Citrus Sinensis ID: 034260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Secondary Structure (PSIPRED)
ccccccEEEEccccHHHHHHHHHHHccccEEEEEcccccccccccHHHHHcEEEEEEEEEEEEEHHEHHEEEEEEEEEEcccccHHHHHHHEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccHHHHHHHEEcccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgagidvsfdcaglnKTMSTVLdatragdkvclvgmghhdmtvpltPAAARYLIYGFLFFFFLVLGYSVIYFRKmlyisgqtpkLIQATLFDLFFFFYSP
Flexible Loop (DISEMBL)
MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Low Complexity Region (SEG)
MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGflfffflVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Disordered region (IsUnstruct)
****IDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFY**
Disordered Region (DISOPRED)
***GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Disordered Region (DISEMBL)
MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Disordered Region (DISPRO)
**AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTPKLIQATLFDLFFFFYSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q1PSI9	366	L-idonate 5-dehydrogenase	no	no	0.51	0.139	0.745	8e-17

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/51 (74%), Positives = 42/51 (82%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           M  G+DVSFDC G NKTMST L+ATRAG KVCLVG+   +MTVPLTPAAAR
Sbjct: 253 MVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAR 303

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
350538545	355	sorbitol related enzyme [Solanum lycoper	0.51	0.143	0.843	1e-18
224120122	364	predicted protein [Populus trichocarpa]	0.51	0.140	0.784	9e-18
356559880	364	PREDICTED: L-idonate 5-dehydrogenase-lik	0.51	0.140	0.803	3e-17
255539581	364	alcohol dehydrogenase, putative [Ricinus	0.51	0.140	0.764	5e-17
358345353	317	L-idonate 5-dehydrogenase [Medicago trun	0.51	0.160	0.764	8e-17
358345351	362	L-idonate 5-dehydrogenase [Medicago trun	0.51	0.140	0.764	8e-17
217072128	362	unknown [Medicago truncatula] gi|3885198	0.51	0.140	0.764	8e-17
225469310	365	PREDICTED: L-idonate 5-dehydrogenase [Vi	0.51	0.139	0.784	2e-16
147774828	346	hypothetical protein VITISV_036540 [Viti	0.51	0.147	0.784	2e-16
51971999	364	sorbitol dehydrogenase-like protein [Ara	0.51	0.140	0.803	2e-16

>gi|350538545|ref|NP_001234092.1| sorbitol related enzyme [Solanum lycopersicum] gi|78183416|dbj|BAE47038.1| sorbitol related enzyme [Solanum lycopersicum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/51 (84%), Positives = 44/51 (86%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MG GID SFDCAG NKTMST L ATR G KVCLVGMGHH+MTVPLTPAAAR
Sbjct: 242 MGGGIDASFDCAGFNKTMSTALGATRPGGKVCLVGMGHHEMTVPLTPAAAR 292

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120122|ref|XP_002318247.1| predicted protein [Populus trichocarpa] gi|222858920|gb|EEE96467.1| predicted protein [Populus trichocarpa]

 Score = 94.0 bits (232), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MG G+DV+FDCAG NKTMST L ATR G KVCL+GMGH++MTVPLTPAAAR
Sbjct: 251 MGTGVDVTFDCAGFNKTMSTALSATRPGGKVCLIGMGHNEMTVPLTPAAAR 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559880|ref|XP_003548224.1| PREDICTED: L-idonate 5-dehydrogenase-like [Glycine max]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MGAGIDV+FDCAG +KTMST L AT+ G KVCLVGMGH +MTVPLTPAAAR
Sbjct: 251 MGAGIDVTFDCAGFDKTMSTALSATQPGGKVCLVGMGHSEMTVPLTPAAAR 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539581|ref|XP_002510855.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223549970|gb|EEF51457.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MG G+DV+ DCAG NKTMS+ L ATR+G KVCLVGMGH++MTVPLTPAAAR
Sbjct: 251 MGTGVDVTLDCAGFNKTMSSALSATRSGGKVCLVGMGHNEMTVPLTPAAAR 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345353|ref|XP_003636745.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502680|gb|AES83883.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +GAG+DV+FDCAG NKTM+T L AT+ G KVCLVGMGH +MTVPLTPAAAR
Sbjct: 204 LGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAAR 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345351|ref|XP_003636744.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502679|gb|AES83882.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +GAG+DV+FDCAG NKTM+T L AT+ G KVCLVGMGH +MTVPLTPAAAR
Sbjct: 249 LGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAAR 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072128|gb|ACJ84424.1| unknown [Medicago truncatula] gi|388519843|gb|AFK47983.1| unknown [Medicago truncatula]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +GAG+DV+FDCAG NKTM+T L AT+ G KVCLVGMGH +MTVPLTPAAAR
Sbjct: 249 LGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAAR 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469310|ref|XP_002269895.1| PREDICTED: L-idonate 5-dehydrogenase [Vitis vinifera] gi|297741125|emb|CBI31856.3| unnamed protein product [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MGA +DVSFDCAG +KTMST L AT  G KVCLVGMGH++MTVPLTPAAAR
Sbjct: 252 MGARVDVSFDCAGFDKTMSTALSATSTGGKVCLVGMGHNEMTVPLTPAAAR 302

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774828|emb|CAN73444.1| hypothetical protein VITISV_036540 [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/51 (78%), Positives = 44/51 (86%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MGA +DVSFDCAG +KTMST L AT  G KVCLVGMGH++MTVPLTPAAAR
Sbjct: 233 MGARVDVSFDCAGFDKTMSTALSATSTGGKVCLVGMGHNEMTVPLTPAAAR 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971999|dbj|BAD44664.1| sorbitol dehydrogenase-like protein [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/51 (80%), Positives = 43/51 (84%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MG+ IDV+FDCAG NKTMST L ATR G KVCLVGMGH  MTVPLTPAAAR
Sbjct: 251 MGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPAAAR 301

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2173093	364	AT5G51970 [Arabidopsis thalian	0.51	0.140	0.803	1.3e-16
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.51	0.143	0.372	0.00055
FB|FBgn0024289	360	Sodh-1 "Sorbitol dehydrogenase	0.51	0.141	0.411	0.00093

TAIR|locus:2173093 AT5G51970 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 41/51 (80%), Positives = 43/51 (84%)

Query:     1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
             MG+ IDV+FDCAG NKTMST L ATR G KVCLVGMGH  MTVPLTPAAAR
Sbjct:   251 MGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPAAAR 301

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 94 (38.1 bits), Expect = 0.00055, P = 0.00055
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query:     1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
             +G   + + +C G+   + + + ATRAG  + LVG+G    TVPLT A+ R
Sbjct:   239 LGCKPEATIECTGVESAIQSGIYATRAGGTLVLVGLGSEMTTVPLTHASTR 289

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0024289 Sodh-1 "Sorbitol dehydrogenase 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 0.00093, P = 0.00093
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query:     1 MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
             MG   D S DC G   +    + ATR+G  V +VGMG  ++ +PL  A AR
Sbjct:   237 MGGQPDKSIDCCGAESSARLAIFATRSGGIVVVVGMGAAEIKLPLINALAR 287


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        93   0.00091  102 3  11 22  0.41    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  96 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.23u 0.18s 8.41t   Elapsed:  00:00:01
  Total cpu time:  8.23u 0.18s 8.41t   Elapsed:  00:00:01
  Start:  Fri May 10 19:16:32 2013   End:  Fri May 10 19:16:33 2013

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_XII1187	L-iditol 2-dehydrogenase (EC-1.1.1.14) (364 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_XVIII2895	xylose isomerase (EC-5.3.1.5) (477 aa)						•	•		0.919
	gw1.125.171.1	fructokinase (EC-2.7.1.4) (320 aa)	•					•			0.901
	eugene3.00070163	fructokinase (EC-2.7.1.4) (329 aa)	•					•			0.900
	gw1.II.2365.1	fructokinase (EC-2.7.1.4) (337 aa)						•			0.899
	gw1.8434.3.1	annotation not avaliable (125 aa)						•			0.899
	fgenesh4_pm.C_LG_IV000247	fructokinase (EC-2.7.1.4) (351 aa)						•			0.899
	fgenesh4_pm.C_LG_I000617	hexokinase (508 aa)						•			0.899
	fgenesh4_pg.C_LG_VII001238	hexokinase (EC-2.7.1.2) (502 aa)						•			0.899
	fgenesh4_pg.C_LG_IX001086	hexokinase (508 aa)						•			0.899
	eugene3.00151131	SubName- Full=Putative uncharacterized protein; (350 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-28
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	7e-13
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-07
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	4e-07
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-06
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	4e-06
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-05
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-05
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-05
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	8e-05
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-04
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	3e-04
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-04
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	6e-04
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	0.001
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	0.003
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	0.003

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  104 bits (262), Expect = 2e-28
 Identities = 43/51 (84%), Positives = 46/51 (90%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           MG GIDVSFDC G NKTMST L+ATRAG KVCLVGMGH++MTVPLTPAAAR
Sbjct: 251 MGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAR 301

Length = 364

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 62.1 bits (152), Expect = 7e-13
 Identities = 22/50 (44%), Positives = 30/50 (60%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           G G DV  +C G    + T + ATR G  V LVGMG  ++T+PL+ A+ R
Sbjct: 232 GKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLR 281

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTP 47
           G G D +F+  G   T+   L  TR G    +VGMG    TV L  
Sbjct: 249 GRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPA 294

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPA 48
             G D +F+C G  + M   L+AT  G    ++G+      +   P 
Sbjct: 252 DGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPF 298

Length = 366

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGM-GHHDMTVPLTPAAARYL-IYGFLF 59
           G G+DV  DC G   T+   L+  R G +V +VG+ G   +  PL     + L I G L 
Sbjct: 57  GRGVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLG 116

Length = 131

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           G G DV FD  G   T      A + G ++ +VG+G   +TV L+   AR
Sbjct: 230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIAR 279

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGM 36
           G G+DVSFDCAG+  T+ T +DA R       V +
Sbjct: 239 GGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAI 273

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT 42
            G G DV  +  G    +   L+A R G  V +VG+   +  
Sbjct: 235 GGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDI 276

Length = 350

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVP 44
           G G D+  + AG   T+   L   R G KV LVG+ + D+T+ 
Sbjct: 225 GRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLS 267

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHDMTVPLTPA 48
           G G+D SF+C G    M +  +    G     L+G+ H D      P 
Sbjct: 255 GGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPM 302

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 5   IDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
            DV F+ +G    +++ L   R G  V  VGM    + +PL    A+
Sbjct: 232 FDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAK 278

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 11/93 (11%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFF 60
            G G+DV  + +G  K +   L A   G +V L+G+    +T+  T      +I+  L  
Sbjct: 227 DGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFT----NKVIFKGLTI 282

Query: 61  FFLVLGYSVIYFRKMLYISGQTPKLIQATLFDL 93
           +        I  R M        +LIQ+   DL
Sbjct: 283 YG-------ITGRHMFETWYTVSRLIQSGKLDL 308

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIY 55
           G G DV  D  G  +T++  L   R G ++ +VG      +        R L++
Sbjct: 199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGG----TSGGPPLDDLRRLLF 248

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAA 50
           G G DV  +  G    +    D  R G  +  VG+ H     P     A
Sbjct: 233 GRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGV-HTAEEFPFPGLDA 280

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           G G D   D  G ++T++        G +  +VG G H   +P +     
Sbjct: 233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPT 281

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 4   GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYG 56
           G DV  +  G+ KT+   ++  R G  V + G+   D  V ++P    + I+ 
Sbjct: 226 GFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISP----FEIFQ 274

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVC-LVGMGHHDM 41
           G G+D SF+C G    M+  L++T+ G  V  +VG+     
Sbjct: 252 GGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAE 292

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.37
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.34
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.3
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.25
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.19
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.17
PLN02827	378	Alcohol dehydrogenase-like	99.13
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.12
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.1
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.09
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.09
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.06
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.06
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.04
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.04
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.03
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	98.99
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	98.98
PLN02740	381	Alcohol dehydrogenase-like	98.96
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	98.95
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	98.9
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	98.9
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	98.87
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	98.77
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	98.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	98.72
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	98.7
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	98.7
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	98.69
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	98.64
PRK10083	339	putative oxidoreductase; Provisional	98.53
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.51
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	98.49
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	98.49
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	98.46
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	98.46
PLN02702	364	L-idonate 5-dehydrogenase	98.43
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	98.4
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	98.39
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	98.38
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	98.37
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	98.33
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	98.33
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.32
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	98.32
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	98.32
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	98.31
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	98.28
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	98.26
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	98.25
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	98.22
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	98.2
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	98.2
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	98.2
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	98.17
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	98.15
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	98.15
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	98.14
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	98.14
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	98.11
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	98.1
PRK13771	334	putative alcohol dehydrogenase; Provisional	98.07
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	98.04
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	98.04
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	98.03
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	98.01
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	98.01
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	97.98
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	97.97
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	97.95
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	97.94
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	97.91
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	97.91
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	97.9
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	97.9
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	97.89
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.89
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	97.89
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	97.88
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	97.85
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	97.82
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	97.81
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	97.79
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	97.77
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	97.75
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	97.73
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	97.72
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	97.71
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	97.69
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	97.69
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	97.68
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	97.67
PTZ00354	334	alcohol dehydrogenase; Provisional	97.66
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	97.66
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	97.6
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	97.59
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	97.58
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	97.5
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.48
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.43
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	97.41
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	97.38
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	97.34
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	97.32
cd08252	336	AL_MDR Arginate lyase and other MDR family members	97.28
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	97.25
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	97.21
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	97.18
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	97.03
COG2130	340	Putative NADP-dependent oxidoreductases [General f	97.03
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	96.96
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	96.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	96.94
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	96.68
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	96.39
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.35
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	96.32
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	96.27
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	96.25
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	96.18
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	96.16
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	96.16
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.1
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	96.1
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	95.68
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.28
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	95.05
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	94.97
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	94.9
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.76
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.43
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	94.24
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	94.19
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	93.92
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	93.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.54
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	93.42
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	93.21
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	92.95
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	92.92
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	92.87
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	92.84
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	92.79
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	92.2
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	91.91
PLN02494	477	adenosylhomocysteinase	90.54
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	89.3
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	89.26
TIGR00438	188	rrmJ cell division protein FtsJ.	89.15
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	87.8
PRK08306	296	dipicolinate synthase subunit A; Reviewed	85.5
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	85.42
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	85.38
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	85.36
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	85.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	83.0
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	81.45
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	81.4
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	80.51
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	80.48
PTZ00075	476	Adenosylhomocysteinase; Provisional	80.06

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.45  E-value=3.2e-13  Score=85.31  Aligned_cols=71  Identities=21%  Similarity=0.354  Sum_probs=60.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|++|||+|.+.++++++++++++|+++++|... .+.+++...++.+++++.|      ++.++++++ +++++++
T Consensus        57 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~la  129 (130)
T PF00107_consen   57 RGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRG------SWGGSPEDFQEALQLLA  129 (130)
T ss_dssp             SSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEE------ESSGGHHHHHHHHHHHH
T ss_pred             ccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEE------EccCCHHHHHHHHHHhc
Confidence            479999999998899999999999999999999998 6778999999999999995      555555555 5566665

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.37  E-value=3.4e-12  Score=93.53  Aligned_cols=85  Identities=25%  Similarity=0.329  Sum_probs=68.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc-ccChHHHHhcCcEEEeEeeceeeee-echhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM-TVPLTPAAARYLIYGFLFFFFLVLG-YSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~-~i~~~~l~~k~~~i~Gs~~~~g~~~-~~~~~~-~~i~~l   78 (100)
                      |+|+|++|||+|++.++++++++++++|+++++|++.++. .++...++.|++++.|      +.+ +.+.++ +++.++
T Consensus       236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~g------s~~~~~~~~~~~~~~ll  309 (350)
T COG1063         236 GRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRG------SLRPSGREDFERALDLL  309 (350)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEe------ccCCCCcccHHHHHHHH
Confidence            4589999999999999999999999999999999998766 6888899999999996      433 334444 688899


Q ss_pred             hcCC---Ccceeeeecee
Q 034260           79 SGQT---PKLIQATLFDL   93 (100)
Q Consensus        79 ~~~~---~~~i~~~~~~~   93 (100)
                      +++.   .++| ++++++
T Consensus       310 ~~g~i~~~~li-t~~~~~  326 (350)
T COG1063         310 ASGKIDPEKLI-THRLPL  326 (350)
T ss_pred             HcCCCChhHce-EeeccH
Confidence            8874   4455 566654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.34  E-value=5.2e-12  Score=91.56  Aligned_cols=85  Identities=27%  Similarity=0.426  Sum_probs=73.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeech-hhHHHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSV-IYFRKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~-~~~~~i~~l~~~~   82 (100)
                      .+|++|||+|...+++.++.+++++|+++++|+.+...++++.++..||+++.      |+++|.. .|..++.++++++
T Consensus       242 ~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~------g~fry~~~~y~~ai~li~sGk  315 (354)
T KOG0024|consen  242 QPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLR------GSFRYCNGDYPTAIELVSSGK  315 (354)
T ss_pred             CCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeee------eeeeeccccHHHHHHHHHcCC
Confidence            49999999999999999999999999999999999999999999999999999      5777866 4457788999884


Q ss_pred             --Ccceeeeeceee
Q 034260           83 --PKLIQATLFDLF   94 (100)
Q Consensus        83 --~~~i~~~~~~~~   94 (100)
                        .|...|.+++++
T Consensus       316 i~~k~lIT~r~~~~  329 (354)
T KOG0024|consen  316 IDVKPLITHRYKFD  329 (354)
T ss_pred             cCchhheecccccc
Confidence              666666666653

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.30  E-value=1.1e-11  Score=88.79  Aligned_cols=87  Identities=10%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +.++|++|||+|.+.++++++++++++|+++++|....+.++++..++.|++++.|      +..+.++++ +.+.++.+
T Consensus       198 ~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~l~~~  271 (308)
T TIGR01202       198 RRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRI------AAEWQPGDLHAVRELIES  271 (308)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEE------ecccchhHHHHHHHHHHc
Confidence            35799999999998899999999999999999998776667777788899999985      444444555 66778877


Q ss_pred             CCC--cceeeeeceee
Q 034260           81 QTP--KLIQATLFDLF   94 (100)
Q Consensus        81 ~~~--~~i~~~~~~~~   94 (100)
                      +..  +.+.++.+||+
T Consensus       272 g~i~~~~~it~~~~l~  287 (308)
T TIGR01202       272 GALSLDGLITHQRPAS  287 (308)
T ss_pred             CCCChhhccceeecHH
Confidence            753  22344566765

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.25  E-value=3.4e-11  Score=85.18  Aligned_cols=88  Identities=17%  Similarity=0.283  Sum_probs=67.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC--CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH--HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~--~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++++|+++||+|.+.++++++++++++|+++.+|...  .+.++++..++.|++++.|      ++.+++.++ +++.++
T Consensus       185 ~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~l  258 (280)
T TIGR03366       185 GRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRG------VHNYEPRHLDQAVRFL  258 (280)
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEe------cCCCCHHHHHHHHHHH
Confidence            3579999999999899999999999999999999754  3567888889999999995      545544544 667788


Q ss_pred             hcC--C--Ccceeeeeceeee
Q 034260           79 SGQ--T--PKLIQATLFDLFF   95 (100)
Q Consensus        79 ~~~--~--~~~i~~~~~~~~~   95 (100)
                      .++  .  .+.+.++.|||+.
T Consensus       259 ~~~~~~~~~~~~it~~~~l~~  279 (280)
T TIGR03366       259 AANGQRFPFEELVGKPFPLAD  279 (280)
T ss_pred             HhhCCCCCHHHHhhccccccc
Confidence            753  2  3234457778763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.19  E-value=9e-11  Score=85.19  Aligned_cols=85  Identities=15%  Similarity=0.244  Sum_probs=64.2

Q ss_pred             cccEEEEccC---hHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAG---LNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G---~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      |+|++|||+|   .+.++++++++++++|+++++|....+.++++..++.|++++.|      +..++.+++ +.+.+++
T Consensus       222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g------~~~~~~~~~~~~~~~~~  295 (341)
T cd08237         222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVG------SSRSTREDFERAVELLS  295 (341)
T ss_pred             CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEE------ecccCHHHHHHHHHHHH
Confidence            6899999999   56789999999999999999998766667888888899999996      433434444 6677777


Q ss_pred             cC-----CCcceeeeeceee
Q 034260           80 GQ-----TPKLIQATLFDLF   94 (100)
Q Consensus        80 ~~-----~~~~i~~~~~~~~   94 (100)
                      ++     ..+.+.+..++++
T Consensus       296 ~~~~~~~~l~~~i~~~~~l~  315 (341)
T cd08237         296 RNPEVAEYLRKLVGGVFPVR  315 (341)
T ss_pred             hCCcccCChHHHhccccccc
Confidence            66     2333333556653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.17  E-value=2.3e-10  Score=82.87  Aligned_cols=85  Identities=18%  Similarity=0.272  Sum_probs=66.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTP   83 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~~~   83 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|......++++..++.|++++.|      +..+..++.+.+.++.++..
T Consensus       235 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g------~~~~~~~~~~~~~l~~~g~i  308 (343)
T PRK09880        235 YFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKG------SFRFTEEFNTAVSWLANGVI  308 (343)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEE------EeeccccHHHHHHHHHcCCC
Confidence            589999999998899999999999999999998766667888888899999996      43343344466778887753


Q ss_pred             --cceeeeeceee
Q 034260           84 --KLIQATLFDLF   94 (100)
Q Consensus        84 --~~i~~~~~~~~   94 (100)
                        +.+.++.++|+
T Consensus       309 ~~~~~i~~~~~l~  321 (343)
T PRK09880        309 NPLPLLSAEYPFT  321 (343)
T ss_pred             CchhheEEEEEHH
Confidence              23444666764

>PLN02827 Alcohol dehydrogenase-like

Probab=99.13  E-value=3.2e-10  Score=83.52  Aligned_cols=90  Identities=13%  Similarity=0.045  Sum_probs=65.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCCcccCh-HHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHDMTVPL-TPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +|+|+++||+|.+.++..++++++++ |+++++|....+.+++. ..++.+++++.|++.  +.+. +..++ +.+.++.
T Consensus       262 ~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~-~~~~~~~~~~~~~  338 (378)
T PLN02827        262 GGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLF--GGWK-PKSDLPSLVDKYM  338 (378)
T ss_pred             CCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeec--CCCc-hhhhHHHHHHHHH
Confidence            37999999999988899999999999 99999998765445544 457789999997553  2221 12334 5567777


Q ss_pred             cCCCcc--eeeeeceeee
Q 034260           80 GQTPKL--IQATLFDLFF   95 (100)
Q Consensus        80 ~~~~~~--i~~~~~~~~~   95 (100)
                      ++..+.  +.++.|+|+.
T Consensus       339 ~g~i~~~~~i~~~~~le~  356 (378)
T PLN02827        339 NKEIMIDEFITHNLSFDE  356 (378)
T ss_pred             cCCCChHHheEEEecHHH
Confidence            775444  4456677753

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.12  E-value=5.5e-10  Score=81.33  Aligned_cols=89  Identities=19%  Similarity=0.119  Sum_probs=65.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC--cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD--MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~--~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|+++||+|.+.++++++++++++|+++++|.....  .++++..++.+++++.+++.  +. ..+.+++ +.+.+++
T Consensus       244 ~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~~~~~~~~~~~l~~  320 (358)
T TIGR03451       244 FGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWY--GD-CLPERDFPMLVDLYL  320 (358)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeec--CC-CCcHHHHHHHHHHHH
Confidence            47999999999888999999999999999999987543  46777778899999997542  21 1223445 4567888


Q ss_pred             cCCC--cceeeeeceee
Q 034260           80 GQTP--KLIQATLFDLF   94 (100)
Q Consensus        80 ~~~~--~~i~~~~~~~~   94 (100)
                      ++..  +.+.++.+|++
T Consensus       321 ~g~l~~~~~i~~~~~l~  337 (358)
T TIGR03451       321 QGRLPLDAFVTERIGLD  337 (358)
T ss_pred             cCCCCchheEEEEecHH
Confidence            7753  32334566765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.10  E-value=6.2e-10  Score=82.10  Aligned_cols=84  Identities=10%  Similarity=0.114  Sum_probs=66.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|.+.++++++++++++|+++.+|....+.++++..++.+++++.|      ++.++..++ +.+.+++++.
T Consensus       242 ~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g~  315 (375)
T PLN02178        242 TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGG------SQIGGMKETQEMLEFCAKHK  315 (375)
T ss_pred             CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEE------eCccCHHHHHHHHHHHHhCC
Confidence            689999999998889999999999999999998766667888888899999996      443334444 6678888886


Q ss_pred             Ccceeeeeceee
Q 034260           83 PKLIQATLFDLF   94 (100)
Q Consensus        83 ~~~i~~~~~~~~   94 (100)
                      .+... +.+||+
T Consensus       316 i~~~i-~~~~l~  326 (375)
T PLN02178        316 IVSDI-ELIKMS  326 (375)
T ss_pred             CcccE-EEEeHH
Confidence            55444 347765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.09  E-value=7.1e-10  Score=81.18  Aligned_cols=90  Identities=17%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      +++|++|||+|.+.+++.++++++++|+++.+|....  ..+++...++.|++++.|++.  +++....+..+.+.++++
T Consensus       258 ~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~l~~~  335 (371)
T cd08281         258 GGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYM--GSCVPRRDIPRYLALYLS  335 (371)
T ss_pred             CCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEec--CCCChHHHHHHHHHHHHc
Confidence            3799999999998899999999999999999998753  356777888999999997653  222112233366778887


Q ss_pred             CCC--cceeeeeceee
Q 034260           81 QTP--KLIQATLFDLF   94 (100)
Q Consensus        81 ~~~--~~i~~~~~~~~   94 (100)
                      +..  +.+.+..++|+
T Consensus       336 g~i~~~~~i~~~~~l~  351 (371)
T cd08281         336 GRLPVDKLLTHRLPLD  351 (371)
T ss_pred             CCCCchhheeeeecHH
Confidence            753  33445667765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.09  E-value=3.4e-10  Score=82.71  Aligned_cols=88  Identities=17%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC--cccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD--MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~--~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      +|+|++|||+|...++++++++++++|+.+++|++...  +++++..++.. ++++||++  |+.....+.++-+.+--+
T Consensus       253 gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~--G~~~p~~diP~lv~~y~~  329 (366)
T COG1062         253 GGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAF--GGARPRSDIPRLVDLYMA  329 (366)
T ss_pred             CCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEee--cCCccccchhHHHHHHHc
Confidence            48999999999999999999999999999999999864  44566666555 99999997  877664333344444333


