Citrus Sinensis ID: 034231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccccccEEEEEEcccccccccEEcccccccccEEEEcccEEEEEEEEEEEEEEccEEEccccEEEEEEccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccccccccEEEEEEccccccccccEcccccccccEEEEcccEEEEEEEEEEEEEEcccEcccccccEccccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlkvvcrkkerdrdhknnihpykvveitpppkclgircfppnlqcgesvtieGQAYTISAVTHRYQlrkgkyepsekrldvLSSSRYILNLYLENLLEQS
Flexible Loop (DISEMBL)
mlkvvcrkkerdrdhknnihpykvveitpppkCLGIRCFPPNLQCGESVTIEGQAYTISAVTHryqlrkgkyepsekrldvlsssrYILNLYLENLLEQS
Low Complexity Region (SEG)
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRyilnlylenlleQS
Disordered region (IsUnstruct)
******************IHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKY*****RLDVLSSSRYILNLYLENL****
Disordered Region (DISOPRED)
**********************KVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLL***
Disordered Region (DISEMBL)
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Disordered Region (DISPRO)
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQ*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
225452332	110	PREDICTED: uncharacterized protein LOC10	0.95	0.863	0.838	6e-42
242076274	120	hypothetical protein SORBIDRAFT_06g02053	0.99	0.825	0.761	2e-40
259490454	118	uncharacterized protein LOC100303883 [Ze	0.99	0.838	0.757	5e-40
326518965	173	predicted protein [Hordeum vulgare subsp	0.99	0.572	0.754	2e-39
326508454	157	predicted protein [Hordeum vulgare subsp	0.99	0.630	0.754	2e-39
356558849	115	PREDICTED: uncharacterized protein LOC10	0.98	0.852	0.81	2e-39
351723319	115	uncharacterized protein LOC100305736 [Gl	0.98	0.852	0.8	5e-39
194698056	261	unknown [Zea mays]	0.88	0.337	0.818	3e-38
22327475	123	uncharacterized protein [Arabidopsis tha	0.97	0.788	0.737	1e-36
145334677	114	uncharacterized protein [Arabidopsis tha	0.97	0.850	0.737	2e-36

>gi|225452332|ref|XP_002273651.1| PREDICTED: uncharacterized protein LOC100262706 [Vitis vinifera] gi|296087605|emb|CBI34861.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/99 (83%), Positives = 91/99 (91%), Gaps = 4/99 (4%)

Query: 2   LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
           L++ CRKK+R+RDH    HPYKV+EITPPPK LG+RCFP NLQCGESVTIEGQAYTISAV
Sbjct: 16  LQIFCRKKDRERDH----HPYKVIEITPPPKNLGVRCFPSNLQCGESVTIEGQAYTISAV 71

Query: 62  THRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           THRYQLRKGKYEPSEKRLDVLS+ RYILNLYLENLL+QS
Sbjct: 72  THRYQLRKGKYEPSEKRLDVLSTGRYILNLYLENLLQQS 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242076274|ref|XP_002448073.1| hypothetical protein SORBIDRAFT_06g020530 [Sorghum bicolor] gi|241939256|gb|EES12401.1| hypothetical protein SORBIDRAFT_06g020530 [Sorghum bicolor]

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 92/105 (87%), Gaps = 6/105 (5%)

Query: 2   LKVVCRK------KERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQA 55
           L VVCRK      +ER+RD K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQA
Sbjct: 16  LAVVCRKNKDGRDRERERDGKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQA 75

Query: 56  YTISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           YT+SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL+NLL+QS
Sbjct: 76  YTVSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLQNLLDQS 120

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259490454|ref|NP_001158949.1| uncharacterized protein LOC100303883 [Zea mays] gi|195610298|gb|ACG26979.1| hypothetical protein [Zea mays] gi|413918697|gb|AFW58629.1| hypothetical protein ZEAMMB73_224163 [Zea mays]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 91/103 (88%), Gaps = 4/103 (3%)

