Citrus Sinensis ID: 034200

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEEcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccEEEccccEEEEEEEEcccccccccccccHHHcEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpscirlvppssvsitihakpgskscsitdvsdeavgvqidapakdgEANAALLEYMSSVSLNLLFLFSFSNLL
Flexible Loop (DISEMBL)
mapakkgkskaksagstqskiktndenlpsciRLVPPSSVSITihakpgskscsiTDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Low Complexity Region (SEG)
MAPakkgkskaksagsTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMssvslnllflfsfsnll
Disordered region (IsUnstruct)
*******************************IRL*******I*******************AVGVQID******EANAALLEYMSSVSLNLLFLFSF****
Disordered Region (DISOPRED)
*********************************LVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Disordered Region (DISEMBL)
**********************TNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Disordered Region (DISPRO)
**************************NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFLFSFSNLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9CRC3	126	UPF0235 protein C15orf40	yes	no	0.762	0.611	0.469	6e-10
Q3ZBP8	126	UPF0235 protein C15orf40	yes	no	0.772	0.619	0.475	7e-10
Q505I4	126	UPF0235 protein C15orf40	no	no	0.792	0.634	0.437	1e-09
Q8WUR7	126	UPF0235 protein C15orf40	no	no	0.752	0.603	0.456	2e-09
A1KB74	98	UPF0235 protein azo3464 O	yes	no	0.534	0.551	0.314	0.0006

>sp|Q9CRC3|CO040_MOUSE UPF0235 protein C15orf40 homolog OS=Mus musculus PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 48/83 (57%), Gaps = 6/83 (7%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSCIRLV---PPSSVSITIHAKPGSKSCSITDVSDEAVG 64
          K+ A S G  Q+K     E  P     V   P   V+I IHAKPGS+  ++TD+S EAVG
Sbjct: 4  KAGATSKGKNQTK---EPETAPPAAGPVATDPKGFVTIAIHAKPGSRQNAVTDLSTEAVG 60

Query: 65 VQIDAPAKDGEANAALLEYMSSV 87
          V I AP  +GEANA L  Y+S V
Sbjct: 61 VAIAAPPSEGEANAELCRYLSKV 83

Mus musculus (taxid: 10090)

>sp|Q3ZBP8|CO040_BOVIN UPF0235 protein C15orf40 homolog OS=Bos taurus PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGV 65
          K  A + G  QSK    +  LP    + + P   VSI IHAKPGSK  ++TDV+ EAV V
Sbjct: 4  KCGATNKGKNQSK--EPERPLPPLGPVTVDPKGGVSIAIHAKPGSKQNAVTDVTTEAVSV 61

Query: 66 QIDAPAKDGEANAALLEYMSSV 87
           I AP  +GEANA L  Y+S V
Sbjct: 62 AIAAPPTEGEANAELCRYLSKV 83

Bos taurus (taxid: 9913)

>sp|Q505I4|CO040_RAT UPF0235 protein C15orf40 homolog OS=Rattus norvegicus PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 45/80 (56%)

Query: 8  KSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQI 67
          K+ A S G  Q+K           +       V+I IHAKPGSK  ++TD++ EAVGV I
Sbjct: 4  KAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAI 63

Query: 68 DAPAKDGEANAALLEYMSSV 87
           AP  +GEANA L  Y+S V
Sbjct: 64 AAPPSEGEANAELCRYLSKV 83

Rattus norvegicus (taxid: 10116)

>sp|Q8WUR7|CO040_HUMAN UPF0235 protein C15orf40 OS=Homo sapiens GN=C15orf40 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 5/81 (6%)

Query: 12 KSAGST---QSKIKTNDENLPSC--IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQ 66
          K AG+T   +S+ K  +  LP    + + P   V+I IHAKPGSK  ++TD++ EAV V 
Sbjct: 3  KKAGATTKGKSQSKEPERPLPPLGPVAVDPKGCVTIAIHAKPGSKQNAVTDLTAEAVNVA 62

Query: 67 IDAPAKDGEANAALLEYMSSV 87
          I AP  +GEANA L  Y+S V
Sbjct: 63 IAAPPSEGEANAELCRYLSKV 83

Homo sapiens (taxid: 9606)

>sp|A1KB74|Y3464_AZOSB UPF0235 protein azo3464 OS=Azoarcus sp. (strain BH72) GN=azo3464 PE=3 SV=1

 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 34/54 (62%)

