Citrus Sinensis ID: 034233

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQLEDPERKHKKYKKKKKLDDVGIIQGKPII
Secondary Structure (PSIPRED)
ccHHHHHHHccccccEEEEEcccccccccEEccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccHEHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MPVYTIAATAEVEGSVVGkllgqdnpnlgydatkgEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLregqledperkhkkykkkkklddvgiiqgkpii
Flexible Loop (DISEMBL)
MPVYTIAATAEVEGSVVGkllgqdnpnlgydATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNklregqledperkhkkykkkkklddvgiiqgkpii
Low Complexity Region (SEG)
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQLEDPERkhkkykkkkkLDDVGIIQGKPII
Disordered region (IsUnstruct)
***YTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKL*********************************
Disordered Region (DISOPRED)
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQ**********************IQGK***
Disordered Region (DISEMBL)
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQL***************LDDVGIIQGKPII
Disordered Region (DISPRO)
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQLEDPER************D***IQ****I
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATSMFLNKLREGQLEDPERKHKKYKKKKKLDDVGIIQGKPII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q8L7B5	585	Chaperonin CPN60-like 1,	yes	no	0.61	0.104	0.709	4e-18
P29197	577	Chaperonin CPN60, mitocho	no	no	0.61	0.105	0.693	7e-18
Q05046	575	Chaperonin CPN60-2, mitoc	N/A	no	0.61	0.106	0.693	2e-17
P35480	587	Chaperonin CPN60, mitocho	N/A	no	0.61	0.103	0.661	5e-17
Q05045	575	Chaperonin CPN60-1, mitoc	N/A	no	0.61	0.106	0.661	1e-16
P29185	577	Chaperonin CPN60-1, mitoc	N/A	no	0.61	0.105	0.645	7e-16
Q43298	576	Chaperonin CPN60-2, mitoc	N/A	no	0.61	0.105	0.629	1e-14
Q93ZM7	572	Chaperonin CPN60-like 2,	no	no	0.63	0.110	0.578	1e-13
Q94596	589	Chaperonin HSP60, mitocho	yes	no	0.92	0.156	0.333	2e-10
A5EET6	541	60 kDa chaperonin 2 OS=Br	yes	no	0.61	0.112	0.532	1e-09

>sp|Q8L7B5|CH60B_ARATH Chaperonin CPN60-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g33210 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 481 PVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.
Arabidopsis thaliana (taxid: 3702)

>sp|P29197|CH60A_ARATH Chaperonin CPN60, mitochondrial OS=Arabidopsis thaliana GN=CPN60 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 480 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 539

Query: 61  SM 62
           S+
Sbjct: 540 SV 541

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PV+TIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 481 PVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Cucurbita maxima (taxid: 3661)

>sp|P35480|CH60_BRANA Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL  DNP+LGYDA KGEYVD++K GI+DP+KVIR   + A 
Sbjct: 484 PVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYVDMVKSGIIDPVKVIRTALVDAA 543

Query: 61  SM 62
           S+
Sbjct: 544 SV 545

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Brassica napus (taxid: 3708)

>sp|Q05045|CH61_CUCMA Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PV+TIA+ A VEG+VV GKLL QD+P+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 481 PVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Cucurbita maxima (taxid: 3661)

>sp|P29185|CH61_MAIZE Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PV+TIA+ A VEG+VV GKLL Q+N +LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 483 PVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAA 542

Query: 61  SM 62
           S+
Sbjct: 543 SV 544

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Zea mays (taxid: 4577)

>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial OS=Zea mays GN=CPN60II PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PV+TIA+ A VEG+VV GKLL Q N +LGYDA K EYVD++K GI+DPLKVIR   + A 
Sbjct: 483 PVHTIASNAGVEGAVVVGKLLEQGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAA 542

Query: 61  SM 62
           S+
Sbjct: 543 SV 544

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Zea mays (taxid: 4577)

>sp|Q93ZM7|CH60C_ARATH Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P +TIAA A  +GS VVGKLL QD+ N G+DA KG+YVD++K GI+DP+KVIR     A 
Sbjct: 480 PAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAA 539

Query: 61  SMFL 64
           S+ L
Sbjct: 540 SVSL 543

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94596|CH60_LEIMA Chaperonin HSP60, mitochondrial OS=Leishmania major GN=HSP60 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 19/111 (17%)

Query: 1   MPVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           +P   IA  A VEGSVV GK+L + +P+ GY+A  GEYV++ + GI+DP+KV++   + A
Sbjct: 467 LPARYIANNAGVEGSVVAGKVLARKDPSFGYNAQTGEYVNMFEAGIIDPMKVVKSAVVNA 526

Query: 60  TS---MFLN---------------KLREGQLEDPERKHKKYKKKKKLDDVG 92
            S   M +                ++ +  +ED E+K    K +K++++ G
Sbjct: 527 CSVAGMMITTEAAVVEKDLLGREKRIEDEGMEDKEKKRSVDKLRKQVNEAG 577

Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix.

Leishmania major (taxid: 5664)

>sp|A5EET6|CH602_BRASB 60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL2 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A VEGS VVGK+L   +P  G+DA K EYVDLI+ GI+DP KV+R     A 
Sbjct: 450 PIRQIADNAGVEGSIVVGKILENRSPTFGFDAQKEEYVDLIEAGIVDPAKVVRTALQDAA 509

Query: 61  SM 62
           S+
Sbjct: 510 SV 511

Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.

Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) (taxid: 288000)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
255560267	575	chaperonin-60kD, ch60, putative [Ricinus	0.62	0.107	0.698	7e-17
30685604	585	chaperonin CPN60-like 1 [Arabidopsis tha	0.61	0.104	0.709	2e-16
334184654	580	chaperonin CPN60-like 1 [Arabidopsis tha	0.61	0.105	0.709	2e-16
2924773	524	mitochondrial chaperonin (HSP60) [Arabid	0.61	0.116	0.709	2e-16
297835484	577	hypothetical protein ARALYDRAFT_898985 [	0.61	0.105	0.693	2e-16
15229559	577	chaperonin CPN60 [Arabidopsis thaliana]	0.61	0.105	0.693	3e-16
16221	577	chaperonin hsp60 [Arabidopsis thaliana]	0.61	0.105	0.693	3e-16
297826771	581	hypothetical protein ARALYDRAFT_902390 [	0.61	0.104	0.693	3e-16
24637539	545	heat shock protein 60 [Prunus dulcis]	0.62	0.113	0.698	4e-16
461736	575	RecName: Full=Chaperonin CPN60-2, mitoch	0.61	0.106	0.693	7e-16

>gi|255560267|ref|XP_002521151.1| chaperonin-60kD, ch60, putative [Ricinus communis] gi|223539720|gb|EEF41302.1| chaperonin-60kD, ch60, putative [Ricinus communis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%), Gaps = 1/63 (1%)

Query: 1   MPVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           MPV+TIAA A VEG+VV GKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A
Sbjct: 480 MPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDA 539

Query: 60  TSM 62
            S+
Sbjct: 540 ASV 542

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685604|ref|NP_850203.1| chaperonin CPN60-like 1 [Arabidopsis thaliana] gi|75301136|sp|Q8L7B5.1|CH60B_ARATH RecName: Full=Chaperonin CPN60-like 1, mitochondrial; AltName: Full=HSP60-like 1; Flags: Precursor gi|22531044|gb|AAM97026.1| mitochondrial chaperonin HSP60 [Arabidopsis thaliana] gi|23197790|gb|AAN15422.1| mitochondrial chaperonin HSP60 [Arabidopsis thaliana] gi|51968972|dbj|BAD43178.1| mitochondrial chaperonin (HSP60) [Arabidopsis thaliana] gi|330253705|gb|AEC08799.1| chaperonin CPN60-like 1 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 481 PVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184654|ref|NP_001189665.1| chaperonin CPN60-like 1 [Arabidopsis thaliana] gi|330253706|gb|AEC08800.1| chaperonin CPN60-like 1 [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 476 PVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 535

Query: 61  SM 62
           S+
Sbjct: 536 SV 537

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2924773|gb|AAC04902.1| mitochondrial chaperonin (HSP60) [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 420 PVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 479

Query: 61  SM 62
           S+
Sbjct: 480 SV 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835484|ref|XP_002885624.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata] gi|297331464|gb|EFH61883.1| hypothetical protein ARALYDRAFT_898985 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 480 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAA 539

Query: 61  SM 62
           S+
Sbjct: 540 SV 541

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229559|ref|NP_189041.1| chaperonin CPN60 [Arabidopsis thaliana] gi|12644189|sp|P29197.2|CH60A_ARATH RecName: Full=Chaperonin CPN60, mitochondrial; AltName: Full=HSP60; Flags: Precursor gi|9294668|dbj|BAB03017.1| chaperonin hsp60, mitochondrial precursor (HSP60) [Arabidopsis thaliana] gi|20466256|gb|AAM20445.1| mitochondrial chaperonin hsp60 [Arabidopsis thaliana] gi|34098917|gb|AAQ56841.1| At3g23990 [Arabidopsis thaliana] gi|332643321|gb|AEE76842.1| chaperonin CPN60 [Arabidopsis thaliana]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 480 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 539

Query: 61  SM 62
           S+
Sbjct: 540 SV 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16221|emb|CAA77646.1| chaperonin hsp60 [Arabidopsis thaliana]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 480 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 539

Query: 61  SM 62
           S+
Sbjct: 540 SV 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826771|ref|XP_002881268.1| hypothetical protein ARALYDRAFT_902390 [Arabidopsis lyrata subsp. lyrata] gi|297327107|gb|EFH57527.1| hypothetical protein ARALYDRAFT_902390 [Arabidopsis lyrata subsp. lyrata]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct: 481 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24637539|gb|AAN63805.1| heat shock protein 60 [Prunus dulcis]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 51/63 (80%), Gaps = 1/63 (1%)

Query: 1   MPVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           MPV TIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A
Sbjct: 450 MPVSTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDA 509

Query: 60  TSM 62
            S+
Sbjct: 510 ASV 512

Source: Prunus dulcis

Species: Prunus dulcis

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|461736|sp|Q05046.1|CH62_CUCMA RecName: Full=Chaperonin CPN60-2, mitochondrial; AltName: Full=HSP60-2; Flags: Precursor gi|478786|pir||S29316 chaperonin 60 - cucurbit gi|12546|emb|CAA50218.1| chaperonin 60 [Cucurbita cv. Kurokawa Amakuri]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           PV+TIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct: 481 PVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540

Query: 61  SM 62
           S+
Sbjct: 541 SV 542

Source: Cucurbita cv. Kurokawa Amakuri

Species: Cucurbita hybrid cultivar

Genus: Cucurbita

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2046590	585	HSP60-2 "heat shock protein 60	0.61	0.104	0.709	5.1e-17
TAIR|locus:2076081	577	HSP60 "heat shock protein 60"	0.61	0.105	0.693	6.3e-17
TAIR|locus:2087959	572	HSP60-3A "heat shock protein 6	0.63	0.110	0.578	6.1e-13
ASPGD|ASPL0000003680	588	AN6089 [Emericella nidulans (t	0.75	0.127	0.45	4.8e-09
UNIPROTKB|G4NAR5	589	MGG_03165 "Heat shock protein	0.75	0.127	0.45	4.8e-09
ZFIN|ZDB-GENE-021206-1	575	hspd1 "heat shock 60kD protein	0.62	0.107	0.435	5.9e-09
UNIPROTKB|I3L9N6	518	HSPD1 "Uncharacterized protein	0.62	0.119	0.403	8.3e-09
UNIPROTKB|F1SMZ7	575	HSPD1 "Uncharacterized protein	0.62	0.107	0.403	9.7e-09
GENEDB_PFALCIPARUM|PF10_0153	580	PF10_0153 "hsp60" [Plasmodium	0.61	0.105	0.451	1.6e-08
UNIPROTKB|Q8IJN9	580	PF10_0153 "Heat shock protein	0.61	0.105	0.451	1.6e-08

