Citrus Sinensis ID: 034210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLSHSAY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
maateensqlfpIFILTIMALPLVPYTILKLCHAFSKKIKtihcqcsdcarsgkyRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKStsreflshsay
Flexible Loop (DISEMBL)
maateensqlfPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLSHSAY
Low Complexity Region (SEG)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNlslvllwvimiiliyyiKSTSREFLSHSAY
Disordered region (IsUnstruct)
*********LFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKS***********
Disordered Region (DISOPRED)
*********LFPIFILTIMALPLVPYTILKLC*********************************FSTCSNLSLVLLWVIMIILIYYIKSTSRE**SHSA*
Disordered Region (DISEMBL)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSR********
Disordered Region (DISPRO)
******NSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLS****
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLSHSAY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
225464625	688	PREDICTED: translocation protein SEC63 h	0.930	0.136	0.829	5e-41
302143768	618	unnamed protein product [Vitis vinifera]	0.930	0.152	0.829	8e-41
255545152	682	heat shock protein binding protein, puta	1.0	0.148	0.762	4e-40
449445973	685	PREDICTED: translocation protein SEC63 h	0.930	0.137	0.787	8e-39
356530479	685	PREDICTED: translocation protein SEC63 h	0.930	0.137	0.776	1e-38
224135305	685	predicted protein [Populus trichocarpa]	1.0	0.147	0.722	2e-38
224079782	685	predicted protein [Populus trichocarpa]	0.930	0.137	0.765	6e-38
449533991	242	PREDICTED: translocation protein SEC63 h	0.930	0.388	0.787	3e-37
356556432	685	PREDICTED: translocation protein SEC63 h	0.930	0.137	0.765	4e-37
125547707	681	hypothetical protein OsI_15323 [Oryza sa	0.930	0.138	0.734	5e-36

>gi|225464625|ref|XP_002275958.1| PREDICTED: translocation protein SEC63 homolog [Vitis vinifera]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 88/94 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQE 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143768|emb|CBI22629.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (431), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 88/94 (93%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMALPLVPYTI+KLCHA S+K K+IHCQCS+C RSGKYR+SIF
Sbjct: 1  MAASEENSALFPIFILTIMALPLVPYTIMKLCHAASRKTKSIHCQCSECTRSGKYRRSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISNFSTCSNL+LVLLWV+MIIL+YYIK  S+E
Sbjct: 61 KRISNFSTCSNLTLVLLWVVMIILVYYIKHISQE 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545152|ref|XP_002513637.1| heat shock protein binding protein, putative [Ricinus communis] gi|223547545|gb|EEF49040.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  168 bits (425), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MA +EENS LFPIFILTIMALPLVPYTI+KLCHA SKK K+I+C CS+C RSGKYRKSIF
Sbjct: 1   MATSEENSALFPIFILTIMALPLVPYTIMKLCHAASKKSKSIYCNCSECFRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLSHSAY 101
           K+ISNFSTCSNL+L+LLWVIMI L+YYIK+ SRE      Y
Sbjct: 61  KKISNFSTCSNLTLILLWVIMIFLVYYIKNMSREIQVFDPY 101

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445973|ref|XP_004140746.1| PREDICTED: translocation protein SEC63 homolog [Cucumis sativus]

 Score =  164 bits (414), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/94 (78%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1  MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE
Sbjct: 61 KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISRE 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530479|ref|XP_003533808.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  163 bits (413), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/94 (77%), Positives = 85/94 (90%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+P+VPYTI KLC   SKK K+IHCQCS+C+RSGKY KSIF
Sbjct: 1  MAASEENSALFPIFILTIMAIPIVPYTITKLCRFASKKSKSIHCQCSECSRSGKYHKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISN STCSNL+L+LLWV+MI+L+YYIK+ SRE
Sbjct: 61 KRISNVSTCSNLTLLLLWVVMIVLVYYIKTMSRE 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135305|ref|XP_002327614.1| predicted protein [Populus trichocarpa] gi|222836168|gb|EEE74589.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/101 (72%), Positives = 85/101 (84%)

