Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value
Query 100
PLN02160 136
PLN02160, PLN02160, thiosulfate sulfurtransferase
9e-31
cd00158 89
cd00158, RHOD, Rhodanese Homology Domain (RHOD); a
4e-04
smart00450 100
smart00450, RHOD, Rhodanese Homology Domain
0.001
pfam00581 106
pfam00581, Rhodanese, Rhodanese-like domain
0.001
>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase
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Score = 105 bits (263), Expect = 9e-31
Identities = 45/74 (60%), Positives = 58/74 (78%)
Query: 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLK 86
EV++VDV AK LL+SG+ YLDVRT +EF+ GH +AAKI NIPYM NTP+GRVKN +FL+
Sbjct: 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLE 72
Query: 87 KVRSLCKEEDRLVV 100
+V SL D ++V
Sbjct: 73 QVSSLLNPADDILV 86
>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
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Score = 35.7 bits (83), Expect = 4e-04
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 35 AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71
+ L + LDVR EE+ GH+ A NIP
Sbjct: 2 LKELLDDEDAVLLDVREPEEYAAGHIPGAI--NIPLS 36
The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89
>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain
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Score = 35.1 bits (81), Expect = 0.001
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 47 LDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100
LDVR+ EE++ GH+ A + + + R ++ +VV
Sbjct: 8 LDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61
An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100
>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain
Back Show alignment and domain information
Score = 35.2 bits (81), Expect = 0.001
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 35 AAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKE 94
L +DVR+ EE+ +GH+ A NIP + + K L+++ +
Sbjct: 5 LKALLEADDVVLIDVRSPEEYAKGHIPGA--VNIPLSLPSLD---KLESELEELGKKLDK 59
Query: 95 EDRLVV 100
+ +VV
Sbjct: 60 DKTIVV 65
Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability
Query
100
KOG1530 136
consensus Rhodanese-related sulfurtransferase [Ino
99.49
PLN02160 136
thiosulfate sulfurtransferase
99.41
cd01533 109
4RHOD_Repeat_2 Member of the Rhodanese Homology Do
99.34
PRK00162 108
glpE thiosulfate sulfurtransferase; Validated
99.31
cd01518 101
RHOD_YceA Member of the Rhodanese Homology Domain
99.28
cd01519 106
RHOD_HSP67B2 Member of the Rhodanese Homology Doma
99.27
cd01523 100
RHOD_Lact_B Member of the Rhodanese Homology Domai
99.25
cd01520 128
RHOD_YbbB Member of the Rhodanese Homology Domain
99.23
cd01524 90
RHOD_Pyr_redox Member of the Rhodanese Homology Do
99.23
cd01534 95
4RHOD_Repeat_3 Member of the Rhodanese Homology Do
99.22
cd01527 99
RHOD_YgaP Member of the Rhodanese Homology Domain
99.21
cd01522 117
RHOD_1 Member of the Rhodanese Homology Domain sup
99.17
cd01449 118
TST_Repeat_2 Thiosulfate sulfurtransferase (TST),
99.14
cd01526 122
RHOD_ThiF Member of the Rhodanese Homology Domain
99.14
cd01521 110
RHOD_PspE2 Member of the Rhodanese Homology Domain
99.12
cd01530 121
Cdc25 Cdc25 phosphatases are members of the Rhodan
99.12
cd01448 122
TST_Repeat_1 Thiosulfate sulfurtransferase (TST),
99.12
cd01444 96
GlpE_ST GlpE sulfurtransferase (ST) and homologs a
99.11
PF00581 113
Rhodanese: Rhodanese-like domain This Prosite entr
99.11
cd01528 101
RHOD_2 Member of the Rhodanese Homology Domain sup
99.09
cd01525 105
RHOD_Kc Member of the Rhodanese Homology Domain su
99.07
cd01443 113
Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda
99.06
cd01447 103
Polysulfide_ST Polysulfide-sulfurtransferase - Rho
99.0
COG2897 285
SseA Rhodanese-related sulfurtransferase [Inorgani
99.0
PRK08762
376
molybdopterin biosynthesis protein MoeB; Validated
98.96
cd01531 113
Acr2p Eukaryotic arsenate resistance proteins are
98.95
PLN02723 320
3-mercaptopyruvate sulfurtransferase
98.93
PRK11493
281
sseA 3-mercaptopyruvate sulfurtransferase; Provisi
98.92
cd01445 138
TST_Repeats Thiosulfate sulfurtransferases (TST) c
98.91
PRK09629
610
bifunctional thiosulfate sulfurtransferase/phospha
98.87
PRK01415 247
hypothetical protein; Validated
98.84
TIGR03865 162
PQQ_CXXCW PQQ-dependent catabolism-associated CXXC
98.84
cd01529 96
4RHOD_Repeats Member of the Rhodanese Homology Dom
98.83
PRK09629
610
bifunctional thiosulfate sulfurtransferase/phospha
98.81
PRK10287 104
thiosulfate:cyanide sulfurtransferase; Provisional
98.8
TIGR02981 101
phageshock_pspE phage shock operon rhodanese PspE.
98.8
PRK05320 257
rhodanese superfamily protein; Provisional
98.8
cd01532 92
4RHOD_Repeat_1 Member of the Rhodanese Homology Do
98.8
cd01446 132
DSP_MapKP N-terminal regulatory rhodanese domain o
98.76
PRK00142
314
putative rhodanese-related sulfurtransferase; Prov
98.76
PRK11493 281
sseA 3-mercaptopyruvate sulfurtransferase; Provisi
98.76
PRK07878 392
molybdopterin biosynthesis-like protein MoeZ; Vali
98.75
PRK07411 390
hypothetical protein; Validated
98.74
smart00450 100
RHOD Rhodanese Homology Domain. An alpha beta fold
98.74
cd00158 89
RHOD Rhodanese Homology Domain (RHOD); an alpha be
98.72
cd01535 145
4RHOD_Repeat_4 Member of the Rhodanese Homology Do
98.72
PLN02723
320
3-mercaptopyruvate sulfurtransferase
98.66
PRK05600 370
thiamine biosynthesis protein ThiF; Validated
98.55
COG0607 110
PspE Rhodanese-related sulfurtransferase [Inorgani
98.51
PRK05597 355
molybdopterin biosynthesis protein MoeB; Validated
98.49
PRK11784
345
tRNA 2-selenouridine synthase; Provisional
98.46
TIGR03167
311
tRNA_sel_U_synt tRNA 2-selenouridine synthase. The
98.44
PRK01269 482
tRNA s(4)U8 sulfurtransferase; Provisional
98.43
COG2897
285
SseA Rhodanese-related sulfurtransferase [Inorgani
98.08
KOG3772 325
consensus M-phase inducer phosphatase [Cell cycle
97.72
KOG1529 286
consensus Mercaptopyruvate sulfurtransferase/thios
97.35
COG1054
308
Predicted sulfurtransferase [General function pred
97.12
KOG2017 427
consensus Molybdopterin synthase sulfurylase [Coen
96.95
PRK00142
314
putative rhodanese-related sulfurtransferase; Prov
96.17
COG5105
427
MIH1 Mitotic inducer, protein phosphatase [Cell di
95.65
COG2603
334
Predicted ATPase [General function prediction only
95.63
KOG1529
286
consensus Mercaptopyruvate sulfurtransferase/thios
93.12
TIGR03167 311
tRNA_sel_U_synt tRNA 2-selenouridine synthase. The
92.47
KOG1093 725
consensus Predicted protein kinase (contains TBC a
88.47
PF07172 95
GRP: Glycine rich protein family; InterPro: IPR010
82.59
PRK07688 339
thiamine/molybdopterin biosynthesis ThiF/MoeB-like
81.13
COG1891
235
Uncharacterized protein conserved in archaea [Func
81.01
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
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Probab=99.49 E-value=5.8e-14 Score=92.40 Aligned_cols=73 Identities=41% Similarity=0.653 Sum_probs=64.0
Q ss_pred CCcceeCHHHHHHHhhC-CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhc-CCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLC-KEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~-~~~~~viv 100 (100)
..+..++.++++.+++. +.++||||+|+||.+||+| .++|||+....++|.+++++|.+.+.... +.+++||+
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~--~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf 94 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIP--ASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIF 94 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCc--ceEeccccccccccccCCHHHHHHhcccCCCCCCcEEE
Confidence 56788999999999984 5999999999999999999 99999998888899999999999988754 34668774
>PLN02160 thiosulfate sulfurtransferase
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Probab=99.41 E-value=6.8e-13 Score=87.95 Aligned_cols=72 Identities=57% Similarity=0.949 Sum_probs=59.0
Q ss_pred CcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCe--eeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKI--FNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA--~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
.++.++++++.++++++..+||||+++||..|||| || +|+|+..+.+.+.+.++++...+...++++++||+
T Consensus 13 ~~~~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIp--gA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~Iiv 86 (136)
T PLN02160 13 EVVSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCE--AAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILV 86 (136)
T ss_pred eeeEeCHHHHHHHHhCCCEEEECCCHHHHhcCCCC--CcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEE
Confidence 58999999999998866789999999999999999 77 89998655556677777777666554578888874
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2
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Probab=99.34 E-value=2.8e-12 Score=81.21 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=50.1
Q ss_pred cCCCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 24 SGAEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++...+.++++++.++++. +..+||||+++||+.|||| ||+|+|+. ++...+..+ .+++++||+
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIp--gainip~~-----------~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 5 AVRHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIP--GSVSCPGA-----------ELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred ccccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCC--CceeCCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence 4556789999999998873 4689999999999999999 99999985 444444443 246777764
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
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Probab=99.31 E-value=5.3e-12 Score=79.81 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=49.5
Q ss_pred CCcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
..++.++++++.++++ ++..+||+|+++||+.|||| ||+|+|+. ++.+.+.. +++++++++
T Consensus 2 ~~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~--gA~~ip~~-----------~l~~~~~~-~~~~~~ivv 63 (108)
T PRK00162 2 DQFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAP--GAFHLTND-----------SLGAFMRQ-ADFDTPVMV 63 (108)
T ss_pred CCccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCC--CCeECCHH-----------HHHHHHHh-cCCCCCEEE
Confidence 4678999999999987 46899999999999999999 99999974 44444444 677777764
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily
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Probab=99.28 E-value=4.7e-12 Score=79.11 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=37.0
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.|+++++.++++ ++.+|||||+++||+.|||| ||+|+|+.