Query: 32 IRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          +R     S+++T+H +PG++      +  EA+ +++ AP  DG+ANAAL  +++
Sbjct: 5  VREAADGSLTLTLHIQPGARQTGFAGLHGEAMKIRLAAPPVDGKANAALCAFLA 58

Azoarcus sp. (strain BH72) (taxid: 62928)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
225431557	128	PREDICTED: UPF0235 protein C15orf40 homo	0.851	0.671	0.758	8e-29
7770327	91	F27J15.6 [Arabidopsis thaliana]	0.881	0.978	0.712	3e-27
30694498	126	uncharacterized protein [Arabidopsis tha	0.831	0.666	0.735	8e-27
351726281	126	uncharacterized protein LOC100527290 [Gl	0.831	0.666	0.735	1e-26
351722711	126	uncharacterized protein LOC100499954 [Gl	0.831	0.666	0.735	2e-26
449467753	156	PREDICTED: UPF0235 protein C15orf40 homo	0.841	0.544	0.727	1e-25
297852564	126	hypothetical protein ARALYDRAFT_474060 [	0.831	0.666	0.712	4e-25
224131202	131	predicted protein [Populus trichocarpa]	0.712	0.549	0.797	1e-23
357464555	125	hypothetical protein MTR_3g095670 [Medic	0.603	0.488	0.868	2e-23
226496211	129	LOC100284194 [Zea mays] gi|195640232|gb|	0.861	0.674	0.574	2e-22

>gi|225431557|ref|XP_002282176.1| PREDICTED: UPF0235 protein C15orf40 homolog [Vitis vinifera] gi|147866968|emb|CAN83055.1| hypothetical protein VITISV_009894 [Vitis vinifera]

 Score =  130 bits (328), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/87 (75%), Positives = 73/87 (83%), Gaps = 1/87 (1%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP+KKGK+KA S GSTQS    N  + PSCIR VPPSSVSIT+HAKPGSK  SITD  D
Sbjct: 1  MAPSKKGKAKANSGGSTQSSDSVN-SSFPSCIRFVPPSSVSITVHAKPGSKVSSITDFDD 59

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EA+GVQIDAPAKDGEANAALL+Y+SSV
Sbjct: 60 EALGVQIDAPAKDGEANAALLDYISSV 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7770327|gb|AAF69697.1|AC016041_2 F27J15.6 [Arabidopsis thaliana]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 75/94 (79%), Gaps = 5/94 (5%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFL 94
          EAVGVQIDAPA+DGEANAALLEYMSSV    LFL
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSV--KFLFL 89

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694498|ref|NP_175343.2| uncharacterized protein [Arabidopsis thaliana] gi|34365605|gb|AAQ65114.1| At1g49170 [Arabidopsis thaliana] gi|51971533|dbj|BAD44431.1| similar to serine/threonine kinase 9 gb|AAD28798.1 [Arabidopsis thaliana] gi|332194278|gb|AEE32399.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 72/87 (82%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EAVGVQIDAPA+DGEANAALLEYMSSV
Sbjct: 58 EAVGVQIDAPARDGEANAALLEYMSSV 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726281|ref|NP_001237633.1| uncharacterized protein LOC100527290 [Glycine max] gi|255632017|gb|ACU16361.1| unknown [Glycine max]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 75/87 (86%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+   +T S+ K ND   PSCIR VPPSSV+ITIHAKPGSKS S+TD+SD
Sbjct: 1  MPPAKRGKAKAEPKVTTPSE-KPND--FPSCIRSVPPSSVAITIHAKPGSKSASVTDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EAVGVQIDAPA+DGEANAALL+Y+SSV
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSV 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722711|ref|NP_001238533.1| uncharacterized protein LOC100499954 [Glycine max] gi|255627953|gb|ACU14321.1| unknown [Glycine max]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 76/87 (87%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          M PAK+GK+KA+S  +T S+ K ND   PSCI+ VPPSSV+ITIHAKPG+KS SITD+SD
Sbjct: 1  MPPAKRGKAKAESKVTTPSE-KPND--FPSCIQSVPPSSVAITIHAKPGAKSASITDISD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EAVGVQIDAPA+DGEANAALL+Y+SSV
Sbjct: 58 EAVGVQIDAPARDGEANAALLDYISSV 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467753|ref|XP_004151587.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus] gi|449513315|ref|XP_004164293.1| PREDICTED: UPF0235 protein C15orf40 homolog [Cucumis sativus]

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/88 (72%), Positives = 73/88 (82%), Gaps = 3/88 (3%)

