.+. ..++|++++++|++++++||++... +...++.++.
T Consensus        36 ~iKli~fDlDGTLld~~---------~~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~-~~~~~~~l~~   94 (304)
T 3l7y_A           36 SVKVIATDMDGTFLNSK---------GSYDHNRFQRILKQLQERDIRFVVASSNPYRQ-LREHFPDCHE   94 (304)
T ss_dssp             CCSEEEECCCCCCSCTT---------SCCCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHTTCTTTGG
T ss_pred             eeEEEEEeCCCCCCCCC---------CccCHHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhCC
Confidence            47999999999999831         234566 7899999999999999999999877 4766666554

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.09  E-value=3.3e-10  Score=72.32  Aligned_cols=77  Identities=22%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             CCceEEEeCCCCccccccccccc--------------CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYE--------------DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~--------------~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ..+++++|+|+||+.....-...              ......+||+.++|+++++. ++++|+|++.... ++..++.+
T Consensus        14 ~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~-a~~vl~~l   91 (181)
T 2ght_A           14 DKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADLL   91 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHH
T ss_pred             CCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCCHHH-HHHHHHHH
Confidence            46789999999999753210000              01246799999999999998 9999999999888 79999999


Q ss_pred             CCCCccccCeeeecc
Q 034147           87 GIHSMFVPMVRLSCC  101 (103)
Q Consensus        87 ~l~~~~~~~~i~~~~  101 (103)
                      +...+|  ..+++++
T Consensus        92 d~~~~f--~~~~~rd  104 (181)
T 2ght_A           92 DKWGAF--RARLFRE  104 (181)
T ss_dssp             CTTCCE--EEEECGG
T ss_pred             CCCCcE--EEEEecc
Confidence            998887  6666654

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.07  E-value=2.7e-11  Score=76.25  Aligned_cols=44  Identities=32%  Similarity=0.422  Sum_probs=38.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..++|++.++++.|+++|++++++|+++... ++.. +++++..++
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~-~~~~~~~~~  121 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEV-LEPF-KELGDEFMA  121 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTT-SGGG-TTTSSEEEE
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHH-HHHH-HHcCchhhe
Confidence            4688999999999999999999999988777 4777 888887663

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.05  E-value=3.1e-10  Score=74.71  Aligned_cols=53  Identities=9%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.++++|++++++|+++... +...++.+++..+|. +.+++++
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~-~~~~l~~~~~~~~~~-~~~~~~~  154 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKP-DFLVTPD  154 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCC-SCCBCGG
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHH-HHHHHHHcCCcccCh-HheecCC
Confidence            3567999999999999999999999999777 588888887766531 4555544

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.05  E-value=6.2e-10  Score=73.56  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=46.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH----cCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK----LGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~----~~l~~   90 (103)
                      ++++++||+||||++.          ....+++.+.++.++++|++++++||+.... .....+.    +|+..
T Consensus         4 ~~k~v~fDlDGTL~~~----------~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~-~~~~~~~l~~~~g~~~   66 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLG----------KEPIPAGKRFVERLQEKDLPFLFVTNNTTKS-PETVAQRLANEFDIHV   66 (264)
T ss_dssp             SCCEEEECCBTTTEET----------TEECHHHHHHHHHHHHTTCCEEEEECCCSSC-HHHHHHHHHHHSCCCC
T ss_pred             cCCEEEEeCCCeEEeC----------CEECcCHHHHHHHHHHCCCeEEEEeCCCCCC-HHHHHHHHHHhcCCCC
Confidence            4789999999999973          2345889999999999999999999988655 3444443    77753

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.04  E-value=4.5e-10  Score=74.37  Aligned_cols=58  Identities=19%  Similarity=0.356  Sum_probs=45.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      ++|+++||+||||++.     .   ...+.+...+.|++++++|++++++||++...+ . .++.+++
T Consensus        11 miKli~~DlDGTLl~~-----~---~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~-~-~~~~l~~   68 (268)
T 3r4c_A           11 MIKVLLLDVDGTLLSF-----E---THKVSQSSIDALKKVHDSGIKIVIATGRAASDL-H-EIDAVPY   68 (268)
T ss_dssp             CCCEEEECSBTTTBCT-----T---TCSCCHHHHHHHHHHHHTTCEEEEECSSCTTCC-G-GGTTSCC
T ss_pred             ceEEEEEeCCCCCcCC-----C---CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHh-H-HHHhcCC
Confidence            5899999999999972     1   123568899999999999999999999997663 3 3455554

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.04  E-value=2.2e-10  Score=73.00  Aligned_cols=45  Identities=16%  Similarity=0.239  Sum_probs=40.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++||+.++++.|+++ ++++|+||++... ++..++++|+..+|
T Consensus        67 ~~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~gl~~~f  111 (206)
T 1rku_A           67 TLKPLEGAVEFVDWLRER-FQVVILSDTFYEF-SQPLMRQLGFPTLL  111 (206)
T ss_dssp             TCCCCTTHHHHHHHHHTT-SEEEEEEEEEHHH-HHHHHHHTTCCCEE
T ss_pred             hcCCCccHHHHHHHHHhc-CcEEEEECChHHH-HHHHHHHcCCccee
Confidence            346799999999999999 9999999999777 69999999998877

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=99.03  E-value=2.1e-10  Score=75.63  Aligned_cols=59  Identities=22%  Similarity=0.263  Sum_probs=44.8

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +++++||+||||++..    .......+.+.+.++|++|+++| +++++|||+... +...++.+
T Consensus         1 ikli~~DlDGTLl~~~----~~~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~~~~-~~~~~~~l   59 (239)
T 1u02_A            1 MSLIFLDYDGTLVPII----MNPEESYADAGLLSLISDLKERF-DTYIVTGRSPEE-ISRFLPLD   59 (239)
T ss_dssp             -CEEEEECBTTTBCCC----SCGGGCCCCHHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHSCSS
T ss_pred             CeEEEEecCCCCcCCC----CCcccCCCCHHHHHHHHHHhcCC-CEEEEeCCCHHH-HHHHhccc
Confidence            4789999999999731    01112346688999999999999 999999999877 46665544

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=99.02  E-value=1.2e-10  Score=77.21  Aligned_cols=55  Identities=27%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      |+++||+||||++..      .  ..+.+...+++++++++|++++++||++ .. +...++.++
T Consensus         3 kli~~DlDGTLl~~~------~--~~i~~~~~~al~~l~~~G~~~~iaTGR~-~~-~~~~~~~l~   57 (261)
T 2rbk_A            3 KALFFDIDGTLVSFE------T--HRIPSSTIEALEAAHAKGLKIFIATGRP-KA-IINNLSELQ   57 (261)
T ss_dssp             CEEEECSBTTTBCTT------T--SSCCHHHHHHHHHHHHTTCEEEEECSSC-GG-GCCSCHHHH
T ss_pred             cEEEEeCCCCCcCCC------C--CcCCHHHHHHHHHHHHCCCEEEEECCCh-HH-HHHHHHHhC
Confidence            789999999999731      1  1256789999999999999999999999 87 466667766

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.02  E-value=4e-10  Score=73.06  Aligned_cols=49  Identities=16%  Similarity=0.122  Sum_probs=40.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.|+++ ++++++||++... +...++.+++.  |  +.+++++
T Consensus       115 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~~~~--f--~~~~~~~  163 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAE-YIIGPLSNGNTSL-LLDMAKNAGIP--W--DVIIGSD  163 (254)
T ss_dssp             CCBCTTHHHHHHHHHHH-SEEEECSSSCHHH-HHHHHHHHTCC--C--SCCCCHH
T ss_pred             CcCCcCHHHHHHHHHhC-CeEEEEeCCCHHH-HHHHHHhCCCC--e--eEEEEcC
Confidence            35789999999999997 9999999999877 58889999985  5  6665543

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.00  E-value=1.4e-10  Score=82.24  Aligned_cols=52  Identities=15%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCC--CchhHHHHHHHHc--CCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRS--PAPDIAKTFLHKL--GIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~--~~~~i~~~~l~~~--~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|+++|++++|+||+  .... ....+...  ++..+|  +.+++++
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~-~~~~~~~~~~~l~~~f--d~i~~~~  154 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRA-ERDGLAQLMCELKMHF--DFLIESC  154 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCST-THHHHHHHHHHHHTTS--SEEEEHH
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccc-hhhHHHHHhhhhhhhe--eEEEecc
Confidence            357899999999999999999999998  2222 13333433  677788  8888764

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.00  E-value=7.2e-10  Score=72.50  Aligned_cols=50  Identities=8%  Similarity=0.099  Sum_probs=42.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ..++|++.++++.|+ +|++++++|+++... +...++.+++..+|  +.++++
T Consensus       111 ~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~-~~~~l~~~~l~~~f--~~i~~~  160 (251)
T 2pke_A          111 VEVIAGVREAVAAIA-ADYAVVLITKGDLFH-QEQKIEQSGLSDLF--PRIEVV  160 (251)
T ss_dssp             CCBCTTHHHHHHHHH-TTSEEEEEEESCHHH-HHHHHHHHSGGGTC--CCEEEE
T ss_pred             CCcCccHHHHHHHHH-CCCEEEEEeCCCHHH-HHHHHHHcCcHHhC--ceeeee
Confidence            356799999999999 899999999999777 58899999998888  676653

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.00  E-value=4.1e-10  Score=75.09  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=44.0

Q ss_pred             CCcccChhHHHHHHHHHHC-CCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEK-GIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~-G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++|++.++++.|++. |++++++|++.... +...++.+++. .|  +.+++++
T Consensus       111 ~~~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~-~~~~l~~~~l~-~f--~~i~~~~  164 (275)
T 2qlt_A          111 EHSIEVPGAVKLCNALNALPKEKWAVATSGTRDM-AKKWFDILKIK-RP--EYFITAN  164 (275)
T ss_dssp             TTCEECTTHHHHHHHHHTSCGGGEEEECSSCHHH-HHHHHHHHTCC-CC--SSEECGG
T ss_pred             cCCCcCcCHHHHHHHHHhccCCeEEEEeCCCHHH-HHHHHHHcCCC-cc--CEEEEcc
Confidence            3456789999999999999 99999999999877 58899999986 35  6666654

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=98.99  E-value=4.8e-10  Score=72.99  Aligned_cols=49  Identities=16%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.|++. ++++++|+++... +...++.+++.  |  +.+++++
T Consensus       119 ~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~-~~~~l~~~g~~--f--~~~~~~~  167 (254)
T 3umc_A          119 LRPWPDTLAGMHALKAD-YWLAALSNGNTAL-MLDVARHAGLP--W--DMLLCAD  167 (254)
T ss_dssp             CEECTTHHHHHHHHTTT-SEEEECCSSCHHH-HHHHHHHHTCC--C--SEECCHH
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCCHHH-HHHHHHHcCCC--c--ceEEeec
Confidence            35789999999999986 9999999999877 58899999985  6  7776654

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=98.99  E-value=4.5e-10  Score=77.70  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=40.8

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      +++|++.++++.|+++|+.+.|||+++... ++.+.+..+...-+..+.|++.
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~-v~~~a~~~~~~ygIp~e~ViG~  194 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAHEEL-VRMVAADPRYGYNAKPENVIGV  194 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHTCGGGSCCCCGGGEEEE
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHhhcccccCCCHHHeEee
Confidence            689999999999999999999999999777 6888887533222333566654

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=98.99  E-value=8.4e-10  Score=72.69  Aligned_cols=47  Identities=28%  Similarity=0.349  Sum_probs=39.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~   77 (103)
                      .+++++||+||||++.      .   ..+.+.+.++|++|+++ ++++++|||+...
T Consensus         5 ~~kli~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~-i~v~iaTGR~~~~   51 (246)
T 2amy_A            5 GPALCLFDVDGTLTAP------R---QKITKEMDDFLQKLRQK-IKIGVVGGSDFEK   51 (246)
T ss_dssp             CSEEEEEESBTTTBCT------T---SCCCHHHHHHHHHHTTT-SEEEEECSSCHHH
T ss_pred             CceEEEEECCCCcCCC------C---cccCHHHHHHHHHHHhC-CeEEEEcCCCHHH
Confidence            5789999999999973      1   23558899999999999 9999999998654

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=98.97  E-value=2.3e-09  Score=70.27  Aligned_cols=62  Identities=16%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe---CCCchhHHHHHHHHcCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T---~~~~~~i~~~~l~~~~l~   89 (103)
                      .+++++||+||||++..      .....+.++..+.++.++++|++++++|   +++... ....+..+|+.
T Consensus        11 ~~k~i~fDlDGTLl~s~------~~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~-~~~~l~~~g~~   75 (271)
T 2x4d_A           11 GVRGVLLDISGVLYDSG------AGGGTAIAGSVEAVARLKRSRLKVRFCTNESAASRAE-LVGQLQRLGFD   75 (271)
T ss_dssp             TCCEEEECCBTTTEECC------TTTCEECTTHHHHHHHHHHSSSEEEEECCCCSSCHHH-HHHHHHHTTCC
T ss_pred             cCCEEEEeCCCeEEecC------CCCCccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHH-HHHHHHHCCCC
Confidence            47999999999999731      0012356788999999999999999999   777666 36677777764

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=98.97  E-value=5e-10  Score=71.91  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=38.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++++.|+++ ++++++||++..      ++.+++..+|  +.+++++
T Consensus       104 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~------l~~~~l~~~f--~~~~~~~  149 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKT-FTLGVITNGNAD------VRRLGLADYF--AFALCAE  149 (230)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEESSCCC------GGGSTTGGGC--SEEEEHH
T ss_pred             CccCcCHHHHHHHHHhC-CeEEEEECCchh------hhhcCcHHHe--eeeEEcc
Confidence            45889999999999998 999999998854      4678888888  7777654

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=98.95  E-value=1.3e-09  Score=72.62  Aligned_cols=52  Identities=27%  Similarity=0.368  Sum_probs=41.6

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      .+++++||+||||++.      .   ..+.+...+.|++|+++ ++++++|||+...+ ...+
T Consensus        12 ~~kli~~DlDGTLl~~------~---~~is~~~~~al~~l~~~-i~v~iaTGR~~~~~-~~~l   63 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPA------R---QKIDPEVAAFLQKLRSR-VQIGVVGGSDYCKI-AEQL   63 (262)
T ss_dssp             -CEEEEEESBTTTBST------T---SCCCHHHHHHHHHHTTT-SEEEEECSSCHHHH-HHHH
T ss_pred             CeEEEEEeCccCCCCC------C---CcCCHHHHHHHHHHHhC-CEEEEEcCCCHHHH-HHHH
Confidence            4799999999999973      1   23558899999999999 99999999987663 4444

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.95  E-value=1.1e-09  Score=72.57  Aligned_cols=52  Identities=27%  Similarity=0.333  Sum_probs=42.7

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +++||+||||++.      .    .+.+.+.++|++++++|++++++||++...+ .    .+++..
T Consensus         2 li~~DlDGTLl~~------~----~i~~~~~~al~~l~~~Gi~v~iaTGR~~~~~-~----~l~~~~   53 (259)
T 3zx4_A            2 IVFTDLDGTLLDE------R----GELGPAREALERLRALGVPVVPVTAKTRKEV-E----ALGLEP   53 (259)
T ss_dssp             EEEECCCCCCSCS------S----SSCSTTHHHHHHHHHTTCCEEEBCSSCHHHH-H----HTTCCS
T ss_pred             EEEEeCCCCCcCC------C----cCCHHHHHHHHHHHHCCCeEEEEeCCCHHHH-H----HcCCCC
Confidence            6899999999973      1    3557889999999999999999999997763 4    666643

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=98.93  E-value=4e-09  Score=68.02  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe---CCCchhHHHHHHHHcCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS---RSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T---~~~~~~i~~~~l~~~~l~   89 (103)
                      +|+++||+||||++..          ...+...++++.+++.|+++.++|   +++...+ ...+..+|+.
T Consensus         3 ~k~i~fDlDGTLl~~~----------~~~~~~~~~~~~l~~~g~~~~~~t~~~g~~~~~~-~~~~~~~g~~   62 (250)
T 2c4n_A            3 IKNVICDIDGVLMHDN----------VAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDL-ANRFATAGVD   62 (250)
T ss_dssp             CCEEEEECBTTTEETT----------EECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHH-HHHHHHTTCC
T ss_pred             ccEEEEcCcceEEeCC----------EeCcCHHHHHHHHHHcCCcEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence            6899999999999831          233455889999999999999999   6665563 5556666653

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.90  E-value=6.6e-09  Score=69.65  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHH--------HHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILE--------ALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~--------~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .+++++||+||||+++.           +.+...+.+.        .+++.|++++++||++... +...++.+++..
T Consensus        21 ~~kliifDlDGTLlds~-----------i~~~~~~~l~~~~~~l~~~~~~~g~~~~~~tGr~~~~-~~~~~~~~g~~~   86 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHT-----------IDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIES-ILDKMGRGKFRY   86 (289)
T ss_dssp             CSEEEEEETBTTTBCSS-----------CCHHHHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHH-HHHHHHHTTCCB
T ss_pred             CCeEEEEECCCCCcCCC-----------CCcchHHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHH-HHHHHHhhccCC
Confidence            57899999999999831           3345555555        4577899999999999888 588899888753

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=98.87  E-value=4.3e-09  Score=70.18  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      .++||+.++|++    |++++|+||++... ++..++++
T Consensus       125 ~~~pgv~e~L~~----g~~l~i~Tn~~~~~-~~~~l~~~  158 (253)
T 2g80_A          125 PVYADAIDFIKR----KKRVFIYSSGSVKA-QKLLFGYV  158 (253)
T ss_dssp             CCCHHHHHHHHH----CSCEEEECSSCHHH-HHHHHHSB
T ss_pred             CCCCCHHHHHHc----CCEEEEEeCCCHHH-HHHHHHhh
Confidence            567888888877    89999999999887 58888877

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=98.83  E-value=5.2e-09  Score=73.75  Aligned_cols=52  Identities=15%  Similarity=0.099  Sum_probs=42.9

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      +++|++.++++.|+++|+++.|||++.... ++.+.+++|+..-+..+.|++.
T Consensus       221 r~~p~~~eLi~~L~~~G~~v~IVSgg~~~~-v~~ia~~lg~~y~ip~~~Vig~  272 (385)
T 4gxt_A          221 RTLDEMVDLYRSLEENGIDCYIVSASFIDI-VRAFATDTNNNYKMKEEKVLGL  272 (385)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHCTTSSCCCCGGGEEEE
T ss_pred             eeCHHHHHHHHHHHHCCCeEEEEcCCcHHH-HHHHHHHhCcccCCCcceEEEe
Confidence            479999999999999999999999999887 6999999887544444555543