Q ss_pred             C---CCcceeeeeceee
Q 034260           81 Q---TPKLIQATLFDLF   94 (100)
Q Consensus        81 ~---~~~~i~~~~~~~~   94 (100)
                      +   ..++|+ ++++|+
T Consensus       330 Gkl~~d~lvt-~~~~Le  345 (366)
T COG1062         330 GKLPLDRLVT-HTIPLE  345 (366)
T ss_pred             CCCchhHHhh-ccccHH
Confidence            3   266666 445543

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.06  E-value=7.9e-10  Score=80.35  Aligned_cols=86  Identities=12%  Similarity=0.024  Sum_probs=62.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccC----hHHHHhcCcEEEeEeeceeeeeechhhH-HHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVP----LTPAAARYLIYGFLFFFFLVLGYSVIYF-RKM   75 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~----~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i   75 (100)
                      .++|++|||+|.+.++++++++++++|+++++|...+  +.+++    ...++.|++++.|      ++..+++++ +++
T Consensus       237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g------~~~~~~~~~~~~~  310 (355)
T cd08230         237 GEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVG------SVNANKRHFEQAV  310 (355)
T ss_pred             CCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEE------ecCCchhhHHHHH
Confidence            4689999999998899999999999999999998765  34555    3567889999995      444434444 556


Q ss_pred             HHHhcCC------Ccceeeeeceee
Q 034260           76 LYISGQT------PKLIQATLFDLF   94 (100)
Q Consensus        76 ~~l~~~~------~~~i~~~~~~~~   94 (100)
                      .++.++.      .+.+.++.|+|+
T Consensus       311 ~~l~~~~~~~~~~~~~~i~~~~~l~  335 (355)
T cd08230         311 EDLAQWKYRWPGVLERLITRRVPLE  335 (355)
T ss_pred             HHHHhcccccccchHHheeeeecHH
Confidence            6766543      233344666654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.06  E-value=1.4e-09  Score=79.47  Aligned_cols=85  Identities=8%  Similarity=0.029  Sum_probs=66.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|.+.++++++++++++|+++.+|....+.+++...++.+++++.|      ++..+..++ +.+.+++++.
T Consensus       244 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~~~~g~  317 (357)
T PLN02514        244 SLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITG------SFIGSMKETEEMLEFCKEKG  317 (357)
T ss_pred             CCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEE------EecCCHHHHHHHHHHHHhCC
Confidence            689999999988899999999999999999998766667888888899999996      444444444 6677788776


Q ss_pred             Ccceeeeeceeee
Q 034260           83 PKLIQATLFDLFF   95 (100)
Q Consensus        83 ~~~i~~~~~~~~~   95 (100)
                      .+.+.+ .|+|+.
T Consensus       318 l~~~i~-~~~l~~  329 (357)
T PLN02514        318 LTSMIE-VVKMDY  329 (357)
T ss_pred             CcCcEE-EEcHHH
Confidence            555554 577753

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.04  E-value=1.9e-09  Score=78.29  Aligned_cols=85  Identities=14%  Similarity=0.073  Sum_probs=64.5

Q ss_pred             Cccc----EEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            3 AGID----VSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         3 ~G~D----~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      +|+|    +++||+|.+.++++++++++++|+++++|....+.++++..++.+++++.|      ++.++.+++ +.+.+
T Consensus       236 ~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~  309 (349)
T TIGR03201       236 RGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALG------NWGCPPDRYPAALDL  309 (349)
T ss_pred             CCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEE------EecCCHHHHHHHHHH
Confidence            4565    899999998899999999999999999998876667777788888999985      444444445 56778


Q ss_pred             HhcCCC--cceeeeeceee
Q 034260           78 ISGQTP--KLIQATLFDLF   94 (100)
Q Consensus        78 l~~~~~--~~i~~~~~~~~   94 (100)
                      ++++..  +.+.+ .++|+
T Consensus       310 i~~g~i~~~~~i~-~~~l~  327 (349)
T TIGR03201       310 VLDGKIQLGPFVE-RRPLD  327 (349)
T ss_pred             HHcCCCCcccceE-EecHH
Confidence            887743  32334 46775

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.04  E-value=1.5e-09  Score=79.52  Aligned_cols=82  Identities=18%  Similarity=0.120  Sum_probs=64.4

Q ss_pred             ccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CC-cccChHHHHhcCcEEEeEeeceeeeeechhhHHH-HHHHhcC
Q 034260            5 IDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRK-MLYISGQ   81 (100)
Q Consensus         5 ~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~-i~~l~~~   81 (100)
                      +|+++||++ +.++++++++++++|+++++|.+. .+ .+++...++.++++|.|      |...++.+.++ +++.+++
T Consensus       230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~G------S~~g~~~d~~e~l~f~~~g  302 (339)
T COG1064         230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVG------SLVGTRADLEEALDFAAEG  302 (339)
T ss_pred             CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEE------EecCCHHHHHHHHHHHHhC
Confidence            899999999 899999999999999999999995 44 55888899999999995      55555677755 5666677


Q ss_pred             CCcceeeeecee
Q 034260           82 TPKLIQATLFDL   93 (100)
Q Consensus        82 ~~~~i~~~~~~~   93 (100)
                      .-|......+++
T Consensus       303 ~Ikp~i~e~~~l  314 (339)
T COG1064         303 KIKPEILETIPL  314 (339)
T ss_pred             CceeeEEeeECH
Confidence            655544334443

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.03  E-value=2e-09  Score=78.80  Aligned_cols=84  Identities=11%  Similarity=0.103  Sum_probs=65.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|....+.++++..++.+++++.|      ++.++..++ +.+.+++++.
T Consensus       247 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~li~~g~  320 (360)
T PLN02586        247 TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGG------SDIGGIKETQEMLDFCAKHN  320 (360)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEE------cCcCCHHHHHHHHHHHHhCC
Confidence            589999999988899999999999999999998766667888888889999885      433334444 6677888876


Q ss_pred             Ccceeeeeceee
Q 034260           83 PKLIQATLFDLF   94 (100)
Q Consensus        83 ~~~i~~~~~~~~   94 (100)
                      .+... +.++|+
T Consensus       321 i~~~~-~~~~l~  331 (360)
T PLN02586        321 ITADI-ELIRMD  331 (360)
T ss_pred             CCCcE-EEEeHH
Confidence            44433 357765

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=98.99  E-value=3.8e-09  Score=76.43  Aligned_cols=89  Identities=15%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             Cccc-EEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccC---hHHHHhcCcEEEeEeeceeeee-echhhH-HHHH
Q 034260            3 AGID-VSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVP---LTPAAARYLIYGFLFFFFLVLG-YSVIYF-RKML   76 (100)
Q Consensus         3 ~G~D-~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~---~~~l~~k~~~i~Gs~~~~g~~~-~~~~~~-~~i~   76 (100)
                      +++| ++|||+|.+.++++++++++++|+++++|....+.+++   +..++.|++++.|+++  +... ++++++ +.+.
T Consensus       227 ~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~~~  304 (347)
T PRK10309        227 LRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWM--NYSSPWPGQEWETASR  304 (347)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEec--cccCCcchhHHHHHHH
Confidence            4677 99999999889999999999999999999876544443   3467889999997653  2111 123444 5567


Q ss_pred             HHhcCCC---cceeeeeceee
Q 034260           77 YISGQTP---KLIQATLFDLF   94 (100)
Q Consensus        77 ~l~~~~~---~~i~~~~~~~~   94 (100)
                      ++.++..   ++|+ +.++|+
T Consensus       305 ~~~~g~i~~~~~i~-~~~~l~  324 (347)
T PRK10309        305 LLTERKLSLEPLIA-HRGSFE  324 (347)
T ss_pred             HHHcCCCCchhheE-EEeeHH
Confidence            7777642   4454 666765

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=98.98  E-value=2.1e-09  Score=79.82  Aligned_cols=87  Identities=17%  Similarity=0.237  Sum_probs=61.8

Q ss_pred             CcccEEEEccChH--------------HHHHHHHHhccCCCEEEEecCCC-C-Cc-----------ccChHHHHhcCcEE
Q 034260            3 AGIDVSFDCAGLN--------------KTMSTVLDATRAGDKVCLVGMGH-H-DM-----------TVPLTPAAARYLIY   55 (100)
Q Consensus         3 ~G~D~vie~~G~~--------------~~~~~al~~l~~gGrvv~vG~~~-~-~~-----------~i~~~~l~~k~~~i   55 (100)
                      +++|++|||+|.+              .++++++++++++|+++++|++. . +.           ++....++.+++++
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i  332 (393)
T TIGR02819       253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSF  332 (393)
T ss_pred             CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceE
Confidence            5799999999986              48999999999999999999973 2 21           23344556777787


Q ss_pred             EeEeeceeeeeechhhH-HHHHHHhcCCC---cceeeeeceeee
Q 034260           56 GFLFFFFLVLGYSVIYF-RKMLYISGQTP---KLIQATLFDLFF   95 (100)
Q Consensus        56 ~Gs~~~~g~~~~~~~~~-~~i~~l~~~~~---~~i~~~~~~~~~   95 (100)
                      .|      +.....+++ +.+.+++++..   ++|+|+.|||+.
T Consensus       333 ~g------~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~  370 (393)
T TIGR02819       333 HT------GQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDD  370 (393)
T ss_pred             Ee------ccCChhhhHHHHHHHHHcCCCCHHHceecceecHHH
Confidence            74      322222343 56778887752   567778888763

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PLN02740 Alcohol dehydrogenase-like

Probab=98.96  E-value=4.1e-09  Score=77.54  Aligned_cols=89  Identities=13%  Similarity=0.032  Sum_probs=61.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCC--cccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHD--MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~--~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      ++|+++||+|.+.++++++++++++ |+++++|....+  ++++...+ .++++|.|+++  +++....+..+.+.++.+
T Consensus       268 g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~--~~~~~~~~~~~~~~~~~~  344 (381)
T PLN02740        268 GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVF--GDFKGKSQLPNLAKQCMQ  344 (381)
T ss_pred             CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEec--CCCCcHHHHHHHHHHHHc
Confidence            7999999999988999999999997 999999987653  33443333 47899997653  333222223355677777


Q ss_pred             CCC--cceeeeeceeee
Q 034260           81 QTP--KLIQATLFDLFF   95 (100)
Q Consensus        81 ~~~--~~i~~~~~~~~~   95 (100)
                      +..  +.+.++.++|+.
T Consensus       345 g~i~~~~~it~~~~l~e  361 (381)
T PLN02740        345 GVVNLDGFITHELPFEK  361 (381)
T ss_pred             CCCChHHheeEEecHHH
Confidence            643  323446777753

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=98.95  E-value=5.6e-09  Score=77.61  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=64.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-C--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-H--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      |+|+|+++||+|.+.++++++++++++|++++++... .  +.++++..++.+++++.|      ++.....++ +.+.+
T Consensus       255 g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l  328 (410)
T cd08238         255 GQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVG------TSGGNTDDMKEAIDL  328 (410)
T ss_pred             CCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEE------eCCCCHHHHHHHHHH
Confidence            3579999999998899999999999999988775432 2  356777888999999995      444444444 66778


Q ss_pred             HhcCC--Ccceeeeeceee
Q 034260           78 ISGQT--PKLIQATLFDLF   94 (100)
Q Consensus        78 l~~~~--~~~i~~~~~~~~   94 (100)
                      ++++.  ++.+.++.++|+
T Consensus       329 i~~g~i~~~~~it~~~~l~  347 (410)
T cd08238         329 MAAGKLNPARMVTHIGGLN  347 (410)
T ss_pred             HHcCCCchhhcEEEEecHH
Confidence            88775  332444667764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=98.90  E-value=1.6e-08  Score=72.83  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=62.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccCh-HHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL-TPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|++|||+|.+..+++++++++++|+++++|..... +++. ..++.+++++.|      ++.++.+++ +.++++.+
T Consensus       230 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~~~~  302 (339)
T cd08239         230 AGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL-TIEVSNDLIRKQRTLIG------SWYFSVPDMEECAEFLAR  302 (339)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc-ccCcHHHHHhCCCEEEE------EecCCHHHHHHHHHHHHc
Confidence            47999999999988889999999999999999986542 3443 457789999995      444444445 56677877


Q ss_pred             CCC--cceeeeeceee
Q 034260           81 QTP--KLIQATLFDLF   94 (100)
Q Consensus        81 ~~~--~~i~~~~~~~~   94 (100)
                      +..  +.+.+..++|+
T Consensus       303 g~i~~~~~i~~~~~l~  318 (339)
T cd08239         303 HKLEVDRLVTHRFGLD  318 (339)
T ss_pred             CCCChhHeEEEEecHH
Confidence            642  23334556664

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=98.90  E-value=1.4e-08  Score=73.48  Aligned_cols=86  Identities=21%  Similarity=0.280  Sum_probs=65.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|.+.++++++++++++|+++.+|....+.++++..+..++++|.|      .+.+..+++ +.+.++.++
T Consensus       240 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~~~~g  313 (351)
T cd08233         240 GGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTG------SICYTREDFEEVIDLLASG  313 (351)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEE------EeccCcchHHHHHHHHHcC
Confidence            4699999999987899999999999999999998776677888888899999995      444433445 556677776


Q ss_pred             CC--cceeeeeceee
Q 034260           82 TP--KLIQATLFDLF   94 (100)
Q Consensus        82 ~~--~~i~~~~~~~~   94 (100)
                      ..  +.+.+..++++
T Consensus       314 ~l~~~~~i~~~~~l~  328 (351)
T cd08233         314 KIDAEPLITSRIPLE  328 (351)
T ss_pred             CCChHHheEEEecHH
Confidence            53  33344556664

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=98.87  E-value=1.9e-08  Score=72.80  Aligned_cols=85  Identities=9%  Similarity=-0.004  Sum_probs=66.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      ++|+++|++|...+++.++++++++|+++++|.... ..++++..++.+++++.|      ++...+.++ +.+.+++++
T Consensus       223 ~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g  296 (329)
T TIGR02822       223 PLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRS------VTSNTRADAREFLELAAQH  296 (329)
T ss_pred             cceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEE------eecCCHHHHHHHHHHHHhC
Confidence            579999999998999999999999999999998643 345777778889999995      444444444 556788888


Q ss_pred             CCcceeeeeceeee
Q 034260           82 TPKLIQATLFDLFF   95 (100)
Q Consensus        82 ~~~~i~~~~~~~~~   95 (100)
                      ..++++ +.|+|+.
T Consensus       297 ~i~~i~-~~~~l~~  309 (329)
T TIGR02822       297 GVRVTT-HTYPLSE  309 (329)
T ss_pred             CCeeEE-EEEeHHH
Confidence            877775 5678753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.77  E-value=3.2e-08  Score=72.05  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=64.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCC--cccChHHHHhcCcEEEeEeeceeeeeechhhHHH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHD--MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRK-MLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~--~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~-i~~   77 (100)
                      +.|+|+.+||+|+..++++|+++++.| |+-|++|+....  ++++++.+ .++++++|+.+  |.+.. +++.+. +..
T Consensus       260 dgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l-~~GR~~~Gs~F--GG~K~-~~~iP~lV~~  335 (375)
T KOG0022|consen  260 DGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQL-VTGRTWKGSAF--GGFKS-KSDIPKLVKD  335 (375)
T ss_pred             cCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhh-ccccEEEEEec--ccccc-hhhhhHHHHH
Confidence            468999999999999999999999999 999999998764  45566655 45889999876  77665 444444 443


Q ss_pred             -HhcC--CCcceeeeeceee
Q 034260           78 -ISGQ--TPKLIQATLFDLF   94 (100)
Q Consensus        78 -l~~~--~~~~i~~~~~~~~   94 (100)
                       +...  ..++|. +.+||+
T Consensus       336 y~~~~l~ld~~IT-h~l~f~  354 (375)
T KOG0022|consen  336 YMKKKLNLDEFIT-HELPFE  354 (375)
T ss_pred             HHhCccchhhhhh-cccCHH
Confidence             4443  366666 444543

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=98.77  E-value=5e-08  Score=71.27  Aligned_cols=88  Identities=14%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +++|+++||+|.+.++.+++++++++ |+++++|....  ++++++..+ .++++++|++.  +++. .+.++ +.++++
T Consensus       256 ~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~--~~~~-~~~~~~~~~~~~  331 (369)
T cd08301         256 GGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLF--GGYK-PKTDLPNLVEKY  331 (369)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCeEEEEec--CCCC-hHHHHHHHHHHH
Confidence            37999999999988999999999996 99999998764  344554444 47899997553  2222 22334 556677


Q ss_pred             hcCCCc--ceeeeeceee
Q 034260           79 SGQTPK--LIQATLFDLF   94 (100)
Q Consensus        79 ~~~~~~--~i~~~~~~~~   94 (100)
                      .++..+  .+.++.++|+
T Consensus       332 ~~g~~~~~~~i~~~~~l~  349 (369)
T cd08301         332 MKKELELEKFITHELPFS  349 (369)
T ss_pred             HcCCCCcHHheeeeecHH
Confidence            776433  2334566764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=98.72  E-value=1e-07  Score=69.62  Aligned_cols=88  Identities=18%  Similarity=0.236  Sum_probs=60.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      +++|+++||+|.+.++++++++++++ |+++++|...+ ..++++..++. +++++|++.  +.+....+..+.+.++++
T Consensus       253 ~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~--~~~~~~~~~~~~~~~~~~  329 (365)
T cd08277         253 GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFF--GGFKSRSDVPKLVSKYMN  329 (365)
T ss_pred             CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeec--CCCChHHHHHHHHHHHHC
Confidence            47999999999888999999999985 99999998753 45666666654 899997553  322211223355667776


Q ss_pred             CC--C-cceeeeeceee
Q 034260           81 QT--P-KLIQATLFDLF   94 (100)
Q Consensus        81 ~~--~-~~i~~~~~~~~   94 (100)
                      +.  . ++++ +.++++
T Consensus       330 ~~~~~~~~i~-~~~~l~  345 (365)
T cd08277         330 KKFDLDELIT-HVLPFE  345 (365)
T ss_pred             CCcChhHhee-eEEchh
Confidence            53  3 3444 556765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=98.70  E-value=1.2e-07  Score=69.53  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      |+|+++||+|.+.++++++++++++ |+++++|....  +.+++...++. +..+.|+.+  ++.....++.+.+.++++
T Consensus       255 g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~--~~~~~~~~~~~~~~~~~~  331 (368)
T TIGR02818       255 GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAF--GGVKGRTELPGIVEQYMK  331 (368)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeec--cCCCcHHHHHHHHHHHHC
Confidence            7999999999988999999999996 99999998643  34455554443 456776432  221111233466778877


Q ss_pred             CC--Ccceeeeeceeee
Q 034260           81 QT--PKLIQATLFDLFF   95 (100)
Q Consensus        81 ~~--~~~i~~~~~~~~~   95 (100)
                      +.  ++.+.++.++|+.
T Consensus       332 g~i~~~~~it~~~~l~~  348 (368)
T TIGR02818       332 GEIALDDFVTHTMPLED  348 (368)
T ss_pred             CCCCchhheeEEecHHH
Confidence            64  3344456777753

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=98.70  E-value=1.6e-07  Score=68.78  Aligned_cols=88  Identities=16%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +|+|+++||+|.+.++++++++++++ |+++.+|....  +++++...+. +..++.|+.+  +.+.. ++++ +.+.++
T Consensus       255 ~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~--~~~~~-~~~~~~~~~~~  330 (368)
T cd08300         255 GGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAF--GGWKS-RSQVPKLVEDY  330 (368)
T ss_pred             CCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEe--cccCc-HHHHHHHHHHH
Confidence            37999999999888999999999997 99999998742  3444444443 3457776442  33322 3344 556777


Q ss_pred             hcCCCc--ceeeeeceee
Q 034260           79 SGQTPK--LIQATLFDLF   94 (100)
Q Consensus        79 ~~~~~~--~i~~~~~~~~   94 (100)
                      .++..+  .+.++.++|+
T Consensus       331 ~~g~l~~~~~i~~~~~le  348 (368)
T cd08300         331 MKGKIKVDEFITHTMPLD  348 (368)
T ss_pred             HcCCCChhhceeeeEcHH
Confidence            776433  3445667765

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=98.69  E-value=1.1e-07  Score=69.44  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=63.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-Cc-----ccChHHHHhcCcEEEeEeeceeeeee-chhhH-H
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DM-----TVPLTPAAARYLIYGFLFFFFLVLGY-SVIYF-R   73 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~-----~i~~~~l~~k~~~i~Gs~~~~g~~~~-~~~~~-~   73 (100)
                      ++|+|+++||+|. .++++++++++++|+++++|.... +.     .++...++.|++++.|++.  +.+.. ..+++ +
T Consensus       226 ~~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~--~~~~~~~~~~~~~  302 (348)
T PLN03154        226 PEGIDIYFDNVGG-DMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQ--SDYLHLFPQFLEN  302 (348)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEH--HHHHHHHHHHHHH
Confidence            3479999999997 589999999999999999997653 22     1356678889999996442  11100 12333 4


Q ss_pred             HHHHHhcCCCcceeeeeceee
Q 034260           74 KMLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        74 ~i~~l~~~~~~~i~~~~~~~~   94 (100)
                      .+.+++++..+.+.+..++|+
T Consensus       303 ~~~l~~~G~l~~~~~~~~~L~  323 (348)
T PLN03154        303 VSRYYKQGKIVYIEDMSEGLE  323 (348)
T ss_pred             HHHHHHCCCccCceecccCHH
Confidence            456788887776666667764

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=98.64  E-value=3.1e-07  Score=65.63  Aligned_cols=72  Identities=15%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhHH-HHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFR-KMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~-~i~~l~~   80 (100)
                      +++|+++||+|....++++++.++++|+++.+|... .+..+++..++.|++++.|      ++.+++++.+ .+++++.
T Consensus       232 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~~~~  305 (306)
T cd08258         232 DGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIG------SRSSTPASWETALRLLAS  305 (306)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEE------EecCchHhHHHHHHHHhc
Confidence            579999999987788999999999999999999876 3466788888899999996      4445456664 4555554

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PRK10083 putative oxidoreductase; Provisional

Probab=98.53  E-value=8.1e-07  Score=63.78  Aligned_cols=84  Identities=10%  Similarity=0.053  Sum_probs=58.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQTP   83 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~~~   83 (100)
                      ++|+++||+|.+.++.+++++++++|+++.+|....+.+++...+..+++++.+      +........+.+.++.++..
T Consensus       228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~l  301 (339)
T PRK10083        228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFS------SRLNANKFPVVIDWLSKGLI  301 (339)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEE------EecChhhHHHHHHHHHcCCC
Confidence            467999999987899999999999999999998765445555566678888875      32222233356677777654


Q ss_pred             cc--eeeeecee
Q 034260           84 KL--IQATLFDL   93 (100)
Q Consensus        84 ~~--i~~~~~~~   93 (100)
                      +.  +.+..+++
T Consensus       302 ~~~~~~~~~~~l  313 (339)
T PRK10083        302 DPEKLITHTFDF  313 (339)
T ss_pred             ChHHheeeeecH
Confidence            43  23355554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.51  E-value=3.3e-07  Score=68.98  Aligned_cols=71  Identities=11%  Similarity=0.143  Sum_probs=58.2

Q ss_pred             cccEEEEccChHHHHHHH-HHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechh--hH--HHHHHH
Q 034260            4 GIDVSFDCAGLNKTMSTV-LDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVI--YF--RKMLYI   78 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~a-l~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~--~~--~~i~~l   78 (100)
                      ++|+++||+|.+.+++++ ++++++||+++.+|..  +.++++..+..+++++.|      ++.+..+  +.  +++.++
T Consensus       257 ~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g------~~~~~~~~~~~~g~aI~LL  328 (413)
T cd00401         257 EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVN------IKPQVDRYELPDGRRIILL  328 (413)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEE------ccCCcceEEcCCcchhhhh
Confidence            589999999999999887 9999999999999965  567899999999999995      5554332  22  578888


Q ss_pred             hcCC
Q 034260           79 SGQT   82 (100)
Q Consensus        79 ~~~~   82 (100)
                      +++.
T Consensus       329 a~Gr  332 (413)
T cd00401         329 AEGR  332 (413)
T ss_pred             hCcC
Confidence            8874

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=98.49  E-value=1.4e-06  Score=63.54  Aligned_cols=90  Identities=18%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeee--eechhhHH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVL--GYSVIYFR-KML   76 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~--~~~~~~~~-~i~   76 (100)
                      |+|+|+|+|++|. .++..+++.++++|+++.+|...+  +.+++...+..+.+++.|+..  +..  ....+.+. ...
T Consensus       209 g~gvDvv~D~vG~-~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~  285 (326)
T COG0604         209 GKGVDVVLDTVGG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTL--GSRDPEALAEALAELFD  285 (326)
T ss_pred             CCCceEEEECCCH-HHHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecc--eecchHHHHHHHHHHHH
Confidence            4589999999997 588899999999999999998873  456777777888899887542  211  01123333 345


Q ss_pred             HHhcCCCcceeeeeceee
Q 034260           77 YISGQTPKLIQATLFDLF   94 (100)
Q Consensus        77 ~l~~~~~~~i~~~~~~~~   94 (100)
                      ++.++..+.+.+..+||.
T Consensus       286 ~~~~g~l~~~i~~~~~l~  303 (326)
T COG0604         286 LLASGKLKPVIDRVYPLA  303 (326)
T ss_pred             HHHcCCCcceeccEechh
Confidence            778888777777777764