TAIR|locus:2046590 HSP60-2 "heat shock protein 60-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 44/62 (70%), Positives = 51/62 (82%)

Query:     2 PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             PVYTIA+ A VEG+VV GKLL QDNP+LGYDA KGEYVD+IK GI+DPLKVIR   + A 
Sbjct:   481 PVYTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540

Query:    61 SM 62
             S+
Sbjct:   541 SV 542

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;ISS;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0006954 "inflammatory response" evidence=ISS

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

TAIR|locus:2076081 HSP60 "heat shock protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 6.3e-17, P = 6.3e-17
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query:     2 PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             PVYTIA+ A VEG+V VGKLL QDNP+LGYDA KGEYVD++K GI+DPLKVIR   + A 
Sbjct:   480 PVYTIASNAGVEGAVIVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAA 539

Query:    61 SM 62
             S+
Sbjct:   540 SV 541

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0051131 "chaperone-mediated protein complex assembly" evidence=TAS

GO:0007005 "mitochondrion organization" evidence=TAS

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA;IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2087959 HSP60-3A "heat shock protein 60-3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.1e-13, P = 6.1e-13
 Identities = 37/64 (57%), Positives = 47/64 (73%)

Query:     2 PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             P +TIAA A  +GS VVGKLL QD+ N G+DA KG+YVD++K GI+DP+KVIR     A 
Sbjct:   480 PAFTIAANAGYDGSLVVGKLLEQDDCNFGFDAAKGKYVDMVKAGIIDPVKVIRTALTDAA 539

Query:    61 SMFL 64
             S+ L
Sbjct:   540 SVSL 543

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

ASPGD|ASPL0000003680 AN6089 [Emericella nidulans (taxid:162425)]

 Score = 144 (55.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 36/80 (45%), Positives = 47/80 (58%)

Query:     2 PVYTIAATAEVEGSV-VGKLLGQDNP--NLGYDATKGEYVDLIKEGILDPLKVIRKVFIG 58
             P  TI   A +EGSV VGKL  + +   N G+D+ KGEYVD+I  GI+DPLKV+R   + 
Sbjct:   485 PARTIVENAGLEGSVIVGKLTDEFSKDFNRGFDSAKGEYVDMIAAGIVDPLKVVRTALVD 544

Query:    59 AT--SMFLNKLREGQLEDPE 76
             A+  S  L       +E PE
Sbjct:   545 ASGVSSLLGTTEVAIVEAPE 564

GO:0071470 "cellular response to osmotic stress" evidence=IEP

GO:0051131 "chaperone-mediated protein complex assembly" evidence=IEA

GO:0006458 "'de novo' protein folding" evidence=IEA

GO:0051604 "protein maturation" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0045041 "protein import into mitochondrial intermembrane space" evidence=IEA

GO:0003688 "DNA replication origin binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|G4NAR5 MGG_03165 "Heat shock protein 60" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 144 (55.7 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 36/80 (45%), Positives = 47/80 (58%)

Query:     2 PVYTIAATAEVEGSV-VGKLLGQDNPNL--GYDATKGEYVDLIKEGILDPLKVIRKVFIG 58
             P  TI   A +EGSV VGKL+ +   +   GYDA KGEYVD+I  GI+DPLKV+R   + 
Sbjct:   486 PARTIVENAGLEGSVIVGKLMDEFGSDFRKGYDAAKGEYVDMIDAGIVDPLKVVRTGLLD 545

Query:    59 ATSM--FLNKLREGQLEDPE 76
             A+ +   L       +E PE
Sbjct:   546 ASGVASLLGTTEVAIVEAPE 565

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-021206-1 hspd1 "heat shock 60kD protein 1 (chaperonin)" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query:     1 MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             +P  TIA  A VEGS+V + + Q +  +GYDA  GEYV++++ GI+DP KV+R   + A 
Sbjct:   474 IPAMTIAKNAGVEGSLVVEKILQSSTEIGYDAMNGEYVNMVERGIIDPTKVVRTALLDAA 533

Query:    61 SM 62
              +
Sbjct:   534 GV 535

GO:0042026 "protein refolding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006950 "response to stress" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0042246 "tissue regeneration" evidence=IMP

GO:0031101 "fin regeneration" evidence=IMP

UNIPROTKB|I3L9N6 HSPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 141 (54.7 bits), Expect = 8.3e-09, P = 8.3e-09
 Identities = 25/62 (40%), Positives = 43/62 (69%)

Query:     1 MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             +P  TIA  A VEGS++ + + Q +P +GYDA  G++V+++++GI+DP KV+R   + A 
Sbjct:   419 IPAMTIAKNAGVEGSLIVEKILQSSPEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAA 478

Query:    61 SM 62
              +
Sbjct:   479 GV 480

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1SMZ7 HSPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 141 (54.7 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/62 (40%), Positives = 43/62 (69%)

Query:     1 MPVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             +P  TIA  A VEGS++ + + Q +P +GYDA  G++V+++++GI+DP KV+R   + A 
Sbjct:   476 IPAMTIAKNAGVEGSLIVEKILQSSPEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAA 535

Query:    61 SM 62
              +
Sbjct:   536 GV 537

GO:0051087 "chaperone binding" evidence=IEA

GO:0050870 "positive regulation of T cell activation" evidence=IEA

GO:0048291 "isotype switching to IgG isotypes" evidence=IEA

GO:0046696 "lipopolysaccharide receptor complex" evidence=IEA

GO:0044459 "plasma membrane part" evidence=IEA

GO:0043498 "cell surface binding" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043032 "positive regulation of macrophage activation" evidence=IEA

GO:0042110 "T cell activation" evidence=IEA

GO:0042100 "B cell proliferation" evidence=IEA

GO:0042026 "protein refolding" evidence=IEA

GO:0032755 "positive regulation of interleukin-6 production" evidence=IEA

GO:0032735 "positive regulation of interleukin-12 production" evidence=IEA

GO:0032733 "positive regulation of interleukin-10 production" evidence=IEA

GO:0032729 "positive regulation of interferon-gamma production" evidence=IEA

GO:0032727 "positive regulation of interferon-alpha production" evidence=IEA

GO:0030141 "secretory granule" evidence=IEA

GO:0030135 "coated vesicle" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0002842 "positive regulation of T cell mediated immune response to tumor cell" evidence=IEA

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=IEA

GO:0002368 "B cell cytokine production" evidence=IEA

GO:0002039 "p53 binding" evidence=IEA

GO:0001530 "lipopolysaccharide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GENEDB_PFALCIPARUM|PF10_0153 PF10_0153 "hsp60" [Plasmodium falciparum (taxid:5833)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:     2 PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             P+  IA  A  EGSVV G +L + N N+G++A +G+YVD+I+ GI+DP KV++     A 
Sbjct:   480 PIKQIAENAGHEGSVVAGNILKEKNSNIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAA 539

Query:    61 SM 62
             S+
Sbjct:   540 SI 541

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8IJN9 PF10_0153 "Heat shock protein 60" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:     2 PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
             P+  IA  A  EGSVV G +L + N N+G++A +G+YVD+I+ GI+DP KV++     A 
Sbjct:   480 PIKQIAENAGHEGSVVAGNILKEKNSNIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAA 539

Query:    61 SM 62
             S+
Sbjct:   540 SI 541

GO:0005739 "mitochondrion" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=ISS

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7B5	CH60B_ARATH	No assigned EC number	0.7096	0.61	0.1042	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_302955.1	annotation not avaliable (577 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.1__1640__AT1G14980.1	annotation not avaliable (98 aa)	•			•	•		•		0.792
	fgenesh2_kg.6__3533__AT4G01800.1	annotation not avaliable (1022 aa)							•		0.772
	fgenesh1_pm.C_scaffold_5000035	annotation not avaliable (96 aa)	•			•	•		•		0.757
	fgenesh2_kg.1__2517__AT1G23100.1	annotation not avaliable (97 aa)	•			•	•		•		0.747
	fgenesh2_kg.6__2112__AT5G20720.2	annotation not avaliable (253 aa)	•		•	•	•		•		0.723
	fgenesh2_kg.2__207__AT1G62750.1	annotation not avaliable (782 aa)			•	•			•		0.613
	fgenesh2_kg.3__3475__AT2G18710.1	annotation not avaliable (549 aa)							•		0.578
	scaffold_201045.1	annotation not avaliable (1763 aa)							•		0.552
	fgenesh2_kg.2__709__ATCG00160.1	annotation not avaliable (225 aa)	•				•		•		0.539
	fgenesh2_kg.3__1104__AT3G10690.1	annotation not avaliable (950 aa)				•			•		0.504

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
PTZ00114	555	PTZ00114, PTZ00114, Heat shock protein 60; Provisi	4e-15
PRK00013	542	PRK00013, groEL, chaperonin GroEL; Reviewed	1e-14
cd03344	520	cd03344, GroEL, GroEL_like type I chaperonin	2e-14
PRK12852	545	PRK12852, groEL, chaperonin GroEL; Reviewed	3e-12
PRK12850	544	PRK12850, groEL, chaperonin GroEL; Reviewed	8e-12
PRK12849	542	PRK12849, groEL, chaperonin GroEL; Reviewed	1e-11
PLN03167	600	PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr	1e-10
TIGR02348	524	TIGR02348, GroEL, chaperonin GroL	3e-10
PRK12851	541	PRK12851, groEL, chaperonin GroEL; Reviewed	5e-10
COG0459	524	COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po	1e-08
PRK14104	546	PRK14104, PRK14104, chaperonin GroEL; Provisional	1e-08
CHL00093	529	CHL00093, groEL, chaperonin GroEL	1e-08
pfam00118	481	pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami	1e-07
cd00309	464	cd00309, chaperonin_type_I_II, chaperonin families	4e-07
pfam14396	213	pfam14396, CFTR_R, Cystic fibrosis TM conductance	0.003

>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional

 Score = 68.8 bits (169), Expect = 4e-15
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 1   MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           +P   IA  A VEG+V V K+L + +P+ GYDA  GEYV++ + GI+DP KV+R   + A
Sbjct: 464 LPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDA 523

Query: 60  TS 61
            S
Sbjct: 524 AS 525

Length = 555

>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A +EGSVV  K+        GY+A  GEYVD+I+ GI+DP KV R     A 
Sbjct: 449 PLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAA 508

Query: 61  S---MFL 64
           S   + L
Sbjct: 509 SVAGLLL 515

Length = 542

>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A V+GS VV K+L   +   GYDA  GEYVD+I+ GI+DP KV+R     A 
Sbjct: 447 PLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAA 505

Query: 61  S 61
           S
Sbjct: 506 S 506

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520

>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed

 Score = 60.6 bits (147), Expect = 3e-12
 Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A VEGS VVGK+L   +   G+DA   EYVD++ +GI+DP KV+R     A 
Sbjct: 450 PIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAA 509

Query: 61  SM 62
           S+
Sbjct: 510 SV 511

Length = 545

>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A  EGS VVGK+      N G++A  GEY D+++ GI+DP KV R     A 
Sbjct: 450 PLRQIATNAGFEGSVVVGKVAEL-PGNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAA 508