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=98.78  E-value=3.5e-09  Score=69.88  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++++|+||||++.      .    ...+...+++++++ +|++++++|||+... +...++.+++.
T Consensus         4 ~li~~DlDGTLl~~------~----~~~~~~~~~l~~~~-~gi~v~iaTGR~~~~-~~~~~~~l~l~   58 (244)
T 1s2o_A            4 LLLISDLDNTWVGD------Q----QALEHLQEYLGDRR-GNFYLAYATGRSYHS-ARELQKQVGLM   58 (244)
T ss_dssp             EEEEECTBTTTBSC------H----HHHHHHHHHHHTTG-GGEEEEEECSSCHHH-HHHHHHHHTCC
T ss_pred             eEEEEeCCCCCcCC------H----HHHHHHHHHHHHhc-CCCEEEEEcCCCHHH-HHHHHHHcCCC
Confidence            38999999999973      1    11256777888766 589999999999888 58888888764

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=98.75  E-value=4.8e-09  Score=71.99  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=41.5

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      ...++||+.++++.|+++|++++++||+.... ++..++++|+..+|.
T Consensus       176 ~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~-~~~~~~~lgl~~~~~  222 (335)
T 3n28_A          176 TLPLMPELPELVATLHAFGWKVAIASGGFTYF-SDYLKEQLSLDYAQS  222 (335)
T ss_dssp             TCCCCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEEE
T ss_pred             hCCcCcCHHHHHHHHHHCCCEEEEEeCCcHHH-HHHHHHHcCCCeEEe
Confidence            34688999999999999999999999999777 699999999987763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=98.71  E-value=6.3e-08  Score=65.31  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=53.3

Q ss_pred             CceEEEeCCCCccccccc----ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh--HHHHHHHH--------cC
Q 034147           22 PRLVVFDLDYTLWPFYCE----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD--IAKTFLHK--------LG   87 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~----~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~--i~~~~l~~--------~~   87 (103)
                      ++.+++|.|||+.+....    |. ......++||+.++|+.|+++|++++++||++...  .+...+++        +|
T Consensus       159 ~~~i~iD~dgtl~~~~~~~~~~~~-~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~~~~~~~~~~~  237 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRGPYDLE-KCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAG  237 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCCTTCGG-GGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHHHHHHHHHTTC
T ss_pred             cceEEEeCCCCcccccCCCchhhh-hccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHhcccccccccC
Confidence            477889999998763211    11 11234689999999999999999999999998542  02556777        88


Q ss_pred             CCCccccCeeeec
Q 034147           88 IHSMFVPMVRLSC  100 (103)
Q Consensus        88 l~~~~~~~~i~~~  100 (103)
                      +  +|  +.++++
T Consensus       238 ~--~~--~~~~~~  246 (301)
T 1ltq_A          238 V--PL--VMQCQR  246 (301)
T ss_dssp             C--CC--SEEEEC
T ss_pred             C--Cc--hheeec
Confidence            8  35  666654

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.63  E-value=4.1e-08  Score=66.07  Aligned_cols=69  Identities=17%  Similarity=0.123  Sum_probs=57.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      ..+++++|+|+++...      ......++||+.++|+.|+++|++++++||++... ++..++.+|+..+|  +.++
T Consensus       142 g~~~i~~~~d~~~~~~------~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~gl~~~f--~~i~  210 (287)
T 3a1c_A          142 AKTAVIVARNGRVEGI------IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVI--AEVL  210 (287)
T ss_dssp             TCEEEEEEETTEEEEE------EEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE--CSCC
T ss_pred             CCeEEEEEECCEEEEE------EEeccccchhHHHHHHHHHHCCCeEEEEeCCCHHH-HHHHHHHhCCceee--eecC
Confidence            4578999999998752      12235689999999999999999999999999887 69999999998887  5443

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=98.62  E-value=1.4e-08  Score=64.98  Aligned_cols=49  Identities=20%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeec
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSC  100 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~  100 (103)
                      ..++|++.++++.++.   +++++|+++... ....++++++..+|. +.++++
T Consensus        86 ~~~~~~~~~~l~~l~~---~~~i~s~~~~~~-~~~~l~~~~l~~~~~-~~~~~~  134 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYFA-PHIYSA  134 (229)
T ss_dssp             CCBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGTT-TCEEEH
T ss_pred             CccCcCHHHHHHHhCC---CEEEEECCChhH-HHHHHHhCChHHhcc-ceEEec
Confidence            3567888888887764   899999999877 588899999877662 334443

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=98.61  E-value=7.9e-08  Score=62.50  Aligned_cols=69  Identities=16%  Similarity=-0.007  Sum_probs=54.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC-cc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS-MF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~-~~   92 (103)
                      .+.++++|+|+||+...... ..+-.....||+.++|+++. +++.++|.|++.... ++..++.++... +|
T Consensus        33 ~~~tLVLDLDeTLvh~~~~~-~~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~~~y-a~~vl~~LDp~~~~f  102 (204)
T 3qle_A           33 RPLTLVITLEDFLVHSEWSQ-KHGWRTAKRPGADYFLGYLS-QYYEIVLFSSNYMMY-SDKIAEKLDPIHAFV  102 (204)
T ss_dssp             CSEEEEEECBTTTEEEEEET-TTEEEEEECTTHHHHHHHHT-TTEEEEEECSSCHHH-HHHHHHHTSTTCSSE
T ss_pred             CCeEEEEeccccEEeeeccc-cCceeEEeCCCHHHHHHHHH-hCCEEEEEcCCcHHH-HHHHHHHhCCCCCeE
Confidence            35789999999999743211 11123567899999999998 579999999999888 799999998763 66

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=98.01  E-value=5.8e-09  Score=69.65  Aligned_cols=48  Identities=23%  Similarity=0.337  Sum_probs=42.5

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      .++||+.++|++|+++|++++++||++... ++..++++|+.++|  ..++
T Consensus       136 ~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~~~~~gl~~~f--~~~~  183 (263)
T 2yj3_A          136 VPRPNLKDYLEKLKNEGLKIIILSGDKEDK-VKELSKELNIQEYY--SNLS  183 (263)
Confidence            478999999999999999999999999888 69999999998887  5443

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=98.53  E-value=1.6e-07  Score=65.92  Aligned_cols=77  Identities=14%  Similarity=0.058  Sum_probs=57.3

Q ss_pred             CCceEEEeCCCCccccccc-----cc--------------------------ccCCCcccChhHHHHHHHHHHCCCeEEE
Q 034147           21 LPRLVVFDLDYTLWPFYCE-----CC--------------------------YEDEIPYLYPHAKGILEALKEKGIHVAV   69 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~-----~~--------------------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i   69 (103)
                      .++.++||+||||+.....     |.                          ...-.....||+.++|+++. .++.++|
T Consensus        17 ~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-~~yeivI   95 (372)
T 3ef0_A           17 KRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYELHI   95 (372)
T ss_dssp             TCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-TTEEEEE
T ss_pred             CCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-cCcEEEE
Confidence            4678999999999986211     00                          01112345799999999999 5799999


Q ss_pred             EeCCCchhHHHHHHHHcCCCC-ccccCeeeec
Q 034147           70 ASRSPAPDIAKTFLHKLGIHS-MFVPMVRLSC  100 (103)
Q Consensus        70 ~T~~~~~~i~~~~l~~~~l~~-~~~~~~i~~~  100 (103)
                      +|++.... +...++.++... +|. ..+++.
T Consensus        96 ~Tas~~~y-A~~vl~~LDp~~~~f~-~ri~sr  125 (372)
T 3ef0_A           96 YTMGTKAY-AKEVAKIIDPTGKLFQ-DRVLSR  125 (372)
T ss_dssp             ECSSCHHH-HHHHHHHHCTTSCSSS-SCEECT
T ss_pred             EeCCcHHH-HHHHHHHhccCCceee-eEEEEe
Confidence            99999888 899999999877 562 256643

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=98.45  E-value=3.6e-07  Score=61.70  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=39.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..++.||+.++++.|+++|++++++|+..... ++..++++|+..
T Consensus       139 ~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~-i~~i~~~~g~~~  182 (297)
T 4fe3_A          139 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYH  182 (297)
T ss_dssp             CCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHH-HHHHHHHTTCCC
T ss_pred             CCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHH-HHHHHHHcCCCc
Confidence            35688999999999999999999999998777 699999999754

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.44  E-value=8.3e-07  Score=61.24  Aligned_cols=68  Identities=22%  Similarity=0.274  Sum_probs=53.5

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ...+++++|+||||+....  ..........||+.++|+++.+ .+.++|.|++.... +...++.++....
T Consensus       138 ~~k~tLVLDLDeTLvh~~~--~~~~~~~~~RP~l~eFL~~l~~-~yeivIfTas~~~y-a~~vld~Ld~~~~  205 (320)
T 3shq_A          138 EGKKLLVLDIDYTLFDHRS--PAETGTELMRPYLHEFLTSAYE-DYDIVIWSATSMRW-IEEKMRLLGVASN  205 (320)
T ss_dssp             TTCEEEEECCBTTTBCSSS--CCSSHHHHBCTTHHHHHHHHHH-HEEEEEECSSCHHH-HHHHHHHTTCTTC
T ss_pred             CCCcEEEEeccccEEcccc--cCCCcceEeCCCHHHHHHHHHh-CCEEEEEcCCcHHH-HHHHHHHhCCCCC
Confidence            3468899999999997532  1122234577999999999996 59999999999888 7999999876543

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=98.39  E-value=3.7e-07  Score=64.35  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccC--eeeecc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPM--VRLSCC  101 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~--~i~~~~  101 (103)
                      ...++||+.++|+.|+++|++++|+||++... +...++++|+..+|  +  .+++++
T Consensus       213 ~~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~-~~~~L~~lgL~~~F--d~~~Ivs~d  267 (384)
T 1qyi_A          213 ILRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYF--EADFIATAS  267 (384)
T ss_dssp             BSSCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGS--CGGGEECHH
T ss_pred             CCCcCcCHHHHHHHHHhCCCEEEEEeCCcHHH-HHHHHHHcCChHhc--CCCEEEecc
Confidence            34688999999999999999999999999888 69999999999999  6  787764

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=98.16  E-value=4.9e-06  Score=55.22  Aligned_cols=51  Identities=12%  Similarity=0.176  Sum_probs=44.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---CCCCccccCeeeec
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---GIHSMFVPMVRLSC  100 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---~l~~~~~~~~i~~~  100 (103)
                      ..++||+.++|+.|+++|++++|+||++... ++..++++   ++..+|  +.++++
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~-~~~~l~~~~~~~l~~~f--d~i~~~  182 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDILELV--DGHFDT  182 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCGGGC--SEEECG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHH-HHHHHHhhcccChHhhc--cEEEec
Confidence            4688999999999999999999999999877 58888855   588889  888775

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.84  E-value=8.8e-07  Score=60.68  Aligned_cols=40  Identities=8%  Similarity=-0.231  Sum_probs=32.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ++++++||+||||++.+              .. +.+.+++..|+.++++||++.
T Consensus        20 ~~kli~fDlDGTLld~~--------------~~-~~l~~~~~~g~~~~~~tGR~~   59 (332)
T 1y8a_A           20 QGHMFFTDWEGPWILTD--------------FA-LELCMAVFNNARFFSNLSEYD   59 (332)
T ss_dssp             CCCEEEECSBTTTBCCC--------------HH-HHHHHHHHCCHHHHHHHHHHH
T ss_pred             CceEEEEECcCCCcCcc--------------HH-HHHHHHHHCCCEEEEEcCCCc
Confidence            47899999999999731              11 677788888989999998876

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=97.63  E-value=0.00018  Score=51.52  Aligned_cols=76  Identities=14%  Similarity=0.051  Sum_probs=55.2

Q ss_pred             CCceEEEeCCCCcccccccc----------cc---------------------cCCCcccChhHHHHHHHHHHCCCeEEE
Q 034147           21 LPRLVVFDLDYTLWPFYCEC----------CY---------------------EDEIPYLYPHAKGILEALKEKGIHVAV   69 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~----------~~---------------------~~~~~~~~~g~~~~l~~l~~~G~~v~i   69 (103)
                      ....+++|+|.||+.....-          +.                     ..-.....||+.++|+++.+ .+.++|
T Consensus        25 ~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~ls~-~yEivI  103 (442)
T 3ef1_A           25 KRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISE-LYELHI  103 (442)
T ss_dssp             TCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHTT-TEEEEE
T ss_pred             CCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHHhC-CcEEEE
Confidence            45668999999999753210          00                     01123457999999999995 699999


Q ss_pred             EeCCCchhHHHHHHHHcCCCC-ccccCeeee
Q 034147           70 ASRSPAPDIAKTFLHKLGIHS-MFVPMVRLS   99 (103)
Q Consensus        70 ~T~~~~~~i~~~~l~~~~l~~-~~~~~~i~~   99 (103)
                      .|.+.... |...++.++... +|. ..+|+
T Consensus       104 fTas~~~Y-A~~Vl~~LDp~~~~f~-~Rl~s  132 (442)
T 3ef1_A          104 YTMGTKAY-AKEVAKIIDPTGKLFQ-DRVLS  132 (442)
T ss_dssp             ECSSCHHH-HHHHHHHHCTTSTTTT-TCEEC
T ss_pred             EcCCCHHH-HHHHHHHhccCCcccc-ceEEE
Confidence            99999888 899999998766 452 33553

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=97.22  E-value=0.00067  Score=50.63  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+++..|+++.-.      ..-..++.|++.+.+++|+++|++++++||.+... +....+++|+..++
T Consensus       436 g~~~l~va~~~~~~G~------i~~~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~  500 (645)
T 3j08_A          436 AKTAVIVARNGRVEGI------IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVI  500 (645)
T ss_dssp             TCCCEEEEETTEEEEE------EEEECCCTTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE
T ss_pred             CCeEEEEEECCEEEEE------EEecCCchhHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHcCCCEEE
Confidence            3566888889988642      12234578999999999999999999999999888 79999999997655

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=97.03  E-value=0.00079  Score=51.04  Aligned_cols=65  Identities=12%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+++++..||++.-.      ..-..++.|++.+.+++|+++|++++++||.+... +....+.+|+..++
T Consensus       533 G~~vl~va~d~~~~G~------i~i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~-a~~ia~~lgi~~v~  597 (736)
T 3rfu_A          533 GASVMFMAVDGKTVAL------LVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRT-AEAVAGTLGIKKVV  597 (736)
T ss_dssp             TCEEEEEEETTEEEEE------EEEECCBCSSHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHHHHTCCCEE
T ss_pred             CCeEEEEEECCEEEEE------EEeeccchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCCEEE
Confidence            4677889999998742      11123577899999999999999999999999888 79999999997655

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=96.96  E-value=0.00019  Score=47.50  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=14.4

Q ss_pred             CCceEEEeCCCCcccc
Q 034147           21 LPRLVVFDLDYTLWPF   36 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~   36 (103)
                      .+++++||+||||++.
T Consensus         9 ~ikaviFDlDGTL~ds   24 (261)
T 1yns_A            9 EVTVILLDIEGTTTPI   24 (261)
T ss_dssp             TCCEEEECCBTTTBCH
T ss_pred             CCCEEEEecCCCccch
Confidence            4899999999999984

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=96.93  E-value=0.0019  Score=48.76  Aligned_cols=65  Identities=17%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+++..||++.-.      ..-..++.|++.+.+++|++.|++++++||.+... +....+.+|+...+
T Consensus       514 g~~~~~va~~~~~~G~------i~i~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~-a~~ia~~lgi~~~~  578 (723)
T 3j09_A          514 AKTAVIVARNGRVEGI------IAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVI  578 (723)
T ss_dssp             TCEEEEEEETTEEEEE------EEEECCSCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE
T ss_pred             CCeEEEEEECCEEEEE------EeecCCcchhHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHcCCcEEE
Confidence            4577888889988742      12234578999999999999999999999999888 79999999997655

>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}

Probab=96.56  E-value=0.029  Score=33.11  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=55.2

Q ss_pred             CcHHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHH
Q 034147            2 GDLEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT   81 (103)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~   81 (103)
                      ++++..++...+.+.......+.+++|+-++-.-          ...-.....++.+.++++|..+.++.-++  . +..
T Consensus        28 ~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~~--~-v~~   94 (130)
T 2kln_A           28 ANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEV----------DLTALDALDQLRTELLRRGIVFAMARVKQ--D-LRE   94 (130)
T ss_dssp             TTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSS----------BCSTTTHHHHHHHHHHTTTEEEEEECCSS--H-HHH
T ss_pred             chHHHHHHHHHHHHhcCCCCceEEEEECCCCChh----------hHHHHHHHHHHHHHHHHCCCEEEEEcCCH--H-HHH
Confidence            3456666666666654322467899999887542          11122457788899999999998775544  4 488


Q ss_pred             HHHHcCCCCccccCeee
Q 034147           82 FLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        82 ~l~~~~l~~~~~~~~i~   98 (103)
                      .++..|+...+....++
T Consensus        95 ~l~~~gl~~~~~~~~i~  111 (130)
T 2kln_A           95 SLRAASLLDKIGEDHIF  111 (130)
T ss_dssp             HHHHCTTHHHHCTTEEE
T ss_pred             HHHHcCChhhcCcceeE
Confidence            89999987655333444

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=96.36  E-value=0.007  Score=44.54  Aligned_cols=39  Identities=21%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc-C
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-G   87 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~-~   87 (103)
                      ....|++..+|+++++.| +++++||++... +...++.+ |
T Consensus       245 v~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~y-v~~~m~yllg  284 (555)
T 2jc9_A          245 VVKDGKLPLLLSRMKEVG-KVFLATNSDYKY-TDKIMTYLFD  284 (555)
T ss_dssp             BCCCTHHHHHHHHHHHHS-EEEEECSSCHHH-HHHHHHHHTC
T ss_pred             cCCChHHHHHHHHHHHcC-CEEEEeCCChHH-HHHHHHHhcC
Confidence            345578999999999999 999999999988 69999887 6

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=96.27  E-value=0.0019  Score=43.12  Aligned_cols=17  Identities=29%  Similarity=0.020  Sum_probs=14.8