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=98.49  E-value=9.6e-07  Score=63.25  Aligned_cols=89  Identities=12%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-Cc-ccChHHHHhcCcEEEeEeeceeeee--echhhHHHH-H
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DM-TVPLTPAAARYLIYGFLFFFFLVLG--YSVIYFRKM-L   76 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~-~i~~~~l~~k~~~i~Gs~~~~g~~~--~~~~~~~~i-~   76 (100)
                      |+++|+++||+|.. ...+++++++++|+++.+|.... +. .++...++.+++++.|++.  ..+.  ...++.+.+ .
T Consensus       210 ~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  286 (324)
T cd08291         210 KLNATIFFDAVGGG-LTGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWL--TTWLQKLGPEVVKKLKK  286 (324)
T ss_pred             CCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEH--HHhhcccCHHHHHHHHH
Confidence            35799999999985 56788999999999999997543 23 3667778889999997553  1111  112334333 4


Q ss_pred             HHhcCCCcceeeeeceee
Q 034260           77 YISGQTPKLIQATLFDLF   94 (100)
Q Consensus        77 ~l~~~~~~~i~~~~~~~~   94 (100)
                      ++. +..+.+.+++++|+
T Consensus       287 ~~~-~~~~~~i~~~~~l~  303 (324)
T cd08291         287 LVK-TELKTTFASRYPLA  303 (324)
T ss_pred             HHh-CccccceeeEEcHH
Confidence            445 54444444667764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.46  E-value=1.9e-06  Score=62.01  Aligned_cols=84  Identities=11%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|....++.++++++++|+++.+|......+++...++.+++++.|      .......+. +.+.++..+.
T Consensus       228 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~  301 (333)
T cd08296         228 GAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHG------WPSGTALDSEDTLKFSALHG  301 (333)
T ss_pred             CCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEE------eCcCCHHHHHHHHHHHHhCC
Confidence            689999999877899999999999999999998776667777778899999995      333333444 4455665555


Q ss_pred             Ccceeeeeceee
Q 034260           83 PKLIQATLFDLF   94 (100)
Q Consensus        83 ~~~i~~~~~~~~   94 (100)
                      .+.+. +.++++
T Consensus       302 l~~~v-~~~~~~  312 (333)
T cd08296         302 VRPMV-ETFPLE  312 (333)
T ss_pred             CCceE-EEEEHH
Confidence            44443 346654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=98.46  E-value=1.3e-06  Score=63.45  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=55.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++++|+++||+|....++.++++++++|+++.+|....  ..+++...++.+++++.|      .+.+.+++. +.+.++
T Consensus       247 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  320 (361)
T cd08231         247 GRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIG------VHNYDPSHLYRAVRFL  320 (361)
T ss_pred             CCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEE------cccCCchhHHHHHHHH
Confidence            35799999999987789999999999999999997653  344565567889999985      433334444 555666


Q ss_pred             hcC
Q 034260           79 SGQ   81 (100)
Q Consensus        79 ~~~   81 (100)
                      .+.
T Consensus       321 ~~~  323 (361)
T cd08231         321 ERT  323 (361)
T ss_pred             Hhc
Confidence            554

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02702 L-idonate 5-dehydrogenase

Probab=98.43  E-value=2.8e-06  Score=61.89  Aligned_cols=75  Identities=59%  Similarity=0.880  Sum_probs=56.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      ++++|+++||+|...++++++++++++|+++.+|.......+++..+..+++++.+      .+.+.....+.+.++..+
T Consensus       252 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~~  325 (364)
T PLN02702        252 GGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVG------VFRYRNTWPLCLEFLRSG  325 (364)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEE------eccChHHHHHHHHHHHcC
Confidence            34799999999987899999999999999999997544445566778889999985      333322333556666665


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      .
T Consensus       326 ~  326 (364)
T PLN02702        326 K  326 (364)
T ss_pred             C
Confidence            4

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=98.40  E-value=2.2e-06  Score=62.72  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhcc-CCCEEEEecCCC--CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATR-AGDKVCLVGMGH--HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~-~gGrvv~vG~~~--~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      ++++|+++||+|...+++.++++++ ++|+++.+|...  ....++...+ .++.+++|++.  +++.. .+.+ +.+.+
T Consensus       251 ~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~--~~~~~-~~~~~~~~~l  326 (365)
T cd05279         251 DGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVF--GGWKS-KDSVPKLVAL  326 (365)
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEec--cCCch-HhHHHHHHHH
Confidence            4579999999998789999999999 999999999764  3566777677 78889986542  22222 3334 55566


Q ss_pred             HhcCC
Q 034260           78 ISGQT   82 (100)
Q Consensus        78 l~~~~   82 (100)
                      +..+.
T Consensus       327 ~~~~~  331 (365)
T cd05279         327 YRQKK  331 (365)
T ss_pred             HHcCC
Confidence            76664

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=98.39  E-value=2e-06  Score=62.27  Aligned_cols=87  Identities=16%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC--cccCh--HHHHhcCcEEEeEeeceeeeee-chhhH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD--MTVPL--TPAAARYLIYGFLFFFFLVLGY-SVIYF-RKM   75 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~--~~i~~--~~l~~k~~~i~Gs~~~~g~~~~-~~~~~-~~i   75 (100)
                      |+++|+++||+|.+..+.+++++++++|+++.+|.....  ..++.  .....+.+++.+      .... .++++ +.+
T Consensus       233 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~  306 (351)
T cd08285         233 GKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTING------GLCPGGRLRMERLA  306 (351)
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEE------eecCCccccHHHHH
Confidence            357999999999888899999999999999999987643  23332  223456777774      3222 23445 567


Q ss_pred             HHHhcCCCcc---eeeeeceee
Q 034260           76 LYISGQTPKL---IQATLFDLF   94 (100)
Q Consensus        76 ~~l~~~~~~~---i~~~~~~~~   94 (100)
                      .+++++..+.   +.+..++++
T Consensus       307 ~~~~~g~i~~~~~~~~~~~~l~  328 (351)
T cd08285         307 SLIEYGRVDPSKLLTHHFFGFD  328 (351)
T ss_pred             HHHHcCCCChhhceeccccCHH
Confidence            7888876444   665556654

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=98.38  E-value=3.4e-06  Score=60.91  Aligned_cols=84  Identities=25%  Similarity=0.188  Sum_probs=60.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|.+.+++.++++++++|+++.+|.......++...+..+++++.+      ......++. +.+.++.++.
T Consensus       243 ~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~ll~~~~  316 (350)
T cd08240         243 GVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQG------SYVGSLEELRELVALAKAGK  316 (350)
T ss_pred             CCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEE------cccCCHHHHHHHHHHHHcCC
Confidence            799999999987899999999999999999998765444555556678999984      443334444 5566777775


Q ss_pred             Ccceeeeecee
Q 034260           83 PKLIQATLFDL   93 (100)
Q Consensus        83 ~~~i~~~~~~~   93 (100)
                      .+.+....+++
T Consensus       317 i~~~~~~~~~~  327 (350)
T cd08240         317 LKPIPLTERPL  327 (350)
T ss_pred             CccceeeEEcH
Confidence            44444344544

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=98.37  E-value=3e-06  Score=62.41  Aligned_cols=84  Identities=13%  Similarity=-0.060  Sum_probs=60.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      ++|+++||+|. ..+++++++++++|+++.+|.... ..+++...+..++.++.|      ++.+..++. +.+.++.++
T Consensus       285 g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g------~~~~~~~~~~~~~~~~~~~  357 (393)
T cd08246         285 DPDIVFEHPGR-ATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQG------SHFANDREAAEANRLVMKG  357 (393)
T ss_pred             CCeEEEECCch-HhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEe------cccCcHHHHHHHHHHHHcC
Confidence            79999999997 679999999999999999997543 345677777788999985      434434444 555667666


Q ss_pred             CCcceeeeeceee
Q 034260           82 TPKLIQATLFDLF   94 (100)
Q Consensus        82 ~~~~i~~~~~~~~   94 (100)
                      ..+.+.+..+++.
T Consensus       358 ~l~~~~~~~~~l~  370 (393)
T cd08246         358 RIDPCLSKVFSLD  370 (393)
T ss_pred             CceeeeeEEEeHH
Confidence            5433344455543

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=98.33  E-value=7.1e-06  Score=59.08  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|....++.+++.++++|+++.+|......++++..++.+++++.+      .... .+.. +.++++.++
T Consensus       234 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~  306 (345)
T cd08286         234 RGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITT------GLVD-TNTTPMLLKLVSSG  306 (345)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEe------ecCc-hhhHHHHHHHHHcC
Confidence            4799999999988889999999999999999997665566777777789999984      2211 1233 445666666


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      .
T Consensus       307 ~  307 (345)
T cd08286         307 K  307 (345)
T ss_pred             C
Confidence            4

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=98.33  E-value=4.8e-06  Score=60.24  Aligned_cols=85  Identities=15%  Similarity=0.037  Sum_probs=58.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHH-HhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPA-AARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l-~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      +++|+++||+|...++.+++++++++|+++.+|......+++...+ ..+++++.|+.      .......+.+.++.++
T Consensus       242 ~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~g  315 (350)
T cd08256         242 YGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSH------LGPYCYPIAIDLIASG  315 (350)
T ss_pred             CCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEec------cCchhHHHHHHHHHcC
Confidence            4799999999977789999999999999999997665555555444 35788888532      2222333556677776


Q ss_pred             CCcc--eeeeecee
Q 034260           82 TPKL--IQATLFDL   93 (100)
Q Consensus        82 ~~~~--i~~~~~~~   93 (100)
                      ..+.  +....+++
T Consensus       316 ~l~~~~~~~~~~~l  329 (350)
T cd08256         316 RLPTDGIVTHQFPL  329 (350)
T ss_pred             CCChhHheEEEeEH
Confidence            5443  24455554

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.32  E-value=1.6e-06  Score=66.86  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=55.9

Q ss_pred             CcccEEEEccChH-----HHH-HHHHHhccCCCEEEEecCC-CCC--cccChHHHHh-cCcEEEeEeeceeeeeechhhH
Q 034260            3 AGIDVSFDCAGLN-----KTM-STVLDATRAGDKVCLVGMG-HHD--MTVPLTPAAA-RYLIYGFLFFFFLVLGYSVIYF   72 (100)
Q Consensus         3 ~G~D~vie~~G~~-----~~~-~~al~~l~~gGrvv~vG~~-~~~--~~i~~~~l~~-k~~~i~Gs~~~~g~~~~~~~~~   72 (100)
                      +++|++|||+|.+     ..+ +++++.+++||+++.+|.. ++.  .+++...++. +++++.|      ..+++.+++
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~G------v~n~P~~~p  320 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIG------YTDLPSRLP  320 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEE------eCCCchhHH
Confidence            4799999999974     364 9999999999999999985 343  4555566665 8999994      666655555


Q ss_pred             -HHHHHHhcCC
Q 034260           73 -RKMLYISGQT   82 (100)
Q Consensus        73 -~~i~~l~~~~   82 (100)
                       ++..+++++.
T Consensus       321 ~~As~lla~~~  331 (509)
T PRK09424        321 TQSSQLYGTNL  331 (509)
T ss_pred             HHHHHHHHhCC
Confidence             4677777663

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=98.32  E-value=6.9e-06  Score=58.52  Aligned_cols=77  Identities=27%  Similarity=0.375  Sum_probs=58.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      ++++|+++||+|....+++++++++++|+++.+|.......++...+..++.++.|      ++....+.. ..+.++.+
T Consensus       230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ll~~  303 (338)
T cd08254         230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIG------SFGGTPEDLPEVLDLIAK  303 (338)
T ss_pred             CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEE------eccCCHHHHHHHHHHHHc
Confidence            35799999999988899999999999999999998765556677778888999985      333334444 44566666


Q ss_pred             CCCc
Q 034260           81 QTPK   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +..+
T Consensus       304 ~~l~  307 (338)
T cd08254         304 GKLD  307 (338)
T ss_pred             CCCc
Confidence            6433

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.32  E-value=5.3e-06  Score=59.08  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      ++++|+++||+|...+++.++++++++|+++..|.......++...+..++.++.|      ++..  ...+.+.++.++
T Consensus       212 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~------~~~~--~~~~~~~~~~~~  283 (319)
T cd08242         212 GGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVG------SRCG--PFAPALRLLRKG  283 (319)
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEE------Eecc--cHHHHHHHHHcC
Confidence            35799999999987889999999999999999887665666777777888999985      3322  233556667666


Q ss_pred             CC--cceeeeeceee
Q 034260           82 TP--KLIQATLFDLF   94 (100)
Q Consensus        82 ~~--~~i~~~~~~~~   94 (100)
                      ..  ..+....++++
T Consensus       284 ~l~~~~~~~~~~~l~  298 (319)
T cd08242         284 LVDVDPLITAVYPLE  298 (319)
T ss_pred             CCChhhceEEEEeHH
Confidence            43  23344566654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.31  E-value=5.6e-06  Score=59.67  Aligned_cols=85  Identities=14%  Similarity=0.119  Sum_probs=61.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      ++++|+++||+|...++++++++++++|+++.+|......++++..++.+++++.|+      .....+++ +.+.++.+
T Consensus       230 ~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~~~~~  303 (337)
T cd05283         230 AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGS------LIGGRKETQEMLDFAAE  303 (337)
T ss_pred             cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEe------cccCHHHHHHHHHHHHh
Confidence            457999999999876799999999999999999987655567777778899999963      33334445 44556666


Q ss_pred             CCCcceeeeecee
Q 034260           81 QTPKLIQATLFDL   93 (100)
Q Consensus        81 ~~~~~i~~~~~~~   93 (100)
                      +..+.+. +.+++
T Consensus       304 ~~l~~~~-~~~~~  315 (337)
T cd05283         304 HGIKPWV-EVIPM  315 (337)
T ss_pred             CCCccce-EEEEH
Confidence            6443333 34443

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=98.28  E-value=8.4e-06  Score=58.65  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|.+..++.+++.++++|+++.+|....+.++++...+.+++++.+      +.....+.. +.+.++.++
T Consensus       236 ~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  309 (345)
T cd08287         236 VGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAG------GPAPVRRYLPELLDDVLAG  309 (345)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEE------ecCCcHHHHHHHHHHHHcC
Confidence            4799999999988899999999999999999998765556676566789999985      333323444 556677776


Q ss_pred             CCc
Q 034260           82 TPK   84 (100)
Q Consensus        82 ~~~   84 (100)
                      ..+
T Consensus       310 ~l~  312 (345)
T cd08287         310 RIN  312 (345)
T ss_pred             CCC
Confidence            544

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.26  E-value=8.7e-06  Score=58.51  Aligned_cols=84  Identities=20%  Similarity=0.154  Sum_probs=59.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++++|+++||+|. ..++.++++++++|+++.+|..... .++++..++.+++++.|+      .....+.+ +.+.++.
T Consensus       241 ~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~  313 (350)
T cd08274         241 GEPVDVVADVVGG-PLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGS------TLGTREVFRRLVRYIE  313 (350)
T ss_pred             CCCCcEEEecCCH-HHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEe------ecCCHHHHHHHHHHHH
Confidence            3579999999997 5799999999999999999976443 567777778899999853      33334444 5566776


Q ss_pred             cCCCcceeeeece
Q 034260           80 GQTPKLIQATLFD   92 (100)
Q Consensus        80 ~~~~~~i~~~~~~   92 (100)
                      ++..+.+....++
T Consensus       314 ~~~l~~~~~~~~~  326 (350)
T cd08274         314 EGEIRPVVAKTFP  326 (350)
T ss_pred             CCCcccccccccC
Confidence            6643322334444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=98.25  E-value=9.2e-06  Score=58.51  Aligned_cols=56  Identities=20%  Similarity=0.366  Sum_probs=47.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~G   57 (100)
                      ++++|+++||+|...++++++++++++|+++.+|......+++...+..+++++.+
T Consensus       230 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~  285 (341)
T PRK05396        230 TEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKG  285 (341)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEE
Confidence            45799999999988899999999999999999998765555666677888899885

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.22  E-value=4.1e-06  Score=61.27  Aligned_cols=73  Identities=12%  Similarity=0.080  Sum_probs=57.2

Q ss_pred             cEEEEccC--hHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            6 DVSFDCAG--LNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         6 D~vie~~G--~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      |..++|+-  +...++.+++++|++|++|++|++..+..++...+..+.++|.||.      -.++.+. +++++.+++.
T Consensus       248 dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~------vG~~ket~E~Ldf~a~~~  321 (360)
T KOG0023|consen  248 DGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSI------VGSRKETQEALDFVARGL  321 (360)
T ss_pred             cCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeec------cccHHHHHHHHHHHHcCC
Confidence            45555555  5668999999999999999999999988999999999999999654      3335555 5566777765


Q ss_pred             Cc
Q 034260           83 PK   84 (100)
Q Consensus        83 ~~   84 (100)
                      -|
T Consensus       322 ik  323 (360)
T KOG0023|consen  322 IK  323 (360)
T ss_pred             Cc
Confidence            33

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=98.20  E-value=1.9e-05  Score=56.94  Aligned_cols=75  Identities=33%  Similarity=0.553  Sum_probs=55.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      |+++|+++||+|....++.++++++++|+++.+|.......+++..+..+.+++.+      .........+.+.++..+
T Consensus       232 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~  305 (343)
T cd05285         232 GKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRG------VFRYANTYPTAIELLASG  305 (343)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEE------eccChHHHHHHHHHHHcC
Confidence            35699999999987789999999999999999997655455666677788888884      333322333555667666


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      .
T Consensus       306 ~  306 (343)
T cd05285         306 K  306 (343)
T ss_pred             C
Confidence            4

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=98.20  E-value=1.1e-05  Score=59.05  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC--CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH--HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~--~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++++|+++||+|.+..+.+++++++++|+++.+|...  ....+++..+..+++++.++..  +. ..+.+.. +.+.++
T Consensus       252 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l  328 (365)
T cd08278         252 GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIE--GD-SVPQEFIPRLIELY  328 (365)
T ss_pred             CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeec--CC-cChHHHHHHHHHHH
Confidence            4579999999998788999999999999999999763  3456777777788999986431  11 1122333 445566


Q ss_pred             hcCCC
Q 034260           79 SGQTP   83 (100)
Q Consensus        79 ~~~~~   83 (100)
                      .++..
T Consensus       329 ~~g~l  333 (365)
T cd08278         329 RQGKF  333 (365)
T ss_pred             HcCCC
Confidence            66643

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=98.20  E-value=1.3e-05  Score=57.45  Aligned_cols=89  Identities=11%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-----Ccc--cChHHHHhcCcEEEeEeeceeeeee--chhhH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-----DMT--VPLTPAAARYLIYGFLFFFFLVLGY--SVIYF   72 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-----~~~--i~~~~l~~k~~~i~Gs~~~~g~~~~--~~~~~   72 (100)
                      ++|+|+++||+|.+ .+++++++++++|+++.+|....     +.+  .....+..+++++.|+..  ..+..  ..+.+
T Consensus       205 ~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~  281 (325)
T TIGR02825       205 PDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIV--NRWQGEVRQKAL  281 (325)
T ss_pred             CCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEe--hhhhhhhhHHHH
Confidence            35799999999975 67999999999999999997532     122  123456778999986331  11111  01223


Q ss_pred             -HHHHHHhcCCCcceeeeecee
Q 034260           73 -RKMLYISGQTPKLIQATLFDL   93 (100)
Q Consensus        73 -~~i~~l~~~~~~~i~~~~~~~   93 (100)
                       +.+.++.++..+......+++
T Consensus       282 ~~~~~l~~~g~l~~~~~~~~~l  303 (325)
T TIGR02825       282 KELLKWVLEGKIQYKEYVIEGF  303 (325)
T ss_pred             HHHHHHHHCCCcccceeccccH
Confidence             445567677544433344454

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=98.17  E-value=1.8e-05  Score=58.26  Aligned_cols=79  Identities=14%  Similarity=0.111  Sum_probs=55.8

Q ss_pred             CCcccEEEEccChH-HHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            2 GAGIDVSFDCAGLN-KTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~-~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      |+++|+++||+|.+ ..+++++++++++||++.+|......++++..+..+..++.|+.   +. .......+.+.++..
T Consensus       273 g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~~~~~~~~ll~~  348 (384)
T cd08265         273 GWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQ---GH-SGHGIFPSVIKLMAS  348 (384)
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEee---cc-CCcchHHHHHHHHHc
Confidence            45799999999973 57899999999999999999765555566666777888888532   11 111123355667776


Q ss_pred             CCCc
Q 034260           81 QTPK   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +..+
T Consensus       349 g~l~  352 (384)
T cd08265         349 GKID  352 (384)
T ss_pred             CCCC
Confidence            6533

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=98.15  E-value=1.9e-05  Score=58.43  Aligned_cols=84  Identities=13%  Similarity=0.036  Sum_probs=58.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechh-hHHHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVI-YFRKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~-~~~~i~~l~~   80 (100)
                      +++|+++||+|. ..+.+++++++++|+++.+|.... +.+++...+..+++++.|      +...... ..+.+.++.+
T Consensus       279 ~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~  351 (398)
T TIGR01751       279 EDPDIVFEHPGR-ATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQG------SHFANLREAWEANRLVAK  351 (398)
T ss_pred             CCceEEEECCcH-HHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEc------cccCcHHHHHHHHHHHHC
Confidence            579999999996 679999999999999999998654 356667777788888885      3322223 3355566666


Q ss_pred             CCCcceeeeecee
Q 034260           81 QTPKLIQATLFDL   93 (100)
Q Consensus        81 ~~~~~i~~~~~~~   93 (100)
                      +..+...+..+++
T Consensus       352 ~~l~~~~~~~~~l  364 (398)
T TIGR01751       352 GRIDPTLSKVYPL  364 (398)
T ss_pred             CCcccceeeEEcH
Confidence            5433323344444

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=98.15  E-value=1.8e-05  Score=57.11  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=44.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-c-----ccChHHHHhcCcEEEeE
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-M-----TVPLTPAAARYLIYGFL   58 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~-----~i~~~~l~~k~~~i~Gs   58 (100)
                      ++|+|+++||+|. ..++.++++++++|+++.+|..... .     ..+...+..+++++.|+
T Consensus       219 ~~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~  280 (338)
T cd08295         219 PNGIDIYFDNVGG-KMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGF  280 (338)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEE
Confidence            3579999999997 6899999999999999999975431 1     13456677888999863

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=98.14  E-value=2.9e-05  Score=55.78  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=56.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++++|+++||+|....++.++++++++|+++.+|... .....+....+.+++++.+      ......+.+ +.+.++.
T Consensus       233 ~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  306 (344)
T cd08284         233 GRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRF------GRCPVRSLFPELLPLLE  306 (344)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEE------ecCCcchhHHHHHHHHH
Confidence            3579999999998789999999999999999999776 3444555667788899874      222233444 5556666


Q ss_pred             cCCCc
Q 034260           80 GQTPK   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      .+..+
T Consensus       307 ~~~i~  311 (344)
T cd08284         307 SGRLD  311 (344)
T ss_pred             cCCCC
Confidence            66433

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=98.14  E-value=3.5e-05  Score=55.22  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=55.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|.....++++++++++|+++.+|.... ..++....+.+++++.++.      ....+.+ +.+.++.++
T Consensus       234 ~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~g  306 (340)
T cd05284         234 RGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSL------WGTRAELVEVVALAESG  306 (340)
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEe------cccHHHHHHHHHHHHhC
Confidence            4799999999987789999999999999999997654 4455555567899998532      2223334 556667666


Q ss_pred             CCcce
Q 034260           82 TPKLI   86 (100)
Q Consensus        82 ~~~~i   86 (100)
                      ..+.+
T Consensus       307 ~l~~~  311 (340)
T cd05284         307 KVKVE  311 (340)
T ss_pred             CCCcc
Confidence            54443

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=98.11  E-value=3.1e-05  Score=55.63  Aligned_cols=74  Identities=19%  Similarity=0.361  Sum_probs=52.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|....+..+++.++++|+++.+|.......+.......+++++.+      +..+..+.. +.+.++.++
T Consensus       232 ~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~g  305 (341)
T cd08262         232 PKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQF------SLGYTPEEFADALDALAEG  305 (341)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEE------EecccHHHHHHHHHHHHcC
Confidence            4699999999986688999999999999999997754333343334567888874      333434444 455677666


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      .
T Consensus       306 ~  306 (341)
T cd08262         306 K  306 (341)
T ss_pred             C
Confidence            4

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=98.10  E-value=3.2e-05  Score=55.71  Aligned_cols=87  Identities=20%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChH-HHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLT-PAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~-~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      +++|+++||+|...++..++++++++|+++.+|......+++.. .+..+++++.+..   + ..+.....+.+.++.++
T Consensus       229 ~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~~  304 (340)
T TIGR00692       229 EGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGIT---G-RHMFETWYTVSRLIQSG  304 (340)
T ss_pred             CCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEe---c-CCchhhHHHHHHHHHcC
Confidence            57999999999878899999999999999999986544444444 5677888887422   1 11111222445667666


Q ss_pred             CCc--ceeeeecee
Q 034260           82 TPK--LIQATLFDL   93 (100)
Q Consensus        82 ~~~--~i~~~~~~~   93 (100)
                      ..+  .+....+++
T Consensus       305 ~l~~~~~~~~~~~l  318 (340)
T TIGR00692       305 KLDLDPIITHKFKF  318 (340)
T ss_pred             CCChHHheeeeeeH
Confidence            533  233455554

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=98.07  E-value=3.9e-05  Score=54.85  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=57.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc--ccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM--TVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~--~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      ++|+++||+|. ....+++++++++|+++.+|......  .++......+++++.+      .....++++ +.++++.+
T Consensus       225 ~~d~~ld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  297 (334)
T PRK13771        225 GADIVIETVGT-PTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIG------HISATKRDVEEALKLVAE  297 (334)
T ss_pred             CCcEEEEcCCh-HHHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEE------ecCCCHHHHHHHHHHHHc
Confidence            58999999998 47899999999999999999864321  2444445678899985      333334555 55667767


Q ss_pred             CCCcceeeeecee
Q 034260           81 QTPKLIQATLFDL   93 (100)
Q Consensus        81 ~~~~~i~~~~~~~   93 (100)
                      +..+.+....+++
T Consensus       298 ~~l~~~~~~~~~~  310 (334)
T PRK13771        298 GKIKPVIGAEVSL  310 (334)
T ss_pred             CCCcceEeeeEcH
Confidence            6554444445544