Query: 61  SM 62
           S+
Sbjct: 509 SI 510

Length = 544

>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 25/60 (41%), Positives = 34/60 (56%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           P+  IA  A ++GSVV   + +     G++A  GEY DLI  GI+DP+KV R     A S
Sbjct: 449 PLRQIAENAGLDGSVVVAKVLELEDGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAAS 508

Length = 542

>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 2   PVYTIAATAEVEGSVVG-KLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P+  IA  A V GSVV  K+L  DNP  GY+A  G+Y DL+  GI+DP KV+R
Sbjct: 506 PLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVR 558

Length = 600

>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           P+  IA  A ++G+VV + + +   N G++A  GEY DL++ GI+DP KV R     A S
Sbjct: 448 PLRQIAENAGLDGAVVAEKVKELKGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAAS 507

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of pfam00118 [Protein fate, Protein folding and stabilization]. Length = 524

>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed

 Score = 54.4 bits (131), Expect = 5e-10
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           PV  IA  A  EGSVV   L +     G++A   EY DL  +G++DP+KV+R     A S
Sbjct: 450 PVRQIAENAGAEGSVVVGKLREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAAS 509

Query: 62  M 62
           +
Sbjct: 510 V 510

Length = 541

>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2   PVYTIAATAEVEGS-VVGKLLGQDNP-NLGYDATKGEY-VDLIKEGILDPLKVIRKVFIG 58
           P   +A  A ++   V+ KL       N G DA  GEY  D+I+ GI+DPLKV R     
Sbjct: 437 PPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKN 496

Query: 59  ATS 61
           A  
Sbjct: 497 AAE 499

Length = 524

>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional

 Score = 50.4 bits (120), Expect = 1e-08
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 2   PVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P   IA  A  +GSV VGK+L ++  + G+D+  GEY +L+ +GI+DP KV+R     A 
Sbjct: 450 PARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAA 509

Query: 61  SM 62
           S+
Sbjct: 510 SV 511

Length = 546

>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 20/61 (32%), Positives = 35/61 (57%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           P+  IA  A   GSV+ + + + +  +GY+A   ++V++ + GI+DP KV R     A S
Sbjct: 451 PLKRIAENAGKNGSVIIEKVQEQDFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAAS 510

Query: 62  M 62
           +
Sbjct: 511 I 511

Length = 529

>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 2   PVYTIAATAEVEG-SVVGKLL--GQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIG 58
              T+A  A ++   V+ KL    +   NLG DA  GE  D+ + GI+DPLKV R     
Sbjct: 403 IPRTLAENAGLDPIEVLAKLKAAHKKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKS 462

Query: 59  ATS 61
           A  
Sbjct: 463 AVE 465

This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481

>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 1   MPVYTIAATAEVEGS-VVGKLLGQDNPNLGY---DATKGEYVDLIKEGILDPLKVIRKVF 56
           +   T+A  A ++   VV KL  +     G    D   GE VD+ + GI+DPLKV R+  
Sbjct: 387 VIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQAL 446

Query: 57  IGATS 61
             AT 
Sbjct: 447 KSATE 451

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. Length = 464

>gnl|CDD|222733 pfam14396, CFTR_R, Cystic fibrosis TM conductance regulator (CFTR), regulator domain

 Score = 34.4 bits (79), Expect = 0.003
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 35 GEYVDLIKEGILDPLKVIRKV-FIGATSMFLNKLREGQLEDPERK 78
          GE+ +  K  IL+PL   RK  F+  + + +N + E   E PER+
Sbjct: 53 GEFGEKRKNSILNPLNSARKFSFVQKSQLQMNGIEEESDEPPERR 97

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PRK12852	545	groEL chaperonin GroEL; Reviewed	99.82
PRK12849	542	groEL chaperonin GroEL; Reviewed	99.82
PRK12850	544	groEL chaperonin GroEL; Reviewed	99.81
PRK00013	542	groEL chaperonin GroEL; Reviewed	99.81
PLN03167	600	Chaperonin-60 beta subunit; Provisional	99.79
PRK14104	546	chaperonin GroEL; Provisional	99.78
PRK12851	541	groEL chaperonin GroEL; Reviewed	99.76
COG0459	524	GroL Chaperonin GroEL (HSP60 family) [Posttranslat	99.75
PTZ00114	555	Heat shock protein 60; Provisional	99.73
CHL00093	529	groEL chaperonin GroEL	99.73
PTZ00212	533	T-complex protein 1 subunit beta; Provisional	99.72
cd03336	517	TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper	99.71
TIGR02346	531	chap_CCT_theta T-complex protein 1, theta subunit.	99.7
TIGR02347	531	chap_CCT_zeta T-complex protein 1, zeta subunit. M	99.7
TIGR02341	519	chap_CCT_beta T-complex protein 1, beta subunit. M	99.7
cd03341	472	TCP1_theta TCP-1 (CTT or eukaryotic type II) chape	99.69
cd03342	484	TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper	99.69
cd03335	527	TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape	99.69
TIGR02344	525	chap_CCT_gamma T-complex protein 1, gamma subunit.	99.69
TIGR02342	517	chap_CCT_delta T-complex protein 1, delta subunit.	99.69
TIGR02348	524	GroEL chaperonin GroL. This family consists of Gro	99.69
TIGR02345	522	chap_CCT_eta T-complex protein 1, eta subunit. Mem	99.68
cd03344	520	GroEL GroEL_like type I chaperonin. Chaperonins ar	99.68
TIGR02340	536	chap_CCT_alpha T-complex protein 1, alpha subunit.	99.68
cd03338	515	TCP1_delta TCP-1 (CTT or eukaryotic type II) chape	99.68
cd03343	517	cpn60 cpn60 chaperonin family. Chaperonins are inv	99.68
cd03340	522	TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero	99.67
cd03339	526	TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha	99.67
TIGR02339	519	thermosome_arch thermosome, various subunits, arch	99.65
cd03337	480	TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape	99.65
cd00309	464	chaperonin_type_I_II chaperonin families, type I a	99.62
KOG0356	550	consensus Mitochondrial chaperonin, Cpn60/Hsp60p [	99.61
TIGR02343	532	chap_CCT_epsi T-complex protein 1, epsilon subunit	99.61
PF00118	485	Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon	99.6
KOG0361	543	consensus Chaperonin complex component, TCP-1 eta	99.53
KOG0363	527	consensus Chaperonin complex component, TCP-1 beta	99.49
KOG0358	534	consensus Chaperonin complex component, TCP-1 delt	99.21
KOG0362	537	consensus Chaperonin complex component, TCP-1 thet	99.13
KOG0364	527	consensus Chaperonin complex component, TCP-1 gamm	99.04
KOG0357	400	consensus Chaperonin complex component, TCP-1 epsi	99.0
KOG0360	545	consensus Chaperonin complex component, TCP-1 alph	98.27
KOG0359	520	consensus Chaperonin complex component, TCP-1 zeta	98.03

>PRK12852 groEL chaperonin GroEL; Reviewed

Probab=99.82  E-value=1.7e-20  Score=153.70  Aligned_cols=90  Identities=34%  Similarity=0.557  Sum_probs=78.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.+++++|||+.+|+++||++.|||||+.|++++|++|  +|++|||+|++|+..|+.
T Consensus       449 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~~  528 (545)
T PRK12852        449 APIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKK  528 (545)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Confidence            4899999999999999 9999886678899999999999999999999999999999999  999999999999987765


Q ss_pred             chhhhhccCCCCCCC
Q 034233           78 KHKKYKKKKKLDDVG   92 (100)
Q Consensus        78 ~~~~~~~~~~~~~~~   92 (100)
                      ..+  ..|+.+..||
T Consensus       529 ~~~--~~~~~~~~~~  541 (545)
T PRK12852        529 DAA--PAMPAGGGMG  541 (545)
T ss_pred             CCC--CCCCCCCCCC
Confidence            332  2255554444

>PRK12849 groEL chaperonin GroEL; Reviewed

Probab=99.82  E-value=1.4e-20  Score=154.34  Aligned_cols=91  Identities=33%  Similarity=0.517  Sum_probs=82.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.||+++|++|  +|++||++|++|+..|.+
T Consensus       448 ~ip~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~  526 (542)
T PRK12849        448 APLRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEE  526 (542)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence            4899999999999999 99998774 5799999999999999999999999999999999  999999999999998854


Q ss_pred             chhhhhccCCCCCCCc
Q 034233           78 KHKKYKKKKKLDDVGI   93 (100)
Q Consensus        78 ~~~~~~~~~~~~~~~~   93 (100)
                      .. .|.+|++|++||-
T Consensus       527 ~~-~~~~~~~~~~~~~  541 (542)
T PRK12849        527 ED-PPGGMGGMGGMGH  541 (542)
T ss_pred             CC-CCCCCCCCCCCCC
Confidence            43 4889999998873

>PRK12850 groEL chaperonin GroEL; Reviewed

Probab=99.81  E-value=2.4e-20  Score=152.99  Aligned_cols=91  Identities=33%  Similarity=0.513  Sum_probs=80.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.|++++|+.|  +|++|||+|++|+..|..
T Consensus       449 ~ip~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~  527 (544)
T PRK12850        449 EPLRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKK  527 (544)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhHHHhhccCCCC
Confidence            4899999999999999 99998764 4789999999999999999999999999999999  999999999999998765


Q ss_pred             chh-hhhccCCCCCCC
Q 034233           78 KHK-KYKKKKKLDDVG   92 (100)
Q Consensus        78 ~~~-~~~~~~~~~~~~   92 (100)
                      .++ +....|+|+|||
T Consensus       528 ~~~~~~~~~~~~~~~~  543 (544)
T PRK12850        528 AAAAAAGPGPGMGGMG  543 (544)
T ss_pred             CCCCCCCCCCCCCCCC
Confidence            433 556667777776

>PRK00013 groEL chaperonin GroEL; Reviewed

Probab=99.81  E-value=3.2e-20  Score=152.26  Aligned_cols=85  Identities=36%  Similarity=0.540  Sum_probs=75.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++||++|++|+..|..
T Consensus       448 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~iI~~~~~~  527 (542)
T PRK00013        448 APLRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEK  527 (542)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            4899999999999999 9999886667899999999999999999999999999999999  999999999999998855


Q ss_pred             chhhhhccC
Q 034233           78 KHKKYKKKK   86 (100)
Q Consensus        78 ~~~~~~~~~   86 (100)
                      .. +.++|+
T Consensus       528 ~~-~~~~~~  535 (542)
T PRK00013        528 KA-AAPPMG  535 (542)
T ss_pred             cC-CCCCCC
Confidence            43 334443

>PLN03167 Chaperonin-60 beta subunit; Provisional

Probab=99.79  E-value=1.3e-19  Score=150.30  Aligned_cols=79  Identities=38%  Similarity=0.542  Sum_probs=72.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|+++||+|||+|+.+ +.+|++.++.++|||+.+++|+||++.|||||+.||+++|+.|  +|++||++|++|+..+..
T Consensus       505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~  584 (600)
T PLN03167        505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEP  584 (600)
T ss_pred             cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            4899999999999999 9999865677899999999999999999999999999999999  999999999999987644


Q ss_pred             ch
Q 034233           78 KH   79 (100)
Q Consensus        78 ~~   79 (100)
                      ++
T Consensus       585 ~~  586 (600)
T PLN03167        585 EP  586 (600)
T ss_pred             CC
Confidence            33

>PRK14104 chaperonin GroEL; Provisional

Probab=99.78  E-value=3.7e-19  Score=146.09  Aligned_cols=92  Identities=32%  Similarity=0.466  Sum_probs=79.6