Query: 2   LKVVCRK----KERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYT 57
             VVCRK    ++R+RD K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQAYT
Sbjct: 16  FAVVCRKNRDGRDRERDGKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQAYT 75

Query: 58  ISAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           +SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL+NLL+QS
Sbjct: 76  VSAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLQNLLDQS 118

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518965|dbj|BAJ92643.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 92/102 (90%), Gaps = 3/102 (2%)

Query: 2   LKVVCRKKERDRD---HKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTI 58
           L V+CRKK+RDR+    K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQAYT+
Sbjct: 72  LSVLCRKKDRDRELEREKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQAYTV 131

Query: 59  SAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL++LL++S
Sbjct: 132 SAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLDSLLDKS 173

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508454|dbj|BAJ99494.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 92/102 (90%), Gaps = 3/102 (2%)

Query: 2   LKVVCRKKERDRD---HKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTI 58
           L V+CRKK+RDR+    K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQAYT+
Sbjct: 56  LSVLCRKKDRDRELEREKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQAYTV 115

Query: 59  SAVTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           SAVTHRYQLRKG+YEPSEKRLDVLS+ RYILNLYL++LL++S
Sbjct: 116 SAVTHRYQLRKGRYEPSEKRLDVLSTGRYILNLYLDSLLDKS 157

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558849|ref|XP_003547715.1| PREDICTED: uncharacterized protein LOC100812628 [Glycine max]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 91/100 (91%), Gaps = 2/100 (2%)

Query: 2   LKVVC-RKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISA 60
            +V C RK++RDR+ + +I PYKVVEITPPPK LG+RC PPNLQCGESVTIEGQAYTISA
Sbjct: 17  FEVSCSRKRDRDRE-RGSILPYKVVEITPPPKSLGVRCLPPNLQCGESVTIEGQAYTISA 75

Query: 61  VTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           VTHRYQLRKGKYEPSEKRLDVLS+ RY++NLYLENLLEQS
Sbjct: 76  VTHRYQLRKGKYEPSEKRLDVLSTGRYLVNLYLENLLEQS 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723319|ref|NP_001235995.1| uncharacterized protein LOC100305736 [Glycine max] gi|255626475|gb|ACU13582.1| unknown [Glycine max]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 91/100 (91%), Gaps = 2/100 (2%)

Query: 2   LKVVC-RKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISA 60
            +V C RK++RDR+ + +I PYKVVEITPPPK LG+RC PPNLQCGE+VTIEGQAYTISA
Sbjct: 17  FEVSCNRKRDRDRE-RGSILPYKVVEITPPPKSLGVRCLPPNLQCGENVTIEGQAYTISA 75

Query: 61  VTHRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           VTHRYQLRKGKYEPSEKRLDVLS+ RY++NLYLENLLEQS
Sbjct: 76  VTHRYQLRKGKYEPSEKRLDVLSTGRYLVNLYLENLLEQS 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194698056|gb|ACF83112.1| unknown [Zea mays]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 82/88 (93%)

Query: 13  RDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKY 72
           RD K + HP+KVVEITPPP+CLG+RCFP N+ CGESVTIEGQAYT+SAVTHRYQLRKG+Y
Sbjct: 174 RDGKEHKHPFKVVEITPPPRCLGVRCFPTNIHCGESVTIEGQAYTVSAVTHRYQLRKGRY 233

Query: 73  EPSEKRLDVLSSSRYILNLYLENLLEQS 100
           EPSEKRLDVLS+ RYILNLYL+NLL+QS
Sbjct: 234 EPSEKRLDVLSTGRYILNLYLQNLLDQS 261

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327475|ref|NP_198866.2| uncharacterized protein [Arabidopsis thaliana] gi|17644175|gb|AAL38785.1| unknown protein [Arabidopsis thaliana] gi|21436195|gb|AAM51385.1| unknown protein [Arabidopsis thaliana] gi|332007171|gb|AED94554.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 86/99 (86%), Gaps = 2/99 (2%)