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=98.04  E-value=5e-05  Score=56.03  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             CcccEEEEccCh---------------------HHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEee
Q 034260            3 AGIDVSFDCAGL---------------------NKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFF   60 (100)
Q Consensus         3 ~G~D~vie~~G~---------------------~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~   60 (100)
                      +++|+++||+|.                     ...+++++++++++|+++.+|.... ...++...++.+++++.+   
T Consensus       253 ~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~---  329 (386)
T cd08283         253 RGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRM---  329 (386)
T ss_pred             CCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEe---
Confidence            479999999984                     3478999999999999999997654 344566567788999985   


Q ss_pred             ceeeeeechhhH-HHHHHHhcCC
Q 034260           61 FFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus        61 ~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                         +.....+.+ +.+.++..+.
T Consensus       330 ---~~~~~~~~~~~~~~~l~~g~  349 (386)
T cd08283         330 ---GQTHVQRYLPRLLELIESGE  349 (386)
T ss_pred             ---ccCCchHHHHHHHHHHHcCC
Confidence               322223334 4556666654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=98.04  E-value=5.6e-05  Score=55.14  Aligned_cols=89  Identities=21%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC--CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH--HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~--~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++++|+++||+|....++.+++.++++|+++.+|...  ....++...+..++.++.++++  +... ..... +.+.++
T Consensus       249 ~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~l~  325 (363)
T cd08279         249 GRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLY--GSAN-PRRDIPRLLDLY  325 (363)
T ss_pred             CCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEe--cCcC-cHHHHHHHHHHH
Confidence            3579999999997778999999999999999998765  3456677777778888886442  2212 23334 455667


Q ss_pred             hcCCCcc--eeeeecee
Q 034260           79 SGQTPKL--IQATLFDL   93 (100)
Q Consensus        79 ~~~~~~~--i~~~~~~~   93 (100)
                      .++..+.  +.+..+++
T Consensus       326 ~~g~l~~~~~~~~~~~~  342 (363)
T cd08279         326 RAGRLKLDELVTRRYSL  342 (363)
T ss_pred             HcCCCCcceeEEEEEcH
Confidence            6664332  23344554

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=98.03  E-value=6e-05  Score=53.73  Aligned_cols=70  Identities=11%  Similarity=0.044  Sum_probs=53.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|+++||+|. ..+++++++++++|+++.+|... ....+++..+..++.++.|      +..+.+++. +.+.++.
T Consensus       222 ~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~  293 (325)
T cd08264         222 KMADVVINSLGS-SFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIG------STGGTRKELLELVKIAK  293 (325)
T ss_pred             CCCCEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEE------ccCCCHHHHHHHHHHHH
Confidence            468999999997 68999999999999999999753 2456777778888899984      444445555 4555664

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=98.01  E-value=5.7e-05  Score=54.38  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC---cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD---MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~---~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++|+++||+|...++..++++++++|+++.+|.....   ..+++..+..+++++.|      ......+.+ +.+.+++
T Consensus       233 ~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~  306 (345)
T cd08260         233 GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVG------SHGMPAHRYDAMLALIA  306 (345)
T ss_pred             CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEe------CCcCCHHHHHHHHHHHH
Confidence            6999999999777899999999999999999986532   35566667788999985      333334444 4556676


Q ss_pred             cCCC
Q 034260           80 GQTP   83 (100)
Q Consensus        80 ~~~~   83 (100)
                      ++..
T Consensus       307 ~~~i  310 (345)
T cd08260         307 SGKL  310 (345)
T ss_pred             cCCC
Confidence            6643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.01  E-value=9.7e-05  Score=53.05  Aligned_cols=77  Identities=16%  Similarity=0.087  Sum_probs=57.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++++|+++||.+....+++++++++++|+++.+|..... .+++...++.+++++.+      ......++. +.+.++.
T Consensus       232 ~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  305 (341)
T cd08297         232 GGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVG------SLVGTRQDLQEALEFAA  305 (341)
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEE------eccCCHHHHHHHHHHHH
Confidence            457999999988888999999999999999999976543 35666667789999984      332223444 5556776


Q ss_pred             cCCCc
Q 034260           80 GQTPK   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      ++..+
T Consensus       306 ~~~l~  310 (341)
T cd08297         306 RGKVK  310 (341)
T ss_pred             cCCCc
Confidence            66543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.98  E-value=8.4e-05  Score=50.94  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCccc-ChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTV-PLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i-~~~~l~~k~~~i~G   57 (100)
                      ++++|+++||+|.....+.+++.++++|+++.+|........ .....+.+++++.|
T Consensus       199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (271)
T cd05188         199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIG  255 (271)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEE
Confidence            357999999999867899999999999999999987653322 24556789999995

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=97.97  E-value=7.4e-05  Score=53.60  Aligned_cols=72  Identities=22%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|....++++++.++++|+++.+|....+.++++..+..+++++.+      .... .+.. +.+.++..+.
T Consensus       231 ~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~  303 (339)
T cd08232         231 DFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRG------SFRF-DDEFAEAVRLLAAGR  303 (339)
T ss_pred             CccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEE------EecC-HHHHHHHHHHHHcCC
Confidence            599999999977789999999999999999986654455566666778888874      3333 2334 4455666654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=97.95  E-value=8.9e-05  Score=52.59  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      |+++|+++||+|.. ..++++++++++|+++.+|.... ..++++..+..++.++.++.
T Consensus       206 ~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (324)
T cd08292         206 GAPISVALDSVGGK-LAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFW  263 (324)
T ss_pred             CCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEE
Confidence            45899999999984 78999999999999999997643 45566666778999998643

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=97.94  E-value=2.8e-06  Score=53.16  Aligned_cols=86  Identities=15%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             CCcccEEEEccC--hHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeee---chhhHHH-H
Q 034260            2 GAGIDVSFDCAG--LNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGY---SVIYFRK-M   75 (100)
Q Consensus         2 G~G~D~vie~~G--~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~---~~~~~~~-i   75 (100)
                      ++++|+||||+|  .+..+..+.+++ ++|+++.+|.     .+.......+...+.+.++  .+...   ..+..+. +
T Consensus        17 ~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~   88 (127)
T PF13602_consen   17 PGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFL--FSVDPNAIRAEALEELA   88 (127)
T ss_dssp             TS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECC--C-H--HHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEE--EecCCCchHHHHHHHHH
Confidence            358999999999  655557777888 9999999983     2111222122333332211  11111   1233444 5


Q ss_pred             HHHhcCCCcceeeeeceeee
Q 034260           76 LYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        76 ~~l~~~~~~~i~~~~~~~~~   95 (100)
                      .+++++..+......|||+-
T Consensus        89 ~l~~~G~l~~~i~~~f~l~~  108 (127)
T PF13602_consen   89 ELVAEGKLKPPIDRVFPLEE  108 (127)
T ss_dssp             HHHHTTSS---EEEEEEGGG
T ss_pred             HHHHCCCeEEeeccEECHHH
Confidence            67888888887778898863

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=97.91  E-value=0.00016  Score=51.88  Aligned_cols=76  Identities=20%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|....+..+++.++++|+++.+|.......++...+..+++++.+      +.....+.. +.+.++.++
T Consensus       226 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~  299 (337)
T cd08261         226 EGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILG------SRNATREDFPDVIDLLESG  299 (337)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEE------eccCChhhHHHHHHHHHcC
Confidence            4689999999987889999999999999999987765555666666778888874      322223334 445566666


Q ss_pred             CCc
Q 034260           82 TPK   84 (100)
Q Consensus        82 ~~~   84 (100)
                      ..+
T Consensus       300 ~i~  302 (337)
T cd08261         300 KVD  302 (337)
T ss_pred             CCC
Confidence            543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.91  E-value=0.00014  Score=51.57  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|+++||+|. ..+..++++++++|+++.+|..... ..++...++.+++++.++.      ....+.+ +.+.++.+
T Consensus       228 ~~~d~~i~~~~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~  300 (336)
T cd08276         228 RGVDHVVEVGGP-GTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIA------VGSRAQFEAMNRAIEA  300 (336)
T ss_pred             CCCcEEEECCCh-HHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEe------cCcHHHHHHHHHHHHc
Confidence            579999999995 6789999999999999999976542 3455566778999999633      2223334 55666666


Q ss_pred             CCCcceeeeece
Q 034260           81 QTPKLIQATLFD   92 (100)
Q Consensus        81 ~~~~~i~~~~~~   92 (100)
                      +..+.+....++
T Consensus       301 ~~l~~~~~~~~~  312 (336)
T cd08276         301 HRIRPVIDRVFP  312 (336)
T ss_pred             CCcccccCcEEe
Confidence            554433334443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=97.90  E-value=0.00017  Score=50.83  Aligned_cols=81  Identities=12%  Similarity=0.069  Sum_probs=55.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++++|+++||+|....++.++++++++|+++.+|... .+.++++..+..+++++.+...  .......+.. +.+.++.
T Consensus       196 ~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  273 (312)
T cd08269         196 GAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVE--RDPRIGLEGMREAVKLIA  273 (312)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecc--cCccchhhHHHHHHHHHH
Confidence            3579999999998788999999999999999999764 2345666677788888875221  1111112334 4455666


Q ss_pred             cCCCc
Q 034260           80 GQTPK   84 (100)
Q Consensus        80 ~~~~~   84 (100)
                      ++..+
T Consensus       274 ~~~l~  278 (312)
T cd08269         274 DGRLD  278 (312)
T ss_pred             cCCCC
Confidence            66433

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05281 TDH Threonine dehydrogenase

Probab=97.90  E-value=0.00011  Score=52.94  Aligned_cols=75  Identities=16%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChH-HHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLT-PAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~-~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|+++||+|....+++++++++++|+++.+|.......+++. .+..+++++.++.    .... .+.+ +.+.++.+
T Consensus       230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~l~~  304 (341)
T cd05281         230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGIT----GRKM-FETWYQVSALLKS  304 (341)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEe----cCCc-chhHHHHHHHHHc
Confidence            57999999999888899999999999999999876544444432 3667888887522    1111 2233 44566766


Q ss_pred             CC
Q 034260           81 QT   82 (100)
Q Consensus        81 ~~   82 (100)
                      +.
T Consensus       305 ~~  306 (341)
T cd05281         305 GK  306 (341)
T ss_pred             CC
Confidence            64

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=97.89  E-value=0.00017  Score=51.77  Aligned_cols=74  Identities=15%  Similarity=0.155  Sum_probs=54.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|+++||+|....+..++++++++|+++.+|....  ...+++..+..+++++.+      +....++.. +.+.++.
T Consensus       233 ~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~l~~  306 (343)
T cd08235         233 RGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITG------SYAASPEDYKEALELIA  306 (343)
T ss_pred             cCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEE------EecCChhhHHHHHHHHH
Confidence            4699999999987789999999999999999987543  245666667788888874      333334444 4456666


Q ss_pred             cCC
Q 034260           80 GQT   82 (100)
Q Consensus        80 ~~~   82 (100)
                      .+.
T Consensus       307 ~~~  309 (343)
T cd08235         307 SGK  309 (343)
T ss_pred             cCC
Confidence            664

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.89  E-value=8.4e-05  Score=52.89  Aligned_cols=56  Identities=23%  Similarity=0.141  Sum_probs=43.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC---C----cccChHHHHhcCcEEEeE
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH---D----MTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~---~----~~i~~~~l~~k~~~i~Gs   58 (100)
                      ++|+|+++||+|. ..++.++++++++|+++.+|....   +    .+.....+..+++++.|+
T Consensus       209 ~~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  271 (329)
T cd08294         209 PDGIDCYFDNVGG-EFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGF  271 (329)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEE
Confidence            3579999999998 688999999999999999986421   1    122334577889999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=97.89  E-value=8.7e-05  Score=54.61  Aligned_cols=87  Identities=14%  Similarity=0.098  Sum_probs=54.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhcc-CCCEEEEecCCCCC--cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATR-AGDKVCLVGMGHHD--MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~-~gGrvv~vG~~~~~--~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +++|+++||+|.+.++.+++..++ ++|+++.+|.....  .+++... +.++++++|++.  +.+. .+.+. +.+..+
T Consensus       259 ~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~-~~~~~~~~~~~~  334 (373)
T cd08299         259 GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-LLTGRTWKGAVF--GGWK-SKDSVPKLVADY  334 (373)
T ss_pred             CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-HhcCCeEEEEEe--cCCc-cHHHHHHHHHHH
Confidence            469999999998888999888775 79999999987543  3444432 356789986542  2222 12333 444555


Q ss_pred             hcC--CCcceeeeecee
Q 034260           79 SGQ--TPKLIQATLFDL   93 (100)
Q Consensus        79 ~~~--~~~~i~~~~~~~   93 (100)
                      .++  +.+.+..+.+++
T Consensus       335 ~~~~~~~~~~~~~~~~l  351 (373)
T cd08299         335 MAKKFNLDPLITHTLPF  351 (373)
T ss_pred             HcCCCCchhheeeeecH
Confidence            544  233234455554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=97.88  E-value=0.0001  Score=54.06  Aligned_cols=85  Identities=20%  Similarity=0.310  Sum_probs=57.6

Q ss_pred             CcccEEEEccChHH-----------HHHHHHHhccCCCEEEEecCCCC-------------CcccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNK-----------TMSTVLDATRAGDKVCLVGMGHH-------------DMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~-----------~~~~al~~l~~gGrvv~vG~~~~-------------~~~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|+++||+|...           ++++++++++++|+++.+|....             ...++...+..++.++.+ 
T Consensus       242 ~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  320 (375)
T cd08282         242 GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGT-  320 (375)
T ss_pred             CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEE-
Confidence            46899999999763           68999999999999999987532             123566667788888874 


Q ss_pred             eeceeeeeechhhH-HHHHHHhcCCCcc--eeeeecee
Q 034260           59 FFFFLVLGYSVIYF-RKMLYISGQTPKL--IQATLFDL   93 (100)
Q Consensus        59 ~~~~g~~~~~~~~~-~~i~~l~~~~~~~--i~~~~~~~   93 (100)
                           +.....+.. +.+.++.++..+.  +....+++
T Consensus       321 -----~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l  353 (375)
T cd08282         321 -----GQAPVKKYNRQLRDLILAGRAKPSFVVSHVISL  353 (375)
T ss_pred             -----ecCCchhhHHHHHHHHHcCCCChHHcEEEEeeH
Confidence                 333333444 4456676665443  23455554

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=97.85  E-value=0.00019  Score=51.40  Aligned_cols=75  Identities=16%  Similarity=0.116  Sum_probs=54.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|.++++++....+++++++++++|+++.+|......+++...+..++.++.|      +....++++ +.+.++.++.
T Consensus       230 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~g~  303 (338)
T PRK09422        230 GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVG------SLVGTRQDLEEAFQFGAEGK  303 (338)
T ss_pred             CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEE------ecCCCHHHHHHHHHHHHhCC
Confidence            578666666677899999999999999999997765556677777788999885      333334444 4556776664


Q ss_pred             Cc
Q 034260           83 PK   84 (100)
Q Consensus        83 ~~   84 (100)
                      .+
T Consensus       304 l~  305 (338)
T PRK09422        304 VV  305 (338)
T ss_pred             CC
Confidence            33

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=97.82  E-value=0.00025  Score=50.18  Aligned_cols=56  Identities=18%  Similarity=0.113  Sum_probs=45.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|.. ..+.++++++++|+++.+|.... ..+++....+.+++++.++.
T Consensus       210 ~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08244         210 GGVTVVLDGVGGA-IGRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLL  266 (324)
T ss_pred             CCceEEEECCChH-hHHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEee
Confidence            5799999999986 56999999999999999997653 33566566678899998643

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=97.81  E-value=0.0002  Score=52.23  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=54.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeec-hhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYS-VIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~-~~~~-~~i~~   77 (100)
                      ++++|+++||+|....++.++++++++|+++.+|....  ...++...++.+++++.+      +.... .+.. +.+.+
T Consensus       254 ~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l  327 (367)
T cd08263         254 GRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIG------SYGARPRQDLPELVGL  327 (367)
T ss_pred             CCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEe------cCCCCcHHHHHHHHHH
Confidence            35799999999986589999999999999999987653  345666666678888885      32222 2334 44566


Q ss_pred             HhcCCCc
Q 034260           78 ISGQTPK   84 (100)
Q Consensus        78 l~~~~~~   84 (100)
                      +.++..+
T Consensus       328 l~~~~l~  334 (367)
T cd08263         328 AASGKLD  334 (367)
T ss_pred             HHcCCCC
Confidence            7666533

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=97.79  E-value=0.00032  Score=50.39  Aligned_cols=57  Identities=28%  Similarity=0.366  Sum_probs=45.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc---cChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT---VPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~---i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|....+..++++++++|+++.+|.......   .+...+..++.++.|+.
T Consensus       226 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (343)
T cd08236         226 RGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSW  285 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEe
Confidence            4699999999987789999999999999999997654422   23445668899998644

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=97.77  E-value=0.00034  Score=49.95  Aligned_cols=74  Identities=18%  Similarity=0.221  Sum_probs=52.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|+++||+|....+..+++.++++|+++.+|....  ..+++...+..+++++.+      .... .... +.+.++.
T Consensus       225 ~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~  297 (334)
T cd08234         225 YGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIG------SFIN-PYTFPRAIALLE  297 (334)
T ss_pred             CCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEE------eccC-HHHHHHHHHHHH
Confidence            5799999999987889999999999999999997653  344555555567888874      3222 2334 4455666


Q ss_pred             cCCC
Q 034260           80 GQTP   83 (100)
Q Consensus        80 ~~~~   83 (100)
                      ++..
T Consensus       298 ~~~l  301 (334)
T cd08234         298 SGKI  301 (334)
T ss_pred             cCCC
Confidence            6543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=97.75  E-value=0.00031  Score=48.95  Aligned_cols=57  Identities=21%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|....++.++++++++|+++.+|............+..++.++.+..
T Consensus       158 ~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  214 (277)
T cd08255         158 RGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQ  214 (277)
T ss_pred             CCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEeec
Confidence            579999999998888999999999999999999875441112234556777777543

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=97.73  E-value=0.00031  Score=49.73  Aligned_cols=57  Identities=16%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      |+++|+++||+|.. ....++++++++|+++.+|.... +..+++..+..++.++.+..
T Consensus       205 ~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
T cd05282         205 GAGARLALDAVGGE-SATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFW  262 (323)
T ss_pred             CCCceEEEECCCCH-HHHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEE
Confidence            45799999999985 56788999999999999987654 34566666666899998644

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=97.72  E-value=0.00047  Score=48.76  Aligned_cols=84  Identities=17%  Similarity=0.147  Sum_probs=57.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|++++++|. ..+++++++++++|+++.+|.... ...++....+.+++++.+      .......++ +.+.++.+
T Consensus       234 ~~~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~  306 (342)
T cd08266         234 RGVDVVVEHVGA-ATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILG------STMGTKAELDEALRLVFR  306 (342)
T ss_pred             CCCcEEEECCcH-HHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEE------EecCCHHHHHHHHHHHHc
Confidence            478999999997 578999999999999999987654 334555556678888885      333333444 55667766


Q ss_pred             CCCcceeeeecee
Q 034260           81 QTPKLIQATLFDL   93 (100)
Q Consensus        81 ~~~~~i~~~~~~~   93 (100)
                      +..+.+....+++
T Consensus       307 ~~l~~~~~~~~~~  319 (342)
T cd08266         307 GKLKPVIDSVFPL  319 (342)
T ss_pred             CCcccceeeeEcH
Confidence            6544334444443

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.71  E-value=7.6e-05  Score=53.53  Aligned_cols=88  Identities=20%  Similarity=0.296  Sum_probs=60.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeee--chhhH-HH---
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGY--SVIYF-RK---   74 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~--~~~~~-~~---   74 (100)
                      |+|+|+++|.+|. +++..++++++++|++|.+|.... ..+++.+.+.-|.+.+.-..    .++|  .+.++ ..   
T Consensus       213 gKGVd~vyDsvG~-dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrps----l~gYi~g~~el~~~v~r  287 (336)
T KOG1197|consen  213 GKGVDAVYDSVGK-DTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPS----LLGYIDGEVELVSYVAR  287 (336)
T ss_pred             CCCceeeeccccc-hhhHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHh----hhcccCCHHHHHHHHHH
Confidence            7899999999997 699999999999999999998875 34566666666666665321    1222  23322 11   


Q ss_pred             -HHHHhcCCCcceeeeeceee
Q 034260           75 -MLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        75 -i~~l~~~~~~~i~~~~~~~~   94 (100)
                       ..+..++..|.-.+..+||+
T Consensus       288 l~alvnsg~lk~~I~~~ypls  308 (336)
T KOG1197|consen  288 LFALVNSGHLKIHIDHVYPLS  308 (336)
T ss_pred             HHHHhhcCccceeeeeecchH
Confidence             23444566676666777764

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=97.69  E-value=0.00039  Score=49.39  Aligned_cols=55  Identities=20%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+++||+|.. .+++++++++++|+++.+|.... ..+++...++.+++++.++.
T Consensus       211 ~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T TIGR02823       211 RWAGAVDTVGGH-TLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGID  266 (323)
T ss_pred             CceEEEECccHH-HHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEe
Confidence            589999999975 78999999999999999998653 34445566668899998643

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.69  E-value=0.00047  Score=49.21  Aligned_cols=83  Identities=14%  Similarity=0.088  Sum_probs=55.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc-ccChHHHHhcCcEEEeEeeceeeeeechhhHHH-HHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM-TVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRK-MLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~-~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~-i~~l~~   80 (100)
                      +++|++++|++....+++++++++++|+++.+|...... .++... +.++..+.+      +.....+.... +.++.+
T Consensus       224 ~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~------~~~~~~~~~~~~~~l~~~  296 (329)
T cd08298         224 EPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRS------VANLTRQDGEEFLKLAAE  296 (329)
T ss_pred             CcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEE------ecCCCHHHHHHHHHHHHc
Confidence            478999999888889999999999999999998644222 234433 467888874      44444444444 455656


Q ss_pred             CCCcceeeeecee
Q 034260           81 QTPKLIQATLFDL   93 (100)
Q Consensus        81 ~~~~~i~~~~~~~   93 (100)
                      +..+.+. ..+++
T Consensus       297 ~~l~~~~-~~~~~  308 (329)
T cd08298         297 IPIKPEV-ETYPL  308 (329)
T ss_pred             CCCCceE-EEEeH
Confidence            5544443 44543

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=97.68  E-value=0.00017  Score=51.25  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=45.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|+++||+|. ..+++++++++++|+++.+|.... ..++++..++.+++++.+.
T Consensus       212 ~~~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (326)
T cd08289         212 QRWAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGI  267 (326)
T ss_pred             CCcCEEEECCcH-HHHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEE
Confidence            469999999998 689999999999999999998643 3445566677899999964

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.67  E-value=0.00047  Score=48.48  Aligned_cols=87  Identities=13%  Similarity=0.003  Sum_probs=55.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHh--cCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAA--RYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~--k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +++|+++||+|.. .+.+++++++++|+++.+|.... ...+++..+..  ++.++.++..  +......... ..+.++
T Consensus       191 ~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  267 (305)
T cd08270         191 APVDLVVDSVGGP-QLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFL--YDGEPLAADLARLLGLV  267 (305)
T ss_pred             CCceEEEECCCcH-HHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEc--cCHHHHHHHHHHHHHHH
Confidence            3689999999975 78999999999999999997653 34456665555  6888886442  1100112233 334566


Q ss_pred             hcCCCcceeeeece
Q 034260           79 SGQTPKLIQATLFD   92 (100)
Q Consensus        79 ~~~~~~~i~~~~~~   92 (100)
                      .++..+.+....++
T Consensus       268 ~~~~i~~~~~~~~~  281 (305)
T cd08270         268 AAGRLDPRIGWRGS  281 (305)
T ss_pred             HCCCccceeccEEc
Confidence            66654443334444

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=97.66  E-value=0.00048  Score=48.85  Aligned_cols=57  Identities=18%  Similarity=0.242  Sum_probs=45.4

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-Ccc-cChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMT-VPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~-i~~~~l~~k~~~i~Gs~   59 (100)
                      ++++|+++||+|. ..++.++++++++|+++.+|.... ... ++...+..+++++.++.
T Consensus       208 ~~~~d~~i~~~~~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (334)
T PTZ00354        208 EKGVNLVLDCVGG-SYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFST  266 (334)
T ss_pred             CCCceEEEECCch-HHHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeee
Confidence            3579999999996 688999999999999999996543 233 66666778888998644

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=97.66  E-value=0.00036  Score=50.05  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=51.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccCh-HHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL-TPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|+++||+|....++.+++.++++|+++.+|.......... ...+.+++++.+      +.....+.. +.+.++.+
T Consensus       235 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  308 (347)
T cd05278         235 RGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKT------GLVPVRARMPELLDLIEE  308 (347)
T ss_pred             CCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEe------eccCchhHHHHHHHHHHc
Confidence            5799999999986789999999999999999996654322212 223467888874      222223344 44566766


Q ss_pred             CCCc
Q 034260           81 QTPK   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +..+
T Consensus       309 ~~l~  312 (347)
T cd05278         309 GKID  312 (347)
T ss_pred             CCCC
Confidence            6443

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=97.60  E-value=0.00051  Score=48.85  Aligned_cols=55  Identities=24%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-c-----ccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-M-----TVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~-----~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|+++||+|. ..++.++++++++|+++.+|..... .     .++......++.++.++
T Consensus       213 ~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (329)
T cd05288         213 DGIDVYFDNVGG-EILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGF  273 (329)
T ss_pred             CCceEEEEcchH-HHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEee
Confidence            479999999997 6899999999999999999865432 1     13345567889999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=97.59  E-value=0.001  Score=47.45  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|+++||++......+++++++++|+++.+|..... ...+...++.++.++.+      +.....+.. +.+.++.+
T Consensus       224 ~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ll~~  297 (330)
T cd08245         224 GGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAG------STHGGRADLQEALDFAAE  297 (330)
T ss_pred             CCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEE------eccCCHHHHHHHHHHHHc
Confidence            36899999999878999999999999999999876432 22334557788999985      333333444 44556666


Q ss_pred             CCCc
Q 034260           81 QTPK   84 (100)
Q Consensus        81 ~~~~   84 (100)
                      +..+
T Consensus       298 ~~l~  301 (330)
T cd08245         298 GKVK  301 (330)
T ss_pred             CCCc
Confidence            6544