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.++.++|||+.+++++||++.|||||+.|++++|++|  +|++|||+|++|...|+.
T Consensus       449 ~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~id~~I~~~~~~  528 (546)
T PRK14104        449 APARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKK  528 (546)
T ss_pred             hhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence            4899999999999999 9999876667899999999999999999999999999999999  999999999999988755


Q ss_pred             chhhhhccCCCCCCCc
Q 034233           78 KHKKYKKKKKLDDVGI   93 (100)
Q Consensus        78 ~~~~~~~~~~~~~~~~   93 (100)
                      ... +..|+-|++||.
T Consensus       529 ~~~-~~~~~~~~~~~~  543 (546)
T PRK14104        529 GGA-GPAMPPGGGMGG  543 (546)
T ss_pred             CCC-CCCCCCCCCCCC
Confidence            443 335555555553

>PRK12851 groEL chaperonin GroEL; Reviewed

Probab=99.76  E-value=8.3e-19  Score=143.85  Aligned_cols=78  Identities=37%  Similarity=0.577  Sum_probs=72.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +.+|++.+ .++|||+.+|+++||++.|||||+.||+++|+.|  +|++||++|++|+..|..
T Consensus       449 ~ip~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~  527 (541)
T PRK12851        449 APVRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKK  527 (541)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCC
Confidence            4899999999999999 99998764 4799999999999999999999999999999999  999999999999998755


Q ss_pred             ch
Q 034233           78 KH   79 (100)
Q Consensus        78 ~~   79 (100)
                      .+
T Consensus       528 ~~  529 (541)
T PRK12851        528 EP  529 (541)
T ss_pred             CC
Confidence            44

>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.1e-18  Score=142.99  Aligned_cols=78  Identities=35%  Similarity=0.496  Sum_probs=72.9

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCC-CCeeEeccCCce-echhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDN-PNLGYDATKGEY-VDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~-~~~G~d~~~~~~-~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      .|.++||+|||+|+.+ +.+||+.++ +++|||+.+++| .||++.|||||++|++++|++|  +|+++||+|++|.+.|
T Consensus       436 ~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~  515 (524)
T COG0459         436 APPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKP  515 (524)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            4899999999999999 999999865 569999999999 7899999999999999999999  9999999999999988


Q ss_pred             ccc
Q 034233           76 ERK   78 (100)
Q Consensus        76 ~~~   78 (100)
                      +.+
T Consensus       516 ~~~  518 (524)
T COG0459         516 EEK  518 (524)
T ss_pred             ccc
Confidence            765

>PTZ00114 Heat shock protein 60; Provisional

Probab=99.73  E-value=3.1e-18  Score=140.74  Aligned_cols=78  Identities=38%  Similarity=0.728  Sum_probs=72.4

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +++|++.+++++|||+.+|+++||++.|||||+.|++++|++|  +|++||++|++|+..|..
T Consensus       464 ~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  543 (555)
T PTZ00114        464 LPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKE  543 (555)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhHHHHHHhCCcc
Confidence            4899999999999999 9999874567899999999999999999999999999999999  999999999999987755


Q ss_pred             c
Q 034233           78 K   78 (100)
Q Consensus        78 ~   78 (100)
                      .
T Consensus       544 ~  544 (555)
T PTZ00114        544 K  544 (555)
T ss_pred             c
Confidence            3

>CHL00093 groEL chaperonin GroEL

Probab=99.73  E-value=3e-18  Score=140.13  Aligned_cols=75  Identities=29%  Similarity=0.484  Sum_probs=70.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE   76 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~   76 (100)
                      .|.++||+|||+|+.+ +++|+.. +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|++.|+
T Consensus       450 ~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~  527 (529)
T CHL00093        450 APLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKE  527 (529)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999 9999876 45899999999999999999999999999999999  99999999999998763

>PTZ00212 T-complex protein 1 subunit beta; Provisional

Probab=99.72  E-value=8.3e-18  Score=137.34  Aligned_cols=76  Identities=22%  Similarity=0.235  Sum_probs=69.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+..
T Consensus       447 ~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  526 (533)
T PTZ00212        447 QIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCA  526 (533)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Confidence            3789999999999999 9999853   356799999999999999999999999999999999  999999999999886


Q ss_pred             Cc
Q 034233           75 PE   76 (100)
Q Consensus        75 ~~   76 (100)
                      |+
T Consensus       527 ~~  528 (533)
T PTZ00212        527 PR  528 (533)
T ss_pred             Cc
Confidence            53

>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit

Probab=99.71  E-value=9.3e-18  Score=136.54  Aligned_cols=75  Identities=25%  Similarity=0.321  Sum_probs=69.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+|++.   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+..
T Consensus       435 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  514 (517)
T cd03336         435 QLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCA  514 (517)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcC
Confidence            4889999999999999 9999864   356799999999999999999999999999999999  999999999999886


Q ss_pred             C
Q 034233           75 P   75 (100)
Q Consensus        75 ~   75 (100)
                      |
T Consensus       515 ~  515 (517)
T cd03336         515 P  515 (517)
T ss_pred             C
Confidence            6

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit

Probab=99.70  E-value=1.2e-17  Score=136.45  Aligned_cols=80  Identities=20%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCc--eechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGE--YVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~--~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      +|.++||+|||+|+.+ +.+|+..   ++.++|||+.+++  ++||++.|||||+.||+++|+.|  +|++|||+|++|+
T Consensus       439 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  518 (531)
T TIGR02346       439 IIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIM  518 (531)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence            4889999999999999 9999764   3557899999999  59999999999999999999999  9999999999999


Q ss_pred             cCCccchh
Q 034233           73 EDPERKHK   80 (100)
Q Consensus        73 ~~~~~~~~   80 (100)
                      ..|....+
T Consensus       519 ~~~~~~~~  526 (531)
T TIGR02346       519 AKPAGGPK  526 (531)
T ss_pred             cCCCCCCC
Confidence            87654443

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit

Probab=99.70  E-value=1.3e-17  Score=136.43  Aligned_cols=76  Identities=21%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      +|.++||+|||+|+.+ +.+|++.+   +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+..
T Consensus       447 ~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~  526 (531)
T TIGR02347       447 VIPKTLAENSGLDAQDTLVKLEDEHDEGGEVVGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAG  526 (531)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCc
Confidence            4889999999999999 99998642   35689999999999999999999999999999999  999999999999876


Q ss_pred             Cc
Q 034233           75 PE   76 (100)
Q Consensus        75 ~~   76 (100)
                      |.
T Consensus       527 ~~  528 (531)
T TIGR02347       527 RS  528 (531)
T ss_pred             cc
Confidence            54

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit

Probab=99.70  E-value=1.6e-17  Score=135.47  Aligned_cols=75  Identities=27%  Similarity=0.342  Sum_probs=69.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+|++.   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+..
T Consensus       436 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~  515 (519)
T TIGR02341       436 QLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAA  515 (519)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCcccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence            3889999999999999 9999864   345689999999999999999999999999999999  999999999999987


Q ss_pred             C
Q 034233           75 P   75 (100)
Q Consensus        75 ~   75 (100)
                      |
T Consensus       516 ~  516 (519)
T TIGR02341       516 P  516 (519)
T ss_pred             C
Confidence            7

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit

Probab=99.69  E-value=3.6e-17  Score=131.89  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCC--ceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKG--EYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~--~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      +|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|  +++||++.|||||+.||+++|+.|  +|++|||+|++|.
T Consensus       391 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  470 (472)
T cd03341         391 VVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQIIM  470 (472)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHHHHHHHHHHHhhhcceee
Confidence            4889999999999999 9999763   355799999999  999999999999999999999999  9999999999986


Q ss_pred             c
Q 034233           73 E   73 (100)
Q Consensus        73 ~   73 (100)
                      .
T Consensus       471 ~  471 (472)
T cd03341         471 A  471 (472)
T ss_pred             c
Confidence            4

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit

Probab=99.69  E-value=2.2e-17  Score=133.60  Aligned_cols=73  Identities=25%  Similarity=0.197  Sum_probs=67.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      +|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+.
T Consensus       404 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~  482 (484)
T cd03342         404 VIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRA  482 (484)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhc
Confidence            4889999999999999 9999854   356799999999999999999999999999999999  99999999999875

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit

Probab=99.69  E-value=2.6e-17  Score=134.05  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=68.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC-----------CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD-----------NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNK   66 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~-----------~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~   66 (100)
                      .|.++||+|||+|+.+ +.+|++.+           +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||
T Consensus       439 ~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLr  518 (527)
T cd03335         439 VIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILR  518 (527)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHh
Confidence            3789999999999999 99998631           34689999999999999999999999999999999  9999999


Q ss_pred             ccceeecCC
Q 034233           67 LREGQLEDP   75 (100)
Q Consensus        67 ~d~vV~~~~   75 (100)
                      +|.+|+..|
T Consensus       519 ID~ii~~~~  527 (527)
T cd03335         519 IDDLIKLNP  527 (527)
T ss_pred             hcceeecCC
Confidence            999997754

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit

Probab=99.69  E-value=2.1e-17  Score=134.45  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=69.0

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC----CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD----NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~----~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+|+..+    +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|..
T Consensus       442 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  521 (525)
T TIGR02344       442 IIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGIDGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSG  521 (525)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhc
Confidence            3789999999999999 99998642    45699999999999999999999999999999999  99999999999987


Q ss_pred             CC
Q 034233           74 DP   75 (100)
Q Consensus        74 ~~   75 (100)
                      .|
T Consensus       522 ~~  523 (525)
T TIGR02344       522 VK  523 (525)
T ss_pred             CC
Confidence            65

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit

Probab=99.69  E-value=4.2e-17  Score=132.71  Aligned_cols=73  Identities=25%  Similarity=0.314  Sum_probs=67.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      +|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|.+|+.
T Consensus       438 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~  516 (517)
T TIGR02342       438 VIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLVTTSAVTLASETVRMILKIDDIVFT  516 (517)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence            4889999999999999 9999864   356799999999999999999999999999999999  99999999999874

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>TIGR02348 GroEL chaperonin GroL

Probab=99.69  E-value=3.1e-17  Score=134.06  Aligned_cols=74  Identities=34%  Similarity=0.552  Sum_probs=68.6

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      .|.++||+|||+|+.+ +++|++. +.++|||+.+|+++||++.|||||+.||+++|++|  +|++||++|++|++.|
T Consensus       447 ~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~id~ii~~~~  523 (524)
T TIGR02348       447 APLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKP  523 (524)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhcCC
Confidence            4899999999999999 9999876 34599999999999999999999999999999999  9999999999997654

This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.

>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit

Probab=99.68  E-value=3.9e-17  Score=133.05  Aligned_cols=73  Identities=15%  Similarity=0.199  Sum_probs=67.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      +|.++||+|||+|+.+ +.+|++.   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+.
T Consensus       441 ~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  519 (522)
T TIGR02345       441 IIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMN  519 (522)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhC
Confidence            4889999999999999 9999864   345799999999999999999999999999999999  99999999999976

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03344 GroEL GroEL_like type I chaperonin

Probab=99.68  E-value=7.8e-17  Score=131.66  Aligned_cols=71  Identities=42%  Similarity=0.679  Sum_probs=67.4

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +++|++.+. ++|||+.+|+++||++.|||||+.|++++|+.|  +|++||++|.+|+
T Consensus       446 ~ip~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~id~~i~  519 (520)
T cd03344         446 APLRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVV  519 (520)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhhheEEe
Confidence            3899999999999999 999988755 899999999999999999999999999999999  9999999999986

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.