Q ss_pred             CceEEEeCCCCcccccc
Q 034147           22 PRLVVFDLDYTLWPFYC   38 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~   38 (103)
                      +++++||+||||+++..
T Consensus        32 i~~viFD~dGTL~ds~~   48 (287)
T 3a1c_A           32 VTAVIFDKTGTLTKGKP   48 (287)
T ss_dssp             CCEEEEECCCCCBCSCC
T ss_pred             CCEEEEeCCCCCcCCCE
Confidence            67899999999999654

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=95.33  E-value=0.036  Score=40.10  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=40.9

Q ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc---------CCCCccccCeeeecc
Q 034147           49 LYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL---------GIHSMFVPMVRLSCC  101 (103)
Q Consensus        49 ~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~---------~l~~~~~~~~i~~~~  101 (103)
                      ..|....+|++|++.|.++.++||++... +...+..+         +|.++|  |.|++..
T Consensus       187 k~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~M~y~~~~~~~~g~dWrdlF--DvVIv~A  245 (470)
T 4g63_A          187 REKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLF--EFVITLA  245 (470)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHTGGGSCTTCCGGGGC--SEEEESC
T ss_pred             CCHhHHHHHHHHHHcCCeEEEeeCCCchH-HHHHHHhhcccCCCCCCChhhhc--CEEEECC
Confidence            45788999999999999999999999888 68887763         466688  8777653

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=95.33  E-value=0.025  Score=44.34  Aligned_cols=42  Identities=17%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++|++.|+++.++||++... +....+.+|+.
T Consensus       603 Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~t-A~~ia~~lgi~  644 (1034)
T 3ixz_A          603 DPPRATVPDAVLKCRTAGIRVIMVTGDHPIT-AKAIAASVGII  644 (1034)
T ss_pred             CCCchhHHHHHHHHHHcCCeEEEEeCCCHHH-HHHHHHHcCCC
Confidence            4688999999999999999999999999888 79999999985

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=95.29  E-value=0.03  Score=43.67  Aligned_cols=44  Identities=16%  Similarity=0.231  Sum_probs=39.4

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      .++.|++.+.+++|++.|+++.++||..... +....+++|+...
T Consensus       602 D~lr~~~~~~I~~l~~~Gi~v~miTGD~~~t-a~~ia~~lgi~~~  645 (995)
T 3ar4_A          602 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFGE  645 (995)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHHTSSCT
T ss_pred             CCCchhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCcCCC
Confidence            3578999999999999999999999999887 7999999999653

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=95.27  E-value=0.007  Score=42.60  Aligned_cols=19  Identities=16%  Similarity=0.114  Sum_probs=15.2

Q ss_pred             CceEEEeCCCCcccccccc
Q 034147           22 PRLVVFDLDYTLWPFYCEC   40 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~   40 (103)
                      +|.|+||+|||+++-+.++
T Consensus         1 ~~~~~fdvdgv~~~~~~~~   19 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCF   19 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHH
T ss_pred             CceEEEecCceeechhhhc
Confidence            4679999999999865553

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=95.26  E-value=0.029  Score=44.01  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      .++.|++.+.+++|++.|+++.++||.+... +....+.+|+.
T Consensus       598 Dplr~~~~~aI~~l~~aGI~v~miTGD~~~t-A~~ia~~lgi~  639 (1028)
T 2zxe_A          598 DPPRAAVPDAVGKCRSAGIKVIMVTGDHPIT-AKAIAKGVGII  639 (1028)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTSS
T ss_pred             CCCChhHHHHHHHHHHcCCEEEEECCCCHHH-HHHHHHHcCCC
Confidence            3678999999999999999999999999888 79999999986

>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}

Probab=94.30  E-value=0.23  Score=29.52  Aligned_cols=59  Identities=17%  Similarity=0.065  Sum_probs=41.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+++|+-++-.-          ...-......+.+.++++|..+.++.-+  +. +...++..|+...+
T Consensus        63 ~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~  121 (143)
T 3llo_A           63 NIHTVILDFTQVNFM----------DSVGVKTLAGIVKEYGDVGIYVYLAGCS--AQ-VVNDLTSNRFFENP  121 (143)
T ss_dssp             CCSEEEEECTTCCCC----------CHHHHHHHHHHHHHHHTTTCEEEEESCC--HH-HHHHHHHTTTTSSG
T ss_pred             CceEEEEECCCCccc----------cHHHHHHHHHHHHHHHHCCCEEEEEeCC--HH-HHHHHHhCCCeecc
Confidence            467899999887442          1112234566778889999999987433  45 48889999988765

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=94.11  E-value=0.067  Score=41.66  Aligned_cols=44  Identities=11%  Similarity=0.107  Sum_probs=39.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..++.|++.+.+++|++.|+++.++||..... +....+++|+..
T Consensus       533 ~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~~~T-A~aIA~~lGI~~  576 (920)
T 1mhs_A          533 MDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGI-ARETSRQLGLGT  576 (920)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCEEEEEESSCHHH-HHHHHHHHTSSC
T ss_pred             eccccccHHHHHHHHhhcCceEEEEcCCCHHH-HHHHHHHcCCCc
Confidence            45688999999999999999999999999887 799999999863

>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}

Probab=94.06  E-value=0.11  Score=30.20  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLS   99 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~   99 (103)
                      ..+.+++|+-++-.-          ......-..++.+++++ |..+.++.-+  +. +...++..|+...+..+.++.
T Consensus        45 ~~~~vilDl~~v~~i----------Dssgl~~L~~~~~~~~~-g~~l~l~~~~--~~-v~~~l~~~gl~~~~~~~~i~~  109 (118)
T 3ny7_A           45 GKRIVILKWDAVPVL----------DAGGLDAFQRFVKRLPE-GCELRVCNVE--FQ-PLRTMARAGIQPIPGRLAFFP  109 (118)
T ss_dssp             TCSEEEEEEEECCCB----------CHHHHHHHHHHHHHCCT-TCEEEEECCC--HH-HHHHHHHTTCCCBTTTEEEES
T ss_pred             CCcEEEEEcCCCCee----------cHHHHHHHHHHHHHHHC-CCEEEEecCC--HH-HHHHHHHcCChhhcChhhhcC
Confidence            467899999776432          11112334566777888 9998877433  45 488899999987664334543

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=94.06  E-value=0.058  Score=41.77  Aligned_cols=43  Identities=12%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .++.|++.+.+++|++.|+++.++||..... +....+++|+..
T Consensus       487 Dp~R~~a~~aI~~l~~aGI~v~MiTGD~~~t-A~~iA~~lGi~~  529 (885)
T 3b8c_A          487 DPPRHDSAETIRRALNLGVNVKMITGDQLAI-GKETGRRLGMGT  529 (885)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCEEEESSCHHH-HTHHHHTTTCTT
T ss_pred             cccchhHHHHHHHHHHcCCcEEEEcCCChHH-HHHHHHHhCCcc
Confidence            4678999999999999999999999999877 789999999853

>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*

Probab=93.53  E-value=0.31  Score=28.50  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeee
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRL   98 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~   98 (103)
                      ...+.+++|+-++-.-          ...-..-..++.++++++|..+.++.-+  +. +...++..|+...+..+.++
T Consensus        47 ~~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~~~~~i~  112 (130)
T 4dgh_A           47 ETPQILILRLKWVPFM----------DITGIQTLEEMIQSFHKRGIKVLISGAN--SR-VSQKLVKAGIVKLVGEQNVY  112 (130)
T ss_dssp             SCCSEEEEECTTCCCC----------CHHHHHHHHHHHHHHHTTTCEEEEECCC--HH-HHHHHHHTTHHHHHCGGGEE
T ss_pred             cCCCEEEEECCCCCcc----------cHHHHHHHHHHHHHHHHCCCEEEEEcCC--HH-HHHHHHHcCChhhcCccccc
Confidence            3567899999887542          1112234566778889999999877433  45 47888988876555323344

>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*

Probab=91.23  E-value=0.42  Score=28.17  Aligned_cols=60  Identities=10%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...+.+++|+-++=.-          ...-.....++.+.++++|..+.++.-+  +. +...++..|+...+
T Consensus        50 ~~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~  109 (135)
T 4dgf_A           50 ETPKVFILRMRRVPVI----------DATGMHALWEFQESCEKRGTILLLSGVS--DR-LYGALNRFGFIEAL  109 (135)
T ss_dssp             SCCSEEEEECTTCSCB----------CHHHHHHHHHHHHHHHHHTCEEEEESCC--HH-HHHHHHHHTHHHHH
T ss_pred             CCCcEEEEEcCCCCcc----------CHHHHHHHHHHHHHHHHCCCEEEEEcCC--HH-HHHHHHHcCChhhc
Confidence            4467788898776432          1112234566778889999999977433  44 37788888876555

>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*

Probab=91.19  E-value=1.3  Score=25.60  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=40.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+++|+.++=.-          ...-..-...+.+.++++|.++.++.-+  +. +...++..|+...|
T Consensus        51 ~~~~vvlDls~V~~i----------DSsGl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~  109 (125)
T 2ka5_A           51 GYNKIFLVLSDVESI----------DSFSLGVIVNILKSISSSGGFFALVSPN--EK-VERVLSLTNLDRIV  109 (125)
T ss_dssp             TCCEEEEECTTCSCC----------CHHHHHHHHHHHHHHHHHTCEEEEECCC--HH-HHHHHHHTTSTTTS
T ss_pred             CCCEEEEECCCCCEE----------cHHHHHHHHHHHHHHHHcCCEEEEEeCC--HH-HHHHHHHcCCCceE
Confidence            467799999888442          1111223456778888999999887433  45 48889999998766

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=89.67  E-value=0.25  Score=36.44  Aligned_cols=17  Identities=35%  Similarity=0.538  Sum_probs=14.8

Q ss_pred             CCCceEEEeCCCCcccc
Q 034147           20 NLPRLVVFDLDYTLWPF   36 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~   36 (103)
                      ++++++-||||+||...
T Consensus        63 ~~I~~iGFDmDyTLa~Y   79 (555)
T 2jc9_A           63 EKIKCFGFDMDYTLAVY   79 (555)
T ss_dssp             GGCCEEEECTBTTTBCB
T ss_pred             cCCCEEEECCccccccc
Confidence            46899999999999963

>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A

Probab=89.51  E-value=1.2  Score=24.96  Aligned_cols=73  Identities=16%  Similarity=0.254  Sum_probs=45.0

Q ss_pred             HHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147            5 EKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +..++...+.+...  ..+.+++|+.|+=.-          ......-...+.++++++|.++.++.-+  +. +...++
T Consensus        28 ~~l~~~l~~~~~~~--~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~   92 (116)
T 1th8_B           28 EELREQVTDVLENR--AIRHIVLNLGQLTFM----------DSSGLGVILGRYKQIKNVGGQMVVCAVS--PA-VKRLFD   92 (116)
T ss_dssp             HHHHHHHHHHHHSS--CCCEEEEEEEEEEEE----------CHHHHHHHHHHHHHHHHTTCCEEEESCC--HH-HHHHHH
T ss_pred             HHHHHHHHHHHhcC--CCcEEEEECCCCcEE----------ccHHHHHHHHHHHHHHHhCCeEEEEeCC--HH-HHHHHH
Confidence            34444444444321  256789999887432          1111123455678888999998876443  45 488899


Q ss_pred             HcCCCCcc
Q 034147           85 KLGIHSMF   92 (103)
Q Consensus        85 ~~~l~~~~   92 (103)
                      ..|+...|
T Consensus        93 ~~gl~~~~  100 (116)
T 1th8_B           93 MSGLFKII  100 (116)
T ss_dssp             HHTGGGTS
T ss_pred             HhCCceeE
Confidence            99987765

>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A

Probab=89.01  E-value=1.8  Score=23.87  Aligned_cols=57  Identities=18%  Similarity=0.159  Sum_probs=38.6

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.+++|+-++=.-          ...-..-...+.++++++|.++.++.-+  +. +...++..|+...|
T Consensus        45 ~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~  101 (110)
T 1sbo_A           45 KKIVLDLSSVSYM----------DSAGLGTLVVILKDAKINGKEFILSSLK--ES-ISRILKLTHLDKIF  101 (110)
T ss_dssp             SEEEEECTTCCCB----------CHHHHHHHHHHHHHHHHTTCEEEEESCC--HH-HHHHHHHTTCGGGS
T ss_pred             cEEEEECCCCcEE----------ccHHHHHHHHHHHHHHHcCCEEEEEeCC--HH-HHHHHHHhCcccee
Confidence            6689999887432          1111123455677788899998876433  45 48889999998776

>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}

Probab=88.82  E-value=1.5  Score=25.12  Aligned_cols=59  Identities=22%  Similarity=0.160  Sum_probs=40.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+.+++|+-++=+-.          ..-..-...+.+++++ +|.++.++.-+  +. +...++..|+...|
T Consensus        47 ~~~~vvlDls~v~~iD----------SsGl~~L~~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~  106 (121)
T 3t6o_A           47 QPRKVLIDLEGVEFFG----------SSFIELLVRGWKRIKEDQQGVFALCSVS--PY-CVEVLQVTHIDEVW  106 (121)
T ss_dssp             SSCEEEEECTTCCEEC----------HHHHHHHHHHHHHHTTSTTCEEEEESCC--HH-HHHHHTTCSGGGGS
T ss_pred             CCCeEEEECCCCCEEc----------HHHHHHHHHHHHHHHHhcCCEEEEEeCC--HH-HHHHHHHhCcccee
Confidence            4678999999975431          1111224456677888 89999877433  45 48889999988776

>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*

Probab=87.86  E-value=2.7  Score=24.40  Aligned_cols=71  Identities=15%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             HHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      ++.+++..++.+..  ...+.+++|+-|+=+-.          ...........+.++..|.+++++.-+  +.+ ...+
T Consensus        27 a~~l~~~ll~~i~~--~~~~~vIlDlsgV~~iD----------s~g~~~L~~~~~~~~l~G~~~~l~Gi~--p~v-a~~l   91 (123)
T 3zxn_A           27 VIQFKEELLHNITG--VAGKGLVIDISALEVVD----------EFVTRVLIEISRLAELLGLPFVLTGIK--PAV-AITL   91 (123)
T ss_dssp             HHHHHHHHHHHHTS--SCCSEEEEECTTCSSCC----------HHHHHHHHHHHHHHHHHTCCEEEECCC--HHH-HHHH
T ss_pred             HHHHHHHHHHHHHh--cCCCEEEEEcCCCCccc----------HHHHHHHHHHHHHHHHCCCEEEEEcCC--HHH-HHHH
Confidence            45566666666653  34678999999985531          111133566778888899998766433  443 7778


Q ss_pred             HHcCCC
Q 034147           84 HKLGIH   89 (103)
Q Consensus        84 ~~~~l~   89 (103)
                      ..+|+.
T Consensus        92 ~~~G~~   97 (123)
T 3zxn_A           92 TEMGLD   97 (123)
T ss_dssp             HHTTCC
T ss_pred             HHhCCC
Confidence            889885

>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}

Probab=87.74  E-value=1.6  Score=24.69  Aligned_cols=56  Identities=9%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++|+-++=.-.          ..-..-...+.++++++|.++.++.-+  +. +...++..|+...|
T Consensus        44 ~vvlDls~v~~iD----------ssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~~gl~~~~   99 (117)
T 4hyl_A           44 KMILDLREVSYMS----------SAGLRVLLSLYRHTSNQQGALVLVGVS--EE-IRDTMEITGFWNFF   99 (117)
T ss_dssp             EEEEEEEEEEEEC----------HHHHHHHHHHHHHHHHTTCEEEEECCC--HH-HHHHHHHHTCGGGC
T ss_pred             eEEEECCCCcEEc----------HHHHHHHHHHHHHHHHcCCEEEEEeCC--HH-HHHHHHHhCcccee
Confidence            6899998874321          111123455667888899998877433  45 48889999998776

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=87.34  E-value=0.63  Score=31.40  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=31.9

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      .+.+++.++++.|++ |++++++|+..... +....+.+++
T Consensus       103 ~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~-~~~~~~~~~~  141 (332)
T 1y8a_A          103 KFVPDAEKAMATLQE-RWTPVVISTSYTQY-LRRTASMIGV  141 (332)
T ss_dssp             CBCTTHHHHHHHHHT-TCEEEEEEEEEHHH-HHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHc-CCcEEEEECCceEE-Ecccchhhhh
Confidence            567999999999999 99999999887555 4666666665

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=86.34  E-value=5  Score=26.86  Aligned_cols=57  Identities=7%  Similarity=0.068  Sum_probs=45.6

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+.++.=+-|+.+..            +.+.+.+-+..|++.|+++++++|+. +.+ ...++++++...|
T Consensus        36 ~k~iVIKiGGs~l~~------------~~~~l~~dIa~L~~~G~~vVlVhgGg-~~i-~~~l~~lg~~~~~   92 (279)
T 3l86_A           36 KDIIVIKIGGVASQQ------------LSGDFLSQIKNWQDAGKQLVIVHGGG-FAI-NKLMEENQVPVKK   92 (279)
T ss_dssp             CCEEEEEECTTGGGS------------CCHHHHHHHHHHHHTTCEEEEEECCH-HHH-HHHHHHTTCCCCE
T ss_pred             CceEEEEEChHHHHh------------HHHHHHHHHHHHHhCCCcEEEEECCH-HHH-HHHHHHcCCCCcc
Confidence            367899999998851            24667788888999999999999986 553 8889999987655

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=85.71  E-value=0.77  Score=29.71  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ..++|++.++++.|+ +|+++ ++||++.
T Consensus       129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~~  155 (263)
T 1zjj_A          129 DLTYEKLKYATLAIR-NGATF-IGTNPDA  155 (263)
T ss_dssp             TCBHHHHHHHHHHHH-TTCEE-EESCCCS
T ss_pred             CCCHHHHHHHHHHHH-CCCEE-EEECCCc
Confidence            457899999999999 89998 8998875

>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}

Probab=85.35  E-value=3.9  Score=23.85  Aligned_cols=66  Identities=12%  Similarity=0.027  Sum_probs=38.8