Query: 2   LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
           L++ CRKKE+ RD  +  +PYKV+EITPPPK LGIRC P NLQCGE+V IEGQ YTISAV
Sbjct: 27  LQINCRKKEKGRDQSH--YPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAV 84

Query: 62  THRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           THRYQLRKGKYEPSE+RLDVLS++RY+LNLY +NLL+ S
Sbjct: 85  THRYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334677|ref|NP_001078684.1| uncharacterized protein [Arabidopsis thaliana] gi|332007172|gb|AED94555.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 73/99 (73%), Positives = 86/99 (86%), Gaps = 2/99 (2%)

Query: 2   LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
           L++ CRKKE+ RD  +  +PYKV+EITPPPK LGIRC P NLQCGE+V IEGQ YTISAV
Sbjct: 18  LQINCRKKEKGRDQSH--YPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAV 75

Query: 62  THRYQLRKGKYEPSEKRLDVLSSSRYILNLYLENLLEQS 100
           THRYQLRKGKYEPSE+RLDVLS++RY+LNLY +NLL+ S
Sbjct: 76  THRYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS 114

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2168723	123	AT5G40500 "AT5G40500" [Arabido	0.83	0.674	0.752	4.2e-31

TAIR|locus:2168723 AT5G40500 "AT5G40500" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 64/85 (75%), Positives = 74/85 (87%)

Query:     2 LKVVCRKKERDRDHKNNIHPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAV 61
             L++ CRKKE+ RD  +  +PYKV+EITPPPK LGIRC P NLQCGE+V IEGQ YTISAV
Sbjct:    27 LQINCRKKEKGRDQSH--YPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAV 84

Query:    62 THRYQLRKGKYEPSEKRLDVLSSSR 86
             THRYQLRKGKYEPSE+RLDVLS++R
Sbjct:    85 THRYQLRKGKYEPSERRLDVLSAAR 109


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        88   0.00091  102 3  11 22  0.48    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.20u 0.15s 11.35t   Elapsed:  00:00:00
  Total cpu time:  11.20u 0.15s 11.35t   Elapsed:  00:00:00
  Start:  Fri May 10 18:14:27 2013   End:  Fri May 10 18:14:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020661001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (108 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF13856	95	Gifsy-2: ATP-binding sugar transporter from pro-ph	92.55
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	85.59
PRK10377	120	PTS system glucitol/sorbitol-specific transporter	83.64
PF05954	292	Phage_GPD: Phage late control gene D protein (GPD)	82.06
TIGR00849	121	gutA PTS system, glucitol/sorbitol-specific IIA co	81.96

>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A

Probab=92.55  E-value=0.32  Score=32.53  Aligned_cols=32  Identities=31%  Similarity=0.659  Sum_probs=21.1

Q ss_pred             EcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 034231           38 CFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP   74 (100)
Q Consensus        38 ~Lp~~pqpG~~le~eg~sY~Vl~rrHrYqLr~GrY~l   74 (100)
                      .+++ |++|+.|+++|++|+|..    ++...|.|++
T Consensus        62 d~~~-P~~gd~v~~dG~~y~V~~----~~~~~G~~~I   93 (95)
T PF13856_consen   62 DYPK-PRRGDRVVIDGESYTVTR----FQEEDGMYVI   93 (95)
T ss_dssp             S------TT-EEEETTEEEEEEE----EEEETTEEEE
T ss_pred             CCCC-CCCCCEEEECCeEEEEeE----EecCCCEEEE
Confidence            3555 999999999999999974    5566687765

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=85.59  E-value=1.9  Score=26.86  Aligned_cols=23  Identities=26%  Similarity=0.510  Sum_probs=19.4