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~--gA~~ip~~ 43 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFK--GAVNPDVD 43 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcCChhhhhcCEec--cccCCCcc
Confidence 4689999999887 46899999999999999999 99999986
This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily
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Probab=99.27 E-value=6.2e-12 Score=78.71 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=48.8
Q ss_pred CHHHHHHHhh-C-CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 32 DVRAAKNLLE-S-GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 32 ~~~e~~~~~~-~-~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
+++++.++++ . +.+|||+|++.||+.|||| ||+|+|+..+.....+...+|.+.+... .+++++||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIp--gA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 71 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIP--GAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIF 71 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCC--CcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEE
Confidence 6788888887 4 5899999999999999999 9999998654322222333566655543 366788774
This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily
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Probab=99.25 E-value=9.3e-12 Score=77.54 Aligned_cols=61 Identities=21% Similarity=0.261 Sum_probs=44.9
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHH---HHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDF---LKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~---~~~~~~~~~~~~~viv 100 (100)
|+++|+.+++++ +.+|||||+++||+.|||| ||+|+|+..+. ..+ .....+.++++++||+
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~--ga~~ip~~~~~-------~~~~~~~~~~~~~~~~~~~ivv 66 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDYERWKID--GENNTPYFDPY-------FDFLEIEEDILDQLPDDQEVTV 66 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccC--CCcccccccch-------HHHHHhhHHHHhhCCCCCeEEE
Confidence 578999998874 4789999999999999999 99999985221 111 1222333678888874
This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily
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Probab=99.23 E-value=1.5e-11 Score=80.27 Aligned_cols=39 Identities=28% Similarity=0.493 Sum_probs=36.1
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
||++++.++++++.+|||||+++||+.|||| ||+|+|+.
T Consensus 1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIp--gAinip~~ 39 (128)
T cd01520 1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLP--GAINLPLL 39 (128)
T ss_pred CCHHHHHHHHhcCCEEEECCCHHHhccCcCC--CcEEccCC
Confidence 6899999988877899999999999999999 99999985
This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.23 E-value=2.3e-11 Score=74.62 Aligned_cols=56 Identities=27% Similarity=0.530 Sum_probs=44.8
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++++++.+++.++.++||+|++++|..|||| ||+|+|+. ++.+.+.. +++++++|+
T Consensus 1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hip--gA~~ip~~-----------~~~~~~~~-~~~~~~vvl 56 (90)
T cd01524 1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIK--GAINIPLD-----------ELRDRLNE-LPKDKEIIV 56 (90)
T ss_pred CCHHHHHHHhcCCCEEEECCCHHHHhcCCCC--CCEeCCHH-----------HHHHHHHh-cCCCCcEEE
Confidence 4788999988777899999999999999999 99999985 44444443 667777764
Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3
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Probab=99.22 E-value=2.3e-11 Score=75.30 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.6
Q ss_pred eCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
|+++|+.++++. +.++||||+++||+.|||| ||+|+|+.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghip--ga~~ip~~ 42 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLP--GFRHTPGG 42 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCC--CcEeCCHH
Confidence 688999998873 3679999999999999999 99999985
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily
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Probab=99.21 E-value=1.6e-11 Score=76.19 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=37.5
Q ss_pred ceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..++++++.++++++..+||+|+++||..|||| ||+|+|+.
T Consensus 2 ~~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~--ga~~ip~~ 42 (99)
T cd01527 2 TTISPNDACELLAQGAVLVDIREPDEYLRERIP--GARLVPLS 42 (99)
T ss_pred CccCHHHHHHHHHCCCEEEECCCHHHHHhCcCC--CCEECChh
Confidence 578999999988866899999999999999999 99999985
This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1
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Probab=99.17 E-value=9.9e-11 Score=75.37 Aligned_cols=66 Identities=23% Similarity=0.345 Sum_probs=49.2
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHh-ccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFK-EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~-~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
|+++|+.+++++ +.++||||+++||+ .|||| ||+|+|+..+... .....+..++....++++++|+
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIp--gA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv 69 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVP--DAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLL 69 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCC--Cceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEE
Confidence 588999999874 58899999999999 99999 9999998643210 1123566666554577888774
This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain
Back Show alignment and domain information
Probab=99.14 E-value=9.4e-11 Score=74.68 Aligned_cols=68 Identities=26% Similarity=0.453 Sum_probs=50.2
Q ss_pred eCHHHHHHHhhC-CCeEEecCChhhHhc-----------cCCCCCCeeeeccccC-CCCCCCCCHHHH-HHHHhh-cCCC
Q 034227 31 VDVRAAKNLLES-GYGYLDVRTAEEFKE-----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFL-KKVRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~~-~~~lIDvR~~~e~~~-----------ghIp~~gA~~ip~~~~-~~~g~~~~~~~~-~~~~~~-~~~~ 95 (100)
++++++.+++++ +.++||+|++.||.. |||| ||+|+|+..+ ...+.++.++.. +.+... ++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIp--gA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIP--GAVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCC--CCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 578999998874 589999999999976 9999 9999998754 334555555433 334433 5678
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 79 ~~iv~ 83 (118)
T cd01449 79 KPVIV 83 (118)
T ss_pred CCEEE
Confidence 88874
TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.14 E-value=8.8e-11 Score=75.91 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=39.5
Q ss_pred CCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
.....|+++++.+++++ +.++||+|+++||+.|||| ||+|+|+..
T Consensus 5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIp--gai~ip~~~ 51 (122)
T cd01526 5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLP--EAINIPLSE 51 (122)
T ss_pred CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCC--CCeEccHHH
Confidence 45678999999998874 5789999999999999999 999999863
This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.12 E-value=1.1e-10 Score=74.10 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=45.9
Q ss_pred cceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
-..++++++.+++.. +.++||+|+++||..|||| ||+|+|+.. +..+....++++++||+
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIp--gA~~ip~~~-----------l~~~~~~~i~~~~~vvv 69 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVP--GAINLPHRE-----------ICENATAKLDKEKLFVV 69 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCC--CCEeCCHHH-----------hhhHhhhcCCCCCeEEE
Confidence 367999999999873 3789999999999999999 999999852 22122222677788764
This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.12 E-value=1.4e-10 Score=75.36 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=36.5
Q ss_pred ceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..|+++++.+++++ +.++||||+++||+.|||| ||+|+|+.
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~--gA~~ip~~ 49 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIK--GAVNLSTK 49 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCC--CCEeCCcH
Confidence 56899999999863 4789999999999999999 99999984
They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain
Back Show alignment and domain information
Probab=99.12 E-value=1.9e-10 Score=73.89 Aligned_cols=68 Identities=24% Similarity=0.288 Sum_probs=52.1
Q ss_pred eCHHHHHHHhhC-CCeEEecCCh-------hhHhccCCCCCCeeeeccccCC-----CCCCCCCH-HHHHHHHhh-cCCC
Q 034227 31 VDVRAAKNLLES-GYGYLDVRTA-------EEFKEGHVDAAKIFNIPYMFNT-----PEGRVKNP-DFLKKVRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~~-~~~lIDvR~~-------~e~~~ghIp~~gA~~ip~~~~~-----~~g~~~~~-~~~~~~~~~-~~~~ 95 (100)
++++++.++++. +..|||+|++ +||+.|||| ||+|+|+..+. ..|.+.+. +|.+.+... ++++
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIP--GAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISND 79 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCC--CCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence 789999999874 6889999999 999999999 99999986432 24566654 555555543 5788
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 80 ~~vv~ 84 (122)
T cd01448 80 DTVVV 84 (122)
T ss_pred CEEEE
Confidence 88875
TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.11 E-value=1.9e-10 Score=70.60 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred eCHHHHHHHhhC--CCeEEecCChhhHhc--cCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 31 VDVRAAKNLLES--GYGYLDVRTAEEFKE--GHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 31 i~~~e~~~~~~~--~~~lIDvR~~~e~~~--ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++++++.+++++ +..+||+|++.||+. |||| ||+|+|+. ++.+.+.. +++++++|+
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~--ga~~ip~~-----------~~~~~~~~-~~~~~~ivv 61 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIP--GAIHLDED-----------SLDDWLGD-LDRDRPVVV 61 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCC--CCeeCCHH-----------HHHHHHhh-cCCCCCEEE
Confidence 688999988874 489999999999999 9999 99999985 44444443 678888874
Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family
Back Show alignment and domain information
Probab=99.11 E-value=2e-10 Score=71.68 Aligned_cols=67 Identities=22% Similarity=0.394 Sum_probs=45.6
Q ss_pred CHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCH-HHHHHHHh---hcCCCCceeC
Q 034227 32 DVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP-DFLKKVRS---LCKEEDRLVV 100 (100)
Q Consensus 32 ~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~-~~~~~~~~---~~~~~~~viv 100 (100)
||+|++++++ ++.+|||+|++.+|+.|||| ||+|+|+..+...+..... .+...... ..+++++||+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEYERGHIP--GAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHHHHSBET--TEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCC--CCcccccccccccccccccccccccccccccccccccccee
Confidence 6899999985 57999999999999999999 9999998644222222222 22222222 2467777764
; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2
Back Show alignment and domain information
Probab=99.09 E-value=2.1e-10 Score=71.56 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=35.6
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 30 ~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
.|+++++.++++. +.++||+|+++||+.+||| ||+|+|+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~--ga~~ip~~ 43 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPEELEIAFLP--GFLHLPMS 43 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCC--CCEecCHH
Confidence 3789999999873 3789999999999999999 99999985
Subgroup 2 includes uncharacterized putative rhodanese-related domains.
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=99.07 E-value=2.1e-10 Score=71.70 Aligned_cols=40 Identities=28% Similarity=0.617 Sum_probs=35.6
Q ss_pred eCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 31 VDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 31 i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
||++|++++++. +.+|||+|++.||+.|||| ||+|+|+..
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIp--gA~~ip~~~ 43 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIE--GSINIPFSS 43 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccC--CCEeCCHHH
Confidence 689999999873 4689999999999999999 999999864
Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily
Back Show alignment and domain information
Probab=99.06 E-value=2.1e-10 Score=73.19 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=35.7
Q ss_pred ceeCHHHHHHHhhCC-------CeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLESG-------YGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~-------~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+++++++++++++ .++||||++ ||..|||| ||+|+|+.
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghip--gAi~ip~~ 48 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIK--GSINLPAQ 48 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCccc--Cceecchh
Confidence 578999999998743 689999999 99999999 99999985
Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain
Back Show alignment and domain information
Probab=99.00 E-value=6.5e-10 Score=68.92 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=34.7
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhH-hccCCCCCCeeeecccc
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEF-KEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~-~~ghIp~~gA~~ip~~~ 72 (100)
|+++++.++++ ++.++||+|+++|| ..|||| ||+|+|+..