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=97.58  E-value=0.00045  Score=48.92  Aligned_cols=56  Identities=20%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|. ..+++++++++++|+++.+|.... +..+++..++.+++++.++.
T Consensus       212 ~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  268 (325)
T cd05280         212 ARWAGAIDTVGG-DVLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGID  268 (325)
T ss_pred             CCccEEEECCch-HHHHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEE
Confidence            468999999998 589999999999999999997653 33555555667899998644

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=97.50  E-value=0.0014  Score=45.83  Aligned_cols=56  Identities=16%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc-cChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT-VPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~-i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|. ..++.++++++++|+++.+|....... ++......+++++.++.
T Consensus       207 ~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
T cd08241         207 RGVDVVYDPVGG-DVFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVY  263 (323)
T ss_pred             CCcEEEEECccH-HHHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEe
Confidence            479999999997 678999999999999999997654332 45555677899998643

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.48  E-value=0.0012  Score=47.44  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=30.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      ++|+|+++||+|.. .+++++++++++|+++.+|..
T Consensus       222 ~~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~  256 (345)
T cd08293         222 PEGVDVYFDNVGGE-ISDTVISQMNENSHIILCGQI  256 (345)
T ss_pred             CCCceEEEECCCcH-HHHHHHHHhccCCEEEEEeee
Confidence            35799999999985 579999999999999999853

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.43  E-value=0.0021  Score=45.55  Aligned_cols=83  Identities=14%  Similarity=0.140  Sum_probs=55.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      ++|++++|+|.. ...+++++++++|+++.+|..... ..++......++.++.+      +..+...+. +.+.++.++
T Consensus       226 ~~d~v~~~~g~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  298 (332)
T cd08259         226 GADVVIELVGSP-TIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIG------SISATKADVEEALKLVKEG  298 (332)
T ss_pred             CCCEEEECCChH-HHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEE------ecCCCHHHHHHHHHHHHcC
Confidence            589999999975 588999999999999999876532 22344445567888874      333334444 455667666


Q ss_pred             CCcceeeeecee
Q 034260           82 TPKLIQATLFDL   93 (100)
Q Consensus        82 ~~~~i~~~~~~~   93 (100)
                      ..+.+.+..+++
T Consensus       299 ~l~~~~~~~~~~  310 (332)
T cd08259         299 KIKPVIDRVVSL  310 (332)
T ss_pred             CCccceeEEEcH
Confidence            544444445443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=97.41  E-value=0.0011  Score=46.54  Aligned_cols=55  Identities=22%  Similarity=0.264  Sum_probs=40.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc---cChHHHH--hcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT---VPLTPAA--ARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~---i~~~~l~--~k~~~i~G   57 (100)
                      ++++|+++||+|. ..++.++++++++|+++.+|....+.+   .......  .+++++.+
T Consensus       206 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (320)
T cd08243         206 PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTG  265 (320)
T ss_pred             CCCceEEEECCCh-HHHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEe
Confidence            4579999999997 689999999999999999997543221   2222222  56777764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=97.38  E-value=0.0023  Score=44.63  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=44.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|.. .+..++++++++|+++.+|.... ...+++..++.+++++.++.
T Consensus       207 ~~~d~vi~~~g~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
T cd05276         207 RGVDVILDMVGGD-YLARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGST  263 (323)
T ss_pred             CCeEEEEECCchH-HHHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEee
Confidence            5799999999975 48889999999999999997643 34556666667899999754

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=97.34  E-value=0.0024  Score=44.43  Aligned_cols=55  Identities=24%  Similarity=0.300  Sum_probs=43.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~G   57 (100)
                      ++++|++++|+|. ...+.++++++++|+++.+|..... ..+++..+..+++++.+
T Consensus       203 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  258 (320)
T cd05286         203 GRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTR  258 (320)
T ss_pred             CCCeeEEEECCCc-HhHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEE
Confidence            3579999999997 5889999999999999999976543 23455555578888874

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=97.32  E-value=0.0018  Score=46.38  Aligned_cols=55  Identities=13%  Similarity=0.197  Sum_probs=44.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+++||+|.. ....++++++++|+++.+|.... +..+++..++.++.++.++.
T Consensus       221 ~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  276 (341)
T cd08290         221 RPKLALNCVGGK-SATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFW  276 (341)
T ss_pred             CceEEEECcCcH-hHHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEe
Confidence            689999999985 67789999999999999986543 34566666778999998644

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=97.28  E-value=0.0012  Score=47.13  Aligned_cols=55  Identities=13%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|....+..++++++++|+++.+|...  ..++...+..+++++.++.
T Consensus       216 ~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~  270 (336)
T cd08252         216 EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEF  270 (336)
T ss_pred             CCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEE
Confidence            479999999998789999999999999999998653  3455555557888988644

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=97.25  E-value=0.0016  Score=47.51  Aligned_cols=88  Identities=13%  Similarity=0.037  Sum_probs=62.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeee---chhhH-HH---H
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGY---SVIYF-RK---M   75 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~---~~~~~-~~---i   75 (100)
                      ++-+.++|+|..+ -.+..+.+..||+.+..|... +|++++...+++|++.++|-|+  +.|.-   .++.+ +.   +
T Consensus       233 ~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWv--t~W~~~~~~pe~~~~~i~~~  309 (354)
T KOG0025|consen  233 RPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWV--TRWKKEHKSPEERKEMIDEL  309 (354)
T ss_pred             CceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeee--eehhhccCCcHHHHHHHHHH
Confidence            4778999999864 556678899999999998665 5889999999999999998775  55532   12222 22   2


Q ss_pred             -HHHhcCCCcceeeeeceee
Q 034260           76 -LYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        76 -~~l~~~~~~~i~~~~~~~~   94 (100)
                       .++..+..+.+.+..-+|+
T Consensus       310 ~~l~~~G~i~~~~~e~v~L~  329 (354)
T KOG0025|consen  310 CDLYRRGKLKAPNCEKVPLA  329 (354)
T ss_pred             HHHHHcCeeccccceeeech
Confidence             3445566665555555554

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=97.21  E-value=0.004  Score=43.60  Aligned_cols=56  Identities=20%  Similarity=0.250  Sum_probs=45.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|++++|+|. .....++++++++|+++.+|.... ...+++..++.+++++.++.
T Consensus       207 ~~~d~~i~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  263 (325)
T TIGR02824       207 KGVDVILDIVGG-SYLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGST  263 (325)
T ss_pred             CCeEEEEECCch-HHHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEe
Confidence            479999999997 478899999999999999997642 23566666668999999644

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.18  E-value=0.0045  Score=43.44  Aligned_cols=53  Identities=28%  Similarity=0.385  Sum_probs=40.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|. ...+.++++++++|+++.+|... .  .++.....+++++.+..
T Consensus       210 ~~~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~~-~--~~~~~~~~~~~~~~~~~  262 (326)
T cd08272         210 RGFDVVFDTVGG-ETLDASFEAVALYGRVVSILGGA-T--HDLAPLSFRNATYSGVF  262 (326)
T ss_pred             CCCcEEEECCCh-HHHHHHHHHhccCCEEEEEecCC-c--cchhhHhhhcceEEEEE
Confidence            479999999998 46888999999999999998764 2  23333347788887543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=97.03  E-value=0.0062  Score=42.32  Aligned_cols=80  Identities=16%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|+++||+|.. ..+.++++++++|+++.+|.......    ....++.++....     .....+.+ +.+.++.++
T Consensus       207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  276 (309)
T cd05289         207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVF-----VEPDGEQLAELAELVEAG  276 (309)
T ss_pred             CCceEEEECCchH-HHHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEE-----ecccHHHHHHHHHHHHCC
Confidence            4689999999986 78999999999999999997654211    3345566666321     11112334 445566555


Q ss_pred             CCcceeeeece
Q 034260           82 TPKLIQATLFD   92 (100)
Q Consensus        82 ~~~~i~~~~~~   92 (100)
                      ..+.+.+..++
T Consensus       277 ~~~~~~~~~~~  287 (309)
T cd05289         277 KLRPVVDRVFP  287 (309)
T ss_pred             CEEEeeccEEc
Confidence            43333334444

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=97.03  E-value=0.003  Score=46.25  Aligned_cols=57  Identities=21%  Similarity=0.205  Sum_probs=44.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC---C-ccc---ChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH---D-MTV---PLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~---~-~~i---~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+|+.||++|. ..++..+..++..+|+.++|.-..   + .+.   .+..++.++++++|-+
T Consensus       217 P~GIDvyfeNVGg-~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfi  280 (340)
T COG2130         217 PKGIDVYFENVGG-EVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFI  280 (340)
T ss_pred             CCCeEEEEEcCCc-hHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEE
Confidence            4689999999998 599999999999999999997432   1 221   2345778899999744

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=96.96  E-value=0.0063  Score=42.52  Aligned_cols=54  Identities=22%  Similarity=0.341  Sum_probs=43.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~G   57 (100)
                      +++|++++|+|.. ..+.++++++++|+++.+|.......+++..++.+..++.+
T Consensus       212 ~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~  265 (325)
T cd08253         212 QGVDVIIEVLANV-NLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRG  265 (325)
T ss_pred             CceEEEEECCchH-HHHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEe
Confidence            4799999999985 67888999999999999997654445666666677888874

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.95  E-value=0.01  Score=41.95  Aligned_cols=56  Identities=13%  Similarity=0.080  Sum_probs=42.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-----------------cccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-----------------MTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-----------------~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +++|+++||+|.. ..+.++++++++|+++.+|.....                 .++++..+..++++++++.
T Consensus       205 ~~~d~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (337)
T cd08275         205 EGVDIVLDALGGE-DTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFN  277 (337)
T ss_pred             CCceEEEECCcHH-HHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEee
Confidence            4689999999974 688999999999999999876421                 1223345678889988643

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=96.94  E-value=0.0087  Score=42.71  Aligned_cols=52  Identities=6%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~G   57 (100)
                      +++|+++||+|....+..++++++++|+++.++..   ..+++..+..+++++.+
T Consensus       215 ~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~  266 (336)
T TIGR02817       215 EAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHW  266 (336)
T ss_pred             CCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEE
Confidence            47999999997777899999999999999988532   34555556667777764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.68  E-value=0.02  Score=40.17  Aligned_cols=38  Identities=29%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             CCcccEEEEccCh-HHHHHHHHHhccCCCEEEEecCCCC
Q 034260            2 GAGIDVSFDCAGL-NKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         2 G~G~D~vie~~G~-~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++++|+++||+|. ......+...++++|+++.+|....
T Consensus       206 ~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~  244 (319)
T cd08267         206 GEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPS  244 (319)
T ss_pred             CCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccc
Confidence            3579999999994 3344455555999999999997654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=96.39  E-value=0.012  Score=43.21  Aligned_cols=55  Identities=20%  Similarity=0.248  Sum_probs=44.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-----Cccc-ChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-----DMTV-PLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-----~~~i-~~~~l~~k~~~i~G   57 (100)
                      ..|+|+-||.+|. ..++..+..++..||++++|+-..     +..+ +...++.|+++|+|
T Consensus       221 P~GIDiYfeNVGG-~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqg  281 (343)
T KOG1196|consen  221 PEGIDIYFENVGG-KMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQG  281 (343)
T ss_pred             CCcceEEEeccCc-HHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeee
Confidence            3589999999998 589999999999999999997542     2222 44567899999997

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.35  E-value=0.009  Score=44.24  Aligned_cols=92  Identities=20%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChH-------HHHhcCcEEEeEeeceeeeeechhhHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLT-------PAAARYLIYGFLFFFFLVLGYSVIYFR   73 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~-------~l~~k~~~i~Gs~~~~g~~~~~~~~~~   73 (100)
                      +.++|+|+||+|.. +...++..+..+|+...++..... ...+..       .+......+.+-.+..+....+.+..+
T Consensus       223 ~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  301 (347)
T KOG1198|consen  223 GKGVDVVLDCVGGS-TLTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLK  301 (347)
T ss_pred             CCCccEEEECCCCC-ccccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHH
Confidence            46899999999985 788888889988887777766542 111111       111122222222221122233344444


Q ss_pred             HH-HHHhcCCCcceeeeeceee
Q 034260           74 KM-LYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        74 ~i-~~l~~~~~~~i~~~~~~~~   94 (100)
                      .+ .++..+..+......+|++
T Consensus       302 ~l~~~ie~gkikp~i~~~~p~~  323 (347)
T KOG1198|consen  302 ALVELIEKGKIKPVIDSVYPFS  323 (347)
T ss_pred             HHHHHHHcCcccCCcceeeeHH
Confidence            43 5677777666666666654

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=96.32  E-value=0.0063  Score=43.90  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccC--CCEEEEecCCCC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRA--GDKVCLVGMGHH   39 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~--gGrvv~vG~~~~   39 (100)
                      ++++|+++|++|.+..++++++++++  +|+++.+|....
T Consensus       219 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~  258 (339)
T cd08249         219 GGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPE  258 (339)
T ss_pred             CCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCc
Confidence            45799999999987789999999999  999999987654

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=96.27  E-value=0.052  Score=38.43  Aligned_cols=55  Identities=24%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|.++||+|. ..+..++..++.+|+++.+|.... +.++++..++.++.++.|+.
T Consensus       212 ~~~~~~d~~~~-~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  267 (324)
T cd08288         212 RWAGAVDTVGG-HTLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGID  267 (324)
T ss_pred             cccEEEECCcH-HHHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEE
Confidence            57889999997 468889999999999999997642 33455555668899999643

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>smart00829 PKS_ER Enoylreductase

Probab=96.25  E-value=0.021  Score=39.09  Aligned_cols=53  Identities=17%  Similarity=0.307  Sum_probs=40.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~G   57 (100)
                      +++|+++||+|. ..++.+++.++++|+++.+|....  ...+++.. +.++.++.+
T Consensus       174 ~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~  228 (288)
T smart00829      174 RGVDVVLNSLAG-EFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHA  228 (288)
T ss_pred             CCcEEEEeCCCH-HHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEE
Confidence            479999999995 688999999999999999997642  23444444 456677764

Enoylreductase in Polyketide synthases.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=96.18  E-value=0.0095  Score=40.77  Aligned_cols=54  Identities=13%  Similarity=0.185  Sum_probs=39.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC--cccChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD--MTVPLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~--~~i~~~~l~~k~~~i~G   57 (100)
                      ++++|+++||+|.. .++.++++++++|+++.+|.....  ..++... ..+..++.+
T Consensus       177 ~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~  232 (293)
T cd05195         177 GRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSS  232 (293)
T ss_pred             CCCceEEEeCCCch-HHHHHHHhcccCceEEEeeccccccCCccchhh-hccCCeEEE
Confidence            45799999999986 899999999999999999976532  2233332 334555553

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=96.16  E-value=0.032  Score=39.68  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=41.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-----------cccChHHHHhcCcEEEeE
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-----------MTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-----------~~i~~~~l~~k~~~i~Gs   58 (100)
                      ++++|+++||+|. ..+..+++.++++|+++.+|.....           ..++ ...+.++.++.++
T Consensus       205 ~~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  270 (329)
T cd08250         205 PKGVDVVYESVGG-EMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGF  270 (329)
T ss_pred             CCCCeEEEECCcH-HHHHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEE
Confidence            3579999999997 6899999999999999999876421           1222 2346788888853

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=96.16  E-value=0.011  Score=42.15  Aligned_cols=46  Identities=22%  Similarity=0.252  Sum_probs=35.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPA   48 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l   48 (100)
                      |+++|+++||+|. ..+.+++++++++|+++.+|..... ..++...+
T Consensus       207 ~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~  253 (327)
T PRK10754        207 GKKVRVVYDSVGK-DTWEASLDCLQRRGLMVSFGNASGPVTGVNLGIL  253 (327)
T ss_pred             CCCeEEEEECCcH-HHHHHHHHHhccCCEEEEEccCCCCCCCcCHHHH
Confidence            3579999999997 5788999999999999999976532 23444443

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.10  E-value=0.029  Score=39.23  Aligned_cols=55  Identities=25%  Similarity=0.362  Sum_probs=43.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|++++|+|. .....++++++++|+++.+|.... ...++....+.++.++.+.
T Consensus       212 ~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  267 (328)
T cd08268         212 KGVDVVFDPVGG-PQFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGY  267 (328)
T ss_pred             CCceEEEECCch-HhHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEE
Confidence            479999999998 678899999999999999987643 2344554457888888853

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.10  E-value=0.035  Score=39.37  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      +++|+++||+|... ++.++++++++|+++.+|....
T Consensus       202 ~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~  237 (331)
T cd08273         202 GGVDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSS  237 (331)
T ss_pred             CCceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCC
Confidence            47999999999865 8999999999999999997754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=95.68  E-value=0.021  Score=40.97  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=30.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      +++|+++||+|.. ..+.++++++++||++.+|..
T Consensus       226 ~~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         226 GKFDVILDTVGGD-TEKWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             CCCCEEEECCChH-HHHHHHHHhccCCEEEEecCC
Confidence            4699999999986 899999999999999999864

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.28  E-value=0.027  Score=41.41  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+.+.+.++++.|++.|+++.+..
T Consensus        88 ~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~  124 (325)
T TIGR01532        88 LGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGA  124 (325)
T ss_pred             cCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCc
Confidence            4899999999999999999999999999999998743

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.05  E-value=0.054  Score=38.07  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ++++|++++|+|.. ....++++++++|+++.+|...
T Consensus       207 ~~~~d~vi~~~~~~-~~~~~~~~l~~~G~~v~~~~~~  242 (325)
T cd08271         207 GRGVDAVLDTVGGE-TAAALAPTLAFNGHLVCIQGRP  242 (325)
T ss_pred             CCCCcEEEECCCcH-hHHHHHHhhccCCEEEEEcCCC
Confidence            35799999999985 4567899999999999987543

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=94.97  E-value=0.032  Score=36.61  Aligned_cols=38  Identities=24%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .|+|+|+||+|.-.+.+.+-..++.|.+-|+++.+.++
T Consensus        86 ~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~~  123 (149)
T smart00846       86 LGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAKD  123 (149)
T ss_pred             cCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCCC
Confidence            37899999999877777777888888899999888654

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=94.90  E-value=0.053  Score=39.16  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhcc---CCCEEEEec
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATR---AGDKVCLVG   35 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~---~gGrvv~vG   35 (100)
                      ++++|+++||+|...+...++++++   ++|+++.++
T Consensus       223 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~  259 (352)
T cd08247         223 QGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIV  259 (352)
T ss_pred             CCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEe
Confidence            4689999999998778899999999   999999764

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.76  E-value=0.063  Score=40.91  Aligned_cols=40  Identities=15%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             cccEEEEccChHHHHH-HHHHhccCCCEEEEecCCCCCccc
Q 034260            4 GIDVSFDCAGLNKTMS-TVLDATRAGDKVCLVGMGHHDMTV   43 (100)
Q Consensus         4 G~D~vie~~G~~~~~~-~al~~l~~gGrvv~vG~~~~~~~i   43 (100)
                      ++|++++|+|....++ ..++.+++|+.++.+|....++.+
T Consensus       267 ~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~  307 (425)
T PRK05476        267 LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDV  307 (425)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccCh
Confidence            6899999999988886 688999999999999988755443

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.43  E-value=0.032  Score=36.75  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=32.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||||.-.+.+.+-..++.|.+=|+++.+.++
T Consensus        88 gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~  124 (151)
T PF00044_consen   88 GVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKD  124 (151)
T ss_dssp             TESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SS
T ss_pred             cccEEEeccccceecccccccccccccceeecccccc
Confidence            6899999999988888888899999999999988764

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=94.24  E-value=0.15  Score=35.83  Aligned_cols=37  Identities=8%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             CcccEEEEcc------ChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCA------GLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~------G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      +++|+|+...      ..+..++++.+.|+|||++++.+....
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~  187 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR  187 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            3689888543      445789999999999999999876543

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.19  E-value=0.098  Score=38.76  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .|+|+||||+|...+-+.+-..+..|.+.|++..+.++
T Consensus        94 ~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~d  131 (338)
T PLN02358         94 AGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKD  131 (338)
T ss_pred             cCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCCC
Confidence            48999999999998889999999999999999977654

>cd08251 polyketide_synthase polyketide synthase

Probab=93.92  E-value=0.13  Score=35.56  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      +++|+++||++. .....++++++++|+++.+|...
T Consensus       188 ~~~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~~  222 (303)
T cd08251         188 RGVDVVINTLSG-EAIQKGLNCLAPGGRYVEIAMTA  222 (303)
T ss_pred             CCceEEEECCcH-HHHHHHHHHhccCcEEEEEeccC
Confidence            579999999985 68899999999999999998764

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=93.64  E-value=0.071  Score=39.84  Aligned_cols=37  Identities=16%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|.-.+.+.+...++.|.+=|++..+.++
T Consensus       104 gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d  140 (361)
T PTZ00434        104 GVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASG  140 (361)
T ss_pred             CCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCC
Confidence            7999999999988899999999999888889877643

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.54  E-value=0.21  Score=37.87  Aligned_cols=43  Identities=12%  Similarity=0.145  Sum_probs=34.4

Q ss_pred             cccEEEEccChHHHHHH-HHHhccCCCEEEEecCCCCCcccChHHH
Q 034260            4 GIDVSFDCAGLNKTMST-VLDATRAGDKVCLVGMGHHDMTVPLTPA   48 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~-al~~l~~gGrvv~vG~~~~~~~i~~~~l   48 (100)
                      ++|++|+|+|....++. .++.+++|+.++.+|....  +++...+
T Consensus       250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~--eId~~aL  293 (406)
T TIGR00936       250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDV--EIDVKAL  293 (406)
T ss_pred             cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCc--eeCHHHH
Confidence            57999999999988875 8899999999999998743  3554443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=93.42  E-value=0.17  Score=38.31  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+-+.+-..++.|.+.|++..+.+
T Consensus       149 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~  185 (395)
T PLN03096        149 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK  185 (395)
T ss_pred             cCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCC
Confidence            4899999999998888899999999999999998754

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=93.21  E-value=0.16  Score=37.62  Aligned_cols=36  Identities=28%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|...+-+.+-..++.|.+.|.+..+.+
T Consensus        89 gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~  124 (331)
T PRK15425         89 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  124 (331)
T ss_pred             CCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC
Confidence            799999999998888888999999999999988754

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=92.95  E-value=0.24  Score=38.03  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+||||+|...+.+.+-..+..|.+.|++..+..
T Consensus       164 ~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~~  200 (442)
T PLN02237        164 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAK  200 (442)
T ss_pred             cCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCCC
Confidence            4899999999998888899999999999999996643

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=92.92  E-value=0.2  Score=36.99  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|...+-+.+-..++.|.+.|++..+..
T Consensus        90 gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~~  125 (327)
T TIGR01534        90 GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPSK  125 (327)
T ss_pred             CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCCC
Confidence            799999999998788888889999999999987754

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=92.87  E-value=0.24  Score=36.79  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|...+.+.+-..++.|.+.|++..+..
T Consensus        90 gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~~  125 (337)
T PRK07403         90 GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAPGK  125 (337)
T ss_pred             CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCCC
Confidence            799999999998888888889999999999987643

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=92.84  E-value=0.22  Score=37.06  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      .|+|+|+||+|...+.+.+-..+..|.+.|.+..+.
T Consensus        88 ~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~  123 (343)
T PRK07729         88 LGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG  123 (343)
T ss_pred             cCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCC
Confidence            379999999999888888888899999999998664

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=92.79  E-value=0.22  Score=36.89  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=31.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      |+|+|+||+|...+.+.+-..+..|.+.|.+..+.
T Consensus        88 gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~  122 (334)
T PRK08955         88 GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV  122 (334)
T ss_pred             CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCCC
Confidence            79999999999888888999999999999998774

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=92.20  E-value=0.27  Score=36.41  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=31.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      .|+|+|+||+|...+-+.+-..++.|.+.|++..+.
T Consensus        90 ~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~  125 (336)
T PRK13535         90 LGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG  125 (336)
T ss_pred             cCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence            489999999999888888889999999999998774

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=91.91  E-value=0.28  Score=36.37  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=32.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+-+.+-..++.|.+.|.+..+.+
T Consensus        89 ~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~  125 (337)
T PTZ00023         89 NGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPK  125 (337)
T ss_pred             cCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCC
Confidence            4799999999998788888889999999999987654

>PLN02494 adenosylhomocysteinase

Probab=90.54  E-value=0.33  Score=37.60  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccEEEEccChHHHH-HHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTM-STVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~-~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .+|++++|+|....+ .+.++.+++++.++.+|.+...
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~e  346 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNE  346 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCc
Confidence            579999999987664 8899999999999999987543

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=89.30  E-value=0.55  Score=35.92  Aligned_cols=37  Identities=16%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|...+.+.+...++.|.+=|++..+.++
T Consensus       174 gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~~d  210 (421)
T PLN02272        174 GAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPSAD  210 (421)
T ss_pred             CCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCCCC
Confidence            7999999999987888888888888766667766543

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=89.26  E-value=0.81  Score=28.10  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEE
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCL   33 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~   33 (100)
                      .+|+++||++.....+-..++++.|=.+|.
T Consensus        59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt   88 (117)
T PF03447_consen   59 DIDVVVECTSSEAVAEYYEKALERGKHVVT   88 (117)
T ss_dssp             T-SEEEE-SSCHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCeEEE
Confidence            589999998887766667777776655553

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=89.15  E-value=1.1  Score=29.83  Aligned_cols=36  Identities=8%  Similarity=0.183  Sum_probs=26.7

Q ss_pred             CcccEEEE-c----cCh------------HHHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFD-C----AGL------------NKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie-~----~G~------------~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      .++|+|+. +    +|.            ...++.+.+.+++||++++.....
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            36899985 3    232            457889999999999999976443

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=87.80  E-value=0.61  Score=34.72  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+||||+|...+.+.+...++.|.+=|++..+.+
T Consensus        92 gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps~  127 (342)
T PTZ00353         92 GVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQSA  127 (342)
T ss_pred             CCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCCC
Confidence            799999999998778888888887655444544443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=85.50  E-value=2.5  Score=30.52  Aligned_cols=52  Identities=13%  Similarity=0.009  Sum_probs=38.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~G   57 (100)
                      .+|++|+|++....-+..++.+++++.++-++...+...+  .....+++++.+
T Consensus       210 ~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~  261 (296)
T PRK08306        210 KIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALL  261 (296)
T ss_pred             CCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEE
Confidence            5899999998765567788899999999988887665444  344455666663