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      .++++.+......++++++|++-.=.                 ...++++++++.  ..+++++|+...... .......
T Consensus        71 ~~al~~l~~~~~~~dliilD~~l~~~-----------------~g~~~~~~lr~~~~~~~ii~ls~~~~~~~-~~~~~~~  132 (157)
T 3hzh_A           71 EEAVIKYKNHYPNIDIVTLXITMPKM-----------------DGITCLSNIMEFDKNARVIMISALGKEQL-VKDCLIK  132 (157)
T ss_dssp             HHHHHHHHHHGGGCCEEEECSSCSSS-----------------CHHHHHHHHHHHCTTCCEEEEESCCCHHH-HHHHHHT
T ss_pred             HHHHHHHHhcCCCCCEEEEeccCCCc-----------------cHHHHHHHHHhhCCCCcEEEEeccCcHHH-HHHHHHc
Confidence            34444444432257888888752211                 235667777653  488999998876653 4445566


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |...++
T Consensus       133 g~~~~l  138 (157)
T 3hzh_A          133 GAKTFI  138 (157)
T ss_dssp             TCSEEE
T ss_pred             CCCEEE
Confidence            765544

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=85.19  E-value=1.4  Score=29.62  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             cChhHHHHHHHHH-HC----------CCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           49 LYPHAKGILEALK-EK----------GIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        49 ~~~g~~~~l~~l~-~~----------G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      +.+...+.+.++. +.          |++++++||++... ....++.+|++.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~atGr~~~~-l~~~~~~~gld~   95 (335)
T 3n28_A           44 LTPAQFEDMDFFTNRFNAILDMWKVGRYEVALMDGELTSE-HETILKALELDY   95 (335)
T ss_dssp             CCHHHHHHHHHHHTSCCCEEEEEEETTEEEEEESSCCCHH-HHHHHHHHTCEE
T ss_pred             CCHHHHHHHHHHhcccccchheeecccceEEEecCCchHH-HHHHHHHcCCCE
Confidence            3455666676665 34          89999999999998 499999999876

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=84.80  E-value=0.028  Score=36.09  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             ccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147           48 YLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      .+++++.++++.++ +|+++ ++|+.+..
T Consensus       122 ~~~~~~~~~l~~l~-~~~~~-i~t~~~~~  148 (259)
T 2ho4_A          122 FHYQLLNQAFRLLL-DGAPL-IAIHKARY  148 (259)
T ss_dssp             CBHHHHHHHHHHHH-TTCCE-EESCCCSE
T ss_pred             CCHHHHHHHHHHHH-CCCEE-EEECCCCc
Confidence            36789999999999 89999 89987643

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=84.77  E-value=1.2  Score=25.97  Aligned_cols=50  Identities=18%  Similarity=0.256  Sum_probs=33.9

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchh
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPD   77 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~   77 (103)
                      +++++.+..  ..++++++|+.   .+             -..| .+++++++++++|++++|+.....
T Consensus        43 ~eAl~~~~~--~~~DlvllDi~---mP-------------~~~G-~el~~~lr~~~ipvI~lTa~~~~~   92 (123)
T 2lpm_A           43 QEALDIARK--GQFDIAIIDVN---LD-------------GEPS-YPVADILAERNVPFIFATGYGSKG   92 (123)
T ss_dssp             HHHHHHHHH--CCSSEEEECSS---SS-------------SCCS-HHHHHHHHHTCCSSCCBCTTCTTS
T ss_pred             HHHHHHHHh--CCCCEEEEecC---CC-------------CCCH-HHHHHHHHcCCCCEEEEecCccHH
Confidence            455666554  35788888872   11             1235 468889999999999999876443

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=83.44  E-value=4.4  Score=22.95  Aligned_cols=66  Identities=20%  Similarity=0.205  Sum_probs=39.2

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      .++++.+......++++++|++-.  +               ....++++++++.  ..+++++|+...... ....-..
T Consensus        37 ~~a~~~~~~~~~~~dlvi~d~~l~--~---------------~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~-~~~~~~~   98 (143)
T 3jte_A           37 TEGLRIFTENCNSIDVVITDMKMP--K---------------LSGMDILREIKKITPHMAVIILTGHGDLDN-AILAMKE   98 (143)
T ss_dssp             HHHHHHHHHTTTTCCEEEEESCCS--S---------------SCHHHHHHHHHHHCTTCEEEEEECTTCHHH-HHHHHHT
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCC--C---------------CcHHHHHHHHHHhCCCCeEEEEECCCCHHH-HHHHHHh
Confidence            344455543334688899887532  1               1235666666653  588999998876553 4444556


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |...++
T Consensus        99 g~~~~l  104 (143)
T 3jte_A           99 GAFEYL  104 (143)
T ss_dssp             TCSEEE
T ss_pred             CcceeE
Confidence            665544

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=83.28  E-value=1.1  Score=28.68  Aligned_cols=27  Identities=15%  Similarity=0.162  Sum_probs=22.7

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ..++|++.++++.|+ +|+++ |+||++.
T Consensus       125 ~~~~~~~~~~l~~l~-~g~~~-i~tn~~~  151 (264)
T 1yv9_A          125 ELSYEKVVLATLAIQ-KGALF-IGTNPDK  151 (264)
T ss_dssp             TCCHHHHHHHHHHHH-TTCEE-EESCCCS
T ss_pred             CcCHHHHHHHHHHHh-CCCEE-EEECCCC
Confidence            457899999999997 88997 8888765

>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A

Probab=83.08  E-value=4.4  Score=22.65  Aligned_cols=72  Identities=10%  Similarity=0.115  Sum_probs=43.5

Q ss_pred             HhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH
Q 034147            6 KVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK   85 (103)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~   85 (103)
                      ..++...+.+..  ...+.+++|+.++=.-          ...-..-...+.++++++|.++.++.-+  +. +...++.
T Consensus        28 ~l~~~l~~~~~~--~~~~~vvlDls~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l~~   92 (117)
T 1h4x_A           28 QIRAKISTAIFQ--GAVTTIIWNFERLSFM----------DSSGVGLVLGRMRELEAVAGRTILLNPS--PT-MRKVFQF   92 (117)
T ss_dssp             HHHHHHHHHHHH--TSCSEEEEEEEEEEEE----------CTHHHHHHHHHHHHHHTTTCEEEEESCC--HH-HHHHHHH
T ss_pred             HHHHHHHHHHhc--CCCCEEEEECCCCcEe----------chHHHHHHHHHHHHHHHcCCEEEEEeCC--HH-HHHHHHH
Confidence            344444444421  1356689999887432          0111123455667788899998876433  45 4888999


Q ss_pred             cCCCCcc
Q 034147           86 LGIHSMF   92 (103)
Q Consensus        86 ~~l~~~~   92 (103)
                      .++...|
T Consensus        93 ~gl~~~~   99 (117)
T 1h4x_A           93 SGLGPWM   99 (117)
T ss_dssp             TTCGGGE
T ss_pred             hCCceEE
Confidence            9987654

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=82.78  E-value=0.27  Score=32.30  Aligned_cols=44  Identities=9%  Similarity=0.175  Sum_probs=34.7

Q ss_pred             ccChhHHHHHHHHHHC-CCeEEEEeCC---------------------CchhHHHHHHHHcCCCCcc
Q 034147           48 YLYPHAKGILEALKEK-GIHVAVASRS---------------------PAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        48 ~~~~g~~~~l~~l~~~-G~~v~i~T~~---------------------~~~~i~~~~l~~~~l~~~~   92 (103)
                      .+++++.++++.++++ |+++++.|+.                     .... +...++++++..++
T Consensus       122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~~  187 (289)
T 3gyg_A          122 FSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLA-IEKICEEYGVSVNI  187 (289)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHH-HHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHH-HHHHHHHcCCCEEE
Confidence            4568999999999988 9999999977                     4455 47778888876555

>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A

Probab=82.27  E-value=4.4  Score=25.08  Aligned_cols=64  Identities=9%  Similarity=0.122  Sum_probs=45.3

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCC-eEEEEeCCCchhHHHHHHHHcC
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGI-HVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~-~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      ++...++....+.-.+|++|..|--+++              ++..+.|+.+...|. .++++=|++... ...+.++.+
T Consensus        62 ~Eg~~il~~i~~~~~vI~LD~~Gk~~sS--------------~~fA~~l~~~~~~g~~~i~FvIGG~~Gl-~~~v~~rA~  126 (163)
T 4fak_A           62 KEGQRILAKIKPQSTVITLEIQGKMLSS--------------EGLAQELNQRMTQGQSDFVFVIGGSNGL-HKDVLQRSN  126 (163)
T ss_dssp             HHHHHHHHTCCTTSEEEEEEEEEEECCH--------------HHHHHHHHHHHHTTCCEEEEEECBTTBC-CHHHHHHCS
T ss_pred             HHHHHHHHhCCCCCEEEEEcCCCCcCCH--------------HHHHHHHHHHHhcCCcceEEEEECCCcc-CHHHHHhcC
Confidence            3444566665566678999999998863              567888888888885 688888877554 455555543

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=81.73  E-value=2.8  Score=25.95  Aligned_cols=29  Identities=7%  Similarity=0.126  Sum_probs=25.0

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           50 YPHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        50 ~~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      .+.+.++++.++++|.+++.+|+.+...+
T Consensus       126 t~~~i~~~~~ak~~g~~vI~IT~~~~s~L  154 (199)
T 1x92_A          126 SANVIQAIQAAHDREMLVVALTGRDGGGM  154 (199)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEECTTCHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCCcH
Confidence            36789999999999999999999876554

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=80.50  E-value=5.7  Score=26.29  Aligned_cols=69  Identities=22%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      +++-.++...  .+.++.=+-|+.+..          ......+.+-+..+++.|++++|++|+. +. +...++.+++.
T Consensus        11 ~~~pyi~~~~--~~~iViKlGGs~l~~----------~~~~~~~~~~i~~l~~~G~~vVlVhGgG-~~-i~~~~~~~~~~   76 (282)
T 2bty_A           11 EALPYIKEFY--GKTFVIKFGGSAMKQ----------ENAKKAFIQDIILLKYTGIKPIIVHGGG-PA-ISQMMKDLGIE   76 (282)
T ss_dssp             HHHHHHHHHT--TCEEEEEECSHHHHS----------HHHHHHHHHHHHHHHHTTCEEEEEECCS-HH-HHHHHHHHTCC
T ss_pred             HHHHHHHHhc--CCeEEEEECchhhCC----------hhHHHHHHHHHHHHHHCCCcEEEEECCc-HH-HHHHHHHcCCC
Confidence            3444555544  356888999998851          1123456667778888899999999976 55 48888888876


Q ss_pred             Ccc
Q 034147           90 SMF   92 (103)
Q Consensus        90 ~~~   92 (103)
                      ..|
T Consensus        77 ~~~   79 (282)
T 2bty_A           77 PVF   79 (282)
T ss_dssp             CCB
T ss_pred             ccc
Confidence            533

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d1u7pa_	164	c.108.1.17 (A:) Magnesium-dependent phosphatase-1,	7e-11
d1rlma_	269	c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Esc	4e-05
d1nrwa_	285	c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillu	7e-05
d2b30a1	283	c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmod	8e-05
d2rbka1	260	c.108.1.10 (A:2-261) Sugar-phosphate phosphatase B	4e-04
d1rkqa_	271	c.108.1.10 (A:) Hypothetical protein YidA {Escheri	4e-04
d1xvia_	232	c.108.1.10 (A:) Putative mannosyl-3-phosphoglycera	6e-04
d2amya1	243	c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (	7e-04
d1l6ra_	225	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	0.001
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	0.001
d1wr8a_	230	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	0.002

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (127), Expect = 7e-11
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 15/90 (16%)

Query: 21 LPRLVVFDLDYTLWPFYCECCYEDEI---------------PYLYPHAKGILEALKEKGI 65
          LP+L VFDLDYTLWPF+ +   +                    LYP    +L  L+  G+
Sbjct: 4  LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGV 63

Query: 66 HVAVASRSPAPDIAKTFLHKLGIHSMFVPM 95
           VA ASR+     A   L    +   F+  
Sbjct: 64 PVAAASRTSEIQGANQLLELFDLGKYFIQR 93

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]} Length = 269

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +++V D+D T           D   Y  P      + LK++GI   VAS +    +  +F
Sbjct: 3   KVIVTDMDGTF--------LNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQL-ISF 53

Query: 83  LHKLGIHSMFVPMVRLSCC 101
             +L     FV        
Sbjct: 54  FPELKDEISFVAENGALVY 72

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]} Length = 285

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.6 bits (86), Expect = 7e-05
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
          +L+  DLD TL         + ++       +  L   +  GI V V++     D+  + 
Sbjct: 2  KLIAIDLDGTL------LNSKHQVS---LENENALRQAQRDGIEVVVSTGRAHFDV-MSI 51

Query: 83 LHKLGIHSMFV 93
             LGI +  +
Sbjct: 52 FEPLGIKTWVI 62

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]} Length = 283

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

 Score = 37.7 bits (86), Expect = 8e-05
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L++ D D TL        + D+   +       ++   EKG  V++ +      I  + 
Sbjct: 11  KLLLIDFDGTL--------FVDKDIKVPSENIDAIKEAIEKGYMVSICTGRSKVGI-LSA 61

Query: 83  LHKLGIHSMFVPMVRLSCCIM 103
             +  +  M    +       
Sbjct: 62  FGEENLKKMNFYGMPGVYING 82

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 260

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
          + + FD+D TL           E   +       LEA   KG+ + +A+  P   I    
Sbjct: 2  KALFFDIDGTL--------VSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINN-- 51

Query: 83 LHKLGIHSMFVPMV 96
          L +L   ++    +
Sbjct: 52 LSELQDRNLIDGYI 65

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]} Length = 271

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           +L+  D+D TL               + P  K  + A + +G++V + +  P   +   +
Sbjct: 5   KLIAIDMDGTLL---------LPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGV-HNY 54

Query: 83  LHKLGIHSMFVPMVRLSCCIM 103
           L +L +       +  +  ++
Sbjct: 55  LKELHMEQPGDYCITYNGALV 75

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 6e-04
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
          P LV  DLD TL          D   Y +  A   L  L+E  + V + S   + ++   
Sbjct: 4  PLLVFSDLDGTLL---------DSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEM-LY 53

Query: 82 FLHKLGIHSMFVPM 95
              LG+  + +  
Sbjct: 54 LQKTLGLQGLPLIA 67

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 7e-04
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 9/80 (11%)

Query: 22  PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKT 81
           P L +FD+D TL           +I          L+ L++K     V          + 
Sbjct: 3   PALCLFDVDGTLTAP------RQKIT---KEMDDFLQKLRQKIKIGVVGGSDFEKVQEQL 53

Query: 82  FLHKLGIHSMFVPMVRLSCC 101
               +  +    P   L   
Sbjct: 54  GNDVVEKYDYVFPENGLVAY 73

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
          RL   D+D  L          D    +   A   + + ++KG+ V++ S +  P +    
Sbjct: 4  RLAAIDVDGNLT---------DRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVV-YAL 53

Query: 83 LHKLGIHSMFVPM 95
             LGI+      
Sbjct: 54 KIFLGINGPVFGE 66

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 34.0 bits (77), Expect = 0.001
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 42  YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC 101
           Y++ I       K +L  LK  G  + +A+  P           LG+   F      +  
Sbjct: 209 YQEIILRPVDEVKVLLNDLKGAGFELGIATGRP-YTETVVPFENLGLLPYFEADFIATAS 267

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 6/81 (7%), Positives = 20/81 (24%), Gaps = 9/81 (11%)

Query: 23  RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF 82
           + +  D+D T+               ++  A   +   +  GI + + + +         
Sbjct: 3   KAISIDIDGTIT---------YPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAAS 53

Query: 83  LHKLGIHSMFVPMVRLSCCIM 103
           +       +            
Sbjct: 54  ILIGTSGPVVAEDGGAISYKK 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.7
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.61
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.59
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.51
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.51
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.47
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.45
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.43
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.42
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.41
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.36
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.35
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	99.33
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.32
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.31
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.31
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	99.3
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.3
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	99.28
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	99.28
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.26
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	99.26
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.25
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.23
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.22
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	99.2
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	99.2
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.2
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.19
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.15
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	99.13
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.1
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.07
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.07
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	99.06
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.06
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	99.05
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	99.04
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.03
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	98.98
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.97
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	98.93
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	98.93
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	98.9
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	98.89
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	98.82
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	98.75
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	98.73
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	98.6
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	98.6
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.55
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	98.44
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	98.38
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	98.32
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	98.07
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	98.03
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	97.3
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	96.72
d1h4xa_	111	Anti-sigma factor antagonist SpoIIaa {Bacillus sph	94.38
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	94.15
d1vc1a_	110	Anti-sigma factor antagonist SpoIIaa {Thermotoga m	94.0
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	92.26
d1k66a_	149	Response regulator for cyanobacterial phytochrome	92.05
d1k68a_	140	Response regulator for cyanobacterial phytochrome	91.33
d1jx7a_	117	Hypothetical protein YchN {Escherichia coli [TaxId	90.06
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	89.07
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	88.88
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	88.41
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	88.37
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	87.01
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	85.85
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	84.19
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	83.89
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	83.63
d1y8aa1	308	Hypothetical protein AF1437 {Archaeon Archaeoglobu	82.63
d1o6da_	147	Hypothetical protein TM0844 {Thermotoga maritima [	80.3
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	80.07

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=5.3e-17  Score=100.57  Aligned_cols=78  Identities=37%  Similarity=0.642  Sum_probs=62.4

Q ss_pred             CCCceEEEeCCCCccccccccc---------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCECC---------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~---------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +-+|+|+||+|||||+.+.+..               .......++||+.++|++|+++|++++|+|+++...++...++
T Consensus         3 ~~pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~   82 (164)
T d1u7pa_           3 RLPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLE   82 (164)
T ss_dssp             CCCSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHH
T ss_pred             CCCCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccchhhccchh
Confidence            4579999999999998654421               3344567999999999999999999999999887654677789


Q ss_pred             HcCCCCccccCeeee
Q 034147           85 KLGIHSMFVPMVRLS   99 (103)
Q Consensus        85 ~~~l~~~~~~~~i~~   99 (103)
                      ++++..++  ..+.+
T Consensus        83 ~~~~~~~~--~~~~~   95 (164)
T d1u7pa_          83 LFDLGKYF--IQREI   95 (164)
T ss_dssp             HTTCGGGC--SEEEE
T ss_pred             cccccccc--eeeec
Confidence            99988877  55544

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.61  E-value=8.6e-16  Score=97.55  Aligned_cols=56  Identities=34%  Similarity=0.504  Sum_probs=49.7