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIp--ga~~ip~~~ 42 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIP--GAFHAPRGM 42 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCC--CcEEcccch
Confidence 57899999887 46899999999998 579999 999999753
This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=99.00 E-value=7.7e-10 Score=81.53 Aligned_cols=70 Identities=24% Similarity=0.423 Sum_probs=56.5
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhc----------cCCCCCCeeeeccccC-CCCCCCCCHHHHHHHHhh--cCC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKE----------GHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVRSL--CKE 94 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~----------ghIp~~gA~~ip~~~~-~~~g~~~~~~~~~~~~~~--~~~ 94 (100)
..++.+++...++ .+.+|||+|+++||+. |||| ||+|+|+..+ ++.+.+++++..+.+.+. +++
T Consensus 156 ~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIP--GAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~ 233 (285)
T COG2897 156 AVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIP--GAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP 233 (285)
T ss_pred ccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCC--CCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence 4566777888777 5688999999999987 9999 9999999865 555678888887777633 789
Q ss_pred CCceeC
Q 034227 95 EDRLVV 100 (100)
Q Consensus 95 ~~~viv 100 (100)
+++||+
T Consensus 234 ~~~vI~ 239 (285)
T COG2897 234 DKEVIV 239 (285)
T ss_pred CCCEEE
Confidence 999885
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Back Show alignment and domain information
Probab=98.96 E-value=1.4e-09 Score=82.44 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=47.9
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++.++++++.++++++.++||+|+++||+.|||| ||+|+|+. ++.+.+... .+++++||+
T Consensus 2 v~~is~~el~~~l~~~~~ivDvR~~~e~~~ghIp--gAi~ip~~-----------~l~~~~~~~~~~~~~~Ivv 62 (376)
T PRK08762 2 IREISPAEARARAAQGAVLIDVREAHERASGQAE--GALRIPRG-----------FLELRIETHLPDRDREIVL 62 (376)
T ss_pred CceeCHHHHHHHHhCCCEEEECCCHHHHhCCcCC--CCEECCHH-----------HHHHHHhhhcCCCCCeEEE
Confidence 5789999999998877899999999999999999 99999985 333333332 267777764
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=98.95 E-value=7.6e-10 Score=70.48 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=36.0
Q ss_pred cceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 28 VITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
++.|+++++.+++.. +.++||||++ ||..|||| ||+|+|+.
T Consensus 1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~--gA~~ip~~ 44 (113)
T cd01531 1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIK--GSWHYPST 44 (113)
T ss_pred CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCC--CCEecCHH
Confidence 467899999998874 3679999999 99999999 99999985
Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
>PLN02723 3-mercaptopyruvate sulfurtransferase
Back Show alignment and domain information
Probab=98.93 E-value=1.5e-09 Score=80.75 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=52.9
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhH-----------hccCCCCCCeeeeccccC-CCCCCCCCHHHHHH-HHhh-cCCC
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEF-----------KEGHVDAAKIFNIPYMFN-TPEGRVKNPDFLKK-VRSL-CKEE 95 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~-----------~~ghIp~~gA~~ip~~~~-~~~g~~~~~~~~~~-~~~~-~~~~ 95 (100)
++.+++.+.++ ++..|||+|+++|| +.|||| ||+|+|+..+ +.+|.+++.+.+++ +.+. ++++
T Consensus 192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIP--gAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~~~ 269 (320)
T PLN02723 192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIP--GSKCVPFPQMLDSSQTLLPAEELKKRFEQEGISLD 269 (320)
T ss_pred ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCC--CCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCCCC
Confidence 67889988886 46789999999998 569999 9999998654 66788887654444 4443 6788
Q ss_pred CceeC
Q 034227 96 DRLVV 100 (100)
Q Consensus 96 ~~viv 100 (100)
++||+
T Consensus 270 ~~iv~ 274 (320)
T PLN02723 270 SPIVA 274 (320)
T ss_pred CCEEE
Confidence 89875
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=98.92 E-value=2.4e-09 Score=78.11 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=53.0
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCC----------hhhHhccCCCCCCeeeeccccCC-CC----CCCCCH-HHHHHHHhh
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRT----------AEEFKEGHVDAAKIFNIPYMFNT-PE----GRVKNP-DFLKKVRSL 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~----------~~e~~~ghIp~~gA~~ip~~~~~-~~----g~~~~~-~~~~~~~~~ 91 (100)
..++++++.+.++ ++.+|||+|+ +++|+.|||| ||+|+|+..+. .+ +.++.+ +|.+.+.+.
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIp--GA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIP--GAVFFDIEALSDHTSPLPHMMPRPETFAVAMREL 82 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCC--CCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence 5699999999998 4789999996 7899999999 99999986542 22 233333 565555655
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
++++++||+
T Consensus 83 Gi~~d~~VVv 92 (281)
T PRK11493 83 GVNQDKHLVV 92 (281)
T ss_pred CCCCCCEEEE
Confidence 688888875
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain
Back Show alignment and domain information
Probab=98.91 E-value=2.7e-09 Score=70.80 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=50.8
Q ss_pred eCHHHHHHHhh-----CCCeEEecCCh--------hhHhc------------cCCCCCCeeeeccccC-CCCC----CCC
Q 034227 31 VDVRAAKNLLE-----SGYGYLDVRTA--------EEFKE------------GHVDAAKIFNIPYMFN-TPEG----RVK 80 (100)
Q Consensus 31 i~~~e~~~~~~-----~~~~lIDvR~~--------~e~~~------------ghIp~~gA~~ip~~~~-~~~g----~~~ 80 (100)
||++++.+.++ ++.+|||+|.. ++|.. |||| ||+++|+..+ +.++ .++
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIP--gAv~~~~~~~~~~~~~~~~~~p 78 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIP--GASFFDFEECLDEAGFEESMEP 78 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCC--CCEeeCHHHhhCcCCCCCCCCC
Confidence 57899999887 35899999987 89988 9999 9999997643 3333 344
Q ss_pred CH-HHHHHHHhh-cCCCCceeC
Q 034227 81 NP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 81 ~~-~~~~~~~~~-~~~~~~viv 100 (100)
+. +|.+.+.+. ++++++||+
T Consensus 79 ~~~~~~~~~~~~GI~~~~~vVv 100 (138)
T cd01445 79 SEAEFAAMFEAKGIDLDKHLIA 100 (138)
T ss_pred CHHHHHHHHHHcCCCCCCeEEE
Confidence 43 566666655 688888875
Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Back Show alignment and domain information
Probab=98.87 E-value=5.1e-09 Score=83.92 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=55.6
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccC-----CCCCCCCCH-HHHHHHHhh-cCCCCceeC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKNP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~-----~~~g~~~~~-~~~~~~~~~-~~~~~~viv 100 (100)
..|++++++++++ ++.+|||+|++++|..|||| ||+|++++.. +..|.++.. +|.+.+.++ ++++++|||
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIP--GAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVv 86 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIR--GARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVV 86 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCC--CcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEE
Confidence 5799999999998 46899999999999999999 9999997532 113566654 566666665 688999885
>PRK01415 hypothetical protein; Validated
Back Show alignment and domain information
Probab=98.84 E-value=4e-09 Score=76.37 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=39.1
Q ss_pred CcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 27 EVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..+.|+++++.++++ +++++||||++.||+.|||| ||+|+|..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~--gAinip~~ 153 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFK--SAINPNTK 153 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcC--CCCCCChH
Confidence 457799999999998 57899999999999999999 99999975
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein
Back Show alignment and domain information
Probab=98.84 E-value=1.1e-08 Score=69.65 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=49.9
Q ss_pred cCCCcceeCHHHHHHHhhC-CCeEEecCChh----hHhcc---------CCCCCCeeeeccccCCCCCCCCC---HHHHH
Q 034227 24 SGAEVITVDVRAAKNLLES-GYGYLDVRTAE----EFKEG---------HVDAAKIFNIPYMFNTPEGRVKN---PDFLK 86 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~-~~~lIDvR~~~----e~~~g---------hIp~~gA~~ip~~~~~~~g~~~~---~~~~~ 86 (100)
....+..|+++|+.+++++ +.+|||||+++ ||..| ||| ||+|+|+... +.+.. +.|.+
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIP--GAv~ip~~~~---~~l~~~~~~~~~~ 105 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIP--GSLWLPNTGY---GNLAPAWQAYFRR 105 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCC--CcEEecccCC---CCCCCchhHHHHH
Confidence 4456789999999999984 68899999876 56544 999 9999996311 11121 23555
Q ss_pred HHHhh--cCCCCceeC
Q 034227 87 KVRSL--CKEEDRLVV 100 (100)
Q Consensus 87 ~~~~~--~~~~~~viv 100 (100)
.+.+. .+++++||+
T Consensus 106 ~l~~~~~~~~d~~IVv 121 (162)
T TIGR03865 106 GLERATGGDKDRPLVF 121 (162)
T ss_pred HHHHhcCCCCCCEEEE
Confidence 55443 268888875
Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily
Back Show alignment and domain information
Probab=98.83 E-value=4.8e-09 Score=64.80 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=34.9
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
++.++||+|+++||+.|||| ||+|+|+..+. ...+..+.+.. .+++++||+
T Consensus 11 ~~~~iiDvR~~~~~~~~hIp--gA~~ip~~~~~-----~~~~~~~~~~~-~~~~~~ivv 61 (96)
T cd01529 11 PGTALLDVRAEDEYAAGHLP--GKRSIPGAALV-----LRSQELQALEA-PGRATRYVL 61 (96)
T ss_pred CCeEEEeCCCHHHHcCCCCC--CcEeCCHHHhc-----CCHHHHHHhhc-CCCCCCEEE
Confidence 46899999999999999999 99999975321 11222222222 467777764
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Back Show alignment and domain information
Probab=98.81 E-value=7.8e-09 Score=82.87 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=53.7
Q ss_pred eeCHHHHHHHhh-CCCeEEecCChhhHh--------ccCCCCCCeeeecccc-CCCCCCCCCHHHHHHH-Hhh-cCCCCc
Q 034227 30 TVDVRAAKNLLE-SGYGYLDVRTAEEFK--------EGHVDAAKIFNIPYMF-NTPEGRVKNPDFLKKV-RSL-CKEEDR 97 (100)
Q Consensus 30 ~i~~~e~~~~~~-~~~~lIDvR~~~e~~--------~ghIp~~gA~~ip~~~-~~~~g~~~~~~~~~~~-~~~-~~~~~~ 97 (100)
.++.+++.+.++ ++..|||+|+++||. .|||| ||+|+|+.. ++++|.+++++.++++ .+. ++++++
T Consensus 148 ~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIP--GAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~~~ 225 (610)
T PRK09629 148 TATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIP--GAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKE 225 (610)
T ss_pred cccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCC--CCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCCCC
Confidence 577899988887 467899999999994 79999 999999864 4667878876544444 333 688889
Q ss_pred eeC
Q 034227 98 LVV 100 (100)
Q Consensus 98 viv 100 (100)
||+
T Consensus 226 VVv 228 (610)
T PRK09629 226 VIT 228 (610)
T ss_pred EEE
Confidence 875
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=98.80 E-value=6.5e-09 Score=66.19 Aligned_cols=46 Identities=22% Similarity=0.486 Sum_probs=34.9
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
.+..+||+|+++||+.|||| ||+|+|+. ++.+.+.+. .++++++|+
T Consensus 19 ~~~~lIDvR~~~ef~~ghIp--GAiniP~~-----------~l~~~l~~l~~~~~~~IVl 65 (104)
T PRK10287 19 AAEHWIDVRVPEQYQQEHVQ--GAINIPLK-----------EVKERIATAVPDKNDTVKL 65 (104)
T ss_pred CCCEEEECCCHHHHhcCCCC--ccEECCHH-----------HHHHHHHhcCCCCCCeEEE
Confidence 44589999999999999999 99999985 455555543 255666664
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE
Back Show alignment and domain information
Probab=98.80 E-value=9.6e-09 Score=65.02 Aligned_cols=46 Identities=20% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
....+||+|+++||..|||| ||+|+|+. ++.+.+.+. .+++++||+
T Consensus 17 ~~~~lIDvR~~~ef~~ghIp--gAinip~~-----------~l~~~l~~~~~~~~~~vvl 63 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQ--GAINIPLK-----------EIKEHIATAVPDKNDTVKL 63 (101)
T ss_pred cCCEEEECCCHHHHhcCCCC--CCEECCHH-----------HHHHHHHHhCCCCCCeEEE
Confidence 45789999999999999999 99999985 444444443 356667753
Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
>PRK05320 rhodanese superfamily protein; Provisional
Back Show alignment and domain information
Probab=98.80 E-value=8.2e-09 Score=75.02 Aligned_cols=44 Identities=25% Similarity=0.253 Sum_probs=38.3
Q ss_pred CCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 26 AEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
...+.++++++.++++. +.++||||++.||+.|||| ||+|+|+.