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=85.42  E-value=1.9  Score=31.74  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLV   34 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~v   34 (100)
                      .+|+|+.+.|.....+..++.+++||++++.
T Consensus       149 ~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        149 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            4899999999877778889999999998874

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=85.38  E-value=1.5  Score=31.66  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ...+|+|+||++....-+-+...|+.|-.++++....
T Consensus        60 ~~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGA   96 (267)
T PRK13301         60 AWRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGA   96 (267)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhH
Confidence            3568999999999888888899999888888876543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=85.36  E-value=2.4  Score=28.50  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=25.3

Q ss_pred             CcccEEEEccCh---HHHHHHHHHhccCCCEEEEe
Q 034260            3 AGIDVSFDCAGL---NKTMSTVLDATRAGDKVCLV   34 (100)
Q Consensus         3 ~G~D~vie~~G~---~~~~~~al~~l~~gGrvv~v   34 (100)
                      ..+|+|+...+.   ...++.+.+.+++||++++.
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            358999986553   45788999999999999863

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=85.26  E-value=0.95  Score=33.60  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=30.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccC-CCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRA-GDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~-gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|.-..-+.+-+.+.. |.+-|+++.+.++
T Consensus        89 gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~  126 (335)
T COG0057          89 GVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD  126 (335)
T ss_pred             CccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence            689999999987777777778877 4888889988764

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=83.00  E-value=1.4  Score=27.72  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             ccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            5 IDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         5 ~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      +|++||++ .++.....++.+...|.-+++|..+
T Consensus        68 ~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG  100 (124)
T PF01113_consen   68 ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTG  100 (124)
T ss_dssp             -SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred             CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCC
Confidence            79999999 5566767777776667777777654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=81.45  E-value=2.6  Score=28.77  Aligned_cols=31  Identities=10%  Similarity=0.120  Sum_probs=24.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLV   34 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~v   34 (100)
                      .+|+++-....+...+...+.|++||++++.
T Consensus       145 ~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        145 PYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            5799876655566677888999999998874

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=81.40  E-value=1.3  Score=28.95  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             HHHHHHHHhccCCCEEEEecCCCC
Q 034260           16 KTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus        16 ~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .+++++++.+++||.++++-.++.
T Consensus        73 ~Al~~al~lL~~gG~i~iv~Y~GH   96 (140)
T PF06962_consen   73 KALEAALELLKPGGIITIVVYPGH   96 (140)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE--ST
T ss_pred             HHHHHHHHhhccCCEEEEEEeCCC
Confidence            478999999999999999988764

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=80.51  E-value=5.2  Score=23.95  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=24.5

Q ss_pred             cccEEEEccCh---HHHHHHHHHhccCCCEEEEec
Q 034260            4 GIDVSFDCAGL---NKTMSTVLDATRAGDKVCLVG   35 (100)
Q Consensus         4 G~D~vie~~G~---~~~~~~al~~l~~gGrvv~vG   35 (100)
                      .+|+++-..+.   ...++.+.+.+++||++++..
T Consensus        88 ~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        88 EPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            57888865432   347889999999999998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=80.48  E-value=2.2  Score=33.45  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             CcccEEEEcc---ChHH---HHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCA---GLNK---TMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~---G~~~---~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      +++|++|+|+   |.+.   ..++.++.+++|+.+|=++...
T Consensus       246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence            4699999999   7654   6788899999999999888654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=80.06  E-value=1.3  Score=34.35  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=31.3

Q ss_pred             cccEEEEccChHHHHH-HHHHhccCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLNKTMS-TVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~~~~~-~al~~l~~gGrvv~vG~~~   38 (100)
                      .+|+++.|+|....++ +.++.+++++.++-+|...
T Consensus       309 ~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        309 TADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence            5899999999887775 8999999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		3e-05
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		3e-04
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		5e-04

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 6   DVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +V+ DC+G  K ++  ++ TR G  + LVGMG   +TVPL  A AR
Sbjct: 242 NVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +G   +V+ +C G   ++   + ATR+G  + LVG+G    TVPL  AA R
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIR 289

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +G   +V+ +C G   ++   + ATR+G  + LVG+G    TVPL  AA R
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 289

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	3e-12
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	4e-12
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	4e-12
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	7e-11
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-10
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-10
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-10
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-08
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	6e-08
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-07
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	8e-07
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-06
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	8e-06
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-05
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-05
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	4e-05
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	5e-05
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	7e-05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-04
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	3e-04

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +G   +V+ DC+G  K ++  ++ TR G  + LVGMG   +TVPL  A AR
Sbjct: 237 IGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAR 287

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 13/51 (25%), Positives = 29/51 (56%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
            G    V+ +C G+  +++  + A + G KV ++G+G +++ +P   A+ R
Sbjct: 249 GGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVR 299

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 59.5 bits (145), Expect = 4e-12
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
           +G   +V+ +C G   ++   + ATR+G  + LVG+G    TVPL  AA R
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 289

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 55.7 bits (135), Expect = 7e-11
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
            G G+DV  + +G  K +   L A     +V L+G+    +T+        
Sbjct: 233 DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIF 283

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTP 47
                 +  + AG+ +T+   ++      ++ LVG  H D+ +    
Sbjct: 226 ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSAT 272

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 9/48 (18%), Positives = 20/48 (41%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPA 48
            G+G++V  + +G    +   L A   G +  ++G+    +   L   
Sbjct: 228 TGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGE 275

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAA 50
           +  G+DV  +CAG+ +T+       +AG  V ++G+      V + P   
Sbjct: 250 VPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDI 299

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAAR 51
            G G D   +  G ++ +    +  R G    + G+      VP       
Sbjct: 264 HGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWL 314

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 8/54 (14%), Positives = 17/54 (31%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLI 54
           +   +D  ++  G  K     + A        L+G+           A  R ++
Sbjct: 239 VYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMV 292

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTP 47
             G++ + +  G  + +   +DA     K+ +VG      T     
Sbjct: 256 DGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDV 301

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 9/44 (20%), Positives = 13/44 (29%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL 45
           G G    FD  G   T+ T          + +VG+         
Sbjct: 237 GQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVG 280

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRA---GDKVCLVGMGHHDMTVPLTP 47
            G G  +  +  G+ + +   ++       G    +  +   D  +PLT 
Sbjct: 279 NGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTG 328

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGD-KVCLVGMGHHDMTVPLTP 47
             G+D + +CAG  +TM   L +T  G     ++G+   +  +PL P
Sbjct: 259 NGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDP 305

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL 45
             G+D   D     KT+S    A     K  +VG+   D+    
Sbjct: 238 SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHA 281

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL 45
           G G  ++ D  G  +T   +         + LVGM    +++  
Sbjct: 236 GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEA 279

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 4   GIDVSFDCAGLNKTMSTVLDATRAGD-KVCLVGMGHHDMTVPLTP 47
           G+D SF+C G  K M   L+A   G     +VG+      +   P
Sbjct: 260 GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRP 304

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL 45
           G G++V+ D  G   T+           ++ +VG G  ++  P 
Sbjct: 252 GRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG-GELRFPT 294

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 4   GIDVSFDCAGLNKTMSTVLDATRAGD-KVCLVGMGHHDMTVPLTP 47
           G+D SF+  G   TM T L   +       +VG+      + + P
Sbjct: 261 GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP 305

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 4   GIDVSFDCAGLNKT-MSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIY 55
             DV  D  G +   +  V+        + L G      +VPL     + +++
Sbjct: 246 KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFS-TSGSVPLDYKTLQEIVH 297

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 2   GAGIDVSFDCAGLNKTMSTVLDATRAGD-KVCLVGMGHHDMTVP 44
             G+D S DCAG  +T+   +D T  G     +VG    +MT+P
Sbjct: 263 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIP 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.28
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.25
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.24
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.23
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.22
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.18
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.17
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.15
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.15
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.13
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.11
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.09
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.09
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.08
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.08
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.07
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.05
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.05
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.05
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.04
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.04
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.03
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.99
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	98.98
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	98.98
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.98
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.96
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	98.96
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	98.94
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.93
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.92
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	98.91
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	98.9
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.89
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	98.88
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	98.87
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	98.86
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.85
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.84
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	98.82
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.82
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.82
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	98.79
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	98.79
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	98.77
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.75
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.75
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	98.75
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.72
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.72
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.71
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	98.7
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.68
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.66
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	98.65
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.52
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.5
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.49
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	98.4
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	98.34
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.23
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.15
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	98.09
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.98
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	97.76
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.48
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.48
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.34
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.04
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.32
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.31
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.18
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.04
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	91.15
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	91.12
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.72
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	90.71
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	89.43
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	88.17
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	88.1
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	87.82
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	87.78
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	87.54
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	87.32
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	87.04
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	86.15
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	85.84
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	85.5
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	85.32
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	84.99
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	84.86
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	84.84
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	84.79
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	84.73
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	84.1
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	83.99
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	83.97
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	83.57
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	83.23
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	82.06
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	81.03
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	80.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	80.49
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	80.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	80.06

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.28  E-value=1.9e-11  Score=87.97  Aligned_cols=87  Identities=21%  Similarity=0.422  Sum_probs=69.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      |+|+|++|||+|.+.++++++++++++|+++++|....+.+++...++.|++++.|      ++.+...+.+.+.+++++
T Consensus       250 g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~l~~~g  323 (363)
T 3m6i_A          250 GIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQF------QYRYCNTWPRAIRLVENG  323 (363)
T ss_dssp             SCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEE------CCSCSSCHHHHHHHHHTT
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEE------ccCCHHHHHHHHHHHHhC
Confidence            46899999999998899999999999999999999887777888899999999995      444433344667788887


Q ss_pred             CC--cceeeeeceee
Q 034260           82 TP--KLIQATLFDLF   94 (100)
Q Consensus        82 ~~--~~i~~~~~~~~   94 (100)
                      ..  +.+.+..++|+
T Consensus       324 ~i~~~~~i~~~~~l~  338 (363)
T 3m6i_A          324 LVDLTRLVTHRFPLE  338 (363)
T ss_dssp             SSCCGGGEEEEEEGG
T ss_pred             CCChHHceeeeeeHH
Confidence            53  44445677775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.25  E-value=2.8e-11  Score=86.59  Aligned_cols=87  Identities=15%  Similarity=-0.006  Sum_probs=68.4

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      |+++|++|||+|.+.++++++++++++|+++.+|....+.++++..++.|++++.|      ++.++++++ +.+.++++
T Consensus       236 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~  309 (344)
T 2h6e_A          236 GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLG------SNYGSLNDLEDVVRLSES  309 (344)
T ss_dssp             TCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHT
T ss_pred             CCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEE------EecCCHHHHHHHHHHHHc
Confidence            34799999999998899999999999999999998876677888888999999995      444445555 56778888


Q ss_pred             CCCcceeeeeceeee
Q 034260           81 QTPKLIQATLFDLFF   95 (100)
Q Consensus        81 ~~~~~i~~~~~~~~~   95 (100)
                      +..+... +.++|+.
T Consensus       310 g~i~~~i-~~~~l~~  323 (344)
T 2h6e_A          310 GKIKPYI-IKVPLDD  323 (344)
T ss_dssp             TSSCCCE-EEECC--
T ss_pred             CCCCcce-EEEeHHH
Confidence            7655444 6778764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.24  E-value=5e-11  Score=85.51  Aligned_cols=87  Identities=31%  Similarity=0.431  Sum_probs=68.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      |+++|++|||+|.+.++++++++++++|+++.+|....+.++++..++.|++++.|      ++.+..++.+.+.+++++
T Consensus       238 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~l~~~g  311 (352)
T 1e3j_A          238 GDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKS------VFRYCNDYPIALEMVASG  311 (352)
T ss_dssp             SSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEE------CCSCSSCHHHHHHHHHTT
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEE------eccchHHHHHHHHHHHcC
Confidence            46899999999998899999999999999999998766667888889999999995      444433344667788877


Q ss_pred             C--Ccceeeeeceee
Q 034260           82 T--PKLIQATLFDLF   94 (100)
Q Consensus        82 ~--~~~i~~~~~~~~   94 (100)
                      .  .+.+.++.+||+
T Consensus       312 ~i~~~~~i~~~~~l~  326 (352)
T 1e3j_A          312 RCNVKQLVTHSFKLE  326 (352)
T ss_dssp             SCCCGGGEEEEEEGG
T ss_pred             CCChHHheeEEecHH
Confidence            5  333444677775

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.23  E-value=3.2e-11  Score=87.36  Aligned_cols=86  Identities=17%  Similarity=0.190  Sum_probs=69.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      +|+|++|||+|.+.++++++++++++|+++++|....  +.+++...++.|++++.|      ++.++.++.+.+.++++
T Consensus       252 gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~l~~~  325 (370)
T 4ej6_A          252 GGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLG------SFINPFVHRRAADLVAT  325 (370)
T ss_dssp             TCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEE------CCSCTTCHHHHHHHHHT
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEE------eccChHHHHHHHHHHHc
Confidence            3899999999988899999999999999999998765  567888999999999995      44444444566788888


Q ss_pred             CCC--cceeeeeceee
Q 034260           81 QTP--KLIQATLFDLF   94 (100)
Q Consensus        81 ~~~--~~i~~~~~~~~   94 (100)
                      +..  +.+.+..++|+
T Consensus       326 g~i~~~~~i~~~~~l~  341 (370)
T 4ej6_A          326 GAIEIDRMISRRISLD  341 (370)
T ss_dssp             TCSCCGGGEEEEECGG
T ss_pred             CCCChhHcEEEEEEHH
Confidence            753  44455777775

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.22  E-value=7.5e-11  Score=84.76  Aligned_cols=87  Identities=26%  Similarity=0.367  Sum_probs=68.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQT   82 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~~   82 (100)
                      +|+|++|||+|.+.++++++++++++|+++.+|....+.++++..++.|++++.|      ++.+..++.+.+.+++++.
T Consensus       241 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~l~~~g~  314 (356)
T 1pl8_A          241 CKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKG------VFRYCNTWPVAISMLASKS  314 (356)
T ss_dssp             SCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEE------CCSCSSCHHHHHHHHHTTS
T ss_pred             CCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEE------ecccHHHHHHHHHHHHcCC
Confidence            4799999999998899999999999999999998766677888889999999995      4444333446677888775


Q ss_pred             --Ccceeeeeceeee
Q 034260           83 --PKLIQATLFDLFF   95 (100)
Q Consensus        83 --~~~i~~~~~~~~~   95 (100)
                        .+.+.++.++|+.
T Consensus       315 i~~~~~i~~~~~l~~  329 (356)
T 1pl8_A          315 VNVKPLVTHRFPLEK  329 (356)
T ss_dssp             CCCGGGEEEEEEGGG
T ss_pred             CChHHheEEEecHHH
Confidence              3344456777753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.18  E-value=5.3e-11  Score=84.84  Aligned_cols=92  Identities=11%  Similarity=0.069  Sum_probs=67.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc---cChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT---VPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~---i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      ++|+|+++||+|.+.++++++++++++|+++++|....+..   .+...++.|++++.|++..... .+..+++ +.+++
T Consensus       227 ~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~-~~~~~~~~~~~~l  305 (346)
T 4a2c_A          227 LRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSS-PWPGQEWETASRL  305 (346)
T ss_dssp             GCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCS-STTCHHHHHHHHH
T ss_pred             cCCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccC-cchHHHHHHHHHH
Confidence            35799999999999999999999999999999999876543   3556788999999986542111 1223444 55677


Q ss_pred             HhcCC--Ccceeeeeceee
Q 034260           78 ISGQT--PKLIQATLFDLF   94 (100)
Q Consensus        78 l~~~~--~~~i~~~~~~~~   94 (100)
                      ++++.  .+.+.+++++|+
T Consensus       306 ~~~g~l~~~~lI~~~~~l~  324 (346)
T 4a2c_A          306 LTERKLSLEPLIAHRGSFE  324 (346)
T ss_dssp             HHTTCSCCGGGEEEEECHH
T ss_pred             HHcCCCCCCccEeEEEeHH
Confidence            87774  344444667765

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.18  E-value=6.1e-11  Score=84.55  Aligned_cols=86  Identities=14%  Similarity=0.117  Sum_probs=72.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      |.|+|+++||+|.+.++++++++++++|+++++|.+....+++...++.|++++.|      ++.+++.++ +.++++++
T Consensus       230 g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g------s~~~~~~~~~~~~~l~~~  303 (348)
T 4eez_A          230 GLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAG------SLVGTRLDLAEAFQFGAE  303 (348)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEE------CCSCCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEE------EecCCHHHHHHHHHHHHc
Confidence            45899999999999999999999999999999999888788899999999999995      544555555 66778888


Q ss_pred             CCCcceeeeeceee
Q 034260           81 QTPKLIQATLFDLF   94 (100)
Q Consensus        81 ~~~~~i~~~~~~~~   94 (100)
                      +..+.+. +.++|+
T Consensus       304 g~i~p~~-~~~~l~  316 (348)
T 4eez_A          304 GKVKPIV-ATRKLE  316 (348)
T ss_dssp             TSCCCCE-EEECGG
T ss_pred             CCCEEEE-EEEeHH
Confidence            8877776 456765

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.17  E-value=5.8e-11  Score=84.89  Aligned_cols=88  Identities=14%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccCh-HHHHhcCcEEEeEeeceeeeee-chhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL-TPAAARYLIYGFLFFFFLVLGY-SVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~-~~~~~-~~i~~l   78 (100)
                      |+|+|++|||+|.+.++++++++++++|+++.+|....+.++++ ..++.|++++.|      ++.+ .++++ +.+.++
T Consensus       229 ~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~~l~  302 (343)
T 2dq4_A          229 GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFG------IAGRRLWQTWMQGTALV  302 (343)
T ss_dssp             SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEE------CCSCCTTHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEE------eecCCCHHHHHHHHHHH
Confidence            45899999999998899999999999999999998766677888 788899999996      3322 33444 667788


Q ss_pred             hcCC--Ccceeeeeceeee
Q 034260           79 SGQT--PKLIQATLFDLFF   95 (100)
Q Consensus        79 ~~~~--~~~i~~~~~~~~~   95 (100)
                      +++.  .+.+.++.++|+.
T Consensus       303 ~~g~~~~~~~i~~~~~l~~  321 (343)
T 2dq4_A          303 YSGRVDLSPLLTHRLPLSR  321 (343)
T ss_dssp             HHTSSCCGGGEEEEEEGGG
T ss_pred             HcCCCChHHheeEEecHHH
Confidence            8775  4455456777753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.15  E-value=5.5e-11  Score=84.99  Aligned_cols=85  Identities=14%  Similarity=0.083  Sum_probs=68.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      |+|+|++|||+|.+.++++++++++++|+++++|.... +.+++. .++.|++++.|      +..++++++ +.+.+++
T Consensus       237 g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  309 (345)
T 3jv7_A          237 GQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVT------PYWGTRSELMEVVALAR  309 (345)
T ss_dssp             GGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEEC------CCSCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEE------EecCCHHHHHHHHHHHH
Confidence            35899999999998899999999999999999998876 667775 77899999995      444445555 6677888


Q ss_pred             cCCCcceeeeeceee
Q 034260           80 GQTPKLIQATLFDLF   94 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~   94 (100)
                      ++..+.+. +.++|+
T Consensus       310 ~g~l~~~~-~~~~l~  323 (345)
T 3jv7_A          310 AGRLDIHT-ETFTLD  323 (345)
T ss_dssp             TTCCCCCE-EEECST
T ss_pred             cCCCceEE-EEEcHH
Confidence            88877766 577765

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.15  E-value=5.7e-11  Score=85.43  Aligned_cols=86  Identities=12%  Similarity=0.045  Sum_probs=67.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHH----HhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPA----AARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l----~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      |+|++|||+|.+.++++++++++++|+++.+|... .+.++++..+    +.|++++.|      ++.++++++ +.+.+
T Consensus       242 g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l  315 (357)
T 2b5w_A          242 QMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVG------SVNSHVEHFEAATVT  315 (357)
T ss_dssp             CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEE------CCCCCHHHHHHHHHH
T ss_pred             CCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEE------eccCCHHHHHHHHHH
Confidence            79999999999889999999999999999999887 5667888878    899999995      444444555 66778


Q ss_pred             HhcC--C-Ccceeeeeceeee
Q 034260           78 ISGQ--T-PKLIQATLFDLFF   95 (100)
Q Consensus        78 l~~~--~-~~~i~~~~~~~~~   95 (100)
                      ++++  . .+.+.++.++|+-
T Consensus       316 ~~~g~~~~~~~~i~~~~~l~~  336 (357)
T 2b5w_A          316 FTKLPKWFLEDLVTGVHPLSE  336 (357)
T ss_dssp             HHHSCHHHHHHHEEEEEEGGG
T ss_pred             HHhCchhhhhhhcceeecHHH
Confidence            8887  5 3444456777753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.13  E-value=3.4e-11  Score=87.38  Aligned_cols=88  Identities=13%  Similarity=0.124  Sum_probs=67.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-C-CcccChHH-HHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-H-DMTVPLTP-AAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~-~~~i~~~~-l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      |+|+|++|||+|.+.++++++++++++|+++.+|... . +.++++.. ++.|++++.|      ++.+.++++ +.+.+
T Consensus       265 g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l  338 (380)
T 1vj0_A          265 GRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKG------IWVSDTSHFVKTVSI  338 (380)
T ss_dssp             TSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEE------CCCCCHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEE------eecCCHHHHHHHHHH
Confidence            3479999999998889999999999999999999876 5 66788887 8899999996      433344555 55677


Q ss_pred             Hhc--CCCcceeeeeceeee
Q 034260           78 ISG--QTPKLIQATLFDLFF   95 (100)
Q Consensus        78 l~~--~~~~~i~~~~~~~~~   95 (100)
                      +++  +..+.+.+..++|+-
T Consensus       339 ~~~~~g~l~~~i~~~~~l~~  358 (380)
T 1vj0_A          339 TSRNYQLLSKLITHRLPLKE  358 (380)
T ss_dssp             HHTCHHHHGGGCCEEEEGGG
T ss_pred             HHhhcCCeeeEEEEEEeHHH
Confidence            877  643444446777753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.13  E-value=1.4e-10  Score=83.06  Aligned_cols=87  Identities=17%  Similarity=0.206  Sum_probs=67.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccCh-HHHHhcCcEEEeEeeceeeeeec-hhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPL-TPAAARYLIYGFLFFFFLVLGYS-VIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~~-~~~~-~~i~~l   78 (100)
                      |+++|++|||+|.+.++++++++++++|+++.+|....+.++++ ..++.|++++.|+      +... ++++ +.+.++
T Consensus       234 g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~------~~~~~~~~~~~~~~l~  307 (348)
T 2d8a_A          234 GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGI------TGRHLWETWYTVSRLL  307 (348)
T ss_dssp             TSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEEC------CCCCSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEe------cCCCcHHHHHHHHHHH
Confidence            35799999999998899999999999999999998876677888 7888999999963      3322 4444 667788


Q ss_pred             hcCC--Ccceeeeece-ee
Q 034260           79 SGQT--PKLIQATLFD-LF   94 (100)
Q Consensus        79 ~~~~--~~~i~~~~~~-~~   94 (100)
                      +++.  .+.+.++.+| |+
T Consensus       308 ~~g~i~~~~~i~~~~~gl~  326 (348)
T 2d8a_A          308 QSGKLNLDPIITHKYKGFD  326 (348)
T ss_dssp             HHTCCCCTTTEEEEEESST
T ss_pred             HcCCCChHHhheeeCCCHH
Confidence            7775  3444446777 64

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.12  E-value=1.8e-10  Score=83.24  Aligned_cols=88  Identities=24%  Similarity=0.278  Sum_probs=65.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      |+|++|||+|.+.++++++++++++ |+++++|....+.++++..++.++ ++.|+++  +.+. ..+++ +.+.+++++
T Consensus       265 g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~--~~~~-~~~~~~~~~~l~~~g  340 (376)
T 1e3i_A          265 GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFF--GGWK-SVDSVPNLVSDYKNK  340 (376)
T ss_dssp             CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSG--GGCC-HHHHHHHHHHHHHTT
T ss_pred             CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEec--CCCC-cHHHHHHHHHHHHcC
Confidence            7999999999988999999999999 999999996556677888888888 9996432  1111 23444 556788777


Q ss_pred             CCc--ceeeeeceeee
Q 034260           82 TPK--LIQATLFDLFF   95 (100)
Q Consensus        82 ~~~--~i~~~~~~~~~   95 (100)
                      ..+  .+.++.++|+.
T Consensus       341 ~i~~~~~i~~~~~l~~  356 (376)
T 1e3i_A          341 KFDLDLLVTHALPFES  356 (376)
T ss_dssp             SSCGGGGEEEEEEGGG
T ss_pred             CCCcHHhEeeeecHHH
Confidence            532  34446777753

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.11  E-value=3.4e-10  Score=82.70  Aligned_cols=87  Identities=13%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCcccEEEEccChH-HHHHHHHHhc----cCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeec-hhhH-HH
Q 034260            2 GAGIDVSFDCAGLN-KTMSTVLDAT----RAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYS-VIYF-RK   74 (100)
Q Consensus         2 G~G~D~vie~~G~~-~~~~~al~~l----~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~-~~~~-~~   74 (100)
                      |+|+|++|||+|.+ .+++.+++++    +++|+++++|....+.+++...++.|++++.|      ++.+. +.++ +.
T Consensus       280 g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~  353 (404)
T 3ip1_A          280 GLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVG------SQGHSGHGTFPRV  353 (404)
T ss_dssp             TCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEE------CCCCCSTTHHHHH
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEE------ecCCCchHHHHHH
Confidence            45899999999997 4778888888    99999999999887788999999999999996      43322 3444 66


Q ss_pred             HHHHhcC-CCcceeeeeceee
Q 034260           75 MLYISGQ-TPKLIQATLFDLF   94 (100)
Q Consensus        75 i~~l~~~-~~~~i~~~~~~~~   94 (100)
                      +.+++++ .++.+.+..++|+
T Consensus       354 ~~ll~~gl~~~~~i~~~~~l~  374 (404)
T 3ip1_A          354 ISLMASGMDMTKIISKTVSME  374 (404)
T ss_dssp             HHHHHTTCCGGGGCCEEECGG
T ss_pred             HHHHHcCCChhheEEEEeeHH
Confidence            7888888 3334455777775