Query: 1   MAPAKKGKSKA-KSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVS 59
           M PAKKGK+KA K+  S QS +K+N  N PSC+R V PSSV+ITIHAKPGSK  SITD  
Sbjct: 29  MPPAKKGKTKAPKATESIQSSVKSN--NYPSCLRSVSPSSVAITIHAKPGSKIASITDFG 86

Query: 60  DEAVGVQIDAPAKDGEANAALLEYMSSV 87
           D+A+GVQIDAPAKDGEANAALL+YMSSV
Sbjct: 87  DDALGVQIDAPAKDGEANAALLDYMSSV 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852564|ref|XP_002894163.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata] gi|297340005|gb|EFH70422.1| hypothetical protein ARALYDRAFT_474060 [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 71/87 (81%), Gaps = 3/87 (3%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP KKGK K KSA   +S   T     P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSD
Sbjct: 1  MAPTKKGK-KTKSAA--ESTTVTESSIFPACLRLLTPSSVAITIHAKPGSKAASITDVSD 57

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EAVGVQIDAPA+DGEANAALLE++SSV
Sbjct: 58 EAVGVQIDAPARDGEANAALLEFISSV 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131202|ref|XP_002328480.1| predicted protein [Populus trichocarpa] gi|222838195|gb|EEE76560.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 64/74 (86%), Gaps = 2/74 (2%)

Query: 16 STQSK--IKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKD 73
          STQSK    +   N PSCIR VPPSSV+ITIHAKPGSKS SITD+SDEAVGVQIDAPAKD
Sbjct: 16 STQSKPTAPSPQNNFPSCIRAVPPSSVAITIHAKPGSKSASITDLSDEAVGVQIDAPAKD 75

Query: 74 GEANAALLEYMSSV 87
          GEANAALL+Y+SSV
Sbjct: 76 GEANAALLDYISSV 89

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464555|ref|XP_003602559.1| hypothetical protein MTR_3g095670 [Medicago truncatula] gi|355491607|gb|AES72810.1| hypothetical protein MTR_3g095670 [Medicago truncatula]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 59/61 (96%)

Query: 27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSS 86
          N+PSCIR +PPSSV+ITIHAKPGSKS SITDVSDEAVGVQIDAPA+DGEANAALL+Y+SS
Sbjct: 24 NIPSCIRCMPPSSVAITIHAKPGSKSASITDVSDEAVGVQIDAPARDGEANAALLDYISS 83

Query: 87 V 87
          V
Sbjct: 84 V 84

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496211|ref|NP_001150562.1| LOC100284194 [Zea mays] gi|195640232|gb|ACG39584.1| uncharacterized ACR, YggU family COG1872 containing protein [Zea mays]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 66/87 (75%)

Query: 1  MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSD 60
          MAP K+GK+K  +         T     P C+RL+PPS+V+I+IHAKPGSK  +IT++ D
Sbjct: 1  MAPGKRGKAKGAAPPPPTXAASTGAVGFPGCLRLMPPSTVAISIHAKPGSKVATITEIGD 60

Query: 61 EAVGVQIDAPAKDGEANAALLEYMSSV 87
          EAVGVQIDAPA+DGEANAAL++++SSV
Sbjct: 61 EAVGVQIDAPARDGEANAALVDFISSV 87

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2028511	126	AT1G49170 "AT1G49170" [Arabido	0.663	0.531	0.746	4.3e-22
MGI|MGI:1914540	126	3110040N11Rik "RIKEN cDNA 3110	0.485	0.388	0.571	8.4e-10
TAIR|locus:2167361	232	AT5G63440 "AT5G63440" [Arabido	0.623	0.271	0.369	0.00025

TAIR|locus:2028511 AT1G49170 "AT1G49170" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/67 (74%), Positives = 58/67 (86%)

Query:    18 QSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEAN 77
             +S   T   + P+C+RL+ PSSV+ITIHAKPGSK+ SITDVSDEAVGVQIDAPA+DGEAN
Sbjct:    15 ESTTVTESSSFPTCLRLLTPSSVAITIHAKPGSKAASITDVSDEAVGVQIDAPARDGEAN 74

Query:    78 AALLEYM 84
             AALLEYM
Sbjct:    75 AALLEYM 81

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1914540 3110040N11Rik "RIKEN cDNA 3110040N11 gene" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/49 (57%), Positives = 35/49 (71%)