T Consensus 107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~--GAiniPl~ 157 (257)
T PRK05320 107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFD--GALDYRID 157 (257)
T ss_pred CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccC--CCEeCChh
Confidence 34578999999988863 2689999999999999999 99999985
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1
Back Show alignment and domain information
Probab=98.80 E-value=6.4e-09 Score=64.09 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
++.++||+|+++||..|||| ||+|+|+.
T Consensus 9 ~~~~liDvR~~~e~~~~hi~--ga~~ip~~ 36 (92)
T cd01532 9 EEIALIDVREEDPFAQSHPL--WAANLPLS 36 (92)
T ss_pred CCeEEEECCCHHHHhhCCcc--cCeeCCHH
Confidence 46899999999999999999 99999985
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase
Back Show alignment and domain information
Probab=98.76 E-value=9.2e-09 Score=67.09 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=36.3
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 30 ~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
.|+++++.++++. +.++||+|++.+|+.|||| ||+|+|+..
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~--~ai~i~~~~ 44 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIR--GAVNVCCPT 44 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCccc--CcEecChHH
Confidence 4789999999973 5799999999999999999 999999863
This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=98.76 E-value=1.3e-08 Score=75.88 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=47.9
Q ss_pred CcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh--cCCCCceeC
Q 034227 27 EVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLVV 100 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~--~~~~~~viv 100 (100)
....++++++.++++ ++.++||||++.||+.|||| ||+|+|+..+. ++...+.+. ..++++|++
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~--GAi~ip~~~~~--------~~~~~l~~~~~~~kdk~Ivv 176 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFE--NAIEPDIETFR--------EFPPWVEENLDPLKDKKVVM 176 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCC--CCEeCCHHHhh--------hhHHHHHHhcCCCCcCeEEE
Confidence 456799999999887 46899999999999999999 99999986321 232333221 357788774
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=98.76 E-value=1.3e-08 Score=74.37 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=49.0
Q ss_pred eCHHHHHHHhh-CCCeEEecCChhhHh-----------ccCCCCCCeeeeccccCCCCCCCCCHHHHHH-HHhh-cCCCC
Q 034227 31 VDVRAAKNLLE-SGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK-VRSL-CKEED 96 (100)
Q Consensus 31 i~~~e~~~~~~-~~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~-~~~~-~~~~~ 96 (100)
++.+++...++ ++..|||+|+++||. .|||| ||+|+|+..+..+|.+.+++.++. +.+. +++++
T Consensus 155 ~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIp--gA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 232 (281)
T PRK11493 155 VRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIP--GALNVPWTELVREGELKTTDELDAIFFGRGVSFDR 232 (281)
T ss_pred ecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCC--CcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence 44566665555 367899999999994 69999 999999876655677776544444 3333 57888
Q ss_pred ceeC
Q 034227 97 RLVV 100 (100)
Q Consensus 97 ~viv 100 (100)
+||+
T Consensus 233 ~ii~ 236 (281)
T PRK11493 233 PIIA 236 (281)
T ss_pred CEEE
Confidence 8875
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Back Show alignment and domain information
Probab=98.75 E-value=1.3e-08 Score=77.67 Aligned_cols=63 Identities=22% Similarity=0.217 Sum_probs=47.4
Q ss_pred CCcceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
...+.++++|+.+++++ +..+||+|+++||+.|||| ||+|+|+..+. . ...+.. +++++++|+
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIp--GAinip~~~l~------~---~~~~~~-l~~d~~iVv 348 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIP--GAQLIPKSEIL------S---GEALAK-LPQDRTIVL 348 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCC--CCEEcChHHhc------c---hhHHhh-CCCCCcEEE
Confidence 35678999999998874 4689999999999999999 99999985221 0 012222 677888764
>PRK07411 hypothetical protein; Validated
Back Show alignment and domain information
Probab=98.74 E-value=1.5e-08 Score=77.38 Aligned_cols=66 Identities=24% Similarity=0.327 Sum_probs=48.1
Q ss_pred CCcceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
...+.++++|+.++++. +.++||||+++||+.|||| ||+|+|+..+... ...+++.+ ++++++||+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIp--GAiniP~~~l~~~------~~~~~l~~-l~~d~~IVv 347 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIP--GSVLVPLPDIENG------PGVEKVKE-LLNGHRLIA 347 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCC--CCEEccHHHhhcc------cchHHHhh-cCCCCeEEE
Confidence 45678999999998873 3689999999999999999 9999998633110 11123333 567777764
>smart00450 RHOD Rhodanese Homology Domain
Back Show alignment and domain information
Probab=98.74 E-value=1.4e-08 Score=61.39 Aligned_cols=57 Identities=28% Similarity=0.436 Sum_probs=37.6
Q ss_pred CCCeEEecCChhhHhccCCCCCCeeeeccccCCC-CCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTP-EGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~-~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
++.+|||+|+++||..|||| ||+|+|+..+.. ........+.+..... .+++++||+
T Consensus 3 ~~~~ivDvR~~~e~~~~hi~--ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 61 (100)
T smart00450 3 EKVVLLDVRSPEEYEGGHIP--GAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61 (100)
T ss_pred CCEEEEECCCHHHhccCCCC--CceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEE
Confidence 46789999999999999999 999999864422 2222222333333322 467777764
An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein
Back Show alignment and domain information
Probab=98.72 E-value=1.5e-08 Score=60.60 Aligned_cols=34 Identities=41% Similarity=0.642 Sum_probs=28.8
Q ss_pred HHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 36 AKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 36 ~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+.++ ++..+||+|++.||+.|||| ||+|+|+.
T Consensus 2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~--ga~~~~~~ 36 (89)
T cd00158 2 LKELLDDEDAVLLDVREPEEYAAGHIP--GAINIPLS 36 (89)
T ss_pred hHHHhcCCCeEEEECCCHHHHhccccC--CCEecchH
Confidence 344454 57899999999999999999 99999985
The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4
Back Show alignment and domain information
Probab=98.72 E-value=1.9e-08 Score=67.28 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=37.9
Q ss_pred HHHHhhC--CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 36 AKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 36 ~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
+.+++++ ..+|||||++++|+.|||| ||+++|.. .+.+.+.. ++++++|||
T Consensus 2 l~~~l~~~~~~~ivDvR~~~e~~~gHIp--gAi~~~~~-----------~l~~~l~~-l~~~~~vVv 54 (145)
T cd01535 2 LAAWLGEGGQTAVVDVTASANYVKRHIP--GAWWVLRA-----------QLAQALEK-LPAAERYVL 54 (145)
T ss_pred hHHHHhCCCCeEEEECCCHHHHHcCCCC--CceeCCHH-----------HHHHHHHh-cCCCCCEEE
Confidence 4455553 4799999999999999999 99999864 44445544 566777764
This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
>PLN02723 3-mercaptopyruvate sulfurtransferase
Back Show alignment and domain information
Probab=98.66 E-value=5.5e-08 Score=72.42 Aligned_cols=70 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred ceeCHHHHHHHhh-CCCeEEecC--------C-hhhHhccCCCCCCeeeeccccCCC-C----CCCCC-HHHHHHHHhh-
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVR--------T-AEEFKEGHVDAAKIFNIPYMFNTP-E----GRVKN-PDFLKKVRSL- 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR--------~-~~e~~~ghIp~~gA~~ip~~~~~~-~----g~~~~-~~~~~~~~~~- 91 (100)
..|+++++.++++ ++.+|||+| + .++|+.|||| ||+|+++..+.. . +.++. .+|.+.+.++
T Consensus 22 ~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIP--gAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~G 99 (320)
T PLN02723 22 PVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIP--GALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALG 99 (320)
T ss_pred ceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCC--CCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcC
Confidence 5899999999997 478899996 3 3789999999 999999764422 1 23444 3566666665
Q ss_pred cCCCCceeC
Q 034227 92 CKEEDRLVV 100 (100)
Q Consensus 92 ~~~~~~viv 100 (100)
++++++|||
T Consensus 100 i~~~~~VVv 108 (320)
T PLN02723 100 IENKDGVVV 108 (320)
T ss_pred CCCCCEEEE
Confidence 578888875
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Back Show alignment and domain information
Probab=98.55 E-value=8.1e-08 Score=73.01 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=36.5
Q ss_pred eeCHHHHHHHhhC-CCeEEecCChhhHhccCCCC-CCeeeecccc
Q 034227 30 TVDVRAAKNLLES-GYGYLDVRTAEEFKEGHVDA-AKIFNIPYMF 72 (100)
Q Consensus 30 ~i~~~e~~~~~~~-~~~lIDvR~~~e~~~ghIp~-~gA~~ip~~~ 72 (100)
.++++|+.+++++ +.++||||+++||+.||||+ .||+|+|+..