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.09  E-value=8.8e-11  Score=84.69  Aligned_cols=87  Identities=11%  Similarity=0.113  Sum_probs=68.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      |+|+|++|||+| ..++++++++++++|+++++|.... +.+++...++.|++++.|      +..++++++ +.+.+++
T Consensus       255 g~g~D~vid~~g-~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  327 (363)
T 3uog_A          255 DRGADHILEIAG-GAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQG------ISVGHRRALEDLVGAVD  327 (363)
T ss_dssp             TCCEEEEEEETT-SSCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEE------CCCCCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCC-hHHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEE------EecCCHHHHHHHHHHHH
Confidence            358999999999 4689999999999999999998875 367888889999999995      444445555 5567777


Q ss_pred             cCCCcceeeeeceeee
Q 034260           80 GQTPKLIQATLFDLFF   95 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~~   95 (100)
                      ++..+.+.+.+++|+.
T Consensus       328 ~g~l~~~i~~~~~l~~  343 (363)
T 3uog_A          328 RLGLKPVIDMRYKFTE  343 (363)
T ss_dssp             HHTCCCCEEEEEEGGG
T ss_pred             cCCCccceeeEEcHHH
Confidence            7765555557788753

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.09  E-value=2.5e-10  Score=81.40  Aligned_cols=84  Identities=14%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|+++||+|.+.++++++++++++|+++.+|....+.+++...++.|++++.|      ++.++++++ +.+.+++++.
T Consensus       232 ~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g~  305 (340)
T 3s2e_A          232 GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRG------SIVGTRSDLQESLDFAAHGD  305 (340)
T ss_dssp             SEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEE------EecCCHHHHHHHHHHHHhCC
Confidence            799999999999999999999999999999999887777888889999999995      444555555 6677888887


Q ss_pred             Ccceeeeeceee
Q 034260           83 PKLIQATLFDLF   94 (100)
Q Consensus        83 ~~~i~~~~~~~~   94 (100)
                      .+.+.+ .++|+
T Consensus       306 l~~~~~-~~~l~  316 (340)
T 3s2e_A          306 VKATVS-TAKLD  316 (340)
T ss_dssp             CCCCEE-EECGG
T ss_pred             CCceEE-EEeHH
Confidence            666654 45765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.08  E-value=2.3e-10  Score=82.53  Aligned_cols=87  Identities=9%  Similarity=0.022  Sum_probs=65.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      |+|++|||+|.+.++++++++++++|+++++|....  +.++++..++.|++++.|+++  +... .++++ +.+.++++
T Consensus       258 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~-~~~~~~~~~~l~~~  334 (371)
T 1f8f_A          258 GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVE--GSGS-PKKFIPELVRLYQQ  334 (371)
T ss_dssp             CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSG--GGSC-HHHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCC--CCCc-hHHHHHHHHHHHHc
Confidence            799999999998899999999999999999998763  457888888899999997442  1111 13444 55678887


Q ss_pred             CCCc---ceeeeeceeee
Q 034260           81 QTPK---LIQATLFDLFF   95 (100)
Q Consensus        81 ~~~~---~i~~~~~~~~~   95 (100)
                      +..+   +|+ . ++|+.
T Consensus       335 g~l~~~~~i~-~-~~l~~  350 (371)
T 1f8f_A          335 GKFPFDQLVK-F-YAFDE  350 (371)
T ss_dssp             TSCCGGGGEE-E-EEGGG
T ss_pred             CCCCccccee-E-ecHHH
Confidence            7533   455 4 77753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.08  E-value=2.6e-10  Score=81.44  Aligned_cols=85  Identities=14%  Similarity=0.135  Sum_probs=68.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|....+.++++..++.|++++.|      +..++++++ +.+.+++++.
T Consensus       230 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g~  303 (339)
T 1rjw_A          230 GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG------SIVGTRKDLQEALQFAAEGK  303 (339)
T ss_dssp             SEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHTTS
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEE------eccCCHHHHHHHHHHHHcCC
Confidence            799999999998899999999999999999998876677888888899999995      444444545 6677888876


Q ss_pred             Ccceeeeeceeee
Q 034260           83 PKLIQATLFDLFF   95 (100)
Q Consensus        83 ~~~i~~~~~~~~~   95 (100)
                      .+.+. +.++|+.
T Consensus       304 l~~~~-~~~~l~~  315 (339)
T 1rjw_A          304 VKTII-EVQPLEK  315 (339)
T ss_dssp             CCCCE-EEEEGGG
T ss_pred             CCccE-EEEcHHH
Confidence            66554 4677753

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.07  E-value=3.4e-10  Score=83.92  Aligned_cols=87  Identities=13%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechh-hHHHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVI-YFRKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~-~~~~i~~l~   79 (100)
                      |+|+|++|||+|. .++++++++++++|+++++|.... +.+++...++.+++++.|      ++.++.. ..+.+.+++
T Consensus       312 g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  384 (456)
T 3krt_A          312 GEDIDIVFEHPGR-ETFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIG------SHFANYREAWEANRLIA  384 (456)
T ss_dssp             SCCEEEEEECSCH-HHHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEE------eccCCHHHHHHHHHHHH
Confidence            4689999999998 799999999999999999998765 456788889999999995      4444334 446778888


Q ss_pred             cCCCcceeeeeceeee
Q 034260           80 GQTPKLIQATLFDLFF   95 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~~   95 (100)
                      ++..+.+.+..++|+-
T Consensus       385 ~g~l~~~i~~~~~l~~  400 (456)
T 3krt_A          385 KGRIHPTLSKVYSLED  400 (456)
T ss_dssp             TTSSCCCEEEEEEGGG
T ss_pred             cCCcccceeEEEcHHH
Confidence            8876656667788753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.05  E-value=7.8e-10  Score=79.72  Aligned_cols=88  Identities=19%  Similarity=0.201  Sum_probs=64.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +++|++|||+|.+.++++++++++++ |+++++|....  +.++++..++.++ ++.|+++  +.+. .++++ +.+.++
T Consensus       259 ~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~--~~~~-~~~~~~~~~~l~  334 (373)
T 2fzw_A          259 GGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAF--GGWK-SVESVPKLVSEY  334 (373)
T ss_dssp             SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG--GGCC-HHHHHHHHHHHH
T ss_pred             CCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEecc--CCCC-cHHHHHHHHHHH
Confidence            37999999999988999999999999 99999998764  4567777788888 9996432  2111 13444 556788


Q ss_pred             hcCCCc--ceeeeeceee
Q 034260           79 SGQTPK--LIQATLFDLF   94 (100)
Q Consensus        79 ~~~~~~--~i~~~~~~~~   94 (100)
                      +++..+  .+.++.++|+
T Consensus       335 ~~g~l~~~~~i~~~~~l~  352 (373)
T 2fzw_A          335 MSKKIKVDEFVTHNLSFD  352 (373)
T ss_dssp             HTTSSCSGGGEEEEEEGG
T ss_pred             HcCCCCchheEeEEeeHH
Confidence            777532  3334677775

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.05  E-value=7.8e-10  Score=80.02  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      +|+|++|||+|.+.++++++++++++ |+++++|....  ..+++...++. ++++.|+++  +.+. .++++ +.+.++
T Consensus       262 gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~~~--~~~~-~~~~~~~~~~l~  337 (378)
T 3uko_A          262 GGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKGTAF--GGFK-SRTQVPWLVEKY  337 (378)
T ss_dssp             SCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEECSG--GGCC-HHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEEEEe--cCCC-chHHHHHHHHHH
Confidence            38999999999999999999999996 99999998764  34566666654 899997543  2222 23444 556788


Q ss_pred             hcCC--Ccceeeeeceeee
Q 034260           79 SGQT--PKLIQATLFDLFF   95 (100)
Q Consensus        79 ~~~~--~~~i~~~~~~~~~   95 (100)
                      +++.  ++.+.+++++|+.
T Consensus       338 ~~g~l~~~~~i~~~~~l~~  356 (378)
T 3uko_A          338 MNKEIKVDEYITHNLTLGE  356 (378)
T ss_dssp             HTTSSCCGGGEEEEEEGGG
T ss_pred             HcCCCChhHheeeEeeHHH
Confidence            8774  3334456777753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.05  E-value=8e-10  Score=79.77  Aligned_cols=88  Identities=18%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      ++|++|||+|.+.++++++++++++ |+++++|.... +.++++..++.++ ++.|+++  +.+. .++++ +.+.++++
T Consensus       262 g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~--~~~~-~~~~~~~~~~l~~~  337 (374)
T 1cdo_A          262 GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMF--GGFK-GKDGVPKMVKAYLD  337 (374)
T ss_dssp             CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSG--GGCC-HHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEec--CCCC-cHHHHHHHHHHHHc
Confidence            7999999999988999999999999 99999998764 5667877888888 9996432  1111 23444 55677877


Q ss_pred             CCCc--ceeeeeceeee
Q 034260           81 QTPK--LIQATLFDLFF   95 (100)
Q Consensus        81 ~~~~--~i~~~~~~~~~   95 (100)
                      +..+  .+.++.++|+.
T Consensus       338 g~l~~~~~i~~~~~l~~  354 (374)
T 1cdo_A          338 KKVKLDEFITHRMPLES  354 (374)
T ss_dssp             TSSCCGGGEEEEEEGGG
T ss_pred             CCCChHHheeeEecHHH
Confidence            7532  33446777753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.04  E-value=9e-10  Score=79.50  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=64.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++|++|||+|.+.++++++++++++ |+++++|....  +.++++..++.++ ++.|+++  +.+. .++++ +.+.+++
T Consensus       261 g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~--~~~~-~~~~~~~~~~l~~  336 (374)
T 2jhf_A          261 GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIF--GGFK-SKDSVPKLVADFM  336 (374)
T ss_dssp             CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSG--GGCC-HHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEecc--CCCC-hHHHHHHHHHHHH
Confidence            7999999999988999999999999 99999998764  4567777888888 9996442  1111 13444 5567887


Q ss_pred             cCCC--cceeeeeceee
Q 034260           80 GQTP--KLIQATLFDLF   94 (100)
Q Consensus        80 ~~~~--~~i~~~~~~~~   94 (100)
                      ++..  +.+.++.++|+
T Consensus       337 ~g~i~~~~~i~~~~~l~  353 (374)
T 2jhf_A          337 AKKFALDPLITHVLPFE  353 (374)
T ss_dssp             TTSSCCGGGEEEEEEGG
T ss_pred             cCCCCchhheEEEEeHH
Confidence            7753  23344677775

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.04  E-value=3e-10  Score=81.32  Aligned_cols=86  Identities=17%  Similarity=0.045  Sum_probs=68.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|++|||+|.+.++++++++++++|+++.+|... .+ ++++..++.|++++.|      +..++++++ +.+.++++
T Consensus       239 ~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~  311 (347)
T 1jvb_A          239 KGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVG------SLVGNQSDFLGIMRLAEA  311 (347)
T ss_dssp             SCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEE------CCSCCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEE------EeccCHHHHHHHHHHHHc
Confidence            379999999999889999999999999999999876 55 7888888899999995      444445555 55678888


Q ss_pred             CCCcceeeeeceeee
Q 034260           81 QTPKLIQATLFDLFF   95 (100)
Q Consensus        81 ~~~~~i~~~~~~~~~   95 (100)
                      +..+.+.++.++|+.
T Consensus       312 g~l~~~i~~~~~l~~  326 (347)
T 1jvb_A          312 GKVKPMITKTMKLEE  326 (347)
T ss_dssp             TSSCCCCEEEEEGGG
T ss_pred             CCCCceEEEEEcHHH
Confidence            765555556777753

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.03  E-value=1.3e-09  Score=80.47  Aligned_cols=87  Identities=14%  Similarity=0.006  Sum_probs=68.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechh-hHHHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVI-YFRKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~-~~~~i~~l~   79 (100)
                      |+|+|++|||+|. .++++++++++++|+++.+|.... ..+++...++.+++++.|      ++.++.. ..+.+.+++
T Consensus       304 g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  376 (447)
T 4a0s_A          304 GREPDIVFEHTGR-VTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVG------SHGANHEEQQATNRLFE  376 (447)
T ss_dssp             SSCCSEEEECSCH-HHHHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCc-hHHHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEe------cCCCCHHHHHHHHHHHH
Confidence            4689999999998 589999999999999999998765 456788888999999995      4444444 346678888


Q ss_pred             cCCCcceeeeeceeee
Q 034260           80 GQTPKLIQATLFDLFF   95 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~~   95 (100)
                      ++..+.+.+.+++|+.
T Consensus       377 ~g~l~~~i~~~~~l~~  392 (447)
T 4a0s_A          377 SGAVVPAMSAVYPLAE  392 (447)
T ss_dssp             TTSSCCCEEEEEEGGG
T ss_pred             cCCcccceeEEEcHHH
Confidence            8876666667788753

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.02  E-value=1.3e-09  Score=78.57  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=64.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      |+|++|||+|.+.++++++++++++ |+++.+|....  +.++++..++.++ ++.|+++  +.  +.++++ +.+.+++
T Consensus       261 g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~--~~--~~~~~~~~~~~l~~  335 (373)
T 1p0f_A          261 GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVF--GG--FKGEEVSRLVDDYM  335 (373)
T ss_dssp             CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSG--GG--CCGGGHHHHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeecc--CC--cCHHHHHHHHHHHH
Confidence            7999999999988999999999999 99999998764  4567777787888 9996432  11  223444 6677888


Q ss_pred             cCCCc--ceeeeeceeee
Q 034260           80 GQTPK--LIQATLFDLFF   95 (100)
Q Consensus        80 ~~~~~--~i~~~~~~~~~   95 (100)
                      ++..+  .+.++.++|+-
T Consensus       336 ~g~i~~~~~i~~~~~l~~  353 (373)
T 1p0f_A          336 KKKINVNFLVSTKLTLDQ  353 (373)
T ss_dssp             TTSSCGGGGEEEEECGGG
T ss_pred             cCCCCchheEEEEeeHHH
Confidence            77532  33346777753

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.00  E-value=2.5e-10  Score=81.75  Aligned_cols=84  Identities=8%  Similarity=-0.123  Sum_probs=67.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcc-cChHHHH-hcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMT-VPLTPAA-ARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~-i~~~~l~-~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|... .+.+ ++...++ .|++++.|      ++.++.+++ +.+.+++
T Consensus       234 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  307 (348)
T 3two_A          234 ELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG------SLIGGIKETQEMVDFSI  307 (348)
T ss_dssp             CEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEE------CCSCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEE------EecCCHHHHHHHHHHHH
Confidence            68999999999878999999999999999999987 6665 7877887 99999995      444545555 5567888


Q ss_pred             cCCCcceeeeeceee
Q 034260           80 GQTPKLIQATLFDLF   94 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~   94 (100)
                      ++..+.+. +.++|+
T Consensus       308 ~g~l~~~~-~~~~l~  321 (348)
T 3two_A          308 KHNIYPEI-DLILGK  321 (348)
T ss_dssp             HTTCCCCE-EEECGG
T ss_pred             hCCCCceE-EEEEHH
Confidence            88666554 577765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.99  E-value=7.1e-10  Score=78.90  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=67.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-----HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-----RKM   75 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-----~~i   75 (100)
                      |+|+|+++||+|. .++++++++++++|+++.+|....+ .+++...+..|++++.|+..  +++...++++     +.+
T Consensus       215 ~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  291 (334)
T 3qwb_A          215 GKGVDASFDSVGK-DTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQL--YGYIADPEEWKYYSDEFF  291 (334)
T ss_dssp             TSCEEEEEECCGG-GGHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCG--GGGSCSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCh-HHHHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEe--ccccCCHHHHHHHHHHHH
Confidence            4579999999998 6899999999999999999987754 36788888899999996442  2222233332     345


Q ss_pred             HHHhcCCCcceeeeeceee
Q 034260           76 LYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        76 ~~l~~~~~~~i~~~~~~~~   94 (100)
                      .+++++..+...+..++++
T Consensus       292 ~l~~~g~l~~~i~~~~~l~  310 (334)
T 3qwb_A          292 GLVNSKKLNIKIYKTYPLR  310 (334)
T ss_dssp             HHHHTTSSCCCEEEEEEGG
T ss_pred             HHHHCCCccCceeeEEcHH
Confidence            6777776555555777775

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=98.98  E-value=3.5e-10  Score=82.40  Aligned_cols=86  Identities=13%  Similarity=0.145  Sum_probs=64.7

Q ss_pred             CcccEEEEccChH--------------HHHHHHHHhccCCCEEEEecCCC-------------CCcccChHHHHhcCcEE
Q 034260            3 AGIDVSFDCAGLN--------------KTMSTVLDATRAGDKVCLVGMGH-------------HDMTVPLTPAAARYLIY   55 (100)
Q Consensus         3 ~G~D~vie~~G~~--------------~~~~~al~~l~~gGrvv~vG~~~-------------~~~~i~~~~l~~k~~~i   55 (100)
                      +|+|++|||+|.+              .++++++++++++||++++|...             .+.++++..++.|++++
T Consensus       253 ~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i  332 (398)
T 2dph_A          253 PEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRI  332 (398)
T ss_dssp             SCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEE
T ss_pred             CCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEE
Confidence            4799999999975              37999999999999999999872             23467777888999999


Q ss_pred             EeEeeceeeeeechhhH-HHHHHHhcCCCc--c--eeeeeceee
Q 034260           56 GFLFFFFLVLGYSVIYF-RKMLYISGQTPK--L--IQATLFDLF   94 (100)
Q Consensus        56 ~Gs~~~~g~~~~~~~~~-~~i~~l~~~~~~--~--i~~~~~~~~   94 (100)
                      .|      +.....+++ +.+.+++++..+  .  +.++.++|+
T Consensus       333 ~g------~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~  370 (398)
T 2dph_A          333 MT------GMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLD  370 (398)
T ss_dssp             EC------SSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECST
T ss_pred             EE------eccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHH
Confidence            85      433334555 567788887665  2  334677775

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=98.98  E-value=6.7e-10  Score=79.95  Aligned_cols=83  Identities=14%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CCcccEEEEccChHH--HHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNK--TMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~--~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      |+|+|++|||+|.+.  ++++++++  ++|+++.+|....+ ++++..++.|++++.|      ++.++++++ +.+.++
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~  322 (359)
T 1h2b_A          252 GRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVISSEVSFEG------SLVGNYVELHELVTLA  322 (359)
T ss_dssp             TCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHHTTCEEEE------CCSCCHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEE------ecCCCHHHHHHHHHHH
Confidence            347999999999987  89999998  99999999987766 7888888999999995      444445555 567788


Q ss_pred             hcCCCcceeeeeceee
Q 034260           79 SGQTPKLIQATLFDLF   94 (100)
Q Consensus        79 ~~~~~~~i~~~~~~~~   94 (100)
                      .++..+.+. +.++|+
T Consensus       323 ~~g~l~~~i-~~~~l~  337 (359)
T 1h2b_A          323 LQGKVRVEV-DIHKLD  337 (359)
T ss_dssp             HTTSCCCCE-EEEEGG
T ss_pred             HcCCCcceE-EEEeHH
Confidence            877644444 667765

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.98  E-value=7.9e-10  Score=78.99  Aligned_cols=86  Identities=19%  Similarity=0.158  Sum_probs=66.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|++|||+| ..++++++++++++|+++.+|....+ .++++..++.|++++.|      +..+..+++ +.+.++++
T Consensus       234 ~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~l~~~  306 (343)
T 2eih_A          234 KGADKVVDHTG-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILG------STMASKSRLFPILRFVEE  306 (343)
T ss_dssp             TCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEE------CCSCCGGGHHHHHHHHHH
T ss_pred             CCceEEEECCC-HHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEE------ecCccHHHHHHHHHHHHc
Confidence            47999999999 67899999999999999999987654 35777888899999995      433334555 56778887


Q ss_pred             CCCcceeeeeceeee
Q 034260           81 QTPKLIQATLFDLFF   95 (100)
Q Consensus        81 ~~~~~i~~~~~~~~~   95 (100)
                      +..+.+.++.++|+-
T Consensus       307 g~l~~~i~~~~~l~~  321 (343)
T 2eih_A          307 GKLKPVVGQVLPLEA  321 (343)
T ss_dssp             TSSCCCEEEEEEGGG
T ss_pred             CCCCCceeEEeeHHH
Confidence            765555567778753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.96  E-value=1.1e-09  Score=78.28  Aligned_cols=85  Identities=11%  Similarity=-0.018  Sum_probs=67.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      ++|++||++|.+.++++++++++++|+++.+|.... +.++++..++.|++++.|      ++.++++++ +.+.+++++
T Consensus       238 ~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g  311 (347)
T 2hcy_A          238 GAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVG------SYVGNRADTREALDFFARG  311 (347)
T ss_dssp             CEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEE------CCCCCHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEE------ccCCCHHHHHHHHHHHHhC
Confidence            799999999998899999999999999999998763 467788888899999995      444444555 567788888


Q ss_pred             CCcceeeeeceeee
Q 034260           82 TPKLIQATLFDLFF   95 (100)
Q Consensus        82 ~~~~i~~~~~~~~~   95 (100)
                      ..+.+. +.++|+.
T Consensus       312 ~l~~~~-~~~~l~~  324 (347)
T 2hcy_A          312 LVKSPI-KVVGLST  324 (347)
T ss_dssp             SCCCCE-EEEEGGG
T ss_pred             CCccce-EEEcHHH
Confidence            666554 4677753

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.96  E-value=4e-10  Score=81.59  Aligned_cols=85  Identities=5%  Similarity=-0.057  Sum_probs=61.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc-ccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM-TVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~-~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      +++|++|||+|.+.++++++++++++|+++.+|....+. +++...++.|++++.|      ++.+..+++ +.+.++++
T Consensus       256 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~  329 (369)
T 1uuf_A          256 KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG------SMIGGIPETQEMLDFCAE  329 (369)
T ss_dssp             TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEE------CCSCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEE------eecCCHHHHHHHHHHHHh
Confidence            379999999998778999999999999999999876655 6788888899999995      443444545 55677777


Q ss_pred             CCCcceeeeeceee
Q 034260           81 QTPKLIQATLFDLF   94 (100)
Q Consensus        81 ~~~~~i~~~~~~~~   94 (100)
                      +..+...+ .++|+
T Consensus       330 g~i~~~i~-~~~l~  342 (369)
T 1uuf_A          330 HGIVADIE-MIRAD  342 (369)
T ss_dssp             HTCCCCEE-EECGG
T ss_pred             CCCCcceE-EEcHH
Confidence            65444443 57765

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=98.94  E-value=4.6e-10  Score=80.75  Aligned_cols=83  Identities=10%  Similarity=0.058  Sum_probs=64.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc-cChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT-VPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~-i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|....+.+ ++.. ++.|++++.|      ++.+..+++ +.+.+++++
T Consensus       244 g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g  316 (357)
T 2cf5_A          244 SLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITG------SFIGSMKETEEMLEFCKEK  316 (357)
T ss_dssp             TEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEE------CCSCCHHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEE------EccCCHHHHHHHHHHHHcC
Confidence            799999999987789999999999999999998765554 6666 8899999995      444444555 566788877


Q ss_pred             CCcceeeeeceee
Q 034260           82 TPKLIQATLFDLF   94 (100)
Q Consensus        82 ~~~~i~~~~~~~~   94 (100)
                      ..+... +.+||+
T Consensus       317 ~l~~~~-~~~~l~  328 (357)
T 2cf5_A          317 GLSSII-EVVKMD  328 (357)
T ss_dssp             TCCCCE-EEEEGG
T ss_pred             CCCCce-EEEeHH
Confidence            654444 477765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.93  E-value=7.9e-10  Score=79.83  Aligned_cols=84  Identities=11%  Similarity=0.004  Sum_probs=66.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      ++|++|||+|.+.++++++++++++|+++.+|....+.+++...++.|++++.|      ++.+..+++ +.+.+++++.
T Consensus       251 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~~g~  324 (366)
T 1yqd_A          251 TLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAG------SGIGGMKETQEMIDFAAKHN  324 (366)
T ss_dssp             CEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEE------CCSCCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEE------ecCCCHHHHHHHHHHHHcCC
Confidence            799999999987778999999999999999998876667888889999999995      443444444 6677787776


Q ss_pred             Ccceeeeeceee
Q 034260           83 PKLIQATLFDLF   94 (100)
Q Consensus        83 ~~~i~~~~~~~~   94 (100)
                      .+... +.+||+
T Consensus       325 l~~~~-~~~~l~  335 (366)
T 1yqd_A          325 ITADI-EVISTD  335 (366)
T ss_dssp             CCCCE-EEECGG
T ss_pred             CCCce-EEEcHH
Confidence            44444 467765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.92  E-value=6e-10  Score=80.30  Aligned_cols=86  Identities=10%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             CcccEEEEccChHHHH-HHHHHhccCCCEEEEecCCCCC-cccChHH---HHhcCcEEEeEeeceeeeeechhhH-HHHH
Q 034260            3 AGIDVSFDCAGLNKTM-STVLDATRAGDKVCLVGMGHHD-MTVPLTP---AAARYLIYGFLFFFFLVLGYSVIYF-RKML   76 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~-~~al~~l~~gGrvv~vG~~~~~-~~i~~~~---l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~   76 (100)
                      +++|++|||+|.+.++ ++++++++++|+++.+|....+ .+++...   ++.|++++.|      +..+.++++ +.+.
T Consensus       245 ~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~  318 (366)
T 2cdc_A          245 GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIG------LVNGQKPHFQQAVV  318 (366)
T ss_dssp             CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEE------CCCCCHHHHHHHHH
T ss_pred             CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEE------ecCCCHHHHHHHHH
Confidence            4799999999997788 9999999999999999987654 6778777   8899999995      444445555 5567


Q ss_pred             HHhcCC------Ccceeeeeceee
Q 034260           77 YISGQT------PKLIQATLFDLF   94 (100)
Q Consensus        77 ~l~~~~------~~~i~~~~~~~~   94 (100)
                      +++++.      .+.+.+++++|+
T Consensus       319 l~~~g~i~~~~~~~~~i~~~~~l~  342 (366)
T 2cdc_A          319 HLASWKTLYPKAAKMLITKTVSIN  342 (366)
T ss_dssp             HHHHHHHHSHHHHTTSEEEEEETT
T ss_pred             HHHcCCCCcccchhhcEEEEEcHH
Confidence            777765      445445677775