Q ss_pred             CCCCCeEEEcCeEEEEEEEEEEE
Q 034231           43 LQCGESVTIEGQAYTISAVTHRY   65 (100)
Q Consensus        43 pqpG~~le~eg~sY~Vl~rrHrY   65 (100)
                      ..+|..|+++|+-|.|++..|.=
T Consensus         5 lr~G~~i~~~g~~~~V~~~~~~k   27 (58)
T PF08207_consen    5 LRKGMVIEIDGEPYVVLDFQHVK   27 (58)
T ss_dssp             --TTSEEEETTEEEEEEEEEEEC
T ss_pred             ccCCCEEEECCEEEEEEEEEEEC
Confidence            46899999999999999998864

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PRK10377 PTS system glucitol/sorbitol-specific transporter subunit IIA; Provisional

Probab=83.64  E-value=1.8  Score=31.12  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             EcCCCCCCCCeEEEcCeEEEEEEE
Q 034231           38 CFPPNLQCGESVTIEGQAYTISAV   61 (100)
Q Consensus        38 ~Lp~~pqpG~~le~eg~sY~Vl~r   61 (100)
                      .++...++|+.+.++++.|.|..+
T Consensus        47 ~~~~~i~~Gd~l~i~~~~Y~ItaV   70 (120)
T PRK10377         47 ELKGALQPGLQFELGQHRYPVTAV   70 (120)
T ss_pred             cccCccCCCCEEEECCEEEEEEEE
Confidence            456778999999999999999876

>PF05954 Phage_GPD: Phage late control gene D protein (GPD); PDB: 2P5Z_X 3D37_A 1WRU_A 3CDD_E

Probab=82.06  E-value=1.6  Score=32.31  Aligned_cols=24  Identities=38%  Similarity=0.696  Sum_probs=21.5

Q ss_pred             CCCCCeEEEcC-------eEEEEEEEEEEEE
Q 034231           43 LQCGESVTIEG-------QAYTISAVTHRYQ   66 (100)
Q Consensus        43 pqpG~~le~eg-------~sY~Vl~rrHrYq   66 (100)
                      ..||..|++.|       ..|+|.+++|++.
T Consensus       259 l~~G~~v~l~~~~~~~~~g~y~I~~V~h~~~  289 (292)
T PF05954_consen  259 LRPGRRVTLSGHPGGEFDGEYLITEVEHSFS  289 (292)
T ss_dssp             B-TTEEEEEEETTTTCEEEEEEEEEEEEEEE
T ss_pred             ECcCCEEEEcCCcCccCCCcEEEEEEEEEEE
Confidence            69999999999       7899999999987

>TIGR00849 gutA PTS system, glucitol/sorbitol-specific IIA component

Probab=81.96  E-value=2.3  Score=30.65  Aligned_cols=24  Identities=33%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             EcCCCCCCCCeEEEcCeEEEEEEE
Q 034231           38 CFPPNLQCGESVTIEGQAYTISAV   61 (100)
Q Consensus        38 ~Lp~~pqpG~~le~eg~sY~Vl~r   61 (100)
                      .+....++|+.+.++++.|.|..+
T Consensus        47 ~~~~~i~~Gd~l~i~~~~Y~ItaV   70 (121)
T TIGR00849        47 EVKGTLKPGQVFMIGGIAYPVTAV   70 (121)
T ss_pred             cccCCcCCCCEEEECCEEEEEEEE
Confidence            345568999999999999999876

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family consists only of glucitol-specific transporters, and occur both in Gram-negative and Gram-positive bacteria.The system in E.Coli consists of a IIA protein, and a IIBC protein. This family is specific for the IIA component.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2pp6_A	102	Gifsy-2 prophage ATP-binding sugar transporter-LI	88.57
2f9h_A	129	PTS system, IIA component; alpha-beta structure, b	80.62