Query:    36 PPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYM 84
             P   V+I IHAKPGS+  ++TD+S EAVGV I AP  +GEANA L  Y+
Sbjct:    32 PKGFVTIAIHAKPGSRQNAVTDLSTEAVGVAIAAPPSEGEANAELCRYL 80

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167361 AT5G63440 "AT5G63440" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00025, P = 0.00025
 Identities = 24/65 (36%), Positives = 36/65 (55%)

Query:    22 KTN--DENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAA 79
             +TN  D  +P CI  +    V + I  +  ++  +IT V+ + V V + APA  GEAN  
Sbjct:   124 ETNPQDAPVPPCISQLDGGLVQVAIEVEDRAQRSAITRVNADDVRVTVAAPAARGEANNE 183

Query:    80 LLEYM 84
             LLE+M
Sbjct:   184 LLEFM 188


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.125   0.346    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101        71   0.00091  102 3  11 23  0.40    29
                                                     29  0.42    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  452 (48 KB)
  Total size of DFA:  80 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.98u 0.12s 9.10t   Elapsed:  00:00:01
  Total cpu time:  8.98u 0.12s 9.10t   Elapsed:  00:00:01
  Start:  Fri May 10 17:29:52 2013   End:  Fri May 10 17:29:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034871001	SubName- Full=Putative uncharacterized protein (Chromosome chr4 scaffold_73, whole genome shotgun sequence); (128 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00000690001	RecName- Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; (276 aa)	•								0.737
	GSVIVG00006879001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (240 aa)	•								0.571
	GSVIVG00027282001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (245 aa)	•								0.531
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)	•								0.416

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
pfam02594	78	pfam02594, DUF167, Uncharacterized ACR, YggU famil	1e-08
COG1872	102	COG1872, COG1872, Uncharacterized conserved protei	6e-04
TIGR00251	87	TIGR00251, TIGR00251, TIGR00251 family protein	0.004

>gnl|CDD|217130 pfam02594, DUF167, Uncharacterized ACR, YggU family COG1872

 Score = 47.2 bits (113), Expect = 1e-08
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 39 SVSITIHAKPGSKSCSITDV-SDEAVGVQIDAPAKDGEANAALLEYMS 85
           V + +  KP +K  SI  V  D  + V+I AP  DG+ANA L+++++
Sbjct: 4  GVLLRVRVKPNAKKNSIVGVEEDGELKVRITAPPVDGKANAELIKFLA 51

Length = 78

>gnl|CDD|224784 COG1872, COG1872, Uncharacterized conserved protein [Function unknown]

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 40 VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMS 85
          V + +  KP +K  SI  + +  + + V+I AP  DG+AN  L+++++
Sbjct: 13 VLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLA 60

Length = 102

>gnl|CDD|129353 TIGR00251, TIGR00251, TIGR00251 family protein

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 40 VSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMS 85
          + I I+ +P +   SI   ++  + V V+I AP  +G+AN  L+++  
Sbjct: 8  LLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFG 55

[Hypothetical proteins, Conserved]. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG3276	125	consensus Uncharacterized conserved protein, conta	99.86
PRK05090	95	hypothetical protein; Validated	99.84
TIGR00251	87	conserved hypothetical protein TIGR00251.	99.82
PRK04021	92	hypothetical protein; Reviewed	99.79
PRK00647	96	hypothetical protein; Validated	99.79
PRK01310	104	hypothetical protein; Validated	99.79
PF02594	77	DUF167: Uncharacterised ACR, YggU family COG1872;	99.79
PRK01530	105	hypothetical protein; Reviewed	99.76
COG1872	102	Uncharacterized conserved protein [Function unknow	99.75
COG1451	223	Predicted metal-dependent hydrolase [General funct	84.38

>KOG3276 consensus Uncharacterized conserved protein, contains YggU domain [Function unknown]

Probab=99.86  E-value=5.8e-22  Score=141.40  Aligned_cols=86  Identities=55%  Similarity=0.827  Sum_probs=81.7