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~ 316 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSA 316 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHH
Confidence 5789999998874 57899999999999999983 2599999863
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.51 E-value=1.9e-07 Score=58.13 Aligned_cols=28 Identities=39% Similarity=0.641 Sum_probs=26.1
Q ss_pred CCCeEEecCChhhHhccCCCCCC-eeeeccc
Q 034227 42 SGYGYLDVRTAEEFKEGHVDAAK-IFNIPYM 71 (100)
Q Consensus 42 ~~~~lIDvR~~~e~~~ghIp~~g-A~~ip~~ 71 (100)
++..+||||+++||+.+||| + +.|+|..
T Consensus 19 ~~~~liDvR~~~e~~~~~i~--~~~~~ip~~ 47 (110)
T COG0607 19 EDAVLLDVREPEEYERGHIP--GAAINIPLS 47 (110)
T ss_pred CCCEEEeccChhHhhhcCCC--cceeeeecc
Confidence 47899999999999999999 8 9999986
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Back Show alignment and domain information
Probab=98.49 E-value=1.4e-07 Score=71.33 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=35.1
Q ss_pred CcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 27 EVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....++++++.+. .++..+||+|+++||+.|||| ||+|+|+.
T Consensus 259 ~~~~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIp--gAinip~~ 300 (355)
T PRK05597 259 FGEVLDVPRVSAL-PDGVTLIDVREPSEFAAYSIP--GAHNVPLS 300 (355)
T ss_pred cccccCHHHHHhc-cCCCEEEECCCHHHHccCcCC--CCEEeCHH
Confidence 3456888888743 356899999999999999999 99999985
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Back Show alignment and domain information
Probab=98.46 E-value=1.9e-07 Score=70.48 Aligned_cols=38 Identities=32% Similarity=0.583 Sum_probs=33.5
Q ss_pred CHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 32 DVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 32 ~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+.+++.+.+.++.++||||+|.||+.|||| ||+|+|+.
T Consensus 4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIp--gAiniPl~ 41 (345)
T PRK11784 4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIP--GAINLPLL 41 (345)
T ss_pred cHHHHHHHHhCCCEEEECCCHHHHhcCCCC--CeeeCCCC
Confidence 467777776678899999999999999999 99999985
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase
Back Show alignment and domain information
Probab=98.44 E-value=2e-07 Score=69.56 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=25.0
Q ss_pred CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 43 GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 43 ~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
+..+||||+|.||+.|||| ||+|+|+.
T Consensus 2 ~~~liDVRsp~Ef~~ghip--gAiniPl~ 28 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLP--GAINLPLL 28 (311)
T ss_pred CCEEEECCCHHHHhcCCCc--CCEecccc
Confidence 4689999999999999999 99999985
The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=98.43 E-value=3.4e-07 Score=71.66 Aligned_cols=52 Identities=10% Similarity=0.254 Sum_probs=39.1
Q ss_pred HHHHHhhCCCeEEecCChhhHhccCCCCCC----eeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 35 AAKNLLESGYGYLDVRTAEEFKEGHVDAAK----IFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 35 e~~~~~~~~~~lIDvR~~~e~~~ghIp~~g----A~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
+..+.+.++.++||||+++||+.|||| | |+|+|+. ++...+.. +++++++|+
T Consensus 399 ~~~~~~~~~~~lIDVR~~~E~~~~hI~--g~~~~a~niP~~-----------~l~~~~~~-l~~~~~iiv 454 (482)
T PRK01269 399 ETVSELPPDDVIIDIRSPDEQEDKPLK--LEGVEVKSLPFY-----------KLSTQFGD-LDQSKTYLL 454 (482)
T ss_pred HHHHhcCCCCEEEECCCHHHHhcCCCC--CCCceEEECCHH-----------HHHHHHhh-cCCCCeEEE
Confidence 344444567899999999999999999 8 9999985 44444443 677788764
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Back Show alignment and domain information
Probab=98.08 E-value=1.1e-05 Score=59.58 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=55.5
Q ss_pred CCcceeCHHHHHHHhh-C-----CCeEEecCCh--hhHhccCCCCCCeeeeccccC--CC---CCCCCCH-HHHHHHHhh
Q 034227 26 AEVITVDVRAAKNLLE-S-----GYGYLDVRTA--EEFKEGHVDAAKIFNIPYMFN--TP---EGRVKNP-DFLKKVRSL 91 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~-~-----~~~lIDvR~~--~e~~~ghIp~~gA~~ip~~~~--~~---~g~~~~~-~~~~~~~~~ 91 (100)
.....|+++++.+.++ + +..+++++.. ++|..|||| ||+++++... .+ .++++++ +|.+.+.++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIP--GAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIP--GAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCC--CCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 4567899999999886 3 5666766655 899999999 9999998753 22 3677775 676777776
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
+..+.+||+
T Consensus 86 GI~~d~tVVv 95 (285)
T COG2897 86 GIRNDDTVVV 95 (285)
T ss_pred CCCCCCEEEE
Confidence 788888875
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Back Show alignment and domain information
Probab=97.72 E-value=2.7e-05 Score=58.38 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=39.1
Q ss_pred cCCCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....++.|+++.++.++++ ..+|||+|-|-||..|||+ ||+|++..
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIk--gavnl~~~ 203 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIK--GAVNLYSK 203 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccc--cceecccH
Confidence 4457899999999999962 2468999999999999999 99999853
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Back Show alignment and domain information
Probab=97.35 E-value=0.00021 Score=52.83 Aligned_cols=56 Identities=27% Similarity=0.494 Sum_probs=41.2
Q ss_pred CCeEEecCChhhHh-----------ccCCCCCCeeeeccccC-CCCCCCCCH-HHHHHHHhh-cCCCCceeC
Q 034227 43 GYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 43 ~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~-~~~g~~~~~-~~~~~~~~~-~~~~~~viv 100 (100)
++..+|.|..++|. .|||| ||+|+|++.+ +++|..+++ +....+.+. ++.++|+|+
T Consensus 172 ~~~~~DaRs~grF~Gt~p~~~~~~~ggHIp--Ga~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~ 241 (286)
T KOG1529|consen 172 NFQYLDARSKGRFDGTEPEPRSGATGGHIP--GAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIV 241 (286)
T ss_pred cceeeeccccccccccCCCCcccCcCccCC--CcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEE
Confidence 57899999999993 59999 9999999865 778876654 333333333 567888764
>COG1054 Predicted sulfurtransferase [General function prediction only]
Back Show alignment and domain information
Probab=97.12 E-value=0.00045 Score=51.45 Aligned_cols=62 Identities=16% Similarity=0.132 Sum_probs=46.8
Q ss_pred cceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh--cCCCCcee
Q 034227 28 VITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL--CKEEDRLV 99 (100)
Q Consensus 28 ~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~--~~~~~~vi 99 (100)
-.-++|+|+.+++. +++++||.|..-||+-||.. ||++.+...+ .+|..++.+. .-++++|+
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~--gAv~p~~~tF--------refP~~v~~~~~~~~~KkVv 176 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFE--GAVEPDIETF--------REFPAWVEENLDLLKDKKVV 176 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeEeeeeec--CccCCChhhh--------hhhHHHHHHHHHhccCCcEE
Confidence 35689999999998 68999999999999999999 9999876422 2555555443 23455664
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Back Show alignment and domain information
Probab=96.95 E-value=0.00045 Score=52.68 Aligned_cols=43 Identities=30% Similarity=0.329 Sum_probs=38.3
Q ss_pred cceeCHHHHHHHhhC--CCeEEecCChhhHhccCCCCCCeeeecccc
Q 034227 28 VITVDVRAAKNLLES--GYGYLDVRTAEEFKEGHVDAAKIFNIPYMF 72 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~--~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~ 72 (100)
-..|+..|+++.++. ..+++|||++-||+-.|+| +|+|||+..
T Consensus 316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP--~avNIPL~~ 360 (427)
T KOG2017|consen 316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLP--EAVNIPLKE 360 (427)
T ss_pred hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecc--cccccchhh
Confidence 467999999999984 5799999999999999999 999999864
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Back Show alignment and domain information
Probab=96.17 E-value=0.0015 Score=48.85 Aligned_cols=39 Identities=10% Similarity=-0.065 Sum_probs=33.8
Q ss_pred eCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 31 VDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 31 i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
-+++++++.+.+....+|+|+...|+.+||+ |++++|..
T Consensus 16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIn--gtis~~~~ 54 (314)
T PRK00142 16 EDPEAFRDEHLALCKSLGLKGRILVAEEGIN--GTVSGTIE 54 (314)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEEcCCCce--EEEEecHH
Confidence 4578888877766788999999999999999 99999974
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Back Show alignment and domain information
Probab=95.65 E-value=0.0071 Score=45.90 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=36.9
Q ss_pred CCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 26 AEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
..++.|+++.+++.++. ..+|||+|=+-||..|||. +|+||.-
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIi--naVNi~s 288 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHII--NAVNISS 288 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceee--eeeecch
Confidence 35789999999998862 3469999999999999999 9999863
>COG2603 Predicted ATPase [General function prediction only]
Back Show alignment and domain information
Probab=95.63 E-value=0.009 Score=44.70 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=30.8
Q ss_pred HHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 33 VRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 33 ~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
.++...++.++..+||||.|-||..|+.| +++|+|..