Q ss_pred             CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      .....++||+.++|++|+++|++++++||++... ++..++++|+.++|  +.+++++.
T Consensus        91 ~~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~-~~~~l~~~gl~~~f--~~~~~~~~  146 (224)
T d2hsza1          91 CNISRLYPNVKETLEALKAQGYILAVVTNKPTKH-VQPILTAFGIDHLF--SEMLGGQS  146 (224)
T ss_dssp             TSSCEECTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTCGGGC--SEEECTTT
T ss_pred             ccccchHHHHHHHHHHHhccCCcccccccccHHH-HHHHHHhcCchhhc--cccccccc
Confidence            3456789999999999999999999999999888 59999999999999  88887653

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.2e-16  Score=98.03  Aligned_cols=53  Identities=25%  Similarity=0.265  Sum_probs=48.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ..++||+.++|++|+++|++++|+||++... +...++++|+.++|  +.+++++.
T Consensus        87 ~~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~-~~~~l~~~~l~~~F--~~i~~~~~  139 (218)
T d1te2a_          87 RPLLPGVREAVALCKEQGLLVGLASASPLHM-LEKVLTMFDLRDSF--DALASAEK  139 (218)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEECTT
T ss_pred             ccccchHHHHHHHhhhccccccccccccccc-cccccccccccccc--cccccccc
Confidence            3578999999999999999999999999888 69999999999999  88988763

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.51  E-value=1.1e-14  Score=93.26  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             CCcccChhHHHHHHHHHHCC-CeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKG-IHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++||+.++|++|+++| ++++|+||++... +...++.+|+.++|  +.+++++
T Consensus        88 ~~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~-~~~~l~~~gl~~~f--d~i~~~~  142 (228)
T d2hcfa1          88 EDITLLEGVRELLDALSSRSDVLLGLLTGNFEAS-GRHKLKLPGIDHYF--PFGAFAD  142 (228)
T ss_dssp             GGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHH-HHHHHHTTTCSTTC--SCEECTT
T ss_pred             cCceecCchHHHHhhhhccccccccccCCCcchh-hhhhhhhhcccccc--ccccccc
Confidence            34578899999999999987 8999999999888 59999999999999  8888765

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.51  E-value=1.5e-14  Score=91.12  Aligned_cols=54  Identities=28%  Similarity=0.364  Sum_probs=46.6

Q ss_pred             CCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           44 DEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        44 ~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .....++||+.++|+.|+++|++++|+||++. . +...++++|+..+|  +.+++++
T Consensus        78 ~~~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~-~~~~l~~~gl~~~f--~~i~~s~  131 (204)
T d2go7a1          78 NAQVVLMPGAREVLAWADESGIQQFIYTHKGN-N-AFTILKDLGVESYF--TEILTSQ  131 (204)
T ss_dssp             GGGCEECTTHHHHHHHHHHTTCEEEEECSSCT-H-HHHHHHHHTCGGGE--EEEECGG
T ss_pred             cccCcccchHHhhhhcccccccchhhhcccch-h-hhhhhhhccccccc--ccccccc
Confidence            34567899999999999999999999999875 4 36789999999999  8888765

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.47  E-value=4.8e-14  Score=88.13  Aligned_cols=53  Identities=21%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++||+.++|++|+++|++++|+||++...  ...++++++..+|  +.+++++
T Consensus        76 ~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~--~~~l~~~~l~~~f--d~i~~~~  128 (187)
T d2fi1a1          76 EHPILFEGVSDLLEDISNQGGRHFLVSHRNDQV--LEILEKTSIAAYF--TEVVTSS  128 (187)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEECSSCTHH--HHHHHHTTCGGGE--EEEECGG
T ss_pred             hcCcccchhHHHHHHHHhhhccccccccCccch--hhhhhhhcccccc--ccccccc
Confidence            456789999999999999999999999987543  5579999999999  8888875

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.45  E-value=1.7e-14  Score=91.13  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=47.0

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...+++||+.++|++|++ +++++|+||++... +...++++++..+|  +.+++++.
T Consensus        79 ~~~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~-~~~~l~~~~l~~~f--~~i~~~~~  132 (207)
T d2hdoa1          79 DQIELYPGITSLFEQLPS-ELRLGIVTSQRRNE-LESGMRSYPFMMRM--AVTISADD  132 (207)
T ss_dssp             GGCEECTTHHHHHHHSCT-TSEEEEECSSCHHH-HHHHHTTSGGGGGE--EEEECGGG
T ss_pred             cccccccchhhhhhhhcc-cccccccccccccc-cccccccccccccc--cccccccc
Confidence            356789999999999986 69999999999888 69999999999999  88887753

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.43  E-value=1.2e-13  Score=89.65  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=46.5

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++||+.++|+.|+++|++++|+||++... +...++++++..+|. +.+++++
T Consensus        96 ~~~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~-~~~~l~~~~l~~~f~-d~~~~~d  150 (257)
T d1swva_          96 RYASPINGVKEVIASLRERGIKIGSTTGYTREM-MDIVAKEAALQGYKP-DFLVTPD  150 (257)
T ss_dssp             GGCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHH-HHHHHHHHHHTTCCC-SCCBCGG
T ss_pred             ccCccCCcHHHHHHHHHhcccceeecCCCchhh-HHHHHHHHhhccccc-ccccccc
Confidence            345689999999999999999999999999888 599999999988762 5566654

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.1e-13  Score=89.16  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++|++.++|+.|++ |++++++||++... ....++++|+..+|  +.+++++.
T Consensus       107 ~~~~~~~~~~~L~~L~~-~~~l~i~Tn~~~~~-~~~~l~~~gl~~~f--d~i~~s~~  159 (247)
T d2gfha1         107 HMILADDVKAMLTELRK-EVRLLLLTNGDRQT-QREKIEACACQSYF--DAIVIGGE  159 (247)
T ss_dssp             TCCCCHHHHHHHHHHHT-TSEEEEEECSCHHH-HHHHHHHHTCGGGC--SEEEEGGG
T ss_pred             cCccCccHHHHHHHhhc-ccceEEeecccchh-hhhhhhhccccccc--cccccccc
Confidence            34688999999999985 79999999999877 58899999999999  88887653

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=5.4e-13  Score=86.91  Aligned_cols=61  Identities=21%  Similarity=0.400  Sum_probs=52.1

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      .+|+++||+||||++.      .   ..+.+.+.++|++|+++|++++++||++... +...++.+++...
T Consensus         3 ~iKli~~DlDGTL~~~------~---~~i~~~~~~al~~L~~~gi~v~i~TGR~~~~-~~~~~~~l~l~~~   63 (271)
T d1rkqa_           3 AIKLIAIDMDGTLLLP------D---HTISPAVKNAIAAARARGVNVVLTTGRPYAG-VHNYLKELHMEQP   63 (271)
T ss_dssp             CCCEEEECCCCCCSCT------T---SCCCHHHHHHHHHHHHTTCEEEEECSSCGGG-THHHHHHTTCCST
T ss_pred             CeeEEEEeCCccccCC------C---CccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhcCcCC
Confidence            3899999999999963      2   2355889999999999999999999999998 4888999988654

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.36  E-value=3.8e-13  Score=84.74  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=46.1

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....+++++.++++.++.+ ++++++|+++... ++..++++|+..+|  +.+++++
T Consensus        81 ~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~-~~~~l~~~gl~~~f--d~v~~~~  133 (210)
T d2ah5a1          81 YEAQLFPQIIDLLEELSSS-YPLYITTTKDTST-AQDMAKNLEIHHFF--DGIYGSS  133 (210)
T ss_dssp             GSCEECTTHHHHHHHHHTT-SCEEEEEEEEHHH-HHHHHHHTTCGGGC--SEEEEEC
T ss_pred             hcccchhHHHHHHhhhhcc-cchhhcccccchh-hhHHHHhhcccccc--ccccccc
Confidence            3457899999999999977 5899999999888 69999999999999  8888765

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=2.5e-13  Score=86.90  Aligned_cols=51  Identities=27%  Similarity=0.368  Sum_probs=45.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++||+.++|++|++ |++++++||++... ....++++|+.++|  +.+++++
T Consensus        99 ~~~~p~~~~~L~~l~~-~~~i~i~Sn~~~~~-~~~~l~~~gl~~~f--d~i~~s~  149 (230)
T d1x42a1          99 GELYPEVVEVLKSLKG-KYHVGMITDSDTEY-LMAHLDALGIKDLF--DSITTSE  149 (230)
T ss_dssp             CCBCTTHHHHHHHHBT-TBEEEEEESSCHHH-HHHHHHHHTCGGGC--SEEEEHH
T ss_pred             CcccccHHHHHHHhhc-cCceeeeecccccc-chhhhccccccccc--ccccccc
Confidence            4578999999999975 79999999999888 59999999999999  8888764

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.33  E-value=1.6e-12  Score=85.12  Aligned_cols=60  Identities=25%  Similarity=0.339  Sum_probs=51.5

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|+++||+||||++.      .   ..+.+.+.+.|++|+++|++++++|||+... +...++.+++..+
T Consensus         1 iKli~~DlDGTLl~~------~---~~i~~~~~~~l~~l~~~Gi~~~i~TGR~~~~-~~~~~~~l~~~~~   60 (285)
T d1nrwa_           1 MKLIAIDLDGTLLNS------K---HQVSLENENALRQAQRDGIEVVVSTGRAHFD-VMSIFEPLGIKTW   60 (285)
T ss_dssp             CCEEEEECCCCCSCT------T---SCCCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHGGGTCCCE
T ss_pred             CeEEEEECCccccCC------C---CccCHHHHHHHHHHHHCCCEEEEECCCCHHH-HHHHHHHhCCCcE
Confidence            589999999999973      2   2345889999999999999999999999988 5999999988653

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.32  E-value=1.6e-12  Score=82.08  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=47.9

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....+++++.++++.++++|++++++|++.... .+..+++.++..+|  +.+++++
T Consensus        90 ~~~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~-~~~~~~~~~~~~~f--d~~~~s~  143 (220)
T d1zrna_          90 LRLAPFSEVPDSLRELKRRGLKLAILSNGSPQS-IDAVVSHAGLRDGF--DHLLSVD  143 (220)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEESG
T ss_pred             ccccccchhHHHHHHHHhcCCeEEeecchHHHH-HHHHHhhccccccc--cceeeee
Confidence            345688999999999999999999999999888 69999999999999  8888775

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.31  E-value=2.1e-12  Score=81.77  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=44.3

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ....++||+.++|+.|++.|++++++|++..   +...++.+++.++|  +.+++++
T Consensus        88 ~~~~~~~g~~~~l~~l~~~~~~i~i~s~~~~---~~~~l~~~~l~~~f--~~i~~~~  139 (221)
T d1o08a_          88 SPADVYPGILQLLKDLRSNKIKIALASASKN---GPFLLERMNLTGYF--DAIADPA  139 (221)
T ss_dssp             CGGGBCTTHHHHHHHHHHTTCEEEECCSCTT---HHHHHHHTTCGGGC--SEECCTT
T ss_pred             ccccccCCceeccccccccccceEEEeecch---hhHHHHhhcccccc--ccccccc
Confidence            3456899999999999999999999998753   36789999999999  8877765

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.31  E-value=2.6e-12  Score=77.32  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             cCCCCceEEEeCCCCccccccc----ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           18 FENLPRLVVFDLDYTLWPFYCE----CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        18 ~~~~~~~~~fD~DGTL~~~~~~----~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      ++..+++++||+||||.+....    |.. .....++|++.++++.|+++|++++++||++.
T Consensus         3 ~~~kpk~vifDiDgTL~~~~~~~~~~~~~-~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~   63 (149)
T d1ltqa1           3 TPGKPKAVIFDVDGTLAKMNGRGPYDLEK-CDTDVINPMVVELSKMYALMGYQIVVVSGRES   63 (149)
T ss_dssp             CTTSCEEEEEETBTTTBCCSSCCTTCGGG-GGGCCBCHHHHHHHHHHHHTTCEEEEEECSCC
T ss_pred             CCCCCcEEEEEcCCCcEeCCCCCcCCccc-cccCccCHHHHHHHHHHHhccCeEEEEecCcH
Confidence            4456899999999999874321    111 12346899999999999999999999999873

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.1e-12  Score=80.93  Aligned_cols=60  Identities=28%  Similarity=0.359  Sum_probs=50.3

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      .+.++++|+||||++.      .   ..+.+.+.+++++|+++|++++++|||+... +...++.+++..
T Consensus         3 ~~~li~~DlDGTLl~~------~---~~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~-~~~~~~~~~~~~   62 (232)
T d1xvia_           3 QPLLVFSDLDGTLLDS------H---SYDWQPAAPWLTRLREANVPVILCSSKTSAE-MLYLQKTLGLQG   62 (232)
T ss_dssp             CCEEEEEECTTTTSCS------S---CCSCCTTHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHTTCTT
T ss_pred             CCEEEEEECCCCccCC------c---CcCCHHHHHHHHHHHHCCCEEEEEeCCChhh-chhHHHHhccCC
Confidence            4557889999999973      1   2355778999999999999999999999988 589999998854

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.9e-13  Score=86.13  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=40.4

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ....++||+.+++++|+++|++++|+|++.... ++..++.+|++.
T Consensus        79 ~~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~-v~~i~~~lgi~~  123 (217)
T d1nnla_          79 QPPHLTPGIRELVSRLQERNVQVFLISGGFRSI-VEHVASKLNIPA  123 (217)
T ss_dssp             SCCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHTTCCG
T ss_pred             hccccCHHHHHHHHHHHhCCCEEEEECCCchHH-HHHHHHHhCCcc
Confidence            345688999999999999999999999999887 699999999974

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=2.7e-12  Score=81.94  Aligned_cols=59  Identities=27%  Similarity=0.417  Sum_probs=49.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ++|++++|+||||++.      ..     .+...++|++++++|++++++|||+... +...++.+++..+
T Consensus         1 miKli~~DlDGTLl~~------~~-----~~~~~~ai~~l~~~G~~~~~aTGR~~~~-~~~~~~~~~~~~~   59 (243)
T d1wzca1           1 MIRLIFLDIDKTLIPG------YE-----PDPAKPIIEELKDMGFEIIFNSSKTRAE-QEYYRKELEVETP   59 (243)
T ss_dssp             CEEEEEECCBTTTBSS------SC-----SGGGHHHHHHHHHTTEEEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             CcEEEEEeCCCCCCCC------CC-----CHHHHHHHHHHHHCCCEEEEEeCCCHHH-HHHHHHHhccccc
Confidence            3689999999999972      11     2457899999999999999999999998 5999999998653

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.28  E-value=6.3e-12  Score=79.46  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|+++||+||||++.         ...+.+.+.+.|++|+++|++++++||++... +...+...++...
T Consensus         2 iK~i~~D~DGTL~~~---------~~~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~-~~~~~~~~~~~~~   61 (230)
T d1wr8a_           2 IKAISIDIDGTITYP---------NRMIHEKALEAIRRAESLGIPIMLVTGNTVQF-AEAASILIGTSGP   61 (230)
T ss_dssp             CCEEEEESTTTTBCT---------TSCBCHHHHHHHHHHHHTTCCEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             ceEEEEecCCCCcCC---------CCccCHHHHHHHHHHHhCCCeEEEEeCCcHHH-HHHHHHhcCCCcc
Confidence            689999999999963         22356889999999999999999999999888 5888888877654

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=7.2e-12  Score=81.38  Aligned_cols=66  Identities=20%  Similarity=0.249  Sum_probs=50.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHHcCCCCccccCee
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMVR   97 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~~~l~~~~~~~~i   97 (103)
                      ++|+++||+||||++.          ..++|++.++++.|+++|++++++||++   +..+ ...++.+|++-..  +.|
T Consensus         2 ~ik~VifDlDGTL~~~----------~~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~-~~~l~~~G~~~~~--~~i   68 (250)
T d2c4na1           2 TIKNVICDIDGVLMHD----------NVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDL-ANRFATAGVDVPD--SVF   68 (250)
T ss_dssp             CCCEEEEECBTTTEET----------TEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHH-HHHHHHTTCCCCG--GGE
T ss_pred             CCCEEEEECCCeeEEC----------CCcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHH-HHHHhhccccccc--eeE
Confidence            4799999999999973          4567899999999999999999999655   3442 5556778875433  555


Q ss_pred             ee
Q 034147           98 LS   99 (103)
Q Consensus        98 ~~   99 (103)
                      ++
T Consensus        69 ~~   70 (250)
T d2c4na1          69 YT   70 (250)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=99.26  E-value=3.3e-12  Score=83.17  Aligned_cols=63  Identities=14%  Similarity=0.071  Sum_probs=51.0

Q ss_pred             ccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCC
Q 034147           17 QFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGI   88 (103)
Q Consensus        17 ~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l   88 (103)
                      +...++|+++||+||||+..     .   ...+.+.+.+.|++|+++|++++++||++... +...++.+++
T Consensus         5 ~~~~~ikli~~DlDGTLl~~-----~---~~~i~~~~~~al~~l~~~Gi~v~i~TGR~~~~-~~~~~~~l~~   67 (283)
T d2b30a1           5 LKGADIKLLLIDFDGTLFVD-----K---DIKVPSENIDAIKEAIEKGYMVSICTGRSKVG-ILSAFGEENL   67 (283)
T ss_dssp             TTTCCCCEEEEETBTTTBCC-----T---TTCSCHHHHHHHHHHHHHTCEEEEECSSCHHH-HHHHHCHHHH
T ss_pred             CcccCccEEEEECCCCCcCC-----C---CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCc
Confidence            44567999999999999841     1   23466889999999999999999999999888 5777776654

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.25  E-value=8.2e-12  Score=81.11  Aligned_cols=53  Identities=21%  Similarity=0.207  Sum_probs=42.3

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      ++++++||+||||+++          ..+.|++.+++++|++.|++++++||++... .....+
T Consensus         1 ~yk~v~fDlDGTL~~~----------~~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~-~~~~~~   53 (253)
T d1yv9a1           1 DYQGYLIDLDGTIYLG----------KEPIPAGKRFVERLQEKDLPFLFVTNNTTKS-PETVAQ   53 (253)
T ss_dssp             SCCEEEECCBTTTEET----------TEECHHHHHHHHHHHHTTCCEEEEECCCSSC-HHHHHH
T ss_pred             CCCEEEEcCCCccEeC----------CCcCccHHHHHHHHHHCCCCEEEEeCCCCCC-HHHHHH
Confidence            4789999999999973          3456899999999999999999999766444 244433