Query: 1   MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
           MAA+EENS LFPIFILTIMA+PLVPYT++KLC A SKK K+IHC CS+C RSGKYRKSIF
Sbjct: 1   MAASEENSALFPIFILTIMAIPLVPYTVMKLCRAASKKSKSIHCNCSECVRSGKYRKSIF 60

Query: 61  KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFLSHSAY 101
           KRISNFST SNL+L+L+W +MI L+YYIK+ SRE      Y
Sbjct: 61  KRISNFSTYSNLTLILVWAVMIFLVYYIKNMSREIQVFDPY 101

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079782|ref|XP_002305942.1| predicted protein [Populus trichocarpa] gi|118481069|gb|ABK92488.1| unknown [Populus trichocarpa] gi|222848906|gb|EEE86453.1| predicted protein [Populus trichocarpa]

 Score =  161 bits (407), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/94 (76%), Positives = 83/94 (88%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFI+TIMA+PLVPYT++KLC A SKK K IHC CS+C RSGKYRKSIF
Sbjct: 1  MAASEENSALFPIFIITIMAIPLVPYTVMKLCRAASKKSKIIHCNCSECLRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRIS FSTCSNL+L+LLWV+MI L+ YIK+ SRE
Sbjct: 61 KRISKFSTCSNLTLILLWVVMIFLVSYIKNMSRE 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533991|ref|XP_004173953.1| PREDICTED: translocation protein SEC63 homolog, partial [Cucumis sativus]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 74/94 (78%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MA +EENS LFPIFILTIMALPLVPYTILKLC A SKK K IHCQC++C+RSGKYRKSIF
Sbjct: 1  MATSEENSALFPIFILTIMALPLVPYTILKLCRAASKKAKIIHCQCAECSRSGKYRKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRI+NFST SNL+LVLLW+ M +L+YYIK+ SRE
Sbjct: 61 KRIANFSTYSNLTLVLLWIFMFVLVYYIKNISRE 94

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556432|ref|XP_003546530.1| PREDICTED: translocation protein SEC63 homolog [Glycine max]

 Score =  158 bits (399), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 84/94 (89%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA+EENS LFPIFILTIMA+P+VPYTI KLC A SKK K+IHC CS+C+RSGKY KSIF
Sbjct: 1  MAASEENSALFPIFILTIMAIPIVPYTITKLCRAASKKSKSIHCHCSECSRSGKYHKSIF 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISN STCSN +L+LLWV+MI+L+YYIK+ SRE
Sbjct: 61 KRISNVSTCSNFTLLLLWVVMIVLVYYIKTMSRE 94

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125547707|gb|EAY93529.1| hypothetical protein OsI_15323 [Oryza sativa Indica Group]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/94 (73%), Positives = 82/94 (87%)

Query: 1  MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
          MAA EENS LF IFILT++ALPLVPYTI++LC A + K KTIHC+CS C RSGKYRKSI+
Sbjct: 1  MAAAEENSSLFLIFILTMIALPLVPYTIMRLCRAANVKAKTIHCRCSGCHRSGKYRKSIY 60

Query: 61 KRISNFSTCSNLSLVLLWVIMIILIYYIKSTSRE 94
          KRISNFSTCSNL+++LLW++MI L+YYIK  SRE
Sbjct: 61 KRISNFSTCSNLTILLLWIVMIFLVYYIKHVSRE 94

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
TAIR|locus:2016354	687	ATERDJ2A [Arabidopsis thaliana	0.930	0.136	0.606	5.4e-24
TAIR|locus:2127373	661	ATERDJ2B [Arabidopsis thaliana	0.930	0.142	0.553	7.1e-22

TAIR|locus:2016354 ATERDJ2A [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.4e-24, P = 5.4e-24
 Identities = 57/94 (60%), Positives = 68/94 (72%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MAA+EENS LFPIFILTIMA+PLVPYT++KL  A SKK +TIHCQC +C RSGKY++S+F
Sbjct:     1 MAASEENSALFPIFILTIMAIPLVPYTMVKLSGALSKKQRTIHCQCLECDRSGKYKRSLF 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSRE 94
             K+ISNFST SN                 K+ SRE
Sbjct:    61 KKISNFSTWSNLTLVLLWVVMIFLIYYTKNMSRE 94