T Consensus 5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~--ia~nl~~~ 41 (334)
T COG2603 5 EQDYRALLLADTPLIDVRAPIEFENGAMP--IAINLPLM 41 (334)
T ss_pred HHHHHHHHhcCCceeeccchHHHhcccch--hhhccccc
Confidence 34555555578999999999999999999 99999973
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Back Show alignment and domain information
Probab=93.12 E-value=0.32 Score=36.20 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=49.9
Q ss_pred ceeCHHHHHHHhh-CCCeEEecC---------ChhhHhccCCCCCCeeeeccccC-----CCCCCCCC-HHHHHHHHhh-
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVR---------TAEEFKEGHVDAAKIFNIPYMFN-----TPEGRVKN-PDFLKKVRSL- 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR---------~~~e~~~ghIp~~gA~~ip~~~~-----~~~g~~~~-~~~~~~~~~~- 91 (100)
..++++.+.+.+. .+.+|||.. ...||...||| ||.++.++.. ..+++++. +.|.+....+
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hip--ga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIP--GASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCC--CceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 4578888888887 478999974 12366779999 9999987653 22466666 4677777765
Q ss_pred cCCCCceeC
Q 034227 92 CKEEDRLVV 100 (100)
Q Consensus 92 ~~~~~~viv 100 (100)
++++..+||
T Consensus 83 i~n~d~vVi 91 (286)
T KOG1529|consen 83 VDNGDHVVI 91 (286)
T ss_pred CCCCCeEEE
Confidence 677777764
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase
Back Show alignment and domain information
Probab=92.47 E-value=0.31 Score=36.56 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=29.3
Q ss_pred cceeCHHHHHHHhh-CCCeEEecCChhhHhc---cCCC
Q 034227 28 VITVDVRAAKNLLE-SGYGYLDVRTAEEFKE---GHVD 61 (100)
Q Consensus 28 ~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~---ghIp 61 (100)
...+..+++.+.+. .+..+||+|+.++|+. ||++
T Consensus 135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence 46678899988887 5689999999999987 9998
The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Back Show alignment and domain information
Probab=88.47 E-value=0.1 Score=42.40 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=37.1
Q ss_pred CCCcceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 25 GAEVITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....+.+++++++.+ +...++|.|...||+.+|++ +++|+|+.
T Consensus 618 se~~prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s--~s~nip~~ 660 (725)
T KOG1093|consen 618 SEHCPRISAEDLIWL--KMLYVLDTRQESEFQREHFS--DSINIPFN 660 (725)
T ss_pred hhcCccccHHHHHHH--HHHHHHhHHHHHHHHHhhcc--ccccCCcc
Confidence 446788999988776 45789999999999999999 99999986
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins
Back Show alignment and domain information
Probab=82.59 E-value=2 Score=26.90 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=12.2
Q ss_pred CcchhhHHHHHHHHHHHHHHh
Q 034227 1 MGVSRNWVTFLRGLFLLLLIC 21 (100)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (100)
|+ |+..|+...++.++++++
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 78 888776655554444433
Some of them may be involved in resistance to environmental stress [].
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Back Show alignment and domain information
Probab=81.13 E-value=3.2 Score=31.36 Aligned_cols=42 Identities=12% Similarity=-0.063 Sum_probs=32.7
Q ss_pred CcceeCHHHHHHHhh-------CCCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 27 EVITVDVRAAKNLLE-------SGYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-------~~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
....++++++.++++ .+..+||+|++. |+-.++|+ |...|--
T Consensus 275 ~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~-gr~~i~g 323 (339)
T PRK07688 275 HKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKD-GRVLVHG 323 (339)
T ss_pred CcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcC-CCEEEEC
Confidence 457799999988873 357899999988 99999997 4545543
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Back Show alignment and domain information
Probab=81.01 E-value=2.8 Score=29.69 Aligned_cols=36 Identities=28% Similarity=0.527 Sum_probs=27.9
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
+..|+.+|+.+.+..++-||||..|+| |++ || |+||
T Consensus 5 vSPin~eEA~eAieGGAdIiDVKNP~E---GSL---GA-NFPW 40 (235)
T COG1891 5 VSPINREEAIEAIEGGADIIDVKNPAE---GSL---GA-NFPW 40 (235)
T ss_pred eccCCHHHHHHHhhCCCceEeccCccc---Ccc---cC-CChH
Confidence 567888999998888899999999886 332 22 6777
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value
Query
100
d1tq1a_ 119
c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc
7e-12
d1yt8a4 130
c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase
4e-04
d1s0aa_
429
c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona
0.002
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119
Back Hide information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 54.9 bits (131), Expect = 7e-12
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 30 TVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVR 89
+V V A +LL +G+ YLDVRT EEF +GH A N+PYM G KN DFL++V
Sbjct: 9 SVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAI--NVPYMNRGASGMSKNTDFLEQVS 66
Query: 90 SLCKEEDRLVV 100
S + D ++V
Sbjct: 67 SHFGQSDNIIV 77
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]
Score = 35.0 bits (79), Expect = 4e-04
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 26 AEVITVDVRAAKNLLESGYG---YLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNP 82
A V +D+ + LDVRT EE++ GH+ ++ + +
Sbjct: 20 AGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVR 79
Query: 83 DF 84
Sbjct: 80 GA 81
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]
Score = 33.4 bits (75), Expect = 0.002
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 55 FKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100
+ A + P + R+ +P++LK++R +C E L++
Sbjct: 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability
Query 100
d1gmxa_ 108
Sulfurtransferase GlpE {Escherichia coli [TaxId: 5
99.53
d1tq1a_ 119
Thiosulfate sulfurtransferase/Senescence-associate
99.46
d1e0ca2 136
Sulfurtransferase {Azotobacter vinelandii [TaxId:
99.41
d1yt8a1 136
Thiosulfate sulfurtransferase PA2603 {Pseudomonas
99.38
d1rhsa2 144
Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
99.33
d1yt8a3 157
Thiosulfate sulfurtransferase PA2603 {Pseudomonas
99.33
d1yt8a2 101
Thiosulfate sulfurtransferase PA2603 {Pseudomonas
99.28
d1t3ka_ 132
Dual specificity phosphatase Cdc25 {Thale cress (A
99.25
d1yt8a4 130
Thiosulfate sulfurtransferase PA2603 {Pseudomonas
99.23
d1urha2 120
3-mercaptopyruvate sulfurtransferase {Escherichia
99.2
d1uara1 143
Sulfurtransferase {Thermus thermophilus [TaxId: 27
99.19
d1qxna_ 137
Polysulfide-sulfur transferase (sulfide dehydrogen
99.17
d1uara2 141
Sulfurtransferase {Thermus thermophilus [TaxId: 27
99.15
d1e0ca1 135
Sulfurtransferase {Azotobacter vinelandii [TaxId:
99.14
d2gwfa1 135
Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum
99.14
d1urha1 147
3-mercaptopyruvate sulfurtransferase {Escherichia
99.14
d1rhsa1 149
Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
99.01
d1okga1 156
3-mercaptopyruvate sulfurtransferase {Leishmania m
98.85
d1c25a_ 161
CDC25a {Human (Homo sapiens) [TaxId: 9606]}
98.84
d1hzma_ 154
Erk2 binding domain of Mapk phosphatase mkp-3 {Hum
98.81
d1ymka1 174
CDC25b {Human (Homo sapiens) [TaxId: 9606]}
98.8
d1okga2 139
3-mercaptopyruvate sulfurtransferase {Leishmania m
98.74
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=5.8e-15 Score=91.48 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCCcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 25 GAEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
|..++.||++|+.++++ ++.+|||||++.||+.|||| ||+|+|.+ ++.+.+.+ ++++++||+
T Consensus 1 m~~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~--gA~~ip~~-----------~l~~~~~~-~~~~~~ivv 63 (108)
T d1gmxa_ 1 MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAV--QAFHLTND-----------TLGAFMRD-NDFDTPVMV 63 (108)
T ss_dssp CCSCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEET--TCEECCHH-----------HHHHHHHH-SCTTSCEEE
T ss_pred CCCCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCC--Ccccccch-----------hHHHHhhh-ccccCcccc
Confidence 45789999999999998 57999999999999999999 99999985 55555554 788998875
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.46 E-value=5.2e-14 Score=88.37 Aligned_cols=71 Identities=44% Similarity=0.669 Sum_probs=58.6
Q ss_pred cceeCHHHHHHHhhCCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 28 VITVDVRAAKNLLESGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 28 ~~~i~~~e~~~~~~~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
...++++++.++++++.+|||||+++||+.|||| ||+|+|+......+....+++.+++...++++++||+
T Consensus 7 p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~--ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 77 (119)
T d1tq1a_ 7 PSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHAC--GAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIV 77 (119)
T ss_dssp CEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBT--TBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEE
T ss_pred CCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCC--CccchhhcccccccccccHHHHHHHHHhcCCCcEEEE
Confidence 4678999999988878899999999999999999 9999998765545555566777777666788888874
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]
Probab=99.41 E-value=7.6e-14 Score=89.81 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCCcceeCHHHHHHHhh-CCCeEEecCChhhHh--------ccCCCCCCeeeeccccC-CCCCCCCCH-HHHHHHHhh-c
Q 034227 25 GAEVITVDVRAAKNLLE-SGYGYLDVRTAEEFK--------EGHVDAAKIFNIPYMFN-TPEGRVKNP-DFLKKVRSL-C 92 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~--------~ghIp~~gA~~ip~~~~-~~~g~~~~~-~~~~~~~~~-~ 92 (100)
....+.+|.+++.++++ ++.+|||+|+++||. .|||| ||+|+|+..+ +++|.++++ ++.+.+.+. +
T Consensus 8 ~~~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIP--GAinip~~~~~~~~~~~~~~~~l~~~~~~~gi 85 (136)
T d1e0ca2 8 LHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIP--GAVNFEWTAAMDPSRALRIRTDIAGRLEELGI 85 (136)
T ss_dssp CCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCT--TCEECCGGGGEEGGGTTEECTTHHHHHHHTTC
T ss_pred cCCCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcch--hHhhhhhhhhhccccccchhHHHhhhhhhccc
Confidence 34567899999999998 578999999999995 79999 9999998754 566766543 555666655 6
Q ss_pred CCCCceeC
Q 034227 93 KEEDRLVV 100 (100)
Q Consensus 93 ~~~~~viv 100 (100)
+++++||+
T Consensus 86 ~~~~~vV~ 93 (136)
T d1e0ca2 86 TPDKEIVT 93 (136)
T ss_dssp CTTSEEEE
T ss_pred CCCCceEE
Confidence 88999874
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.38 E-value=3.3e-13 Score=86.68 Aligned_cols=62 Identities=18% Similarity=0.303 Sum_probs=50.5
Q ss_pred CCcceeCHHHHHHHhh--CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLE--SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~--~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
...+.|+++|++++++ ++.+|||||+++||+.|||| ||+|+|.. ++...+.++ .+++++||+
T Consensus 21 ~~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIp--GAi~ip~~-----------~l~~~~~~l~~~~~~~iV~ 85 (136)
T d1yt8a1 21 RHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIP--GGISVPGA-----------ELVLRVAELAPDPRTRVIV 85 (136)
T ss_dssp HCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCT--TCEECCGG-----------GHHHHHHHHCCSTTSEEEE
T ss_pred cCCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecC--Cchhhhhh-----------HHHHHhhcccccccceEEE
Confidence 4567899999999986 35789999999999999999 99999986 566666664 356777764
>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.33 E-value=1.6e-12 Score=84.32 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=58.8
Q ss_pred CcceeCHHHHHHHhh-CCCeEEecCChhhHh------------ccCCCCCCeeeecccc-CCCCCCCCCHHHHHHHHhh-
Q 034227 27 EVITVDVRAAKNLLE-SGYGYLDVRTAEEFK------------EGHVDAAKIFNIPYMF-NTPEGRVKNPDFLKKVRSL- 91 (100)
Q Consensus 27 ~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~------------~ghIp~~gA~~ip~~~-~~~~g~~~~~~~~~~~~~~- 91 (100)
.-..++.+|+.+.++ ++.+|||+|+++||. .|||| ||+|+|+.. ++++|.+.+++.++++...