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.23  E-value=1.2e-11  Score=80.57  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC---chhHHHHHHHHcCCCCccccCe
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP---APDIAKTFLHKLGIHSMFVPMV   96 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~---~~~i~~~~l~~~~l~~~~~~~~   96 (103)
                      ..+++++||+||||+++          ..+.|++.+++++|+++|++++++||+.   ... ....+..+|++-..  +.
T Consensus         5 ~~ik~vlFDlDGTL~~~----------~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~-~~~~~~~~g~~~~~--~~   71 (261)
T d1vjra_           5 DKIELFILDMDGTFYLD----------DSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQD-YVRKLRNMGVDVPD--DA   71 (261)
T ss_dssp             GGCCEEEECCBTTTEET----------TEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHH-HHHHHHHTTCCCCG--GG
T ss_pred             HhCCEEEEeCCCeeEEC----------CccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHH-HHHHHHhhcccccc--ce
Confidence            45899999999999983          3567899999999999999999999755   334 24556667775433  66


Q ss_pred             eee
Q 034147           97 RLS   99 (103)
Q Consensus        97 i~~   99 (103)
                      +++
T Consensus        72 v~t   74 (261)
T d1vjra_          72 VVT   74 (261)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            665

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.22  E-value=1.4e-12  Score=83.03  Aligned_cols=46  Identities=11%  Similarity=-0.032  Sum_probs=40.8

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++||+.++++.|+++|++++++|++.... ++..++++++.+++
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~-i~~~l~~l~~~~~~  118 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFF-VYPLLEGIVEKDRI  118 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHTTTSCGGGE
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhh-HHHHHHHcCCccce
Confidence            34688999999999999999999999999888 69999999887654

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.9e-12  Score=82.73  Aligned_cols=61  Identities=25%  Similarity=0.283  Sum_probs=49.0

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      +|+++||+||||++.      ..  ..+.|.+.+.|++|+++|++++++|||+... +...++.+++..+
T Consensus         2 IKli~~DlDGTLl~~------~~--~~~~~~~~~~l~~l~~~gi~~~i~TGR~~~~-~~~~~~~l~~~~~   62 (269)
T d1rlma_           2 VKVIVTDMDGTFLND------AK--TYNQPRFMAQYQELKKRGIKFVVASGNQYYQ-LISFFPELKDEIS   62 (269)
T ss_dssp             CCEEEECCCCCCSCT------TS--CCCHHHHHHHHHHHHHHTCEEEEECSSCHHH-HGGGCTTTTTTSE
T ss_pred             EEEEEEeCCccCcCC------CC--cCChHHHHHHHHHHHHCCCEEEEEcCCCHHH-HHHHHHHhCcccc
Confidence            789999999999962      11  1233678999999999999999999999888 5777887776543

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.20  E-value=1e-11  Score=79.12  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSM   91 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~   91 (103)
                      ++|+++||+||||++.         ...+.+++.+.+++|++.|++++++||++... +......+++..+
T Consensus         2 miKli~~D~DGTL~~~---------~~~i~~~~~~al~~l~~~g~~v~~~TGr~~~~-~~~~~~~~~~~~~   62 (225)
T d1l6ra_           2 MIRLAAIDVDGNLTDR---------DRLISTKAIESIRSAEKKGLTVSLLSGNVIPV-VYALKIFLGINGP   62 (225)
T ss_dssp             CCCEEEEEHHHHSBCT---------TSCBCHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCCSC
T ss_pred             CeEEEEEecCCCCcCC---------CCcCCHHHHHHHHHHHHCCCEEEEEcCCchhh-hHHHHHHcCCCce
Confidence            5789999999999973         23456899999999999999999999999887 5888888887654

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.20  E-value=1.9e-11  Score=79.52  Aligned_cols=46  Identities=15%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      ++|+++||+||||+++          ..+.|++.+++++|+++|++++++||++..
T Consensus         1 tyk~vlFDlDGTL~~~----------~~~i~~a~e~l~~l~~~g~~~~~~TN~s~~   46 (253)
T d1wvia_           1 TYKGYLIDLDGTIYKG----------KDRIPAGEDFVKRLQERQLPYILVTNNTTR   46 (253)
T ss_dssp             CCCEEEEECBTTTEET----------TEECHHHHHHHHHHHHHTCCEEEEECCCSS
T ss_pred             CcCEEEEcCcCceEEC----------CCcCccHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4789999999999973          346799999999999999999999986543

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4e-11  Score=76.12  Aligned_cols=46  Identities=11%  Similarity=0.167  Sum_probs=41.1

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++||+.+++++|+++|++++|+||++... ....++..++.+++
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~-~~~~~~~~~~~~~~  170 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEA-QKLLFGHSTEGDIL  170 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHTBTTBCCG
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHH-HHHHHHHcCcchhh
Confidence            34678999999999999999999999999887 58889999988776

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.15  E-value=6.8e-11  Score=75.43  Aligned_cols=52  Identities=19%  Similarity=0.214  Sum_probs=44.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeeccc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCCI  102 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~~  102 (103)
                      ...++|++.+.|++|+  ++.++++|+++... +...++++++..+|  +.+++++.
T Consensus        91 ~~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~-~~~~~~~~~~~~~f--d~v~~s~~  142 (245)
T d1qq5a_          91 RLTPYPDAAQCLAELA--PLKRAILSNGAPDM-LQALVANAGLTDSF--DAVISVDA  142 (245)
T ss_dssp             SCCBCTTHHHHHHHHT--TSEEEEEESSCHHH-HHHHHHHTTCGGGC--SEEEEGGG
T ss_pred             ccccchhhhHHHHHHh--hhceeEEeccchHH-HHHHHhhccccccc--cccccccc
Confidence            3568899999999886  67899999999887 58999999999999  88888763

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.13  E-value=2.6e-11  Score=78.71  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      |+++||+||||++++        ...+.+.+.++|++++++|++++++|||+...+ ....+
T Consensus         2 k~if~DlDGTL~~~~--------~~~i~~~~~~al~~l~~~gi~v~~~TGR~~~~~-~~l~~   54 (260)
T d2rbka1           2 KALFFDIDGTLVSFE--------THRIPSSTIEALEAAHAKGLKIFIATGRPKAII-NNLSE   54 (260)
T ss_dssp             CEEEECSBTTTBCTT--------TSSCCHHHHHHHHHHHHTTCEEEEECSSCGGGC-CSCHH
T ss_pred             eEEEEECCCCCcCCC--------CCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHH
Confidence            689999999999731        123457889999999999999999999997763 54433

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=3.1e-11  Score=76.01  Aligned_cols=52  Identities=13%  Similarity=0.112  Sum_probs=42.1

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCC----chhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSP----APDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~----~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.++|++|+++|++++++|++.    ... .......+++.++|  +.+++++
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~-~~~~~~~~~l~~~f--d~i~~s~  151 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKR-DSLAQMMCELSQHF--DFLIESC  151 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSH-HHHHHHHHHHGGGC--SEEEEHH
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHH-HHHHHHhcChHhhh--ceeeehh
Confidence            4688999999999999999999999754    233 35556788899999  8888765

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=9.7e-11  Score=72.98  Aligned_cols=53  Identities=15%  Similarity=0.036  Sum_probs=42.9

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      ++++++||+||||+...- +.......+++||+.++|++|+++|++++++||.+
T Consensus         1 ~~~Av~~DrDGtl~~~~~-y~~~~~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~   53 (182)
T d2gmwa1           1 SVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQS   53 (182)
T ss_dssp             CBCEEEECSBTTTBCCCS-SCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECT
T ss_pred             CCCEEEEeCCCCccCCCC-CCCCHHHeeECCCHHHHHHHHhhcCchhhhhhccc
Confidence            368899999999975321 22334456799999999999999999999999987

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.5e-11  Score=74.35  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=40.0

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchh---HHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPD---IAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~---i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      ..++|++.+++.+|+++|++++++||.....   .........++.++|  +.+++++
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~f--d~i~~s~  153 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHF--DFLIESC  153 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTS--SEEEEHH
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhc--cEEEecc
Confidence            4678999999999999999999999875432   123344456677888  8887764

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=8e-11  Score=74.48  Aligned_cols=53  Identities=25%  Similarity=0.267  Sum_probs=41.5

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHH
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      .+|+++||+||||++.         ..++.+.+.++|++|+++| .++++||++.... ...+.
T Consensus         2 ~~kl~~fDlDGTLl~~---------~~~i~~~~~~al~~l~~~g-~~~i~Tgr~~~~~-~~~~~   54 (243)
T d2amya1           2 GPALCLFDVDGTLTAP---------RQKITKEMDDFLQKLRQKI-KIGVVGGSDFEKV-QEQLG   54 (243)
T ss_dssp             CSEEEEEESBTTTBCT---------TSCCCHHHHHHHHHHTTTS-EEEEECSSCHHHH-HHHHC
T ss_pred             CCEEEEEcCcCCeeCC---------CCcCCHHHHHHHHHHHcCC-CEEEEcCCChHHh-HHHHh
Confidence            4789999999999973         2346689999999999988 4789999987663 44433

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1e-10  Score=71.97  Aligned_cols=53  Identities=15%  Similarity=0.054  Sum_probs=41.3

Q ss_pred             CceEEEeCCCCccccccc--ccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           22 PRLVVFDLDYTLWPFYCE--CCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~--~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      .|+++||+||||+.....  .........++||+.++|+.|+++|++++++||.+
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~   56 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQD   56 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             CcEEEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccc
Confidence            578999999999973211  11222345789999999999999999999999875

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.05  E-value=2.9e-10  Score=67.06  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=47.3

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH--HHHHHHHcCCC
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI--AKTFLHKLGIH   89 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i--~~~~l~~~~l~   89 (103)
                      ++||+||||...     .......|.+++.+.|+.|++.|+.+++.|+|+....  +...+++.+++
T Consensus         3 i~vDiDGTl~~~-----~~~~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~   64 (122)
T d2obba1           3 IAVDFDGTIVEH-----RYPRIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   64 (122)
T ss_dssp             EEECCBTTTBCS-----CTTSCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             EEEEcCCCcCCC-----CCCccccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCC
Confidence            799999999863     3444567899999999999999999999999984321  35566666664

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=99.04  E-value=2.6e-10  Score=74.12  Aligned_cols=59  Identities=25%  Similarity=0.163  Sum_probs=46.8

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++|+++||+||||++.      .   ..+.+.+.++|+++++.| +++++|||+... +...+++++...
T Consensus         1 m~Kli~~DlDGTL~~~------~---~~i~~~~~~al~~l~~~~-~~~i~TGR~~~~-~~~~~~~~~~~~   59 (267)
T d1nf2a_           1 MYRVFVFDLDGTLLND------N---LEISEKDRRNIEKLSRKC-YVVFASGRMLVS-TLNVEKKYFKRT   59 (267)
T ss_dssp             CBCEEEEECCCCCSCT------T---SCCCHHHHHHHHHHTTTS-EEEEECSSCHHH-HHHHHHHHSSSC
T ss_pred             CeEEEEEeCCccccCC------c---CccCHHHHHHHHHHHcCC-EEEEECCCChHH-HHHHHHHhcccC
Confidence            4789999999999963      2   235688999999998754 799999999888 477888776543

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.03  E-value=8.6e-11  Score=75.09  Aligned_cols=52  Identities=17%  Similarity=0.071  Sum_probs=41.2

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      +++++||+||||+.... +-......+++||+.++|++|+++|++++|+||.+
T Consensus        23 ~~Aif~DrDGtl~~~~~-y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~   74 (209)
T d2o2xa1          23 LPALFLDRDGTINVDTD-YPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQS   74 (209)
T ss_dssp             CCCEEECSBTTTBCCCS-CTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECH
T ss_pred             CCEEEEeCCCCeECCCC-CCCCHHHeEecccHHHHHHHHHhhCCeEEEecccc
Confidence            57899999999976321 12223446799999999999999999999999854

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.98  E-value=3.8e-10  Score=77.54  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=47.3

Q ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCeeeecc
Q 034147           47 PYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMVRLSCC  101 (103)
Q Consensus        47 ~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~i~~~~  101 (103)
                      .+|++|+.++|++|+++|++++++||++... +...++++|+.++|....+++++
T Consensus       214 i~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~-a~~il~~lgl~~~F~~~~i~~~~  267 (380)
T d1qyia_         214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTE-TVVPFENLGLLPYFEADFIATAS  267 (380)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCGGGSCGGGEECHH
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEECCCCHHH-HHHHHHHcCCcccCCcceEEecc
Confidence            3577899999999999999999999999988 79999999999999666666543

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.97  E-value=1.5e-09  Score=64.09  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=49.0

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch--------------hHHHHHHHHcCC
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP--------------DIAKTFLHKLGI   88 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~--------------~i~~~~l~~~~l   88 (103)
                      +.++||+||||.....   ..-....|.+++.+.++.|++.|+.+++.|+|...              .++...|+.+|+
T Consensus         2 K~i~~DiDGTI~~~~~---~~y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI   78 (124)
T d1xpja_           2 KKLIVDLDGTLTQANT---SDYRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQV   78 (124)
T ss_dssp             CEEEECSTTTTBCCCC---SCGGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTC
T ss_pred             CEEEEeCCCCeECCCC---CCcCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            5689999999986321   11234578999999999999999999999998521              225777888887


Q ss_pred             C
Q 034147           89 H   89 (103)
Q Consensus        89 ~   89 (103)
                      .
T Consensus        79 ~   79 (124)
T d1xpja_          79 P   79 (124)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.93  E-value=1.4e-10  Score=73.24  Aligned_cols=43  Identities=21%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ...++||+.+++++++.   +.+++|++.... +...++++++..+|
T Consensus        83 ~~~~~~g~~~~L~~l~~---~~~i~t~~~~~~-~~~~l~~~~l~~~f  125 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT---PRCICSNSSSHR-LDMMLTKVGLKPYF  125 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS---CEEEEESSCHHH-HHHHHHHTTCGGGT
T ss_pred             ccchhhhHHHHhhhccc---cceeeeecchhh-hhhhhccccccccc
Confidence            45688999999888764   567899999888 59999999999998

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.93  E-value=7.3e-10  Score=69.56  Aligned_cols=50  Identities=24%  Similarity=0.375  Sum_probs=38.5

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      +++||+||||+++.    .......+.+.+.++|++|+++ ++++|+|||+...+
T Consensus         2 Li~~DlDGTL~~~~----~~~~~~~i~~~~~~~l~~l~~~-~~v~i~TGR~~~~l   51 (229)
T d1u02a_           2 LIFLDYDGTLVPII----MNPEESYADAGLLSLISDLKER-FDTYIVTGRSPEEI   51 (229)
T ss_dssp             EEEEECBTTTBCCC----SCGGGCCCCHHHHHHHHHHHHH-SEEEEECSSCHHHH
T ss_pred             EEEEEecCCCCCCC----CChhhCCCCHHHHHHHHHHhhC-CCEEEEcCCCHHHh
Confidence            68999999999631    1223345778899999999875 67999999997663

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.90  E-value=6.6e-10  Score=68.83  Aligned_cols=72  Identities=25%  Similarity=0.200  Sum_probs=56.8

Q ss_pred             CCCceEEEeCCCCccccccccc---------------------------------------------ccCCCcccChhHH
Q 034147           20 NLPRLVVFDLDYTLWPFYCECC---------------------------------------------YEDEIPYLYPHAK   54 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~---------------------------------------------~~~~~~~~~~g~~   54 (103)
                      +.+|+++||+||||++.++...                                             .......+++++.
T Consensus         2 ~kkKlv~FDlDGTL~d~es~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (210)
T d1j97a_           2 KKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEGAE   81 (210)
T ss_dssp             CCCCEEEECCCCCCBSSCHHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHHHHTCCBCTTHH
T ss_pred             CCCeEEEEeCCCCcCCchHHHHHHHHcCCcHHHHHHHHHHhcccchhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHH
Confidence            4579999999999998653210                                             1123346789999


Q ss_pred             HHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           55 GILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        55 ~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +.++.++.+|..++++|++.... +....++.+...++
T Consensus        82 ~~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  118 (210)
T d1j97a_          82 ETIKELKNRGYVVAVVSGGFDIA-VNKIKEKLGLDYAF  118 (210)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEHHH-HHHHHHHHTCSEEE
T ss_pred             HHHHHHHHcCCEEEeeccccccc-ccchhhccchhhhh
Confidence            99999999999999999998777 58888888877655

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=3.1e-10  Score=71.52  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=33.2

Q ss_pred             EEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhH
Q 034147           25 VVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDI   78 (103)
Q Consensus        25 ~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i   78 (103)
                      ++||+||||++.      .   ..+.+.+.++|++++++|+ ++++||+.....
T Consensus         4 ~lFDlDGTLl~~------~---~~is~~~~~~i~~l~~~g~-~~i~tgrr~~~~   47 (244)
T d2fuea1           4 CLFDVDGTLTPA------R---QKIDPEVAAFLQKLRSRVQ-IGVVGGSDYCKI   47 (244)
T ss_dssp             EEEESBTTTBST------T---SCCCHHHHHHHHHHTTTSE-EEEECSSCHHHH
T ss_pred             EEEccccCccCC------C---CcCCHHHHHHHHHHHhCCC-EEEEecCChhhh
Confidence            457999999973      2   2356889999999999996 556777765553

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1.8e-10  Score=70.37  Aligned_cols=54  Identities=19%  Similarity=0.154  Sum_probs=42.0

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc-CCCCccccCeeeecc
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL-GIHSMFVPMVRLSCC  101 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~-~l~~~~~~~~i~~~~  101 (103)
                      ....+++++.+++..++++|++++++|+++... +...+..+ ++..+|  +.+++++
T Consensus        81 ~~~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~-~~~~~~~~~~l~~~f--d~v~~s~  135 (197)
T d2b0ca1          81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLH-TTFWPEEYPEIRDAA--DHIYLSQ  135 (197)
T ss_dssp             CEEEECHHHHHHHHHHHHTTCEEEEEECCCCCT-TSCCGGGCHHHHHHC--SEEEEHH
T ss_pred             hccccCchhHHHHHHHHhcCCeEEEEeCccHHH-HHHHHHHcccchhhc--cceeecc
Confidence            335688999999999999999999999888666 35555554 677778  7777664

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.75  E-value=3.8e-09  Score=67.53  Aligned_cols=57  Identities=16%  Similarity=0.073  Sum_probs=42.6