Q ss_pred             CCCcccCcccccCCCCccccCCCCCCCCCcceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHH
Q 034200            1 MAPAKKGKSKAKSAGSTQSKIKTNDENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAAL   80 (101)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aL   80 (101)
                      |.|+++|++.+.++.+     +.++.++|+||+.+..|.+.|.||++|||+++.|+++.++.+.|.|.|||.+|+||+||
T Consensus         1 i~pkk~g~s~k~~~t~-----~~~~~~~p~~i~~d~~g~V~i~IhakpgaK~s~It~v~~e~V~V~IaApp~eGeANaeL   75 (125)
T KOG3276|consen    1 VMPKKKGKSTKGAETS-----KVDDKPVPPCISVDTGGLVQIAIHAKPGAKQSAITDVGDEAVGVAIAAPPREGEANAEL   75 (125)
T ss_pred             CccccccccccccccC-----CCccCCCCCceEecCCCeEEEEEEecCCccccceeeccccccceEEecCCccchhhHHH
Confidence            6799999999998887     46778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCce
Q 034200           81 LEYMSSVSLNLL   92 (101)
Q Consensus        81 i~fLAk~~l~vr   92 (101)
                      ++||++. |++|
T Consensus        76 l~ylskv-LgLR   86 (125)
T KOG3276|consen   76 LEYLSKV-LGLR   86 (125)
T ss_pred             HHHHHHH-hhhh
Confidence            9999999 9999

>PRK05090 hypothetical protein; Validated

Probab=99.84  E-value=8.2e-21  Score=130.39  Aligned_cols=62  Identities=23%  Similarity=0.390  Sum_probs=58.4

Q ss_pred             CcceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      +.|+++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |++.
T Consensus         1 ~~~~~~~~~-~~~l~i~V~P~A~~~~i~~~~~~~lkv~v~ApPveGkAN~ali~~LAk~-l~v~   62 (95)
T PRK05090          1 MSAVTWDGD-GLVLRLYIQPKASRDQIVGLHGDELKVAITAPPVDGQANAHLLKFLAKQ-FRVA   62 (95)
T ss_pred             CCceEEeCC-eEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            467888776 8999999999999999999999999999999999999999999999999 9976

>TIGR00251 conserved hypothetical protein TIGR00251

Probab=99.82  E-value=5.7e-20  Score=124.44  Aligned_cols=59  Identities=25%  Similarity=0.425  Sum_probs=54.7

Q ss_pred             EEeCCCcEEEEEEEecCCCccccccccC--CEEEEEEeCCCCCCHHHHHHHHHHhhccCCcee
Q 034200           33 RLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVSLNLLF   93 (101)
Q Consensus        33 ~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr~   93 (101)
                      ++.++ +++|.|+|+|+|++++|.++++  ++|+|+|+|||+|||||+||++|||+. |++++
T Consensus         2 ~~~~~-g~~l~v~V~P~A~~~~i~g~~~~~~~Lki~v~ApP~~GkAN~ali~~La~~-l~v~I   62 (87)
T TIGR00251         2 RENDD-GLLIRIYVQPKASKDSIVGYNEWRKRVEVKIKAPPVEGKANRELIKFFGEI-FGVDV   62 (87)
T ss_pred             eEeCC-eEEEEEEEeeCCCcceeccccCCCCeEEEEEecCCCCChHHHHHHHHHHHH-hCceE
Confidence            45565 8999999999999999999999  899999999999999999999999999 99843

>PRK04021 hypothetical protein; Reviewed

Probab=99.79  E-value=2.4e-19  Score=122.40  Aligned_cols=61  Identities=25%  Similarity=0.415  Sum_probs=55.6

Q ss_pred             eEEeCCCcEEEEEEEecCCCccccccccC--CEEEEEEeCCCCCCHHHHHHHHHHhhccCCceeE
Q 034200           32 IRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVSLNLLFL   94 (101)
Q Consensus        32 i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr~~   94 (101)
                      +++..+ +++|.|+|+|+|++++|.|+++  ++|+|+|+|||+|||||+||++|||+. |++++.
T Consensus         2 ~~~~~~-~v~l~v~v~P~a~~~~i~g~~~~~~~lkv~v~apP~~GkAN~ali~~LAk~-l~~~I~   64 (92)
T PRK04021          2 LKETKE-GVILQVYVQPKAKENEIEGVDEWRGRLKVKIKAPPVKGKANKELVKFFSKL-LGAEVE   64 (92)
T ss_pred             eEEeCC-cEEEEEEEeeCCCcceEccccCCCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCCEE
Confidence            567776 8999999999999999999865  899999999999999999999999999 998543

>PRK00647 hypothetical protein; Validated

Probab=99.79  E-value=1.7e-19  Score=124.34  Aligned_cols=54  Identities=17%  Similarity=0.321  Sum_probs=52.3