>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2

Probab=88.57  E-value=1.1  Score=31.06  Aligned_cols=51  Identities=16%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             cceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEe
Q 034231           20 HPYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEP   74 (100)
Q Consensus        20 lp~EV~~~t~p~r~LG~~~Lp~~pqpG~~le~eg~sY~Vl~rrHrYqLr~GrY~l   74 (100)
                      .|-|.--++++.++|=.+.=.--|+-|+-|..+|+.|+|.    ||++..|+.++
T Consensus        41 ~~~emg~lsG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vt----r~~~~ngk~~i   91 (102)
T 2pp6_A           41 FLAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQL   91 (102)
T ss_dssp             GTC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEE
T ss_pred             hHHHhCCccCCceEEEEecCCcccCCCCEEEEcCcEEEEE----EEEEECCcEEE
Confidence            4445555688888887774445599999999999999995    68888999875

>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1

Probab=80.62  E-value=1.7  Score=30.58  Aligned_cols=21  Identities=33%  Similarity=0.513  Sum_probs=19.5

Q ss_pred             CCCCCCCeEEEcCeEEEEEEE
Q 034231           41 PNLQCGESVTIEGQAYTISAV   61 (100)
Q Consensus        41 ~~pqpG~~le~eg~sY~Vl~r   61 (100)
                      ..+++|+++.++++.|.|..+
T Consensus        53 ~~i~~Gd~l~i~~~~Y~ItaV   73 (129)
T 2f9h_A           53 VTLAEGDHLKIGDTNYTITKV   73 (129)
T ss_dssp             CCCCTTCEEEETTEEEEEEEE
T ss_pred             CCcCCCCEEEECCEEEEEEEE
Confidence            689999999999999999876

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d2pp6a1	93	Gifsy-2 prophage protein STM1035 {Salmonella typhi	85.03
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	83.3

>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Phage tail proteins
superfamily: Phage tail proteins
family: gpFII-like
domain: Gifsy-2 prophage protein STM1035
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.03  E-value=1.1  Score=28.98  Aligned_cols=51  Identities=16%  Similarity=0.152  Sum_probs=33.8

Q ss_pred             ceEEEEeCCCCceeeeEEcCCCCCCCCeEEEcCeEEEEEEEEEEEEEecceEEec
Q 034231           21 PYKVVEITPPPKCLGIRCFPPNLQCGESVTIEGQAYTISAVTHRYQLRKGKYEPS   75 (100)
Q Consensus        21 p~EV~~~t~p~r~LG~~~Lp~~pqpG~~le~eg~sY~Vl~rrHrYqLr~GrY~l~   75 (100)
                      |-|.--++++.++|=...=.--|.-|+-|..+|+.|+|.    ||+.-+|++++.
T Consensus        39 ~~em~al~G~~rsLvvFSs~ykPrr~D~Vv~~G~~~~VT----r~~~~ngk~~i~   89 (93)
T d2pp6a1          39 LAELGPVEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT----RIRRFNGKPQLT   89 (93)
T ss_dssp             TC--------CEEEEECCSSCCCCTTCEEEETTEEEEEE----EEEEETTEEEEE
T ss_pred             hhhcCCccCCceEEEEEcCCcccCCCCeEEecCcEEEEE----EEEEECCcEEEE
Confidence            445555688888887753333399999999999999995    678889998863

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=83.30  E-value=0.77  Score=26.80  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=23.8

Q ss_pred             CCCCCCeEEEcCeEEEEEEEEEEEEEecc
Q 034231           42 NLQCGESVTIEGQAYTISAVTHRYQLRKG   70 (100)
Q Consensus        42 ~pqpG~~le~eg~sY~Vl~rrHrYqLr~G   70 (100)
                      ...+|..|+++|+-|.|++..|+=.=++|
T Consensus         6 elkkG~~i~~~g~~~~V~~~~~~kpgkg~   34 (63)
T d1ueba1           6 DLRPGTKVKMDGGLWECVEYQHQKLGRGG   34 (63)
T ss_dssp             GCCTTCEEEETTEEEEEEEEEEEEETTSC
T ss_pred             HCCCCCEEEECCEEEEEEEEEEEcCCCCc
Confidence            35789999999999999999998554443