>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit

Probab=99.68  E-value=3.6e-17  Score=133.61  Aligned_cols=78  Identities=21%  Similarity=0.244  Sum_probs=70.0

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC-----------CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD-----------NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNK   66 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~-----------~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~   66 (100)
                      +|.++||+|||+|+.+ +.+|++.+           +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||
T Consensus       443 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~  522 (536)
T TIGR02340       443 IIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILR  522 (536)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHh
Confidence            4889999999999999 99997631           23689999999999999999999999999999999  9999999


Q ss_pred             ccceeecCCccc
Q 034233           67 LREGQLEDPERK   78 (100)
Q Consensus        67 ~d~vV~~~~~~~   78 (100)
                      +|.+|+..|+++
T Consensus       523 ID~ii~~~~~~~  534 (536)
T TIGR02340       523 IDDLIKLNPEQS  534 (536)
T ss_pred             hhhhhhcCCCCC
Confidence            999998876443

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit

Probab=99.68  E-value=4.7e-17  Score=132.02  Aligned_cols=72  Identities=25%  Similarity=0.355  Sum_probs=67.0

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      +|.++||+|||+|+.+ +.+|++.   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|.+|+
T Consensus       437 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~  514 (515)
T cd03338         437 VIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMILKIDDIVL  514 (515)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhhcCceecHHHHHHHHHHHHHHHHHHhccchhhc
Confidence            4889999999999999 9999864   356799999999999999999999999999999999  9999999999986

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03343 cpn60 cpn60 chaperonin family

Probab=99.68  E-value=5.3e-17  Score=131.66  Aligned_cols=73  Identities=23%  Similarity=0.381  Sum_probs=67.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|++.||++.|||||+.||+++|+.|  +|++|||+|++|+.
T Consensus       438 ~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~  516 (517)
T cd03343         438 EIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA  516 (517)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCCCccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence            4889999999999999 9999843   346799999999999999999999999999999999  99999999999864

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit

Probab=99.67  E-value=8.5e-17  Score=130.85  Aligned_cols=74  Identities=14%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CC-CCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DN-PNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~-~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+|++.   ++ .++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|.+|+.
T Consensus       440 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~  519 (522)
T cd03340         440 IIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKN  519 (522)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeC
Confidence            3789999999999999 9999874   23 5699999999999999999999999999999999  99999999999976


Q ss_pred             C
Q 034233           74 D   74 (100)
Q Consensus        74 ~   74 (100)
                      .
T Consensus       520 ~  520 (522)
T cd03340         520 P  520 (522)
T ss_pred             C
Confidence            3

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit

Probab=99.67  E-value=1.1e-16  Score=130.41  Aligned_cols=72  Identities=14%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +.+|+..    ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|.+|.
T Consensus       448 ~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~  526 (526)
T cd03339         448 SIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV  526 (526)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeecCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence            3889999999999999 9999843    245699999999999999999999999999999999  9999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>TIGR02339 thermosome_arch thermosome, various subunits, archaeal

Probab=99.65  E-value=1.2e-16  Score=129.91  Aligned_cols=72  Identities=19%  Similarity=0.312  Sum_probs=66.4

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +.+|+..   ++.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+
T Consensus       441 ~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  518 (519)
T TIGR02339       441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA  518 (519)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcCCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence            3789999999999999 9999853   346799999999999999999999999999999999  9999999999875

Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.

>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit

Probab=99.65  E-value=1.2e-16  Score=129.05  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---C-CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---D-NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~-~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +.+|++.   + +.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|+
T Consensus       401 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~  479 (480)
T cd03337         401 VIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS  479 (480)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence            3789999999999999 9999864   2 45699999999999999999999999999999999  9999999999885

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II

Probab=99.62  E-value=4.8e-16  Score=124.42  Aligned_cols=72  Identities=31%  Similarity=0.410  Sum_probs=66.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++|++|||+|+.+ +.+|+..+   ..++|+|..++++.||++.|||||+.||+++|+.|  +|++|||+|.+|+
T Consensus       387 ~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~  464 (464)
T cd00309         387 VIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence            4789999999999999 99998653   34689999999999999999999999999999999  9999999999874

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.

>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=4.5e-16  Score=127.32  Aligned_cols=75  Identities=45%  Similarity=0.727  Sum_probs=71.4

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|+++|++|||+|+.. ++|++ .  ..+|||+.+++|+||++.||+||++|.+++|..|  +|+++++++++|.+.|++
T Consensus       464 ~P~~~IakNAGvdg~~vv~Kv~-~--~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~tte~vvteipk~  540 (550)
T KOG0356|consen  464 LPAQTIAKNAGVDGSVVVEKVL-N--DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKE  540 (550)
T ss_pred             hhHHHHHHhcCCchHHHHHHHH-h--hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhhheeEEEecccc
Confidence            4999999999999999 99998 3  3899999999999999999999999999999999  999999999999999987


Q ss_pred             c
Q 034233           78 K   78 (100)
Q Consensus        78 ~   78 (100)
                      +
T Consensus       541 ~  541 (550)
T KOG0356|consen  541 E  541 (550)
T ss_pred             c
Confidence            7

>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit

Probab=99.61  E-value=6.2e-16  Score=126.45  Aligned_cols=72  Identities=17%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +.+|++.    .+.++|||+.+|+++||++.|||||+.||+++|+.|  +|++|||+|++|.
T Consensus       452 ~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~  530 (532)
T TIGR02343       452 EIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDCLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVIS  530 (532)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeCCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhcc
Confidence            4889999999999999 9999853    245689999999999999999999999999999999  9999999999985

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.

>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism

Probab=99.60  E-value=2e-15  Score=119.71  Aligned_cols=74  Identities=31%  Similarity=0.439  Sum_probs=69.3

Q ss_pred             hHHHHHhhcCCChHH-HHHHHc--CCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            2 PVYTIAATAEVEGSV-VGKLLG--QDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~--~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      |.++|++|||+|+.+ +++|+.  ..+.++|||..+++++||.+.|||||+.|++++++.|  +|++|||+|.+|+.+|
T Consensus       407 ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~~~a~~iL~id~iI~~~~  485 (485)
T PF00118_consen  407 IPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAVEIASLILRIDEIIMAKP  485 (485)
T ss_dssp             HHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEESS
T ss_pred             hhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceeccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            789999999999999 999987  3456899999999999999999999999999999999  9999999999998865

Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....

>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=9.8e-15  Score=116.88  Aligned_cols=77  Identities=13%  Similarity=0.137  Sum_probs=71.2

Q ss_pred             HHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233            3 VYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE   76 (100)
Q Consensus         3 ~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~   76 (100)
                      -||||+|||+|... +++||.+   +..++|+|..+..+.|+++.+||+|..||++++..|  +|++||++|..|++.+.
T Consensus       446 PrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S  525 (543)
T KOG0361|consen  446 PRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKS  525 (543)
T ss_pred             HHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcc
Confidence            38999999999999 9999865   578899999999999999999999999999999999  99999999999998776


Q ss_pred             cch
Q 034233           77 RKH   79 (100)
Q Consensus        77 ~~~   79 (100)
                      +.+
T Consensus       526 ~~~  528 (543)
T KOG0361|consen  526 QSA  528 (543)
T ss_pred             cCC
Confidence            655

>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.6e-14  Score=115.20  Aligned_cols=76  Identities=24%  Similarity=0.354  Sum_probs=71.3

Q ss_pred             HHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            4 YTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         4 ~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .+||.|||||+.+ +.+||+.   ++.++|+|+++|++.||.++||+|+++||++.+.+|  +|-+|||+|.||.+.|..
T Consensus       443 tiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~  522 (527)
T KOG0363|consen  443 TIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRE  522 (527)
T ss_pred             hhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCcc
Confidence            5789999999999 9999976   578999999999999999999999999999999999  999999999999999876


Q ss_pred             ch
Q 034233           78 KH   79 (100)
Q Consensus        78 ~~   79 (100)
                      ..
T Consensus       523 r~  524 (527)
T KOG0363|consen  523 RE  524 (527)
T ss_pred             cc
Confidence            54

>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.3e-12  Score=100.11  Aligned_cols=70  Identities=24%  Similarity=0.315  Sum_probs=65.7

Q ss_pred             HHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            4 YTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         4 ~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      ++||+|||++|.. +.+||.+   ++.+.|+|+++|.+.||++..|+.|++|..+++..|  .+.+||++|+++..
T Consensus       458 ~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a  533 (534)
T KOG0358|consen  458 YTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIVNA  533 (534)
T ss_pred             HhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHHHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence            6899999999999 9999975   568899999999999999999999999999999999  99999999999753

>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=8.9e-11  Score=95.85  Aligned_cols=85  Identities=25%  Similarity=0.244  Sum_probs=72.9

Q ss_pred             HHHHhhcCCChHH-HHHHHcCC--CCCeeEeccCC-ceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            4 YTIAATAEVEGSV-VGKLLGQD--NPNLGYDATKG-EYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         4 ~~La~NAG~d~~~-v~kL~~~~--~~~~G~d~~~~-~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      ++||+|||++..+ +.+|..-+  +.++|+|.... ...|+.+.||||-+.+|+++|+.|  +|+++|++|.||+.++..
T Consensus       445 ktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~ag  524 (537)
T KOG0362|consen  445 KTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKKAG  524 (537)
T ss_pred             HhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecccC
Confidence            7899999999999 99997652  45678888766 589999999999999999999999  999999999999999988


Q ss_pred             chhhhhccCCCC
Q 034233           78 KHKKYKKKKKLD   89 (100)
Q Consensus        78 ~~~~~~~~~~~~   89 (100)
                      .++.+ +...+|
T Consensus       525 gp~~~-~~~~~d  535 (537)
T KOG0362|consen  525 GPKPP-GKKPDD  535 (537)
T ss_pred             CCCCC-CCCCCC
Confidence            88654 444444

>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=1.9e-10  Score=93.19  Aligned_cols=75  Identities=20%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      | ++|++|+|.++.. +..|++.   +...+|+|..++.++||.+.++|+|..||.+..++|  .++++||+|+++....
T Consensus       444 P-rtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k  522 (527)
T KOG0364|consen  444 P-RTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGVIVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK  522 (527)
T ss_pred             c-HHHHhhcCccHHHHHHHHHHHhcCcceeecccCceeeEeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence            5 8999999999999 9988875   347789999999999999999999999999999999  9999999999998765


Q ss_pred             cc
Q 034233           76 ER   77 (100)
Q Consensus        76 ~~   77 (100)
                      +.
T Consensus       523 k~  524 (527)
T KOG0364|consen  523 KR  524 (527)
T ss_pred             ec
Confidence            43

>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=3e-10  Score=89.70  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=65.7

Q ss_pred             HHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            4 YTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         4 ~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      ..||+|+|++|.+ ++.|+++    .++++|+|+....--||.+.+|+|++.-|++++..|  ++.|+|++|+|+...
T Consensus       319 malaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKiddv~~~~  396 (400)
T KOG0357|consen  319 MALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKIDDVRKPG  396 (400)
T ss_pred             hhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhccceecCC
Confidence            4699999999999 9999875    589999999999999999999999999999999999  999999999998653

>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.6e-07  Score=75.71  Aligned_cols=78  Identities=22%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             HHHHHhhcCCChHH-HHHHHcC-----------CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccc
Q 034233            3 VYTIAATAEVEGSV-VGKLLGQ-----------DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLR   68 (100)
Q Consensus         3 ~~~La~NAG~d~~~-v~kL~~~-----------~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d   68 (100)
                      .++|+-||+.|+.+ +.++|.-           .-.++|+|..+|++.|.++.|+++|..++...|+.|  +|.++||+|
T Consensus       451 pktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD  530 (545)
T KOG0360|consen  451 PKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRID  530 (545)
T ss_pred             hHHHhhhhccccccccccccCCchhhccCCccccchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchh
Confidence            47899999999999 9999863           124689999999999999999999999999999999  999999999