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ..+++||+||||++..         .  .+...+.+.+++++|+.++++||++... +...++.+++..
T Consensus         3 ~~li~~DlDGTL~~~~---------~--~~~~~~~~~~~~~~g~~v~i~TGR~~~~-~~~~~~~~~~~~   59 (244)
T d1s2oa1           3 QLLLISDLDNTWVGDQ---------Q--ALEHLQEYLGDRRGNFYLAYATGRSYHS-ARELQKQVGLME   59 (244)
T ss_dssp             SEEEEECTBTTTBSCH---------H--HHHHHHHHHHTTGGGEEEEEECSSCHHH-HHHHHHHHTCCC
T ss_pred             ceEEEEECcccCCCCC---------C--CHHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            3467889999999731         1  1233445556778899999999999888 589999988753

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=7.3e-09  Score=65.41  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             CCCCceEEEeCCCCcccccccc--cccCCCcc-cChhHHHHHHHHHHCCCeEEEEeCCC
Q 034147           19 ENLPRLVVFDLDYTLWPFYCEC--CYEDEIPY-LYPHAKGILEALKEKGIHVAVASRSP   74 (103)
Q Consensus        19 ~~~~~~~~fD~DGTL~~~~~~~--~~~~~~~~-~~~g~~~~l~~l~~~G~~v~i~T~~~   74 (103)
                      .+..++++||.||||+...+.-  -....... ++|++.+.|+.|+++|+.++|+||.+
T Consensus        18 ~~~~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~   76 (195)
T d1yj5a1          18 KPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQM   76 (195)
T ss_dssp             CCCSCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECH
T ss_pred             CCcCcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcc
Confidence            3456899999999998743210  01111222 47999999999999999999999864

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=4.9e-08  Score=64.92  Aligned_cols=44  Identities=16%  Similarity=0.168  Sum_probs=39.5

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ...+.||+.++++.|+++|++++|+||+-... ++..++++++..
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~-ie~vl~~lg~~~  176 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDV-LEEVIRQAGVYH  176 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHH-HHHHHHHTTCCB
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHH-HHHHHHHcCCCc
Confidence            35688999999999999999999999999877 699999999864

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=98.60  E-value=4.4e-08  Score=60.82  Aligned_cols=72  Identities=22%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             CCCceEEEeCCCCcccccccccccCCCcccC-hhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           20 NLPRLVVFDLDYTLWPFYCECCYEDEIPYLY-PHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        20 ~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~-~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      +++++++||+||||+++...+...++..+-| ..-...++.|++.|+.++++|+..... +....+.+++...+
T Consensus         3 ~~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F~~~Dg~gi~~l~~~gi~~~iis~~~~~~-v~~~~~~l~~~~~~   75 (177)
T d1k1ea_           3 ENIKFVITDVDGVLTDGQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI-LRRRIADLGIKLFF   75 (177)
T ss_dssp             GGCCEEEEECTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH-HHHHHHHHTCCEEE
T ss_pred             ccCeEEEEccCCcccCCeEEEeCCCCEEEEEECcchHHHHHHhhhcEEEEEecCCchhH-HHHHHhhhcccccc
Confidence            4689999999999999766655554433322 222347899999999999999999888 58888988876543

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=1.9e-07  Score=59.32  Aligned_cols=69  Identities=17%  Similarity=0.106  Sum_probs=49.6

Q ss_pred             CCceEEEeCCCCcccccccc---------------------c----ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCc
Q 034147           21 LPRLVVFDLDYTLWPFYCEC---------------------C----YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPA   75 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~---------------------~----~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~   75 (103)
                      .+.+|+||+|-|+++...+.                     .    .......+.||+.++++.++++|++++.+|||..
T Consensus        34 ~P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR~~  113 (209)
T d2b82a1          34 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  113 (209)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCCch
Confidence            45689999999999843220                     0    1123355788999999999999999999999873


Q ss_pred             ---hhHHHHHHH-HcCCCC
Q 034147           76 ---PDIAKTFLH-KLGIHS   90 (103)
Q Consensus        76 ---~~i~~~~l~-~~~l~~   90 (103)
                         .. +...++ .+|+..
T Consensus       114 ~~~e~-T~~nL~K~lG~p~  131 (209)
T d2b82a1         114 TKTET-VSKTLADNFHIPA  131 (209)
T ss_dssp             CSSCC-HHHHHHHHTTCCT
T ss_pred             hhHHH-HHHHHHHHcCCCc
Confidence               33 344454 488754

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.44  E-value=5.3e-07  Score=53.58  Aligned_cols=62  Identities=24%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           22 PRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        22 ~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      ..+++||.+|+++-+        -...+.|++.+.++.|++.|+++.++||..... +....+.+|++..+
T Consensus         3 ~~~~~~d~~~~~~~g--------~~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~-a~~ia~~lgI~~v~   64 (135)
T d2b8ea1           3 VTAVIFDKTGTLTKG--------KPDTLKESAKPAVQELKRMGIKVGMITGDNWRS-AEAISRELNLDLVI   64 (135)
T ss_dssp             CCEEEEECCCCCBCS--------CCCCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHHTCSEEE
T ss_pred             EEEEEECCceEEEEe--------cCCCCCccHHHHHHHHHHcCCEEEEEcCcchhh-hhHHHhhhhhhhhc
Confidence            457999999999853        124578999999999999999999999999887 79999999997655

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.6e-07  Score=55.43  Aligned_cols=70  Identities=23%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             CCceEEEeCCCCccccccccc--------------ccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHc
Q 034147           21 LPRLVVFDLDYTLWPFYCECC--------------YEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~--------------~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      ....+++|+|+||+.+...-.              .........||+.++|+.+.+. +.++|.|++.... |+..++.+
T Consensus        14 ~k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~Y-A~~il~~l   91 (181)
T d1ta0a_          14 DKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASLAKY-ADPVADLL   91 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSCCTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSCHHH-HHHHHHHH
T ss_pred             CCeEEEEeCCCCEEccccCCCCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCcHHH-HHHHHHHh
Confidence            356799999999996321100              0011234689999999999987 8999999999888 89999998


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      +-...+
T Consensus        92 dp~~~~   97 (181)
T d1ta0a_          92 DKWGAF   97 (181)
T ss_dssp             CSSCCE
T ss_pred             ccCCce
Confidence            765444

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.32  E-value=8.2e-08  Score=58.95  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             CCceEEEeCCCCcccccccccccCCCcccChhHHHHHHH-HHHCCCeEEEEeCCCchh
Q 034147           21 LPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEA-LKEKGIHVAVASRSPAPD   77 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~-l~~~G~~v~i~T~~~~~~   77 (103)
                      ++|+++||+||||++                .+   +++ +++.|++++++|+|+...
T Consensus         1 dmkli~fDlDGTLl~----------------e~---~~~~a~~~Gi~~~~~tgR~~~~   39 (206)
T d1rkua_           1 DMEIACLDLEGVLVP----------------EI---WIAFAEKTGIDALKATTRDIPD   39 (206)
T ss_dssp             CCEEEEEESBTTTBC----------------CH---HHHHHHHHTCGGGGCCTTTCCC
T ss_pred             CcEEEEEcCccchHH----------------HH---HHHHHHHcCCHHHHHHCCCCCC
Confidence            368999999999995                11   233 467899999999998644

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.07  E-value=7.8e-06  Score=49.97  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=50.0

Q ss_pred             eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCC
Q 034147           24 LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHS   90 (103)
Q Consensus        24 ~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~   90 (103)
                      ++++|.+||++-..        ..++.+++.+.++.|++.|+++.++||-.... +....+.+|+..
T Consensus         4 ~~~~d~~~~~~~~~--------~Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~t-A~~ia~~~Gi~~   61 (168)
T d1wpga2           4 VICSDKTGTLTTNQ--------LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGT-AIAICRRIGIFG   61 (168)
T ss_dssp             EEEECCTTTTBCCC--------ECCBCTTHHHHHHHHHHTTCEEEEECSSCHHH-HHHHHHHTTSSC
T ss_pred             EEEECCccEEEEEe--------cCCCchhHHHHHHHHHHCcCEEEEECCCCHHH-HHHHHHHcCCCC
Confidence            68899999998621        24578999999999999999999999999887 799999999854

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.4e-06  Score=52.20  Aligned_cols=30  Identities=10%  Similarity=-0.025  Sum_probs=24.3

Q ss_pred             CCcccChhHHHHHHHHHHCC-CeEEEEeCCC
Q 034147           45 EIPYLYPHAKGILEALKEKG-IHVAVASRSP   74 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G-~~v~i~T~~~   74 (103)
                      ....|+||+.+++++|++.| ..+.++|+++
T Consensus        71 ~~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~  101 (195)
T d1q92a_          71 FELEPLPGAVEAVKEMASLQNTDVFICTSPI  101 (195)
T ss_dssp             TTCCBCTTHHHHHHHHHHSTTEEEEEEECCC
T ss_pred             hhCCcccCHHHHHHHHhhccCccceEEcccc
Confidence            34578999999999999865 4678888765

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=97.30  E-value=0.00031  Score=48.85  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=42.3

Q ss_pred             CCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHH-c--------CCCCccccCeeeec
Q 034147           45 EIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHK-L--------GIHSMFVPMVRLSC  100 (103)
Q Consensus        45 ~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~-~--------~l~~~~~~~~i~~~  100 (103)
                      +.....|....+|++|++.|.++.++||++... +...+.. +        ++.++|  |.|++.
T Consensus       182 kYv~k~~~l~~~L~~lr~~GKklFLiTNS~~~y-~~~~m~y~~~~~~~~g~dWr~lF--DvVIv~  243 (458)
T d2bdea1         182 KYVIREKEVVEGLKHFIRYGKKIFILTNSEYSY-SKLLLDYALSPFLDKGEHWQGLF--EFVITL  243 (458)
T ss_dssp             TSEECCHHHHHHHHHHHTTTCEEEEECSSCHHH-HHHHHHHHHGGGSCTTCCGGGTE--EEEEES
T ss_pred             HhhcCChhHHHHHHHHHHcCCeEEEEecCcHHH-HHHHhhhhcccCCCCCCChHHhc--eEEEeC
Confidence            334456889999999999999999999999888 6877775 3        556678  777764

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00026  Score=43.15  Aligned_cols=16  Identities=19%  Similarity=0.276  Sum_probs=14.2

Q ss_pred             CCceEEEeCCCCcccc
Q 034147           21 LPRLVVFDLDYTLWPF   36 (103)
Q Consensus        21 ~~~~~~fD~DGTL~~~   36 (103)
                      ++++++||+||||++.
T Consensus         2 ~~~~~lfD~dGTl~d~   17 (225)
T d2g80a1           2 NYSTYLLDIEGTVCPI   17 (225)
T ss_dssp             CCSEEEECCBTTTBCT
T ss_pred             CCCEEEEcCCCCCccc
Confidence            5789999999999874

>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.38  E-value=0.071  Score=29.09  Aligned_cols=74  Identities=11%  Similarity=0.136  Sum_probs=49.4

Q ss_pred             HHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      ++..++...+.+..  ..++.+++|+.++=.-          ..........+.+.++++|.++.++.-+  +. +...+
T Consensus        25 a~~~~~~~~~~i~~--~~~~~vvlD~s~v~~i----------Dssgl~~L~~~~~~~~~~g~~l~l~~~~--~~-v~~~l   89 (111)
T d1h4xa_          25 VEQIRAKISTAIFQ--GAVTTIIWNFERLSFM----------DSSGVGLVLGRMRELEAVAGRTILLNPS--PT-MRKVF   89 (111)
T ss_dssp             HHHHHHHHHHHHHH--TSCSEEEEEEEEEEEE----------CTHHHHHHHHHHHHHHTTTCEEEEESCC--HH-HHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCcEEEEEEECCccc----------CchHHHHHHHHHHHHHHCCCEEEEecCC--HH-HHHHH
Confidence            44556666665543  3467799999887432          1112234567778899999999877543  44 48889


Q ss_pred             HHcCCCCcc
Q 034147           84 HKLGIHSMF   92 (103)
Q Consensus        84 ~~~~l~~~~   92 (103)
                      +..|+..++
T Consensus        90 ~~~gl~~~~   98 (111)
T d1h4xa_          90 QFSGLGPWM   98 (111)
T ss_dssp             HHTTCGGGE
T ss_pred             HHcCCCeEE
Confidence            999997765

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.15  E-value=0.1  Score=28.49  Aligned_cols=74  Identities=15%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             HHHhhHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHH
Q 034147            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFL   83 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l   83 (103)
                      ++..++...+.+..  +..+.+++|+-++-.-          ......-..++.+.++++|.++.++.-  .+. +...+
T Consensus        26 ~~~~~~~l~~~~~~--~~~~~iilDls~v~~i----------Dssg~~~L~~~~~~~~~~g~~l~l~~~--~~~-v~~~l   90 (115)
T d1th8b_          26 AEELREQVTDVLEN--RAIRHIVLNLGQLTFM----------DSSGLGVILGRYKQIKNVGGQMVVCAV--SPA-VKRLF   90 (115)
T ss_dssp             HHHHHHHHHHHHHS--SCCCEEEEEEEEEEEE----------CHHHHHHHHHHHHHHHHTTCCEEEESC--CHH-HHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEEECCCCC----------CHHHHHHHHHHHHHHHhCCCEEEEEEC--CHH-HHHHH
Confidence            34455555555543  3467899999885432          111223456677888999988876643  355 48889


Q ss_pred             HHcCCCCcc
Q 034147           84 HKLGIHSMF   92 (103)
Q Consensus        84 ~~~~l~~~~   92 (103)
                      +..|+...|
T Consensus        91 ~~~gl~~~~   99 (115)
T d1th8b_          91 DMSGLFKII   99 (115)
T ss_dssp             HHHTGGGTS
T ss_pred             HHcCCCcee
Confidence            999998776

>d1vc1a_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Thermotoga maritima [TaxId: 2336]

Probab=94.00  E-value=0.19  Score=27.04  Aligned_cols=73  Identities=16%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             HHHhhHHHHHHhhccCCCCceEEEeCCCCc-ccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHH
Q 034147            4 LEKVKNEALEIIGQFENLPRLVVFDLDYTL-WPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTF   82 (103)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~fD~DGTL-~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~   82 (103)
                      ++..++...+.+..  ...+.+++|+.++= +|           .....-..++.+.++++|.++.++. -+ +. +...
T Consensus        28 ~~~~~~~l~~~~~~--~~~~~vvid~~~v~~iD-----------ssg~~~l~~~~~~~~~~~~~l~l~~-~~-~~-v~~~   91 (110)
T d1vc1a_          28 SSELKEQLRNFIST--TSKKKIVLDLSSVSYMD-----------SAGLGTLVVILKDAKINGKEFILSS-LK-ES-ISRI   91 (110)
T ss_dssp             HHHHHHHHHHHHHH--CCCSEEEEEEEECCCBC-----------HHHHHHHHHHHHHHHHTTCEEEEES-CC-HH-HHHH
T ss_pred             HHHHHHHHHHHHhc--CCCCEEEEEEECCCccC-----------HHHHHHHHHHHHHHHhCCCEEEEEe-CC-HH-HHHH
Confidence            44556666655543  24577999998853 33           1122335567788899999887664 33 55 4889


Q ss_pred             HHHcCCCCcc
Q 034147           83 LHKLGIHSMF   92 (103)
Q Consensus        83 l~~~~l~~~~   92 (103)
                      ++..|+...+
T Consensus        92 l~~~gl~~~~  101 (110)
T d1vc1a_          92 LKLTHLDKIF  101 (110)
T ss_dssp             HHHHTGGGTS
T ss_pred             HHHcCCCcee
Confidence            9999998766

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=92.26  E-value=0.51  Score=26.76  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=28.1

Q ss_pred             HHHHHHHHHC----CCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           54 KGILEALKEK----GIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        54 ~~~l~~l~~~----G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .++++++++.    +++++++|+...... .....+.|..+|+
T Consensus        72 ~el~~~ir~~~~~~~iPvi~lT~~~~~~~-~~~a~~~Ga~~yl  113 (144)
T d1i3ca_          72 REVLAEIKQNPDLKRIPVVVLTTSHNEDD-VIASYELHVNCYL  113 (144)
T ss_dssp             HHHHHHHHHCTTTTTSCEEEEESCCCHHH-HHHHHHTTCSEEE
T ss_pred             hHHHHHHHhCcccCCCeEEEEECCCCHHH-HHHHHHCCCCEEE
Confidence            5677888763    578999998887763 5566678887765

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=92.05  E-value=0.49  Score=27.00  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             HHHHHHHHHC----CCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           54 KGILEALKEK----GIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        54 ~~~l~~l~~~----G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .++++++|+.    .++++++|+...... .....+.|..+|+
T Consensus        78 ~el~~~ir~~~~~~~ipiI~lT~~~~~~~-~~~~~~~Ga~~~l  119 (149)
T d1k66a_          78 REVLQEIKQDEVLKKIPVVIMTTSSNPKD-IEICYSYSISSYI  119 (149)
T ss_dssp             HHHHHHHTTSTTGGGSCEEEEESCCCHHH-HHHHHHTTCSEEE
T ss_pred             HHHHHHHHhccccCCCeEEEEeCCCCHHH-HHHHHHCCCCEEE
Confidence            6788888753    588999998887763 5666778887765

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=91.33  E-value=0.66  Score=26.13  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=27.2

Q ss_pred             HHHHHHHHHC----CCeEEEEeCCCchhHHHHHHHHcCCCCcc
Q 034147           54 KGILEALKEK----GIHVAVASRSPAPDIAKTFLHKLGIHSMF   92 (103)
Q Consensus        54 ~~~l~~l~~~----G~~v~i~T~~~~~~i~~~~l~~~~l~~~~   92 (103)
                      .++++++++.    ++|++++|+...... ....-+.|..+|+
T Consensus        71 ~el~~~ir~~~~~~~iPvI~ls~~~~~~~-~~~a~~~Ga~~yl  112 (140)
T d1k68a_          71 REVLAEIKSDPTLKRIPVVVLSTSINEDD-IFHSYDLHVNCYI  112 (140)
T ss_dssp             HHHHHHHHHSTTGGGSCEEEEESCCCHHH-HHHHHHTTCSEEE
T ss_pred             hHHHHHHHhCcccCCCcEEEEeCCCCHHH-HHHHHHCCCCEEE
Confidence            6788888764    478999998876663 5555567877664