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2127373 ATERDJ2B [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.1e-22, P = 7.1e-22
 Identities = 52/94 (55%), Positives = 66/94 (70%)

Query:     1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIF 60
             MA +EENS LFPIFILT+MA+PLVPYT +KL  AFSKK ++IHCQC +C RSGKY++SI 
Sbjct:     1 MAESEENSVLFPIFILTMMAIPLVPYTFVKLSRAFSKKQRSIHCQCLECDRSGKYKRSIS 60

Query:    61 KRISNFSTCSNXXXXXXXXXXXXXXXXXKSTSRE 94
             + IS+F++CSN                 K+ SRE
Sbjct:    61 QSISSFTSCSNLTVVLLWIVMIFLIYHTKNMSRE 94


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.132   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      101        84   0.00091  102 3  11 22  0.49    28
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  99 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.58u 0.11s 9.69t   Elapsed:  00:00:00
  Total cpu time:  9.58u 0.11s 9.69t   Elapsed:  00:00:00
  Start:  Fri May 10 17:42:02 2013   End:  Fri May 10 17:42:02 2013

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037758001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037864001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)						•			0.800
	GSVIVG00027847001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)						•			0.800
	GSVIVG00024600001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)						•			0.800
	GSVIVG00024508001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (107 aa)						•			0.800
	GSVIVG00018216001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_17, whole genome shot [...] (108 aa)						•			0.800
	GSVIVG00016972001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)						•			0.800
	GSVIVG00001356001	SubName- Full=Chromosome chr8 scaffold_115, whole genome shotgun sequence; (566 aa)							•		0.446

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	101
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-05

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 5  EENSQLFPIFILTIMALPLVPYTI-LKLCHAFSKKIKTIHCQCSDCARSGK--YRKSIFK 61
          +E+    P F+L+ +   ++P T  L    + SK+++ + C C  C    K   RKSIFK
Sbjct: 8  DESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKNVSRKSIFK 67

Query: 62 RISNFSTCSNLSLVLLWVIMIILIYYIKSTSREFL 96
                    +  ++ W+++  LI  I++   E+ 
Sbjct: 68 L-------RKIFTIVGWLVISYLISNIRTLKIEYR 95

Length = 610

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.96
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.72
PF03579	64	SHP: Small hydrophobic protein; InterPro: IPR00532	80.58

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.6e-30  Score=185.36  Aligned_cols=99  Identities=25%  Similarity=0.483  Sum_probs=81.9

Q ss_pred             CcccccCCCchhHHHHHHHhhhhhhhHHHhhhccccccccccccccCccccchHHHHHHhhhhcCcchhHHHHHHHHHHH
Q 034210            1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHAFSKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVI   80 (101)
Q Consensus         1 ~~~YDE~g~tfp~Fvlt~l~lvLiP~T~~~l~~~~~~~~~~~~~~~~~c~~~~~~i~~~~kr~~~~~~~~~i~li~GW~l   80 (101)
                      |.||||+|+|||||+||+++++|+|+||.+|++.........+|+|.+|.+.+.+..+.+++ +..++ |++++++||++
T Consensus         4 ~~eYDE~g~tf~yflls~~~~i~~P~Ty~~i~~~~~~~~~~~~c~c~~c~~~r~~~~~~~~k-~~~~~-~~i~lv~~W~v   81 (230)
T KOG0721|consen    4 DYEYDESGNTFPYFLLSFLAIILLPMTYLLIPRNPEPPKRKEECQCHGCDKKRRKKAKVSPK-SISTK-RKVFLVVGWAV   81 (230)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHHHHHHhccccchhhhhhHHhhhhhhhhhhhhcccCcc-cchhH-HHHHHHHHHHH
Confidence            57999999999999999999999999999998643322224679999999876654333332 22256 99999999999