Q ss_pred             ceeecCCccchh
Q 034233           69 EGQLEDPERKHK   80 (100)
Q Consensus        69 ~vV~~~~~~~~~   80 (100)
                      +++.-.|+.+.+
T Consensus       531 ~li~l~~~~~~~  542 (545)
T KOG0360|consen  531 DLIKLLPELQVA  542 (545)
T ss_pred             hhhhcCcccccc
Confidence            999887776653

>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=3.2e-06  Score=68.96  Aligned_cols=71  Identities=20%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             HHHHHhhcCCChHH-HHHHHcCC-CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            3 VYTIAATAEVEGSV-VGKLLGQD-NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         3 ~~~La~NAG~d~~~-v~kL~~~~-~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .++|++|+|+|.-+ +.+|...+ ....|+|..+|+-.+-...||||-+.|+++.|.++  +|+.+|-+|.|+..
T Consensus       440 pk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~~~~~~gi~Dny~v~~~~l~s~~via~nlLlvDEi~rA  514 (520)
T KOG0359|consen  440 PKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEIIRA  514 (520)
T ss_pred             hHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCccchhhccccchHHHHHHHhhhhHHHHHHHHHHHHHHHc
Confidence            47899999999999 88886552 23469999999999999999999999999999999  99999999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1we3_A	543	Crystal Structure Of The Chaperonin Complex Cpn60CP		3e-07
1iok_A	545	Crystal Structure Of Chaperonin-60 From Paracoccus		2e-05

>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 2   PVYTIAATAEVEGSV-VGKLLGQ-DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           P   IA  A  EGSV V ++L +  NP  G++A  GE+VD+++ GI+DP KV R     A
Sbjct: 449 PARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 508
Query: 60  TSM 62
            S+
Sbjct: 509 ASI 511

>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGAT 60
           P+  IA  A V+G+VV GK+    +   G++A   EY D+ K G++DP KV+R     A 
Sbjct: 450 PMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAA 509
Query: 61  SM 62
           S+
Sbjct: 510 SV 511

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	1e-14
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	1e-13
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	2e-13
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	2e-13

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545

 Score = 66.4 bits (163), Expect = 1e-14
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 2   PVYTIAATAEVEGSVV-GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P+  IA  A V+G+VV GK+    +   G++A   EY D+ K G++DP KV+R
Sbjct: 450 PMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVR 502

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547

 Score = 63.7 bits (156), Expect = 1e-13
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P+  I      E SVV   +   + N GY+A   EY ++I  GILDP KV R
Sbjct: 449 PLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTR 500

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P+  IA  + +E  VV + +       G +A  G Y DL+  G+ DP+KV R
Sbjct: 447 PLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTR 498

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 2   PVYTIAATAEVEGSVV-GKLL-GQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P   IA  A  EGSV+  ++L    NP  G++A  GE+VD+++ GI+DP KV R
Sbjct: 449 PARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTR 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3ruv_A	543	Chaperonin, CPN; double-ring, protein folding mach	99.89
1iok_A	545	Chaperonin 60; chaperone; 3.20A {Paracoccus denitr	99.88
1kp8_A	547	Groel protein; chaperonin, assisted protein foldin	99.87
1we3_A	543	CPN60(groel); chaperonin, chaperone, groel, HSP60,	99.86
3rtk_A	546	60 kDa chaperonin 2; heat shock protein, chaperone	99.85
3aq1_B	500	Thermosome subunit; group II chaperonin, protein f	99.85
3p9d_G	550	T-complex protein 1 subunit ETA; HSP60, eukaryotic	99.84
1a6d_A	545	Thermosome (alpha subunit); group II chaperonin, C	99.82
1q3q_A	548	Thermosome alpha subunit; chaperone, chaperonin; H	99.81
1a6d_B	543	Thermosome (beta subunit); group II chaperonin, CC	99.81
3p9d_B	527	T-complex protein 1 subunit beta; HSP60, eukaryoti	99.8
3ko1_A	553	Chaperonin; 9-fold symmetry, double ring, ATP hydr	99.8
3p9d_A	559	T-complex protein 1 subunit alpha; HSP60, eukaryot	99.8
3p9d_C	590	T-complex protein 1 subunit gamma; HSP60, eukaryot	99.79
3iyg_B	513	T-complex protein 1 subunit beta; TRIC/CCT, asymme	99.79
3iyg_G	515	T-complex protein 1 subunit gamma; TRIC/CCT, asymm	99.78
3p9d_E	562	T-complex protein 1 subunit epsilon; HSP60, eukary	99.78
3p9d_F	546	T-complex protein 1 subunit zeta; HSP60, eukaryoti	99.78
3iyg_D	518	T-complex protein 1 subunit delta; TRIC/CCT, asymm	99.77
3iyg_Q	512	T-complex protein 1 subunit theta; TRIC/CCT, asymm	99.77
3iyg_H	515	T-complex protein 1 subunit ETA; TRIC/CCT, asymmet	99.77
3p9d_H	568	T-complex protein 1 subunit theta; HSP60, eukaryot	99.77
3iyg_E	515	T-complex protein 1 subunit; TRIC/CCT, asymmetric,	99.77
3p9d_D	528	T-complex protein 1 subunit delta; HSP60, eukaryot	99.77
3iyg_Z	517	T-complex protein 1 subunit zeta; TRIC/CCT, asymme	99.77
3iyg_A	529	T-complex protein 1 subunit alpha; TRIC/CCT, asymm	99.76

>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A

Probab=99.89  E-value=1.8e-23  Score=169.94  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=69.6

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC----CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD----NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~----~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.+    +.++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       439 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~  518 (543)
T 3ruv_A          439 VIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAA  518 (543)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTCSEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCCccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheec
Confidence            3789999999999999 99998742    46799999999999999999999999999999999  99999999999999


Q ss_pred             CCccchhhhhccCCCCCCCccC
Q 034233           74 DPERKHKKYKKKKKLDDVGIIQ   95 (100)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~   95 (100)
                      .|..++...++|++|+|||..+
T Consensus       519 ~~~~~~~~~~~~~~~~~~~~~~  540 (543)
T 3ruv_A          519 EKLRGAPDMGDMGGMPGMGGMP  540 (543)
T ss_dssp             C---------------------
T ss_pred             CccCCCCCCCCCCCCCCCCCCC
Confidence            8876654444445555554433

>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1

Probab=99.88  E-value=4.8e-23  Score=167.79  Aligned_cols=92  Identities=30%  Similarity=0.461  Sum_probs=71.9

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +++||+.++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..|++
T Consensus       449 ~ip~~La~NaG~d~~~vv~~l~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  528 (545)
T 1iok_A          449 APMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKPEP  528 (545)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC--
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHhHHHhhccCCcc
Confidence            3899999999999999 9999987677899999999999999999999999999999999  999999999999998865


Q ss_pred             chhhhhccCCCCCCCc
Q 034233           78 KHKKYKKKKKLDDVGI   93 (100)
Q Consensus        78 ~~~~~~~~~~~~~~~~   93 (100)
                      ++ +..+|++|+|||.
T Consensus       529 ~~-~~~~~~~~~~~~~  543 (545)
T 1iok_A          529 KA-PAGGMPDMGGMGG  543 (545)
T ss_dssp             ----------------
T ss_pred             CC-CCCCCCCCCCCCC
Confidence            43 2244555555553

>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...

Probab=99.87  E-value=1.5e-22  Score=165.03  Aligned_cols=77  Identities=30%  Similarity=0.405  Sum_probs=71.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +++||+. +.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..|++
T Consensus       448 ~ip~~la~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~  526 (547)
T 1kp8_A          448 APLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKN  526 (547)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhc-CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCcc
Confidence            3899999999999999 9999976 57899999999999999999999999999999999  999999999999998865


Q ss_pred             c
Q 034233           78 K   78 (100)
Q Consensus        78 ~   78 (100)
                      +
T Consensus       527 ~  527 (547)
T 1kp8_A          527 D  527 (547)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*

Probab=99.86  E-value=4.7e-22  Score=161.84  Aligned_cols=91  Identities=34%  Similarity=0.562  Sum_probs=72.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC-CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ-DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE   76 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~-~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~   76 (100)
                      .|.++||+|||+|+.+ +++||+. ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..|+
T Consensus       448 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~  527 (543)
T 1we3_A          448 EPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPE  527 (543)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECSC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHhcCCCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            3899999999999999 9999975 357899999999999999999999999999999999  99999999999999887


Q ss_pred             cchhhhhccCCCCCCC
Q 034233           77 RKHKKYKKKKKLDDVG   92 (100)
Q Consensus        77 ~~~~~~~~~~~~~~~~   92 (100)
                      ++++.++ +.+++|||
T Consensus       528 ~~~~~~~-~~~~~~~~  542 (543)
T 1we3_A          528 KKESTPA-SAGAGDMD  542 (543)
T ss_dssp             C---------------
T ss_pred             cCCCCCC-CCCCCCCC
Confidence            6654444 34467775

>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A

Probab=99.85  E-value=4.2e-22  Score=162.44  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=63.6

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPER   77 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~~   77 (100)
                      .|.++||+|||+|+.+ +++||+. ..++|||+.+|+|+||++.|||||++|++++|++|  +|++|||+|++|++.|++
T Consensus       446 ~ip~~La~NaG~d~~~vv~~l~~~-~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~id~iI~~~~~~  524 (546)
T 3rtk_A          446 APLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEK  524 (546)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHHHHS-CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhh-cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3899999999999999 9999986 45599999999999999999999999999999999  999999999999998877


Q ss_pred             chhhhhccCCCCCC
Q 034233           78 KHKKYKKKKKLDDV   91 (100)
Q Consensus        78 ~~~~~~~~~~~~~~   91 (100)
                      ++...++.+.|+||
T Consensus       525 ~~~~~~~~~~~~~~  538 (546)
T 3rtk_A          525 EKASVPGGGDMGGM  538 (546)
T ss_dssp             --------------
T ss_pred             CCCCCCCCCCcCcc
Confidence            66443444444444

>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}

Probab=99.85  E-value=6.6e-22  Score=159.29  Aligned_cols=90  Identities=18%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       397 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~  476 (500)
T 3aq1_B          397 VIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVASK  476 (500)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3889999999999999 9999864   345799999999999999999999999999999999  999999999999998


Q ss_pred             CccchhhhhccCCCCCCC
Q 034233           75 PERKHKKYKKKKKLDDVG   92 (100)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~   92 (100)
                      |+.+++ + +|++|+|||
T Consensus       477 ~~~~~~-~-~~g~~~~~~  492 (500)
T 3aq1_B          477 GSANQG-M-GPGGLPDMP  492 (500)
T ss_dssp             ------------------
T ss_pred             ccCCCC-C-CCCCCCCCC
Confidence            865543 2 355444443

>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*

Probab=99.84  E-value=1e-21  Score=159.92  Aligned_cols=84  Identities=11%  Similarity=0.009  Sum_probs=72.1

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +++||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       448 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~  527 (550)
T 3p9d_G          448 VIPRQLCENAGFDAIEILNKLRLAHSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNK  527 (550)
T ss_dssp             HHHHHHHHTSCSCHHHHHHHHHHHHHHSCSCCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCC
Confidence            3889999999999999 9999875   356799999999999999999999999999999999  999999999999998