>d1jx7a_ c.114.1.1 (A:) Hypothetical protein YchN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: DsrEFH-like
superfamily: DsrEFH-like
family: DsrEF-like
domain: Hypothetical protein YchN
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.26  Score=27.04  Aligned_cols=44  Identities=14%  Similarity=0.073  Sum_probs=31.5

Q ss_pred             Cc-eEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEe
Q 034147           22 PR-LVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVAS   71 (103)
Q Consensus        22 ~~-~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T   71 (103)
                      .+ .++|.-||+.+-.      ......-.+...+.++.+.+.|+++.+|.
T Consensus        35 ~eV~vff~~dgV~~~~------~~~~~~~~~~~~~~l~~l~~~gv~v~vC~   79 (117)
T d1jx7a_          35 LDLRLFLMSDAVTAGL------RGQKPGEGYNIQQMLEILTAQNVPVKLCK   79 (117)
T ss_dssp             CEEEEEECGGGGGGGB------SCCCCSSSCCHHHHHHHHHHTTCCEEEEH
T ss_pred             CcEEEEEecchHHHhh------ccCCccccccHHHHHHHHHHCCCEEEEEH
Confidence            44 4888999999852      11112233568899999999999988774

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.07  E-value=1.5  Score=27.86  Aligned_cols=62  Identities=21%  Similarity=0.224  Sum_probs=45.4

Q ss_pred             ceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccccCe
Q 034147           23 RLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFVPMV   96 (103)
Q Consensus        23 ~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~~~~   96 (103)
                      |.+++=+-|-++..          ......+.+=+..|++.|++++|+.|+. +.+ ...++++++...+....
T Consensus        27 ktiVIKlGG~~l~~----------~~~~~~~~~dIa~L~~~G~~vViVhGgg-~~i-~~~l~~~gi~~~~~~g~   88 (300)
T d2bufa1          27 KTLVIKYGGNAMES----------EELKAGFARDVVLMKAVGINPVVVHGGG-PQI-GDLLKRLSIESHFIDGM   88 (300)
T ss_dssp             CEEEEEECCTTTTS----------SHHHHHHHHHHHHHHHTTCEEEEEECCC-HHH-HHHHHHTTCCCCBSSSS
T ss_pred             CEEEEEEChHHhCC----------hhHHHHHHHHHHHHHHcCCcEEEecChH-HHH-HHHHHhcccCceecCCc
Confidence            66888888877751          1223455666778999999999999988 453 88899999887664433

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.88  E-value=0.63  Score=29.47  Aligned_cols=68  Identities=22%  Similarity=0.239  Sum_probs=47.4

Q ss_pred             HhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCCCccc
Q 034147           14 IIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIHSMFV   93 (103)
Q Consensus        14 ~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~~~~~   93 (103)
                      ++++..  -+.++.=+.|.++..          ....+...+-+..|++.|++++|++|.. .. ....+..+++...+.
T Consensus        19 Yi~~~r--~ktiVIKlGGsvl~~----------~~~~~~l~~dia~L~~~G~~vVlVhGg~-~~-i~~~l~~~~~~~~~~   84 (291)
T d2ap9a1          19 WLKQLH--GKVVVVKYGGNAMTD----------DTLRRAFAADMAFLRNCGIHPVVVHGGG-PQ-ITAMLRRLGIEGDFK   84 (291)
T ss_dssp             HHHHHT--TCEEEEEECTHHHHS----------HHHHHHHHHHHHHHHTTTCEEEEEECCS-HH-HHHHHHHHTCCCCCS
T ss_pred             HHHHhC--CCEEEEEECcHHhcC----------HHHHHHHHHHHHHHHHCCCEEEEEeCCc-cc-cchhHHHcCCCcccc
Confidence            444442  366888888988751          1123445666888999999999999888 45 388899998876554


Q ss_pred             cC
Q 034147           94 PM   95 (103)
Q Consensus        94 ~~   95 (103)
                      ..
T Consensus        85 ~~   86 (291)
T d2ap9a1          85 GG   86 (291)
T ss_dssp             SS
T ss_pred             cc
Confidence            33

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=88.41  E-value=1.1  Score=24.63  Aligned_cols=64  Identities=20%  Similarity=0.360  Sum_probs=41.6

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH----CCCeEEEEeCCCchhHHHHHHH
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE----KGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~----~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +++++.+..  ..+++++.|+.  + +             -.. -.++++++++    .+.+++++|+..... ......
T Consensus        41 ~~al~~l~~--~~~dlii~D~~--m-P-------------~~~-G~el~~~lr~~~~~~~~pii~lt~~~~~~-~~~~a~  100 (129)
T d1p6qa_          41 EQGMKIMAQ--NPHHLVISDFN--M-P-------------KMD-GLGLLQAVRANPATKKAAFIILTAQGDRA-LVQKAA  100 (129)
T ss_dssp             HHHHHHHHT--SCCSEEEECSS--S-C-------------SSC-HHHHHHHHTTCTTSTTCEEEECCSCCCHH-HHHHHH
T ss_pred             HHHHHHHHh--CCCCeEEeeee--c-C-------------CCC-hHHHHHHHHhCcccCCCeEEEEEecCCHH-HHHHHH
Confidence            355666654  34788887763  1 1             112 3677888875    357889999887666 355667


Q ss_pred             HcCCCCcc
Q 034147           85 KLGIHSMF   92 (103)
Q Consensus        85 ~~~l~~~~   92 (103)
                      ..|..+|+
T Consensus       101 ~~G~~~~l  108 (129)
T d1p6qa_         101 ALGANNVL  108 (129)
T ss_dssp             HHTCSCEE
T ss_pred             HCCCCEEE
Confidence            78887765

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.37  E-value=1.2  Score=24.81  Aligned_cols=64  Identities=22%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +++++.+..  ..+++++.|+.   .+             -..| .++++++++.  ..+++++|+...... ....-+.
T Consensus        34 ~eAl~~l~~--~~~dlvilD~~---mp-------------~~~G-~e~~~~lr~~~~~~piI~lT~~~~~~~-~~~a~~~   93 (137)
T d1ny5a1          34 KEAYKLLSE--KHFNVVLLDLL---LP-------------DVNG-LEILKWIKERSPETEVIVITGHGTIKT-AVEAMKM   93 (137)
T ss_dssp             HHHHHHHHH--SCCSEEEEESB---CS-------------SSBH-HHHHHHHHHHCTTSEEEEEEETTCHHH-HHHHHTT
T ss_pred             HHHHHHhhc--cccccchHHHh---hh-------------hhhH-HHHHHHHHHhCCCCCEEEEECCCCHHH-HHHHHHc
Confidence            455555554  35888888852   11             1134 5777777764  499999998876553 4444456


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |..+|+
T Consensus        94 Ga~dyl   99 (137)
T d1ny5a1          94 GAYDFL   99 (137)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            766654

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.01  E-value=1.1  Score=28.13  Aligned_cols=70  Identities=21%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      +++-+++....  |.++.=+.|.++..          ...++...+-+..|++.|++++|+.|.. .. ....+.++++.
T Consensus        11 ~~~pyi~~~r~--k~iVIKlGgsvi~~----------~~~~~~l~~dIa~L~~~G~~iVlVhGg~-~~-~~~~l~~~~i~   76 (282)
T d2btya1          11 EALPYIKEFYG--KTFVIKFGGSAMKQ----------ENAKKAFIQDIILLKYTGIKPIIVHGGG-PA-ISQMMKDLGIE   76 (282)
T ss_dssp             HHHHHHHHHTT--CEEEEEECSHHHHS----------HHHHHHHHHHHHHHHHTTCEEEEEECCS-HH-HHHHHHHHTCC
T ss_pred             HHHHHHHHhCC--CEEEEEECchHhCC----------hhHHHHHHHHHHHHHHCCCeEEEEECCC-cc-chhhHHHcCCc
Confidence            44445555443  56888888987751          1234556677788999999999999888 45 37888999887


Q ss_pred             Cccc
Q 034147           90 SMFV   93 (103)
Q Consensus        90 ~~~~   93 (103)
                      ..+.
T Consensus        77 ~~~~   80 (282)
T d2btya1          77 PVFK   80 (282)
T ss_dssp             CCBS
T ss_pred             ceec
Confidence            6553

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.85  E-value=1.6  Score=23.70  Aligned_cols=64  Identities=14%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH-CCCeEEEEeCCCchhHHHHHHHHcC
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE-KGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~-~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      +++++.+..  ..+++++.|+.--  +              ..| .++++.+++ .+.+++++|+..... .....-+.|
T Consensus        36 ~~al~~l~~--~~~dlii~D~~mp--~--------------~~G-~~~~~~~r~~~~~pii~lt~~~~~~-~~~~a~~~G   95 (121)
T d1xhfa1          36 AEMHQILSE--YDINLVIMDINLP--G--------------KNG-LLLARELREQANVALMFLTGRDNEV-DKILGLEIG   95 (121)
T ss_dssp             HHHHHHHHH--SCCSEEEECSSCS--S--------------SCH-HHHHHHHHHHCCCEEEEEESCCSHH-HHHHHHHHT
T ss_pred             HHHHHHHHh--cCCCEEEeecccC--C--------------ccC-cHHHHHHHhcCCCcEEEEECCCCHH-HHHHHHHcC
Confidence            455555554  3588999997421  1              123 456666655 469999999988766 355566778


Q ss_pred             CCCcc
Q 034147           88 IHSMF   92 (103)
Q Consensus        88 l~~~~   92 (103)
                      ..+|+
T Consensus        96 a~dyl  100 (121)
T d1xhfa1          96 ADDYI  100 (121)
T ss_dssp             CSEEE
T ss_pred             CCEEE
Confidence            77765

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.19  E-value=1.9  Score=23.85  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH--CCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~--~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      ++++++..  ..+++++.|+.   .+             -..| .++++++++  ...+++++|+...... ....-..|
T Consensus        43 ea~~~~~~--~~~dlillD~~---mP-------------~~dG-~el~~~ir~~~~~~pii~lt~~~~~~~-~~~~~~~G  102 (133)
T d2ayxa1          43 DALNVLSK--NHIDIVLSDVN---MP-------------NMDG-YRLTQRIRQLGLTLPVIGVTANALAEE-KQRCLESG  102 (133)
T ss_dssp             HHHHHHHH--SCCSEEEEEES---SC-------------SSCC-HHHHHHHHHHHCCSCEEEEESSTTSHH-HHHHHHCC
T ss_pred             HHHHHHhc--cCceEEEEecc---CC-------------CCCH-HHHHHHHHHhCCCCCEEEEeccCCHHH-HHHHHHcC
Confidence            44555543  35788888862   11             1123 345555544  3589999998876663 55556678


Q ss_pred             CCCcc
Q 034147           88 IHSMF   92 (103)
Q Consensus        88 l~~~~   92 (103)
                      ..+|+
T Consensus       103 ~~~~l  107 (133)
T d2ayxa1         103 MDSCL  107 (133)
T ss_dssp             CEEEE
T ss_pred             CCEEE
Confidence            77654

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.89  E-value=2.1  Score=23.27  Aligned_cols=64  Identities=17%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHC--CCeEEEEeCCCchhHHHHHHHHc
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEK--GIHVAVASRSPAPDIAKTFLHKL   86 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~--G~~v~i~T~~~~~~i~~~~l~~~   86 (103)
                      +++++.+..  ..+++++.|+.   .+             -..| .++++++++.  ..+++++|+...... ....-+.
T Consensus        37 ~~a~~~l~~--~~~dlii~D~~---mp-------------~~~G-~el~~~l~~~~~~~piI~~t~~~~~~~-~~~a~~~   96 (123)
T d1krwa_          37 NEVLAALAS--KTPDVLLSDIR---MP-------------GMDG-LALLKQIKQRHPMLPVIIMTAHSDLDA-AVSAYQQ   96 (123)
T ss_dssp             HHHHHHHTT--CCCSEEEECCS---SS-------------SSTT-HHHHHHHHHHSSSCCEEESCCCSCHHH-HHHHHHH
T ss_pred             HHHHHHHHh--CCCCEEEehhh---cC-------------CchH-HHHHHHHHHhCCCCeEEEEecCCCHHH-HHHHHHc
Confidence            345555544  35788888863   11             1123 4566666553  489999998887663 4455566


Q ss_pred             CCCCcc
Q 034147           87 GIHSMF   92 (103)
Q Consensus        87 ~l~~~~   92 (103)
                      |..+|+
T Consensus        97 Ga~dyl  102 (123)
T d1krwa_          97 GAFDYL  102 (123)
T ss_dssp             TEEEEC
T ss_pred             CCCeEE
Confidence            766554

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=83.63  E-value=2.3  Score=23.65  Aligned_cols=63  Identities=11%  Similarity=0.154  Sum_probs=37.2

Q ss_pred             HHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH--CCCeEEEEeCCCchhHHHHHHHHcC
Q 034147           10 EALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE--KGIHVAVASRSPAPDIAKTFLHKLG   87 (103)
Q Consensus        10 ~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~--~G~~v~i~T~~~~~~i~~~~l~~~~   87 (103)
                      ++++.+..  ..+++++.|+-   .+             -..| .++++++++  ...+++++|+...... ....-+.|
T Consensus        35 ~al~~l~~--~~~dlil~D~~---mP-------------~~~G-~el~~~lr~~~~~~pvI~lT~~~~~~~-~~~a~~~G   94 (140)
T d1qkka_          35 EALAGLSA--DFAGIVISDIR---MP-------------GMDG-LALFRKILALDPDLPMILVTGHGDIPM-AVQAIQDG   94 (140)
T ss_dssp             HHHHTCCT--TCCSEEEEESC---CS-------------SSCH-HHHHHHHHHHCTTSCEEEEECGGGHHH-HHHHHHTT
T ss_pred             HHHHHHhc--cCcchHHHhhc---cC-------------CCCH-HHHHHHHHHhCCCCcEEEEECCCCHHH-HHHHHHcC
Confidence            34444433  35788888863   11             1123 456666665  3599999999886553 33344567


Q ss_pred             CCCcc
Q 034147           88 IHSMF   92 (103)
Q Consensus        88 l~~~~   92 (103)
                      ..+|+
T Consensus        95 a~dyl   99 (140)
T d1qkka_          95 AYDFI   99 (140)
T ss_dssp             CCEEE
T ss_pred             CCEee
Confidence            66654

>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: AF1437-like
domain: Hypothetical protein AF1437
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.63  E-value=0.77  Score=29.33  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=36.3

Q ss_pred             CcccChhHHHHHHHHHHCCCeEEEEeCCCchhHHHHHHHHcCCC
Q 034147           46 IPYLYPHAKGILEALKEKGIHVAVASRSPAPDIAKTFLHKLGIH   89 (103)
Q Consensus        46 ~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~~i~~~~l~~~~l~   89 (103)
                      ..++.||+.+.++.+++. .+..|+|.+..+. .+....+.|++
T Consensus        79 ~~~lvpgA~~~lk~l~~~-m~~yIvSTSY~qy-i~al~~~~gfp  120 (308)
T d1y8aa1          79 SAKFVPDAEKAMATLQER-WTPVVISTSYTQY-LRRTASMIGVR  120 (308)
T ss_dssp             HCCBCTTHHHHHHHHHTT-CEEEEEEEEEHHH-HHHHHHHTTCC
T ss_pred             ceeecCCHHHHHHHHHhh-CCcEEEeccHHHH-HHHHHhhcCCC
Confidence            456789999999999998 7888899888888 49999999984

>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein TM0844
species: Thermotoga maritima [TaxId: 2336]

Probab=80.30  E-value=2.2  Score=24.25  Aligned_cols=55  Identities=15%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             hHHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHHCCCeEEEEeCCCch
Q 034147            8 KNEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKEKGIHVAVASRSPAP   76 (103)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~G~~v~i~T~~~~~   76 (103)
                      +.++..+++...+.-.++++|-.|.-+++              ++..+.++.++..|-.++++=|++..
T Consensus        50 ~~E~~~il~~i~~~~~~I~LDe~Gk~~sS--------------~~fA~~l~~~~~~g~~i~FiIGGa~G  104 (147)
T d1o6da_          50 RKETEDLTNRILPGSFVMVMDKRGEEVSS--------------EEFADFLKDLEMKGKDITILIGGPYG  104 (147)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEEEEEEECCH--------------HHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             HHHHHHHhccCCCCCEEEEEecccCCcCC--------------HHHHHHHHHHHhcCCCCEEEEECCCC
Confidence            34455566766666678999999998863              56778888888777777777776643

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=3  Score=22.48  Aligned_cols=64  Identities=16%  Similarity=0.239  Sum_probs=40.2

Q ss_pred             HHHHHHhhccCCCCceEEEeCCCCcccccccccccCCCcccChhHHHHHHHHHH----CCCeEEEEeCCCchhHHHHHHH
Q 034147            9 NEALEIIGQFENLPRLVVFDLDYTLWPFYCECCYEDEIPYLYPHAKGILEALKE----KGIHVAVASRSPAPDIAKTFLH   84 (103)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~l~~l~~----~G~~v~i~T~~~~~~i~~~~l~   84 (103)
                      +++++.+..  ..+++++.|+.   .+             -..| .++++++++    ..++++++|+.+... .....-
T Consensus        34 ~~al~~l~~--~~~dlil~D~~---mp-------------~~~G-~~l~~~lr~~~~~~~~pvi~lt~~~~~~-~~~~~~   93 (121)
T d1zesa1          34 DSAVNQLNE--PWPDLILLDWM---LP-------------GGSG-IQFIKHLKRESMTRDIPVVMLTARGEEE-DRVRGL   93 (121)
T ss_dssp             HHHHHHSSS--SCCSEEEECSS---CT-------------TSCH-HHHHHHHHHSTTTTTSCEEEEESCCSHH-HHHHHH
T ss_pred             HHHHHHHHc--cCCCEEEeecC---CC-------------CCCH-HHHHHHHHhCccCCCCeEEEEECCCCHH-HHHHHH
Confidence            345555543  35788888863   11             0123 567777765    348999999888666 355556


Q ss_pred             HcCCCCcc
Q 034147           85 KLGIHSMF   92 (103)
Q Consensus        85 ~~~l~~~~   92 (103)
                      +.|..+|+
T Consensus        94 ~~G~~d~l  101 (121)
T d1zesa1          94 ETGADDYI  101 (121)
T ss_dssp             HHTCSEEE
T ss_pred             HCCCCEEE
Confidence            77877665