T Consensus 9 ~~~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIp--gA~~ip~~~~~~~~~~~~~~~~l~~~~~~~ 86 (144)
T d1rhsa2 9 RSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIR--GSVNMPFMNFLTEDGFEKSPEELRAMFEAK 86 (144)
T ss_dssp GGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEET--TCEECCGGGGBCTTSCBCCHHHHHHHHHHT
T ss_pred hHHeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehh--hhhhcchhhhhhhhcccCCHHHHHHHHHHc
Confidence 345789999999888 689999999999995 69999 999999975 4778888888766666433
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
++++++||+
T Consensus 87 gi~~~~~iI~ 96 (144)
T d1rhsa2 87 KVDLTKPLIA 96 (144)
T ss_dssp TCCTTSCEEE
T ss_pred CCCCCCCEEE
Confidence 688888874
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.33 E-value=9.3e-13 Score=86.11 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCCcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhhcCCCCceeC
Q 034227 25 GAEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSLCKEEDRLVV 100 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~~~~~~~viv 100 (100)
|+.+..||++++.++++ ++.+|||||++.||+.|||| ||+|+|+. ++...... ++++++||+
T Consensus 1 qP~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIp--ga~~~~~~-----------~~~~~~~~-~~~~~~vv~ 63 (157)
T d1yt8a3 1 QPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIP--GAAWVLRS-----------QLKQALER-LGTAERYVL 63 (157)
T ss_dssp CCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCT--TCEECCGG-----------GHHHHHHH-HCCCSEEEE
T ss_pred CCCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccc--cceecccc-----------cccccccc-cccCcceee
Confidence 45678999999999998 46899999999999999999 99999985 34444443 677888764
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.28 E-value=3.6e-12 Score=77.25 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=36.6
Q ss_pred ceeCHHHHHHHhh--CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLE--SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~--~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
...|++|+++++. ++.+|||+|++.||+.|||| ||+|+|..
T Consensus 2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIp--gAi~~~~~ 44 (101)
T d1yt8a2 2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPL--FAANLPLS 44 (101)
T ss_dssp EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCT--TCEECCGG
T ss_pred CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCC--Cccccccc
Confidence 4678999998875 46899999999999999999 99999985
>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.25 E-value=7.5e-13 Score=84.11 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=40.8
Q ss_pred CCcceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccC
Q 034227 26 AEVITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN 73 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~ 73 (100)
..++.|+++|+.++++ ++.+|||||+++||+.|||| ||+|+|+..+
T Consensus 5 ~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIp--gAinip~~~~ 51 (132)
T d1t3ka_ 5 RSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIA--GSLHYASGSF 51 (132)
T ss_dssp SSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCC--SSEEECCSSS
T ss_pred cCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCc--ccceeeeecc
Confidence 4578999999999887 56889999999999999999 9999998643
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.23 E-value=4.3e-12 Score=80.63 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=48.5
Q ss_pred CCcceeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCceeC
Q 034227 26 AEVITVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 26 ~~~~~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~viv 100 (100)
..++.|+++++.+++++ +.+|||||+++||+.|||| ||+|+|+. ++....... .+++++||+
T Consensus 20 ~~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghip--gai~~p~~-----------~~~~~~~~~~~~~~~~ivl 85 (130)
T d1yt8a4 20 AGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLP--GSRSTPGG-----------QLVQETDHVASVRGARLVL 85 (130)
T ss_dssp HTCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCT--TCEECCHH-----------HHHHSHHHHCCSBTCEEEE
T ss_pred cCCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccC--Cccccccc-----------ccccccccccCCccceEEe
Confidence 46899999999999973 3689999999999999999 99999985 333333322 467788764
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=2.4e-11 Score=75.41 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=54.8
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHh-----------ccCCCCCCeeeeccccCCCCCCCCCHHHHHH-HHhh-cCC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFNTPEGRVKNPDFLKK-VRSL-CKE 94 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~~~~g~~~~~~~~~~-~~~~-~~~ 94 (100)
..++.+|+.+..+ ++++|||+|+++||. .|||| ||+|+|+.....++.+.+.+..++ +... +++
T Consensus 4 ~~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ip--ga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (120)
T d1urha2 4 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIP--GALNVPWTELVREGELKTTDELDAIFFGRGVSY 81 (120)
T ss_dssp GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCT--TCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCS
T ss_pred HHccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCccccccccccc--ccchhchhhcccccccCCHHHhhhhhhhcccCc
Confidence 3568899988887 679999999999995 69999 999999987766777777654444 4443 688
Q ss_pred CCceeC
Q 034227 95 EDRLVV 100 (100)
Q Consensus 95 ~~~viv 100 (100)
+++||+
T Consensus 82 ~~~ii~ 87 (120)
T d1urha2 82 DKPIIV 87 (120)
T ss_dssp SSCEEE
T ss_pred cCceEE
Confidence 888874
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=6.6e-12 Score=81.09 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=53.3
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCC-hhhHhccCCCCCCeeeeccccC--CC-CCCCCCH-HHHHHHHhh-cCCCCceeC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRT-AEEFKEGHVDAAKIFNIPYMFN--TP-EGRVKNP-DFLKKVRSL-CKEEDRLVV 100 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~-~~e~~~ghIp~~gA~~ip~~~~--~~-~g~~~~~-~~~~~~~~~-~~~~~~viv 100 (100)
..||+++|++.++ ++.+|||+|+ +++|+.|||| ||+|+++... ++ .+++++. +|.+.+.++ ++++++||+
T Consensus 7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIP--gAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVv 83 (143)
T d1uara1 7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIP--GAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL 83 (143)
T ss_dssp GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCT--TCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCC--CcccccccccccccccccchhhHHHHHHhhhhccCCCceEEE
Confidence 4799999999988 5789999995 7899999999 9999987532 22 3456665 455555554 588888875
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]
Probab=99.17 E-value=1.2e-11 Score=79.29 Aligned_cols=64 Identities=20% Similarity=0.243 Sum_probs=49.5
Q ss_pred cCCCcceeCHHHHHHHhh--CCCeEEecCChhhHhccC---CCCCCeeeeccccCCCCCCCCCHHHHHHHHhh-cCCCCc
Q 034227 24 SGAEVITVDVRAAKNLLE--SGYGYLDVRTAEEFKEGH---VDAAKIFNIPYMFNTPEGRVKNPDFLKKVRSL-CKEEDR 97 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~--~~~~lIDvR~~~e~~~gh---Ip~~gA~~ip~~~~~~~g~~~~~~~~~~~~~~-~~~~~~ 97 (100)
+.+.+..||++|+.+++. ++.+|||||+++||+.+| ++ |++|+|... +...+... ++++++
T Consensus 18 a~~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~--~a~~ip~~~-----------l~~~~~~~~~~~~~~ 84 (137)
T d1qxna_ 18 AKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVK--NYKHMSRGK-----------LEPLLAKSGLDPEKP 84 (137)
T ss_dssp HHHSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCS--SEEECCTTT-----------SHHHHHHHCCCTTSC
T ss_pred HHccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhcccccc--ccccCCccc-----------ccccccccccCcccc
Confidence 566789999999999996 469999999999999999 55 688898752 22233332 678888
Q ss_pred eeC
Q 034227 98 LVV 100 (100)
Q Consensus 98 viv 100 (100)
||+
T Consensus 85 ivv 87 (137)
T d1qxna_ 85 VVV 87 (137)
T ss_dssp EEE
T ss_pred eee
Confidence 875
>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=4.1e-11 Score=77.30 Aligned_cols=66 Identities=24% Similarity=0.469 Sum_probs=49.5
Q ss_pred HHHHHHHh---h-CCCeEEecCChhhHh----------------ccCCCCCCeeeeccccC-CCCCCCCCHHHHHHHH-h
Q 034227 33 VRAAKNLL---E-SGYGYLDVRTAEEFK----------------EGHVDAAKIFNIPYMFN-TPEGRVKNPDFLKKVR-S 90 (100)
Q Consensus 33 ~~e~~~~~---~-~~~~lIDvR~~~e~~----------------~ghIp~~gA~~ip~~~~-~~~g~~~~~~~~~~~~-~ 90 (100)
.+++.+.+ + ++.+|||+|+++||. .|||| ||+|+|+..+ +++|.+++++..+++. .
T Consensus 6 ~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIp--gA~nlp~~~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T d1uara2 6 RDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIP--GAKNIPWAKAVNPDGTFKSAEELRALYEP 83 (141)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCT--TCEECCGGGGBCTTSCBCCHHHHHHHHGG
T ss_pred HHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeC--CccccccccccccccccccHHHHHHHHHH
Confidence 34554443 3 468999999999995 79999 9999999764 7788888876555554 3
Q ss_pred h-cCCCCceeC
Q 034227 91 L-CKEEDRLVV 100 (100)
Q Consensus 91 ~-~~~~~~viv 100 (100)
. ++++++||+
T Consensus 84 ~gi~~d~~vV~ 94 (141)
T d1uara2 84 LGITKDKDIVV 94 (141)
T ss_dssp GTCCTTSEEEE
T ss_pred hCCCCCCeEEE
Confidence 3 688898874
>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]
Probab=99.14 E-value=3.9e-11 Score=75.28 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=38.8
Q ss_pred ceeCHHHHHHHhh-CCCeEEecCChhhHhccCCCCCCeeeeccccC
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVRTAEEFKEGHVDAAKIFNIPYMFN 73 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~ 73 (100)
..|+++|++++++ ++.+|||+|+++||+.|||| ||+|+|+...