Q ss_pred             CcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           38 SSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        38 g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      +.++|.|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |++.
T Consensus         4 ~~~~l~V~V~P~Ak~~~I~g~~~~~Lkvrv~ApPvdGKAN~ali~~LAk~-l~vp   57 (96)
T PRK00647          4 GFWILEVKVTPKARENKIVGFEGGILKVRVTEVPEKGKANDAVIALLAKF-LSLP   57 (96)
T ss_pred             CcEEEEEEEeeCCCcceeccccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            57999999999999999999999999999999999999999999999999 9986

>PRK01310 hypothetical protein; Validated

Probab=99.79  E-value=2.9e-19  Score=124.38  Aligned_cols=61  Identities=21%  Similarity=0.356  Sum_probs=55.6

Q ss_pred             cceEEeCCCcEEEEEEEecCCCccccccccC-----CEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD-----EAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~-----~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      .+|++.++ +++|.|+|+|+|++++|.++++     +.|+|+|+|||+|||||+||++|||+. |+|.
T Consensus         3 ~~~~~~~~-~~~i~v~V~P~A~~~~i~g~~~~~~g~~~lkv~v~apPv~GkAN~ali~~LA~~-l~v~   68 (104)
T PRK01310          3 EPWRYSAD-GLRLAVRLTPRGGRDAIDGIETLADGRAVLKVRVRAVPEGGEANRALIELLAKA-LGVP   68 (104)
T ss_pred             CceEECCC-cEEEEEEEeeCCCcceeccccccCCCccEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            46788776 8999999999999999999864     389999999999999999999999999 9975

>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function

Probab=99.79  E-value=1.4e-19  Score=119.79  Aligned_cols=54  Identities=31%  Similarity=0.632  Sum_probs=47.4

Q ss_pred             CcEEEEEEEecCCCccccccccCC-EEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           38 SSVSITIHAKPGSKSCSITDVSDE-AVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        38 g~v~L~V~VkP~Ak~~~I~g~~~~-~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      ++++|.|+|+|+|++++|.+++++ +|+|+|+|||+||+||+||++|||++ |+++
T Consensus         2 ~~~~l~v~V~P~ak~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~-l~v~   56 (77)
T PF02594_consen    2 DGVILSVRVKPGAKRNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKA-LGVP   56 (77)
T ss_dssp             TEEEEEEECEBSSSS-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHH-CT--
T ss_pred             CeEEEEEEEEeCCCccccccccCceEEEEEEecCCCcChhHHHHHHHHHHH-hCCC
Confidence            489999999999999999999995 99999999999999999999999999 9986

Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.

>PRK01530 hypothetical protein; Reviewed

Probab=99.76  E-value=1.5e-18  Score=121.22  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=51.4

Q ss_pred             CCcEEEEEEEecCCCcccccccc----CCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           37 PSSVSITIHAKPGSKSCSITDVS----DEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        37 ~g~v~L~V~VkP~Ak~~~I~g~~----~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      .+++.|.|+|+|+|++++|.|++    +++|+|+|+|||+|||||+||++|||+. |+|.
T Consensus        11 ~~gv~l~V~V~P~Akk~~i~g~~~~~~~~~Lki~v~ApPvdGkAN~ali~~LAk~-l~v~   69 (105)
T PRK01530         11 SHQALLNLKVKPNAKQNLISNFVIINNIPYLKLSIKAIPEQGKANEEIINYLAKE-WKLS   69 (105)
T ss_pred             CCcEEEEEEEeeCCCcccccceeccCCCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            35899999999999999999985    4799999999999999999999999999 9986

>COG1872 Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=1.2e-18  Score=121.36  Aligned_cols=60  Identities=27%  Similarity=0.498  Sum_probs=55.8

Q ss_pred             cceEEeCCCcEEEEEEEecCCCccccccccCCE--EEEEEeCCCCCCHHHHHHHHHHhhccCCc
Q 034200           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEA--VGVQIDAPAKDGEANAALLEYMSSVSLNL   91 (101)
Q Consensus        30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~--LkV~V~ApP~dGKAN~aLi~fLAk~~l~v   91 (101)
                      .+++..++ +++|.|+|+|+|+++.|.|+++++  |+|+|+|||++||||++|++|||+. |++
T Consensus         4 ~~~~~~~~-~~~l~V~V~P~a~~~~i~g~~~~~~~Lkv~i~apP~~GKAN~~li~~Lak~-~~v   65 (102)
T COG1872           4 SAVKELDD-GVLLRVRVKPKAKRDSIVGLDEWRKRLKVRITAPPVDGKANEELIKFLAKT-FGV   65 (102)
T ss_pred             hhHhhcCC-ceEEEEEECCCCccCcccceecCcceEEEEEecCCCCcchhHHHHHHHHHH-hCC
Confidence            56677776 899999999999999999998877  9999999999999999999999999 998