Q ss_pred             Cccchhhhhc
Q 034233           75 PERKHKKYKK   84 (100)
Q Consensus        75 ~~~~~~~~~~   84 (100)
                      |++++...++
T Consensus       528 ~~~~~~~~~~  537 (550)
T 3p9d_G          528 GSESANAGMM  537 (550)
T ss_dssp             CCC-------
T ss_pred             CcccccCCCC
Confidence            8766654333

>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*

Probab=99.82  E-value=6.9e-21  Score=154.76  Aligned_cols=77  Identities=18%  Similarity=0.260  Sum_probs=66.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|...
T Consensus       443 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~  522 (545)
T 1a6d_A          443 IIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASK  522 (545)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC---
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecccCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3789999999999999 9999864   345799999999999999999999999999999999  999999999999998


Q ss_pred             Ccc
Q 034233           75 PER   77 (100)
Q Consensus        75 ~~~   77 (100)
                      |++
T Consensus       523 ~~~  525 (545)
T 1a6d_A          523 KST  525 (545)
T ss_dssp             ---
T ss_pred             cCC
Confidence            765

>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A

Probab=99.81  E-value=2e-20  Score=152.08  Aligned_cols=79  Identities=18%  Similarity=0.385  Sum_probs=70.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|...
T Consensus       446 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~  525 (548)
T 1q3q_A          446 IIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  525 (548)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCCCCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3789999999999999 9999965   246799999999999999999999999999999999  999999999999998


Q ss_pred             Cccch
Q 034233           75 PERKH   79 (100)
Q Consensus        75 ~~~~~   79 (100)
                      |++++
T Consensus       526 ~~~~~  530 (548)
T 1q3q_A          526 ATKPE  530 (548)
T ss_dssp             C----
T ss_pred             CcCCC
Confidence            76543

>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B

Probab=99.81  E-value=2.2e-20  Score=151.62  Aligned_cols=89  Identities=17%  Similarity=0.275  Sum_probs=67.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       444 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~  523 (543)
T 1a6d_B          444 EIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATK  523 (543)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC--
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCCCCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3789999999999999 9999864   346799999999999999999999999999999999  999999999999998


Q ss_pred             CccchhhhhccCCCC
Q 034233           75 PERKHKKYKKKKKLD   89 (100)
Q Consensus        75 ~~~~~~~~~~~~~~~   89 (100)
                      |+++++.++..+.|+
T Consensus       524 ~~~~~~~~~~~~~~~  538 (543)
T 1a6d_B          524 SSSSSSNPPKSGSSS  538 (543)
T ss_dssp             ---------------
T ss_pred             ccCCCCCCCCCCCcc
Confidence            876665555555554

>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*

Probab=99.80  E-value=1.4e-20  Score=152.30  Aligned_cols=79  Identities=23%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +++||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       439 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  518 (527)
T 3p9d_B          439 QLPTILADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRAR  518 (527)
T ss_dssp             HHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCCSSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEECCCCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcC
Confidence            3889999999999999 9999875   356799999999999999999999999999999999  999999999999998


Q ss_pred             Cccch
Q 034233           75 PERKH   79 (100)
Q Consensus        75 ~~~~~   79 (100)
                      |+++.
T Consensus       519 ~~~~~  523 (527)
T 3p9d_B          519 PRTAN  523 (527)
T ss_dssp             -----
T ss_pred             CcccC
Confidence            76543

>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}

Probab=99.80  E-value=2.6e-20  Score=151.81  Aligned_cols=79  Identities=18%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---C-CCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---N-PNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~-~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.+   + .++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       453 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  532 (553)
T 3ko1_A          453 SLVSILIENAGFDPIDLLMKLRSTHENENNKWYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSA  532 (553)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEETTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEEeecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHh
Confidence            3789999999999999 99999763   2 6799999999999999999999999999999999  99999999999999


Q ss_pred             CCccch
Q 034233           74 DPERKH   79 (100)
Q Consensus        74 ~~~~~~   79 (100)
                      .|..++
T Consensus       533 ~~~~~~  538 (553)
T 3ko1_A          533 GKKSGG  538 (553)
T ss_dssp             ------
T ss_pred             hhhccC
Confidence            876655

>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*

Probab=99.80  E-value=4.5e-20  Score=150.42  Aligned_cols=79  Identities=28%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---CC------------CeeEeccCCceechhhCCcccChhHHHHHHHHH--HHH
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---NP------------NLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSM   62 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~------------~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~   62 (100)
                      .|.++||+|||+|+.+ +.+||+.+   +.            ++|||+.+|+|+||++.|||||++||+++|++|  +|+
T Consensus       457 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~  536 (559)
T 3p9d_A          457 IIPKTLAVNAAKDSSELVAKLRSYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACV  536 (559)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHhccccccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHH
Confidence            3789999999999999 99998752   33            689999999999999999999999999999999  999


Q ss_pred             HhccccceeecCCccch
Q 034233           63 FLNKLREGQLEDPERKH   79 (100)
Q Consensus        63 ~iL~~d~vV~~~~~~~~   79 (100)
                      +|||+|++|+..|++++
T Consensus       537 ~iL~id~ii~~~~~~~~  553 (559)
T 3p9d_A          537 AILRIDTMITVDPEPPK  553 (559)
T ss_dssp             HHHTEEEEEECCCCCCC
T ss_pred             HHHhHHhhhhcCCcccc
Confidence            99999999998876553

>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B

Probab=99.79  E-value=6.8e-20  Score=150.51  Aligned_cols=76  Identities=20%  Similarity=0.225  Sum_probs=70.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       507 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~  586 (590)
T 3p9d_C          507 CIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWEPEVIKQQSVKTAIESACLLLRVDDIVSGV  586 (590)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCEEHHHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3899999999999999 9999874   467899999999999999999999999999999999  999999999999876


Q ss_pred             Cc
Q 034233           75 PE   76 (100)
Q Consensus        75 ~~   76 (100)
                      |+
T Consensus       587 ~~  588 (590)
T 3p9d_C          587 RK  588 (590)
T ss_dssp             C-
T ss_pred             CC
Confidence            54

>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A

Probab=99.79  E-value=5.6e-20  Score=148.44  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=69.9

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|+..
T Consensus       432 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~  511 (513)
T 3iyg_B          432 MLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAA  511 (513)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCccchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3889999999999999 9999875   356799999999999999999999999999999999  999999999999876


Q ss_pred             C
Q 034233           75 P   75 (100)
Q Consensus        75 ~   75 (100)
                      |
T Consensus       512 ~  512 (513)
T 3iyg_B          512 P  512 (513)
T ss_pred             C
Confidence            5

>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.78  E-value=1.3e-19  Score=146.36  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC----CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD----NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~----~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.+    +.++|||+.+|+|.||++.|||||++||+++|++|  +|++|||+|++|..
T Consensus       434 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  513 (515)
T 3iyg_G          434 VIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG  513 (515)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcccccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence            4789999999999999 99998752    45799999999999999999999999999999999  99999999999875


Q ss_pred             C
Q 034233           74 D   74 (100)
Q Consensus        74 ~   74 (100)
                      .
T Consensus       514 ~  514 (515)
T 3iyg_G          514 H  514 (515)
T ss_pred             C
Confidence            3

>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*

Probab=99.78  E-value=1.8e-19  Score=146.99  Aligned_cols=75  Identities=15%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.    ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       478 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  557 (562)
T 3p9d_E          478 TIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLGYGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIIS  557 (562)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTTTBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3789999999999999 9999864    356899999999999999999999999999999999  99999999999987


Q ss_pred             CC
Q 034233           74 DP   75 (100)
Q Consensus        74 ~~   75 (100)
                      .+
T Consensus       558 ~~  559 (562)
T 3p9d_E          558 GK  559 (562)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*

Probab=99.78  E-value=8.9e-20  Score=148.17  Aligned_cols=79  Identities=19%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC--------CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ--------DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLRE   69 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~--------~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~   69 (100)
                      .|.++||+|||+|+.+ +.+||+.        ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|+
T Consensus       453 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~  532 (546)
T 3p9d_F          453 VIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDE  532 (546)
T ss_dssp             HHHHHHHTTTCCTTTTCCHHHHHHHHHHTTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhhhhhcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999 9999864        346799999999999999999999999999999999  9999999999


Q ss_pred             eeecCCccch
Q 034233           70 GQLEDPERKH   79 (100)
Q Consensus        70 vV~~~~~~~~   79 (100)
                      +|+..+...+
T Consensus       533 ii~~~~~~~~  542 (546)
T 3p9d_F          533 LLRAGRSTLK  542 (546)
T ss_dssp             EEEECCSSCC
T ss_pred             HHcCCcccCC
Confidence            9988654433

>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.77  E-value=3e-19  Score=144.29  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       439 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  517 (518)
T 3iyg_D          439 VIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNT  517 (518)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEec
Confidence            3889999999999999 9999874   356799999999999999999999999999999999  99999999999875

>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.77  E-value=1.8e-19  Score=145.27  Aligned_cols=73  Identities=18%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCC--ceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKG--EYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~--~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      .|.++||+|||+|+.+ +.+||+.   ++.++|||+.++  +|+||++.|||||++||+++|++|  +|++|||+|++|+
T Consensus       431 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~  510 (512)
T 3iyg_Q          431 AIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDMLEAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIM  510 (512)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchHhccCeEcHHHHHHHHHHHHHHHHHHHhHhHhee
Confidence            3889999999999999 9999874   467899999965  999999999999999999999999  9999999999987


Q ss_pred             c
Q 034233           73 E   73 (100)
Q Consensus        73 ~   73 (100)
                      .
T Consensus       511 ~  511 (512)
T 3iyg_Q          511 A  511 (512)
T ss_pred             c
Confidence            5

>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.77  E-value=1.6e-19  Score=145.97  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=67.9

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.+   +.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       435 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  513 (515)
T 3iyg_H          435 IIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKN  513 (515)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeCCCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4889999999999999 99998752   45689999999999999999999999999999999  99999999999875

>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*

Probab=99.77  E-value=5.8e-21  Score=155.94  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=58.9

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcCC-----------CCCeeEeccCCc---eechhhCCcccChhHHHHHHHHH--HHHHh
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQD-----------NPNLGYDATKGE---YVDLIKEGILDPLKVIRKVFIGA--TSMFL   64 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~~-----------~~~~G~d~~~~~---~~Dm~~~GIiDP~~V~~~al~~A--~a~~i   64 (100)
                      |.++||+|||+|+.+ +.+||+.+           +.++|||+.+|+   |.||++.|||||++||+++|++|  +|++|
T Consensus       459 ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~i  538 (568)
T 3p9d_H          459 VPRTLAETAGLDVNEVLPNLYAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTV  538 (568)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHH
Confidence            789999999999999 99999763           347899999997   99999999999999999999999  99999


Q ss_pred             ccccceeecCCccchhhhh--ccCCCCC
Q 034233           65 NKLREGQLEDPERKHKKYK--KKKKLDD   90 (100)
Q Consensus        65 L~~d~vV~~~~~~~~~~~~--~~~~~~~   90 (100)
                      ||+|++|+..|...++.++  +.+.||+
T Consensus       539 L~iD~ii~~~~~~~~~~~~~~~~~~~~~  566 (568)
T 3p9d_H          539 LSIDQIIMAKKAGGPRAPQGPRPGNWDQ  566 (568)
T ss_dssp             ----------------------------
T ss_pred             HhHHHHhhccccCCCCCCCCCCCCCCCC
Confidence            9999999999887776443  3446764