Q ss_pred             HHHHHHHHHhcccccccCCCC
Q 034210           81 MIILIYYIKSTSREFLSHSAY  101 (101)
Q Consensus        81 ~~~L~y~i~~t~~~~~~~~~~  101 (101)
                      +++|+|+|++++++.+.||||
T Consensus        82 ~~fL~y~i~~~~~~~~~fDPy  102 (230)
T KOG0721|consen   82 IAFLIYKIMNSRRERQKFDPY  102 (230)
T ss_pred             HHHHHHHHhhhhHHhhcCCcH
Confidence            999999999999999999998

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.72  E-value=2e-18  Score=137.03  Aligned_cols=94  Identities=21%  Similarity=0.388  Sum_probs=74.0

Q ss_pred             ccccCCCchhHHHHHHHhhhhhhhHHHhhhccc-cccccccccccCccccchHHHHHHhhhhcCcchhHHHHHHHHHHHH
Q 034210            3 ATEENSQLFPIFILTIMALPLVPYTILKLCHAF-SKKIKTIHCQCSDCARSGKYRKSIFKRISNFSTCSNLSLVLLWVIM   81 (101)
Q Consensus         3 ~YDE~g~tfp~Fvlt~l~lvLiP~T~~~l~~~~-~~~~~~~~~~~~~c~~~~~~i~~~~kr~~~~~~~~~i~li~GW~l~   81 (101)
                      ||||+|.+||+|+|+.+.++..|+||..+-+.. +++....+|.|+.|..+...+  +||  + +.+.|++++++||+++
T Consensus         6 eYDE~g~~~p~fvL~gl~~vvlpmTY~~i~gpsaSKe~~~vr~~~q~~Rpkdknv--~rK--S-If~lR~If~ivgWl~i   80 (610)
T COG5407           6 EYDESGLASPYFVLSGLVPVVLPMTYDLIEGPSASKELRRVRCACQGCRPKDKNV--SRK--S-IFKLRKIFTIVGWLVI   80 (610)
T ss_pred             ccccccccchHHHHhhhhheeeeeehhheeCCcccchhhcchhhhhhcCccccch--hhh--H-HHhhhHHHHHHHHHHH
Confidence            899999999999999999999999998876553 223335779999888644432  111  2 3233999999999999


Q ss_pred             HHHHHHHHhccccc-ccCCCC
Q 034210           82 IILIYYIKSTSREF-LSHSAY  101 (101)
Q Consensus        82 ~~L~y~i~~t~~~~-~~~~~~  101 (101)
                      +||.++|.+.+.+. .-||||
T Consensus        81 ~~L~~~I~~~k~~~~~~fDPy  101 (610)
T COG5407          81 SYLISNIRTLKIEYRRGFDPY  101 (610)
T ss_pred             HHHHHHHHHHHHHHHcCCChH
Confidence            99999999988874 489998

>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]

Probab=80.58  E-value=1.9  Score=25.77  Aligned_cols=20  Identities=25%  Similarity=0.326  Sum_probs=14.7

Q ss_pred             cCCCchhHHHHHHHhhhhhh
Q 034210            6 ENSQLFPIFILTIMALPLVP   25 (101)
Q Consensus         6 E~g~tfp~Fvlt~l~lvLiP   25 (101)
                      -.|++||||-|.+..+.++-
T Consensus        10 FtskFW~YFtLi~M~lti~~   29 (64)
T PF03579_consen   10 FTSKFWTYFTLIFMMLTIGF   29 (64)
T ss_pred             eccccchHHHHHHHHHHHHH
Confidence            46899999988776555443

This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
2lif_A	27	Core protein P21; signal peptide, E1 envelope prot	88.75

>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}

Probab=88.75  E-value=0.074  Score=26.26  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.0

Q ss_pred             CCchhHHHHHHHhhhhhhhHH
Q 034210            8 SQLFPIFILTIMALPLVPYTI   28 (101)
Q Consensus         8 g~tfp~Fvlt~l~lvLiP~T~   28 (101)
                      |--|++|+|+++++.++|..-
T Consensus         3 gcsfsiFlLaLlscLt~Pasa   23 (27)
T 2lif_A            3 GFPFSIFLLALLSCITVPVSA   23 (27)
Confidence            556899999999999999853

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00