T Consensus 9 ~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIp--gA~~~~~~~~ 52 (135)
T d1e0ca1 9 LVIEPADLQARLSAPELILVDLTSAARYAEGHIP--GARFVDPKRT 52 (135)
T ss_dssp SEECHHHHHTTTTCTTEEEEECSCHHHHHHCBST--TCEECCGGGG
T ss_pred cEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCc--cccccchhhh
Confidence 4689999999998 57899999999999999999 9999998654
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=4.8e-11 Score=75.19 Aligned_cols=43 Identities=7% Similarity=0.252 Sum_probs=38.4
Q ss_pred eeCHHHHHHHhhC---CCeEEecCChhhHhccCCCCCCeeeeccccCC
Q 034227 30 TVDVRAAKNLLES---GYGYLDVRTAEEFKEGHVDAAKIFNIPYMFNT 74 (100)
Q Consensus 30 ~i~~~e~~~~~~~---~~~lIDvR~~~e~~~ghIp~~gA~~ip~~~~~ 74 (100)
.||++|+.+++++ +.+|||+|+++||+.|||| ||+|+|...+.
T Consensus 2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~--gAinip~~~l~ 47 (135)
T d2gwfa1 2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCIL--HSLSVPEEAIS 47 (135)
T ss_dssp EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBT--TCEECCGGGCC
T ss_pred eECHHHHHHHHhcCCCCEEEEEecCCccccCCccC--CeEEeCHHHcc
Confidence 6899999999972 4889999999999999999 99999987654
>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.6e-11 Score=78.50 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=53.4
Q ss_pred ceeCHHHHHHHhh-CCCeEEecC----------ChhhHhccCCCCCCeeeeccccC-CCC----CCCCCH-HHHHHHHhh
Q 034227 29 ITVDVRAAKNLLE-SGYGYLDVR----------TAEEFKEGHVDAAKIFNIPYMFN-TPE----GRVKNP-DFLKKVRSL 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~-~~~~lIDvR----------~~~e~~~ghIp~~gA~~ip~~~~-~~~----g~~~~~-~~~~~~~~~ 91 (100)
..||++++.+.++ ++.+|||+| ..++|+.|||| ||+|+++..+ +.+ +.++++ ++.+.+.++
T Consensus 3 ~lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIP--GAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 80 (147)
T d1urha1 3 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIP--GAVFFDIEALSDHTSPLPHMLPRPETFAVAMREL 80 (147)
T ss_dssp CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCT--TCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHT
T ss_pred ccCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCcc--ccEEeehhhhccccccccccCCCHHHHHHHHHHh
Confidence 4589999999998 589999999 35689999999 9999998654 332 355555 555555665
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
++++++||+
T Consensus 81 Gi~~~~~vVv 90 (147)
T d1urha1 81 GVNQDKHLIV 90 (147)
T ss_dssp TCCTTSEEEE
T ss_pred CcCCCCeEEE
Confidence 688888875
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.01 E-value=3.5e-10 Score=73.25 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=52.8
Q ss_pred ceeCHHHHHHHhhC-----CCeEEecC--------ChhhHhccCCCCCCeeeeccccC-CC----CCCCCCH-HHHHHHH
Q 034227 29 ITVDVRAAKNLLES-----GYGYLDVR--------TAEEFKEGHVDAAKIFNIPYMFN-TP----EGRVKNP-DFLKKVR 89 (100)
Q Consensus 29 ~~i~~~e~~~~~~~-----~~~lIDvR--------~~~e~~~ghIp~~gA~~ip~~~~-~~----~g~~~~~-~~~~~~~ 89 (100)
..||+++|.+.++. +.+|||+| ..++|+.|||| ||+|++++.+ .+ .+.++.. .|.+.+.
T Consensus 8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIP--GAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (149)
T d1rhsa1 8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVP--GASFFDIEECRDKASPYEVMLPSEAGFADYVG 85 (149)
T ss_dssp SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCT--TCEECCTTTSSCTTSSSSSCCCCHHHHHHHHH
T ss_pred CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhccc--CceeccHHhhcccccchhhhhhhhHHHHHHHh
Confidence 56899999999962 57999999 46799999999 9999998754 22 2455554 5666666
Q ss_pred hh-cCCCCceeC
Q 034227 90 SL-CKEEDRLVV 100 (100)
Q Consensus 90 ~~-~~~~~~viv 100 (100)
.. ++++++||+
T Consensus 86 ~~Gi~~~~~vVv 97 (149)
T d1rhsa1 86 SLGISNDTHVVV 97 (149)
T ss_dssp HTTCCTTCEEEE
T ss_pred hhhccCCceeEE
Confidence 65 678888774
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]
Probab=98.85 E-value=1.4e-09 Score=71.23 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=52.2
Q ss_pred ceeCHHHHHHHhhCCCeEEecC--------ChhhHhccCCCCCCeeeeccccC-CC-----CC--CCCCH-HHHHHHHhh
Q 034227 29 ITVDVRAAKNLLESGYGYLDVR--------TAEEFKEGHVDAAKIFNIPYMFN-TP-----EG--RVKNP-DFLKKVRSL 91 (100)
Q Consensus 29 ~~i~~~e~~~~~~~~~~lIDvR--------~~~e~~~ghIp~~gA~~ip~~~~-~~-----~g--~~~~~-~~~~~~~~~ 91 (100)
..||++++.+.++ +.+|||+| ..++|..|||| ||++++++.. +. .| +++++ +|.+.+.++
T Consensus 8 ~lvs~~~L~~~l~-d~~iiD~r~~l~~~~~g~~~Y~~gHIP--GA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~l 84 (156)
T d1okga1 8 VFLDPSEVADHLA-EYRIVDCRYSLKIKDHGSIQYAKEHVK--SAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMAN 84 (156)
T ss_dssp CEECHHHHTTCGG-GSEEEECCCCSSSTTTTTTHHHHCEET--TCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHT
T ss_pred cEeCHHHHHHhcC-CCEEEEeeccCCCCcchHHHHHHcCCC--CCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhc
Confidence 3699999988775 58999999 57899999999 9999987532 11 12 35554 677777776
Q ss_pred -cCCCCceeC
Q 034227 92 -CKEEDRLVV 100 (100)
Q Consensus 92 -~~~~~~viv 100 (100)
++++++||+
T Consensus 85 GI~~~~~VVv 94 (156)
T d1okga1 85 GMAGELPVLC 94 (156)
T ss_dssp TCSSSSCEEE
T ss_pred cccCCceEEE
Confidence 688988875
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=7.9e-10 Score=72.37 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=38.9
Q ss_pred CCCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeecc
Q 034227 25 GAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPY 70 (100)
Q Consensus 25 ~~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~ 70 (100)
....+.|+++++.+++++ +++|||||++.||+.|||+ ||+|+|.
T Consensus 19 ~~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~--gAinip~ 69 (161)
T d1c25a_ 19 HQDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIK--GAVNLHM 69 (161)
T ss_dssp CTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEET--TCEECCS
T ss_pred CCCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcC--CcEEcCc
Confidence 356788999999999862 4789999999999999999 9999985
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.6e-09 Score=69.56 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=35.9
Q ss_pred ceeCHHHHHHHhh---CCCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 29 ITVDVRAAKNLLE---SGYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 29 ~~i~~~e~~~~~~---~~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
..+|++++++.++ ++.+|||+|+++||+.|||| ||+|+|+.
T Consensus 16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~--gAini~~~ 59 (154)
T d1hzma_ 16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIE--SAINVAIP 59 (154)
T ss_dssp SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSS--SCCCCCCS
T ss_pred CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCC--CCcccCcH
Confidence 4588999999886 35899999999999999999 99999864
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.8e-09 Score=71.45 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=40.2
Q ss_pred cCCCcceeCHHHHHHHhhC-------CCeEEecCChhhHhccCCCCCCeeeeccc
Q 034227 24 SGAEVITVDVRAAKNLLES-------GYGYLDVRTAEEFKEGHVDAAKIFNIPYM 71 (100)
Q Consensus 24 ~~~~~~~i~~~e~~~~~~~-------~~~lIDvR~~~e~~~ghIp~~gA~~ip~~ 71 (100)
....++.|+++++.+++++ +++|||+|++.||..|||+ ||+|+|..
T Consensus 18 ~~~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~--gAiNi~~~ 70 (174)
T d1ymka1 18 KHQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIK--TAVNLPLE 70 (174)
T ss_dssp SSTTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEET--TCEECCSH
T ss_pred ccCCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcC--CccccCch
Confidence 3456888999999999963 3799999999999999999 99999974
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}
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class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]
Probab=98.74 E-value=2.7e-09 Score=68.26 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=39.2
Q ss_pred hhCCCeEEecCChhhHh-----------ccCCCCCCeeeeccccC-CC---CCCCCCHHHH-HHHHhh------cCCCCc
Q 034227 40 LESGYGYLDVRTAEEFK-----------EGHVDAAKIFNIPYMFN-TP---EGRVKNPDFL-KKVRSL------CKEEDR 97 (100)
Q Consensus 40 ~~~~~~lIDvR~~~e~~-----------~ghIp~~gA~~ip~~~~-~~---~g~~~~~~~~-~~~~~~------~~~~~~ 97 (100)
+.++.+|||+|+++||. .|||| ||+|+|+..+ .. ...+++++.+ +.+.+. ++++++
T Consensus 9 ~~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIp--gAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 86 (139)
T d1okga2 9 IPPQAIITDARSADRFASTVRPYAADKMPGHIE--GARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSS 86 (139)
T ss_dssp SCTTCCEEECSCHHHHTCCSSCCTTCSSSSCST--TCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTT
T ss_pred CCCCeEEEeCCCHHHhCCcCCCcccCCcCceeC--CCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCe
Confidence 34678999999999996 79999 9999998753 22 2345555433 333322 345567
Q ss_pred eeC
Q 034227 98 LVV 100 (100)
Q Consensus 98 viv 100 (100)
||+
T Consensus 87 vV~ 89 (139)
T d1okga2 87 FVF 89 (139)
T ss_dssp SEE
T ss_pred EEE
Confidence 663