>COG1451 Predicted metal-dependent hydrolase [General function prediction only]

Probab=84.38  E-value=2.4  Score=32.72  Aligned_cols=45  Identities=13%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             cEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhc
Q 034200           39 SVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSV   87 (101)
Q Consensus        39 ~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~   87 (101)
                      +..+.|.+++++++..|.-..++  .|+|.+||  |..++++..||.+.
T Consensus         9 ~~~~~v~~~r~~r~~~i~i~~~~--~v~v~~P~--~~~~~~~~~fl~k~   53 (223)
T COG1451           9 GLPLEVQVKRRAKRLTIRIPPGG--TVRVSVPP--GLSDEEVENFLAKK   53 (223)
T ss_pred             CccEEEEEeecccceeEEecCCC--eEEEEeCC--CCCHHHHHHHHHHH
Confidence            78999999999999999855555  99999999  88899999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	6e-12
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	2e-09

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A Length = 108

 Score = 56.0 bits (135), Expect = 6e-12
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SV 87
            
Sbjct: 61 KQ 62

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104

 Score = 49.8 bits (119), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSV 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
1n91_A	108	ORF, hypothetical protein; alpha+beta, northeast s	99.83
1jrm_A	104	MTH0637, conserved hypothetical protein MTH637; al	99.79
1t6a_A	126	Rbstp2229 gene product; structural genomics, hypot	85.7

>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A

Probab=99.83  E-value=5.1e-21  Score=133.01  Aligned_cols=61  Identities=23%  Similarity=0.429  Sum_probs=58.3

Q ss_pred             cceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        30 ~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      +||++.++ +++|+|+|+|+|++++|.++++++|+|+|+|||+|||||+||++|||+. |+|+
T Consensus         6 ~~~~~~~~-~v~l~v~V~P~A~r~~I~g~~~~~LkV~v~ApP~dGkAN~ali~~LAk~-l~V~   66 (108)
T 1n91_A            6 SAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQ-FRVA   66 (108)
T ss_dssp             CSEEECSS-EEEEEEEEECSSSSCEEEEECSSCEEEECCCCSSHHHHHHHHHHHHHHH-TCCC
T ss_pred             ceEEECCC-eEEEEEEEeeCCCcceeecccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCc
Confidence            58998776 8999999999999999999999999999999999999999999999999 9986

>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1

Probab=99.79  E-value=3.3e-20  Score=127.83  Aligned_cols=60  Identities=23%  Similarity=0.467  Sum_probs=56.5

Q ss_pred             CcceEEeCCCcEEEEEEEecCCCcccccccc--CCEEEEEEeCCCCCCHHHHHHHHHHhhccCC
Q 034200           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVS--DEAVGVQIDAPAKDGEANAALLEYMSSVSLN   90 (101)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~--~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~   90 (101)
                      ++||++.++ +++|+|+|+|+|++++|.+++  +++|+|+|+|||+|||||+||++|||+. |+
T Consensus         4 m~~~~~~~~-~~~l~v~v~P~A~r~~i~g~~~~~~~lkv~v~ApP~dGkAN~ali~~LAk~-l~   65 (104)
T 1jrm_A            4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET-FG   65 (104)
T ss_dssp             CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHH-HS
T ss_pred             chhEEECCC-cEEEEEEEeeCCCcceEeeeeccCCEEEEEEecCCCCChHHHHHHHHHHHH-hC
Confidence            479999886 799999999999999999965  9999999999999999999999999999 98

>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1

Probab=85.70  E-value=0.68  Score=32.64  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             cccCCEEEEEEeCCCC-----CCHHHHHHHHHHhhccCCceeE
Q 034200           57 DVSDEAVGVQIDAPAK-----DGEANAALLEYMSSVSLNLLFL   94 (101)
Q Consensus        57 g~~~~~LkV~V~ApP~-----dGKAN~aLi~fLAk~~l~vr~~   94 (101)
                      +.+.+.--|.|.-|+.     +|||| |+|+|||+. |.-.|+
T Consensus        74 ~~e~~~~fIQi~LP~~AThGDKgKAN-EfckfLAK~-l~geL~  114 (126)
T 1t6a_A           74 RTAGEETFIDIALPPGATHGDKGKAN-EFSKWLAKT-LGGELH  114 (126)
T ss_dssp             EEETTEEEEEEECCTTCCHHHHHHHH-HHHHHHHHH-HCEEEE
T ss_pred             cccCCcceEEEECCCCCCcCcchhHH-HHHHHHHHH-hhhhee
Confidence            4466777788888885     68999 589999998 766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1yh5a1	100	d.206.1.1 (A:1-100) Hypothetical protein YggU {Esc	1e-11
d1jrma_	104	d.206.1.1 (A:) Hypothetical protein MTH637 {Archae	2e-10