>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.77  E-value=2.2e-19  Score=144.95  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC----CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ----DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~----~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.    ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       435 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~  514 (515)
T 3iyg_E          435 VIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP  514 (515)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence            3889999999999999 9999864    356799999999999999999999999999999999  99999999999865

>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*

Probab=99.77  E-value=2.1e-19  Score=145.63  Aligned_cols=73  Identities=18%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---CCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      .|.++||+|||+|+.+ +.+||+.+   +.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|+.
T Consensus       449 ~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  527 (528)
T 3p9d_D          449 VIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFS  527 (528)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCCCSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhccCCccceecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheec
Confidence            3889999999999999 99998753   56799999999999999999999999999999999  99999999999875

>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.77  E-value=2e-19  Score=145.38  Aligned_cols=71  Identities=17%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeec
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLE   73 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~   73 (100)
                      | ++||+|||+|+.+ +.+||+.   ++.++|||+.+|+|+||++.|||||++||+++|++|  +|++|||+|++|..
T Consensus       440 P-~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~  516 (517)
T 3iyg_Z          440 P-KVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA  516 (517)
T ss_pred             H-HHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCcccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            7 9999999999999 9999875   356799999999999999999999999999999999  99999999999864

>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}

Probab=99.76  E-value=4.6e-19  Score=143.52  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCC---C--------CCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQD---N--------PNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNK   66 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~---~--------~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~   66 (100)
                      .|.++||+|||+|+.+ +.+||+.+   +        .++|||+.+|++.||++.|||||++||+++|++|  +|++|||
T Consensus       441 ~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~  520 (529)
T 3iyg_A          441 VIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILR  520 (529)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccCceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHh
Confidence            3789999999999999 99998752   2        5699999999999999999999999999999999  9999999


Q ss_pred             ccceeecCC
Q 034233           67 LREGQLEDP   75 (100)
Q Consensus        67 ~d~vV~~~~   75 (100)
                      +|++|...|
T Consensus       521 iD~ii~~~~  529 (529)
T 3iyg_A          521 IDDLIKLHP  529 (529)
T ss_pred             HHhhhcCCC
Confidence            999997743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1sjpa1	180	a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My	2e-12
d1we3a1	255	a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The	3e-07
d1a6db1	243	a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai	7e-07
d1a6da1	245	a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai	3e-06
d1q3qa1	258	a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain	4e-06
d1ioka1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par	2e-05
d1kp8a1	252	a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc	1e-04

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score = 57.5 bits (138), Expect = 2e-12
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           P+  IA  + +E  VV + +       G +A  G Y DL+  G+ DP+KV R     A S
Sbjct: 112 PLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAAS 171

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.1 bits (103), Expect = 3e-07
 Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 2/62 (3%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQD--NPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA 59
           P   IA  A  EGSV+ + +  +  NP  G++A  GE+VD+++ GI+DP KV R     A
Sbjct: 178 PARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNA 237

Query: 60  TS 61
            S
Sbjct: 238 AS 239

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

 Score = 43.2 bits (101), Expect = 7e-07
 Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 1   MPVYTIAATAEVEGSVVGKLLG----QDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVF 56
                +A  A ++   +   L     + N   G +   GE  D++K G+++P++V ++  
Sbjct: 166 EIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAI 225

Query: 57  IGATS 61
             AT 
Sbjct: 226 ESATE 230

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 1   MPVYTIAATAEVEGSVV----GKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVF 56
           +   T+A  A ++             +   ++G D       D+  +G++DPL+V     
Sbjct: 169 IIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHAL 228

Query: 57  IGATS 61
             A  
Sbjct: 229 ESAVE 233

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 23  QDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
                +G D  +G+  D++++GI++PL+V ++    A+ 
Sbjct: 204 NRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASE 242

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (90), Expect = 2e-05
 Identities = 17/46 (36%), Positives = 25/46 (54%)

Query: 16  VVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGATS 61
           V GK+    +   G++A   EY D+ K G++DP KV+R     A S
Sbjct: 191 VAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAAS 236

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 2   PVYTIAATAEVEGSVVGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIR 53
           P+  I      E SVV   +   + N GY+A   EY ++I  GILDP KV R
Sbjct: 176 PLRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTR 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1sjpa1	180	GroEL, E domain {Mycobacterium tuberculosis, GroEL	99.81
d1a6db1	243	Thermosome, E domain {Archaeon Thermoplasma acidop	99.74
d1ioka1	252	GroEL, E domain {Paracoccus denitrificans [TaxId:	99.7
d1we3a1	255	GroEL, E domain {Thermus thermophilus [TaxId: 274]	99.67
d1a6da1	245	Thermosome, E domain {Archaeon Thermoplasma acidop	99.62
d1kp8a1	252	GroEL, E domain {Escherichia coli [TaxId: 562]}	99.59
d1q3qa1	258	Thermosome, E domain {Archaeon Thermococcus sp. ks	99.45

>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

Probab=99.81  E-value=6.6e-21  Score=134.55  Aligned_cols=67  Identities=28%  Similarity=0.421  Sum_probs=62.7

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLR   68 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d   68 (100)
                      +|++||++|||+|+.. +++++.. +.++|||+.+++|+||++.|||||++|+++||++|  +|++|||+|
T Consensus       111 ~p~~~I~~NaG~~~~~v~~~~~~~-~~~~G~d~~~~~~~dm~e~GIiDP~kV~~~AL~~A~s~a~~~ltte  180 (180)
T d1sjpa1         111 APLKQIAFNSGLEPGVVAEKVRNL-PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE  180 (180)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHTS-CTTEECCTTTCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhcCCCchhhhhhhhcc-ccccCccccccccccHHHcCCcCcHHHHHHHHHhHHHHHHHHHhCC
Confidence            4999999999999999 9998765 67899999999999999999999999999999999  999999986

>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=99.74  E-value=1.2e-18  Score=127.78  Aligned_cols=71  Identities=20%  Similarity=0.360  Sum_probs=66.6

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceee
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQL   72 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~   72 (100)
                      |.++||+|||+|+.+ +.+||..   ++.++|||+.+|++.||++.|||||+.|++++|+.|  +|++|||+|++|+
T Consensus       167 ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         167 IPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             cCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCEEeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            679999999999999 9999864   578899999999999999999999999999999999  9999999999974

>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=1e-17  Score=122.56  Aligned_cols=75  Identities=33%  Similarity=0.542  Sum_probs=71.4

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      +|++++++|+|.|+.. +++.+...+..+|||+.+++|+||++.||+||++|++++|++|  +|++||++|++|++.|
T Consensus       175 ~p~~~i~~naG~dg~~vv~~~~~~~~~~~g~~~~~~~~g~~~~~GiidP~kVt~~al~~A~sva~~lltte~~i~~~p  252 (252)
T d1ioka1         175 APMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAEKP  252 (252)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHSCCSTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred             HHHHHHHhccCCCcceEEEeecccCcCCEEEEceeeeEeeeecccccCcHHHHHHHHHHHHhhhhHHHhhceeeecCC
Confidence            4899999999999999 9999887778999999999999999999999999999999999  9999999999999876

>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=5.9e-17  Score=117.97  Aligned_cols=75  Identities=37%  Similarity=0.635  Sum_probs=68.9

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcC-CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCC
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQ-DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDP   75 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~-~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~   75 (100)
                      +|.++|++|+|+++.+ +.++... .+.++|||+.+|++.||++.||+||+.|+++++++|  ++++||++|++|++.|
T Consensus       177 ~~~~~~~~nag~~~~~~~~~~~~~~~~~~~g~d~~~g~~~D~~e~Giidp~~V~~~a~~~A~~~a~~iL~~d~~I~~~p  255 (255)
T d1we3a1         177 EPARQIAENAGYEGSVIVQQILAETKNPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP  255 (255)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHCCSCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECS
T ss_pred             hhHHHHHhhcccccceeeeeeeecccCCceeEEeeccEEeehhhcCCcCchHhhHHHHHHHHHHhchHhhcchhhhcCC
Confidence            3889999999999998 7776554 467899999999999999999999999999999999  9999999999999876

>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]

Probab=99.62  E-value=2.7e-16  Score=114.75  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhcccccee
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQ   71 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV   71 (100)
                      +.++|++|+|+|+.+ +.+++..   .+.++|+|..++.+.||++.|||||+.||+++|++|  +|++|||+|++|
T Consensus       170 ip~~laeNaG~D~i~iv~~l~~~~~~~~~~~Gv~~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii  245 (245)
T d1a6da1         170 IPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI  245 (245)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC
T ss_pred             hhhhhhccCCCCchhhhhhhhcccccCCceeeEEccCCeEeehHhcCccccHHHHHHHHHHHHHHHHHHHhhceeC
Confidence            568999999999999 9999864   467899999999999999999999999999999999  999999999986

>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: GroEL chaperone, ATPase domain
domain: GroEL, E domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=1.1e-15  Score=111.71  Aligned_cols=75  Identities=31%  Similarity=0.412  Sum_probs=70.1

Q ss_pred             ChHHHHHhhcCCChHH-HHHHHcCCCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecCCc
Q 034233            1 MPVYTIAATAEVEGSV-VGKLLGQDNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLEDPE   76 (100)
Q Consensus         1 ~P~~~La~NAG~d~~~-v~kL~~~~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~~~   76 (100)
                      +|+++++.|+|.++.. +.+++.. ++++|||..++.|+||++.|++||++|+++++++|  +++++|++|+.|++.|+
T Consensus       175 ~p~~~i~~nag~~g~~~~~~v~~~-~~~~g~~~~~~~~g~~~~~G~idP~~Vt~~al~~a~~~~~~iL~te~~i~~~pe  252 (252)
T d1kp8a1         175 APLRQIVLNCGEEPSVVANTVKGG-DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK  252 (252)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHS-CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC
T ss_pred             HHHHHHHHhhhhcccccceeeeec-CCCeeEEEEEEEEEEEEeeccCCcceeccHhhhhheeccceeEeecccccCCCC
Confidence            4899999999999999 8888665 67899999999999999999999999999999999  99999999999999874

>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}

class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]

Probab=99.45  E-value=5.2e-14  Score=103.05  Aligned_cols=73  Identities=19%  Similarity=0.393  Sum_probs=67.2

Q ss_pred             hHHHHHhhcCCChHH-HHHHHcC---CCCCeeEeccCCceechhhCCcccChhHHHHHHHHH--HHHHhccccceeecC
Q 034233            2 PVYTIAATAEVEGSV-VGKLLGQ---DNPNLGYDATKGEYVDLIKEGILDPLKVIRKVFIGA--TSMFLNKLREGQLED   74 (100)
Q Consensus         2 P~~~La~NAG~d~~~-v~kL~~~---~~~~~G~d~~~~~~~Dm~~~GIiDP~~V~~~al~~A--~a~~iL~~d~vV~~~   74 (100)
                      +.++|++|+|+|+.+ +.+++..   ++.++|+|+.+|.+.||++.|||||+.|+.++++.|  ++++||++|.+|+.+
T Consensus       179 Ip~~la~N~G~d~i~~v~~l~~~~~~~~~~~gvdv~~G~~~D~~~~Gii~p~~vk~~~l~~A~e~a~~IL~iD~iI~ak  257 (258)
T d1q3qa1         179 IPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAK  257 (258)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             hhhhhhhhcCCccceehhhhhhhcccCCCceEEEEECCEEeEchHcCccccHHHHHHHHHHHHHHhCcceeEccEEeeC
Confidence            457899999999999 9999753   467899999999999999999999999999999999  999999999999864