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]} Length = 100

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

 Score = 53.6 bits (129), Expect = 1e-11
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 26 ENLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMS 85
          + + S + +     + + ++ +P +   SI  +  + V V I AP  DG+AN+ L++++ 
Sbjct: 2  DGVMSAVTVND-DGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLG 60

Query: 86 SV 87
            
Sbjct: 61 KQ 62

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 104

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 50.9 bits (122), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 30 SCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSV 87
           C+R V    + + I   P S    I   ++  + + V+I +P + G+AN  +++  S  
Sbjct: 5  DCLREVG-DDLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1yh5a1	100	Hypothetical protein YggU {Escherichia coli, o157	99.81
d1jrma_	104	Hypothetical protein MTH637 {Archaeon Methanobacte	99.76

>d1yh5a1 d.206.1.1 (A:1-100) Hypothetical protein YggU {Escherichia coli, o157 [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein YggU
species: Escherichia coli, o157 [TaxId: 562]

Probab=99.81  E-value=9.9e-21  Score=128.23  Aligned_cols=64  Identities=22%  Similarity=0.408  Sum_probs=60.5

Q ss_pred             CCCcceEEeCCCcEEEEEEEecCCCccccccccCCEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           27 NLPSCIRLVPPSSVSITIHAKPGSKSCSITDVSDEAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        27 ~~p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      .++++|++.++ ++.|.|+|+|+|++++|.++++++|+|+|+|||+||+||+||++|||++ |++.
T Consensus         3 ~~~s~i~~~~~-gv~i~v~V~P~ak~~~i~~~~~~~l~v~v~app~~GkAN~ali~~Lak~-l~v~   66 (100)
T d1yh5a1           3 GVMSAVTVNDD-GLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVDGQANSHLVKFLGKQ-FRVA   66 (100)
T ss_dssp             CCCCSEEECSS-EEEEEEECCBSCSSCCCCCCCSSCEECCBSSCSCTTTHHHHHHHHHHHH-HTCC
T ss_pred             CcccceEEcCC-eEEEEEEEEeCCcccccccccCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            45789999887 8999999999999999999999999999999999999999999999999 9885

>d1jrma_ d.206.1.1 (A:) Hypothetical protein MTH637 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YggU-like
superfamily: YggU-like
family: YggU-like
domain: Hypothetical protein MTH637
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=1.3e-19  Score=123.53  Aligned_cols=62  Identities=23%  Similarity=0.435  Sum_probs=57.5

Q ss_pred             CcceEEeCCCcEEEEEEEecCCCccccccccC--CEEEEEEeCCCCCCHHHHHHHHHHhhccCCce
Q 034200           29 PSCIRLVPPSSVSITIHAKPGSKSCSITDVSD--EAVGVQIDAPAKDGEANAALLEYMSSVSLNLL   92 (101)
Q Consensus        29 p~~i~~~~~g~v~L~V~VkP~Ak~~~I~g~~~--~~LkV~V~ApP~dGKAN~aLi~fLAk~~l~vr   92 (101)
                      ++||++.++ +++|.|+|+|+|++++|.++++  ++|+|+|+|||+||+||+||++|||++ |+-.
T Consensus         4 ~~~l~~~~~-gv~i~v~V~P~A~~~~i~g~~~~~~~l~V~v~app~dGkAN~ali~~Lak~-lks~   67 (104)
T d1jrma_           4 MDCLREVGD-DLLVNIEVSPASGKFGIPSYNEWRKRIEVKIHSPPQKGKANREIIKEFSET-FGRD   67 (104)
T ss_dssp             CCCEEEETT-EEEEEEESCCCSSSCCCCCCCTTTTCCCCCCCTTCCCCCHHHHHHHHHHHH-HSSE
T ss_pred             hHHHhccCC-eEEEEEEEeeCCCcceeeeecCCCCEEEEEEecCCCCChHHHHHHHHHHHH-hCCC
Confidence            589999987 8999999999999999998865  899999999999999999999999999 8743