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=98.91  E-value=1.1e-09  Score=78.55  Aligned_cols=87  Identities=13%  Similarity=0.082  Sum_probs=61.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc--cChHH--HHhcCcEEEeEeeceeeeee-chhhH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT--VPLTP--AAARYLIYGFLFFFFLVLGY-SVIYF-RKM   75 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~--i~~~~--l~~k~~~i~Gs~~~~g~~~~-~~~~~-~~i   75 (100)
                      |+|+|++|||+|.+.++++++++++++||++.+|....+.+  ++...  +..+++++.|      +..+ .++++ +.+
T Consensus       233 g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~  306 (352)
T 3fpc_A          233 GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHG------GLCPGGRLRMERLI  306 (352)
T ss_dssp             TCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEE------BCCCCHHHHHHHHH
T ss_pred             CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEE------eeccCchhHHHHHH
Confidence            45899999999998899999999999999999998765433  33222  3468999985      3332 23444 567


Q ss_pred             HHHhcCCC--cceeeeece-ee
Q 034260           76 LYISGQTP--KLIQATLFD-LF   94 (100)
Q Consensus        76 ~~l~~~~~--~~i~~~~~~-~~   94 (100)
                      .+++++..  +.+.+..++ |+
T Consensus       307 ~l~~~g~i~~~~~i~~~~~gl~  328 (352)
T 3fpc_A          307 DLVFYKRVDPSKLVTHVFRGFD  328 (352)
T ss_dssp             HHHHTTSCCGGGGEEEEEESTT
T ss_pred             HHHHcCCCChhHhheeeCCCHH
Confidence            78888753  333446666 54

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=98.90  E-value=3.4e-09  Score=77.05  Aligned_cols=88  Identities=14%  Similarity=0.175  Sum_probs=64.0

Q ss_pred             CCcccEEEEccChH---------------HHHHHHHHhccCCCEEEEecCCC--C-----------CcccChHHHHhcCc
Q 034260            2 GAGIDVSFDCAGLN---------------KTMSTVLDATRAGDKVCLVGMGH--H-----------DMTVPLTPAAARYL   53 (100)
Q Consensus         2 G~G~D~vie~~G~~---------------~~~~~al~~l~~gGrvv~vG~~~--~-----------~~~i~~~~l~~k~~   53 (100)
                      |+|+|++|||+|.+               .++++++++++++|+++++|...  .           ..+++...++.|++
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSH  331 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhccc
Confidence            35899999999975               38999999999999999999762  1           23566777889999


Q ss_pred             EEEeEeeceeeeeechhhH-HHHHHHhcCCCc---ceeeeeceeee
Q 034260           54 IYGFLFFFFLVLGYSVIYF-RKMLYISGQTPK---LIQATLFDLFF   95 (100)
Q Consensus        54 ~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~~~---~i~~~~~~~~~   95 (100)
                      ++.|      +.....++. +.+.++.++..+   .+.+++++|+-
T Consensus       332 ~~~g------~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~  371 (398)
T 1kol_A          332 SFHT------GQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDD  371 (398)
T ss_dssp             EEEE------SSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGG
T ss_pred             EEEe------cccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHH
Confidence            9985      332223444 456788887655   34456777753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.89  E-value=1.7e-09  Score=77.48  Aligned_cols=89  Identities=7%  Similarity=-0.133  Sum_probs=61.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccCh-HHHHhcCcEEEeEeeceeeeee-c----hhhH-HH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPL-TPAAARYLIYGFLFFFFLVLGY-S----VIYF-RK   74 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~-~----~~~~-~~   74 (100)
                      +|+|++|||+|.+ ..++++++++++|+++.+|.... +.+++. ..++.|++++.|++.  +.+.. .    .+++ +.
T Consensus       232 ~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~~~~~  308 (349)
T 3pi7_A          232 EQPRIFLDAVTGP-LASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWL--SEWMRQFKERRGPAILEA  308 (349)
T ss_dssp             HCCCEEEESSCHH-HHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCH--HHHHHHTHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCh-hHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEe--hhhhhhCcHHHHHHHHHH
Confidence            4799999999986 46899999999999999997654 566787 889999999996432  11100 0    1223 22


Q ss_pred             HHHHhcCCCcceeeeeceee
Q 034260           75 MLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        75 i~~l~~~~~~~i~~~~~~~~   94 (100)
                      +.+++++..+.+.+.+++|+
T Consensus       309 ~~l~~~g~l~~~i~~~~~l~  328 (349)
T 3pi7_A          309 QKRFSDGRWSTDVTAVVPLA  328 (349)
T ss_dssp             -CTTTTSSCCC-CCEEEEHH
T ss_pred             HHHHHcCCcccccceEEcHH
Confidence            44666665555555777765

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=98.88  E-value=7.5e-09  Score=74.27  Aligned_cols=80  Identities=9%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeee-ec----hhhH-HH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLG-YS----VIYF-RK   74 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~-~~----~~~~-~~   74 (100)
                      |+|+|++|||+|.+... +++++++++|+++.+|.... +.+++...++.|++++.|++.  +.+. ..    .+++ +.
T Consensus       243 ~~g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~  319 (364)
T 1gu7_A          243 GGEAKLALNCVGGKSST-GIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWV--TELLKNNKELKTSTLNQI  319 (364)
T ss_dssp             TCCEEEEEESSCHHHHH-HHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCH--HHHHTTCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCchhHH-HHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEch--hHhcccCHHHHHHHHHHH
Confidence            35799999999987655 89999999999999998653 566788888899999996432  1110 00    2334 45


Q ss_pred             HHHHhcCCCc
Q 034260           75 MLYISGQTPK   84 (100)
Q Consensus        75 i~~l~~~~~~   84 (100)
                      +.+++++..+
T Consensus       320 ~~l~~~g~l~  329 (364)
T 1gu7_A          320 IAWYEEGKLT  329 (364)
T ss_dssp             HHHHHHTCCC
T ss_pred             HHHHHcCCcc
Confidence            6777777533

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=98.87  E-value=5.3e-10  Score=80.44  Aligned_cols=83  Identities=12%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             cccEEEEccCh--HHHHHHHHHhccCCCEEEEecCCCCCc-ccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            4 GIDVSFDCAGL--NKTMSTVLDATRAGDKVCLVGMGHHDM-TVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         4 G~D~vie~~G~--~~~~~~al~~l~~gGrvv~vG~~~~~~-~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      ++|++|||+|.  +.++++++++++++|+++.+|.... . +++...++.|++++.|      ++.++++++ +.+.+++
T Consensus       243 ~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g------~~~~~~~~~~~~~~l~~  315 (360)
T 1piw_A          243 TFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISY------SALGSIKELNQLLKLVS  315 (360)
T ss_dssp             CEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEE------CCCCCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEE------EecCCHHHHHHHHHHHH
Confidence            79999999998  7789999999999999999998766 5 5777778899999995      444444555 6677888


Q ss_pred             cCCCcceeeeeceee
Q 034260           80 GQTPKLIQATLFDLF   94 (100)
Q Consensus        80 ~~~~~~i~~~~~~~~   94 (100)
                      ++..+... ++++|+
T Consensus       316 ~g~l~~~i-~~~~l~  329 (360)
T 1piw_A          316 EKDIKIWV-ETLPVG  329 (360)
T ss_dssp             HTTCCCCE-EEEESS
T ss_pred             hCCCcceE-EEEecc
Confidence            77544444 567765

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=98.86  E-value=1.3e-09  Score=77.28  Aligned_cols=55  Identities=16%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|++|||+|. +++++++++++++||++++|.... +.+++...++.|++++.|+
T Consensus       216 ~~~d~vid~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  271 (330)
T 1tt7_A          216 QQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI  271 (330)
T ss_dssp             CCEEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred             CCccEEEECCcH-HHHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEE
Confidence            479999999998 589999999999999999998764 4567777888999999964

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.85  E-value=5e-09  Score=74.61  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=64.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC------CcccChHHHHhcCcEEEeEeeceeeeee-chhhH-HH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH------DMTVPLTPAAARYLIYGFLFFFFLVLGY-SVIYF-RK   74 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~------~~~i~~~~l~~k~~~i~Gs~~~~g~~~~-~~~~~-~~   74 (100)
                      +++|++|||+|. .++++++++++++|+++++|....      +..++...++.|++++.|++.  +.+.. ..+.+ +.
T Consensus       224 ~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~  300 (345)
T 2j3h_A          224 NGIDIYFENVGG-KMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVV--SDFYDKYSKFLEFV  300 (345)
T ss_dssp             TCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCG--GGGGGGHHHHHHHH
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeee--hhhhhhHHHHHHHH
Confidence            479999999998 689999999999999999997643      345677788899999996331  11100 01223 55


Q ss_pred             HHHHhcCCCcceeeeeceee
Q 034260           75 MLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        75 i~~l~~~~~~~i~~~~~~~~   94 (100)
                      +.+++++..+.+.+..++|+
T Consensus       301 ~~l~~~g~i~~~~~~~~~l~  320 (345)
T 2j3h_A          301 LPHIREGKITYVEDVADGLE  320 (345)
T ss_dssp             HHHHHTTSSCCCEEEEESGG
T ss_pred             HHHHHCCCCcCcccccCCHH
Confidence            67888887777776677765

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.84  E-value=3.2e-09  Score=75.30  Aligned_cols=91  Identities=16%  Similarity=0.067  Sum_probs=65.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc-ccChHHHHhc-CcEEEeEeeceeeeeechhhH-----HH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM-TVPLTPAAAR-YLIYGFLFFFFLVLGYSVIYF-----RK   74 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~-~i~~~~l~~k-~~~i~Gs~~~~g~~~~~~~~~-----~~   74 (100)
                      |+++|+++||+|. .++++++++++++|+++.+|....+. +++...+..+ ++++.+...  +++..+++++     +.
T Consensus       207 ~~g~Dvvid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  283 (325)
T 3jyn_A          207 GKKCPVVYDGVGQ-DTWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTL--GSYANNAQNLQTMADEL  283 (325)
T ss_dssp             TCCEEEEEESSCG-GGHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCH--HHHSCSTTHHHHHHHHH
T ss_pred             CCCceEEEECCCh-HHHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeee--eeecCCHHHHHHHHHHH
Confidence            3589999999998 68999999999999999999887653 6788888777 678764321  2333333333     34


Q ss_pred             HHHHhcCCCcceeeeeceeee
Q 034260           75 MLYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        75 i~~l~~~~~~~i~~~~~~~~~   95 (100)
                      +.+++++..+...++.+||+.
T Consensus       284 ~~l~~~g~l~~~i~~~~~l~~  304 (325)
T 3jyn_A          284 FDMLASGKLKVDGIEQYALKD  304 (325)
T ss_dssp             HHHHHTTSSCCCCCEEEEGGG
T ss_pred             HHHHHCCCeeCccccEEcHHH
Confidence            567777765554567787753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=98.82  E-value=1.1e-09  Score=77.43  Aligned_cols=86  Identities=15%  Similarity=0.034  Sum_probs=63.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeech----hhH-HHHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSV----IYF-RKML   76 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~----~~~-~~i~   76 (100)
                      +++|++|||+|.+ ++++++++++++|+++.+|..... .+++...++.|++++.|++.    ....+    +.+ +.+.
T Consensus       210 ~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~  284 (324)
T 3nx4_A          210 QLWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDS----VMTPPARRAEAWARLVK  284 (324)
T ss_dssp             CCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCS----TTCCHHHHHHHHHHHHH
T ss_pred             CCccEEEECCCcH-HHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEec----cccChHHHHHHHHHHHH
Confidence            4799999999985 899999999999999999988653 56788888999999996432    11111    223 3345


Q ss_pred             HHhcCCCcceeeeeceee
Q 034260           77 YISGQTPKLIQATLFDLF   94 (100)
Q Consensus        77 ~l~~~~~~~i~~~~~~~~   94 (100)
                      +++++..+.+ ++.++|+
T Consensus       285 l~~~g~l~~~-~~~~~l~  301 (324)
T 3nx4_A          285 DLPESFYAQA-ATEITLA  301 (324)
T ss_dssp             HSCHHHHHHH-EEEEEGG
T ss_pred             HHHcCCCCCC-ceeEeHH
Confidence            5555555555 6777765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.82  E-value=5.4e-09  Score=75.04  Aligned_cols=89  Identities=12%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cc-cChHHHHhcCcEEEeEeeceeeeeechhh--------
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MT-VPLTPAAARYLIYGFLFFFFLVLGYSVIY--------   71 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~-i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~--------   71 (100)
                      |+++|++|||+|.+ .+++++++++++|+++.+|..... .+ +++..++.|++++.|+..  +.  ....+        
T Consensus       233 ~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~--~~~~~~~~~~~~~  307 (353)
T 4dup_A          233 GQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTM--RP--RTAEEKRAIRDDL  307 (353)
T ss_dssp             SSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCS--TT--SCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCHH-HHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEec--cc--cchhhhHHHHHHH
Confidence            45899999999984 899999999999999999987653 34 788889999999996432  11  11110        


Q ss_pred             H-HHHHHHhcCCCcceeeeeceeee
Q 034260           72 F-RKMLYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        72 ~-~~i~~l~~~~~~~i~~~~~~~~~   95 (100)
                      + +.+.+++++..+.+.+.+++|+.
T Consensus       308 ~~~~~~l~~~g~l~~~i~~~~~l~~  332 (353)
T 4dup_A          308 LSEVWPLLEAGTVAPVIHKVFAFED  332 (353)
T ss_dssp             HHHTHHHHHHTSSCCCEEEEEEGGG
T ss_pred             HHHHHHHHHCCCccCCcceEEeHHH
Confidence            3 34567777765555667788753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.82  E-value=9.1e-09  Score=73.60  Aligned_cols=90  Identities=16%  Similarity=0.108  Sum_probs=63.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeee-ee----chhhH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVL-GY----SVIYF-RKM   75 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~-~~----~~~~~-~~i   75 (100)
                      |+|+|++|||+|. +++++++++++++|+++.+|...   +++...+..|++++.|++...... ..    ..+++ +.+
T Consensus       214 ~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
T 3gaz_A          214 GQGFDLVYDTLGG-PVLDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREAD  289 (343)
T ss_dssp             TSCEEEEEESSCT-HHHHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCc-HHHHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHH
Confidence            4589999999997 68999999999999999999775   456778889999999643200000 00    11334 456


Q ss_pred             HHHhcCCCcceee-eeceeee
Q 034260           76 LYISGQTPKLIQA-TLFDLFF   95 (100)
Q Consensus        76 ~~l~~~~~~~i~~-~~~~~~~   95 (100)
                      .+++++..+.+.+ ..++|+.
T Consensus       290 ~l~~~g~l~~~i~~~~~~l~~  310 (343)
T 3gaz_A          290 ALVQTGKLAPRLDPRTFSIAE  310 (343)
T ss_dssp             HHHHTTCCCCCBCSCCEETTC
T ss_pred             HHHHCCCcccCccCcEecHHH
Confidence            6788876555555 5777753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=98.79  E-value=1.6e-08  Score=72.95  Aligned_cols=55  Identities=9%  Similarity=0.106  Sum_probs=47.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+|++|||+|.+.++++++++++++|+++++|.   +.+++...+..|++++.|++
T Consensus       237 ~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~---~~~~~~~~~~~k~~~i~~~~  291 (363)
T 4dvj_A          237 LGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD---PSAFDIMLFKRKAVSIHHEL  291 (363)
T ss_dssp             SCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC---CSSCCGGGGTTTTCEEEECC
T ss_pred             CCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC---CCccchHHHhhccceEEEEE
Confidence            45899999999998899999999999999999964   34577788889999999643

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=98.79  E-value=4.4e-09  Score=75.33  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-----------------CcccChHHHHhcCcEEEeEeeceee
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-----------------DMTVPLTPAAARYLIYGFLFFFFLV   64 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-----------------~~~i~~~~l~~k~~~i~Gs~~~~g~   64 (100)
                      ++|+|++|||+|.+. .++++++++++||++++|....                 ..++++..++.+++++.|+..  +.
T Consensus       206 ~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~--~~  282 (349)
T 4a27_A          206 AEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSL--LN  282 (349)
T ss_dssp             TTCEEEEEEECC--------CTTEEEEEEEEEEC-------------------------CHHHHHHHTCEEEEECH--HH
T ss_pred             CCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEee--hh
Confidence            458999999999864 5999999999999999997641                 123667788899999996432  11


Q ss_pred             ee--e-----chhhH-HHHHHHhcCCCcceeeeeceeee
Q 034260           65 LG--Y-----SVIYF-RKMLYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        65 ~~--~-----~~~~~-~~i~~l~~~~~~~i~~~~~~~~~   95 (100)
                      +.  .     .++++ +.+.+++++..+.+.+.+++|+-
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~  321 (349)
T 4a27_A          283 LLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEE  321 (349)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGG
T ss_pred             eeccccchHHHHHHHHHHHHHHHCCCccccccceECHHH
Confidence            10  0     03344 45677888766666667788753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=98.77  E-value=1.5e-08  Score=72.45  Aligned_cols=86  Identities=7%  Similarity=0.033  Sum_probs=60.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeee-eec-------hhhH-
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVL-GYS-------VIYF-   72 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~-~~~-------~~~~-   72 (100)
                      ++++|+++||+|.+.++++++++++++|+++.+|..  +.+++...+..|++++.|++.  ... .+.       .+++ 
T Consensus       215 ~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (346)
T 3fbg_A          215 IELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF--ENDQDLNALKPKSLSFSHEFM--FARPLNQTDDMIKHHEYLE  290 (346)
T ss_dssp             CCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCC--SSCBCGGGGTTTTCEEEECCT--THHHHTTCTTTHHHHHHHH
T ss_pred             CCCccEEEECCCchHHHHHHHHHhccCCEEEEECCC--CCCCccccccccceEEEEEEE--ecccccchhhHHHHHHHHH
Confidence            458999999999988899999999999999998854  345677778889999996432  110 000       1223 


Q ss_pred             HHHHHHhcCCCcceeeeec
Q 034260           73 RKMLYISGQTPKLIQATLF   91 (100)
Q Consensus        73 ~~i~~l~~~~~~~i~~~~~   91 (100)
                      +.+.+++++..+.+.+..+
T Consensus       291 ~~~~l~~~g~l~~~i~~~~  309 (346)
T 3fbg_A          291 DITNKVEQNIYQPTTTKVI  309 (346)
T ss_dssp             HHHHHHHTTSSCCCEEEEE
T ss_pred             HHHHHHHCCCEECCcccee
Confidence            4456777776555544554

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.75  E-value=1.9e-08  Score=71.46  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=62.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-----C--CcccChHHHHhcCcEEEeEeeceeeeee-chhhH-
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-----H--DMTVPLTPAAARYLIYGFLFFFFLVLGY-SVIYF-   72 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-----~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~-~~~~~-   72 (100)
                      ++++|+++||+|. .++++++++++++|+++++|...     .  ..+++...++.|++++.|+..  +.+.. .++++ 
T Consensus       216 ~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~  292 (336)
T 4b7c_A          216 PKGIDVFFDNVGG-EILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVV--MDYAQRFPEGLK  292 (336)
T ss_dssp             TTCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCG--GGGGGGHHHHHH
T ss_pred             CCCceEEEECCCc-chHHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEh--hhhhhhhHHHHH
Confidence            4579999999997 68999999999999999999865     1  135677788999999996432  11100 11334 


Q ss_pred             HHHHHHhcCCCcceeeeeceee
Q 034260           73 RKMLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        73 ~~i~~l~~~~~~~i~~~~~~~~   94 (100)
                      +.+.+++++..+......++|+
T Consensus       293 ~~~~l~~~g~l~~~~~~~~~l~  314 (336)
T 4b7c_A          293 EMATWLAEGKLQSREDIVEGLE  314 (336)
T ss_dssp             HHHHHHHTTSSCCCEEEEECGG
T ss_pred             HHHHHHHCCCcccceeeecCHH
Confidence            4566788776444443334554

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.75  E-value=9e-09  Score=73.12  Aligned_cols=90  Identities=18%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChH-HHHhcC--cEEEeEeeceeeeeech----hhH-
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLT-PAAARY--LIYGFLFFFFLVLGYSV----IYF-   72 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~-~l~~k~--~~i~Gs~~~~g~~~~~~----~~~-   72 (100)
                      ++++|++|||+|. .++++++++++++|+++.+|.... +.+++.. .++.|+  +++.|++.   .+...+    +++ 
T Consensus       212 ~~~~d~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~---~~~~~~~~~~~~~~  287 (333)
T 1wly_A          212 GKGVDVVYDSIGK-DTLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALW---HYMSNRSEIDEGSK  287 (333)
T ss_dssp             TCCEEEEEECSCT-TTHHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGG---GGSCSHHHHHHHHH
T ss_pred             CCCCeEEEECCcH-HHHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeeh---hhccCHHHHHHHHH
Confidence            3479999999998 789999999999999999998764 4567777 788899  99987542   111122    234 


Q ss_pred             HHHHHHhcCCCcceeeeeceeee
Q 034260           73 RKMLYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        73 ~~i~~l~~~~~~~i~~~~~~~~~   95 (100)
                      +.+.++.++..+.+.++.++|+-
T Consensus       288 ~~~~l~~~g~l~~~i~~~~~l~~  310 (333)
T 1wly_A          288 CLFDAVKAGVLHSSVAKTFPLRE  310 (333)
T ss_dssp             HHHHHHHTTSCCCCEEEEEEGGG
T ss_pred             HHHHHHHCCCcCCCcceEEeHHH
Confidence            44667877765555567778753

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=98.75  E-value=4.2e-08  Score=70.38  Aligned_cols=88  Identities=10%  Similarity=0.047  Sum_probs=61.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEeeceeeee--ec----hhhH-HHH
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLFFFFLVLG--YS----VIYF-RKM   75 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~~~~g~~~--~~----~~~~-~~i   75 (100)
                      ++|++|||+|.+.+ .+++++++++|+++.+|... .+.+++...+..|++++.|++.  +.+.  ..    .+++ +.+
T Consensus       240 ~~Dvvid~~g~~~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~~~~~~~  316 (357)
T 1zsy_A          240 QPRLALNCVGGKSS-TELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWL--SQWKKDHSPDQFKELILTLC  316 (357)
T ss_dssp             CCSEEEESSCHHHH-HHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCH--HHHHHHSCHHHHHHHHHHHH
T ss_pred             CceEEEECCCcHHH-HHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEc--chhcccCCHHHHHHHHHHHH
Confidence            59999999998654 67999999999999998654 3567888888899999996432  1110  01    1223 445


Q ss_pred             HHHhcCCCcceeeeeceee
Q 034260           76 LYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        76 ~~l~~~~~~~i~~~~~~~~   94 (100)
                      .++.++..+......++|+
T Consensus       317 ~l~~~g~l~~~~~~~~~l~  335 (357)
T 1zsy_A          317 DLIRRGQLTAPACSQVPLQ  335 (357)
T ss_dssp             HHHHTTSSCCCCEEEEEGG
T ss_pred             HHHHcCCCcCccceEEcHH
Confidence            6777776544444677765

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.72  E-value=1.9e-08  Score=72.26  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=61.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccCh-HHHHhcCcEEEeEeeceeeeeechhh--------H
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPL-TPAAARYLIYGFLFFFFLVLGYSVIY--------F   72 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~-~~l~~k~~~i~Gs~~~~g~~~~~~~~--------~   72 (100)
                      +++|++|||+|.+ ++++++++++++|+++.+|.... ..++++ ..++.|++++.|++.  +.  ...++        .
T Consensus       230 ~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~--~~~~~~~~~~~~~~  304 (354)
T 2j8z_A          230 AGVNLILDCIGGS-YWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLL--RS--RDNKYKQMLVNAFT  304 (354)
T ss_dssp             SCEEEEEESSCGG-GHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCS--TT--CCHHHHHHHHHHHH
T ss_pred             CCceEEEECCCch-HHHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEc--cc--ccccccHHHHHHHH
Confidence            4799999999986 89999999999999999998764 356787 788899999996432  11  11111        1


Q ss_pred             -HHHHHHhcC---CCcceeeeeceee
Q 034260           73 -RKMLYISGQ---TPKLIQATLFDLF   94 (100)
Q Consensus        73 -~~i~~l~~~---~~~~i~~~~~~~~   94 (100)
                       +.+.+++++   ..+.+.+..++|+
T Consensus       305 ~~~~~l~~~g~~~~l~~~i~~~~~l~  330 (354)
T 2j8z_A          305 EQILPHFSTEGPQRLLPVLDRIYPVT  330 (354)
T ss_dssp             HHTGGGGTC---CCCCCCEEEEEEGG
T ss_pred             HHHHHHHHcCCCccccCccceEEcHH
Confidence             234566666   5555555777765

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.72  E-value=9.3e-09  Score=73.52  Aligned_cols=88  Identities=11%  Similarity=0.017  Sum_probs=56.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeee--ec---hhhH-HHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLG--YS---VIYF-RKM   75 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~--~~---~~~~-~~i   75 (100)
                      +|+|++|||+|.+ .+++++++++++|+++++|....+ .+++...++.|++++.|+.+  +.+.  .+   .+++ +.+
T Consensus       226 ~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~~~~~~~  302 (342)
T 4eye_A          226 AGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAW--GEFLRTHADYLYETQAGLE  302 (342)
T ss_dssp             SCEEEEEESCC---CHHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCH--HHHHHHCTTHHHHHHHHHH
T ss_pred             CCceEEEECCchh-HHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEeh--hhhhhcCHHHHHHHHHHHH
Confidence            4899999999984 899999999999999999987653 46777778899999997442  1110  00   1223 445


Q ss_pred             HHHhcCCCcceeeeeceee
Q 034260           76 LYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        76 ~~l~~~~~~~i~~~~~~~~   94 (100)
                      .+++++ .+.+.+.+++|+
T Consensus       303 ~l~~~g-l~~~i~~~~~l~  320 (342)
T 4eye_A          303 KLVAEG-MRPPVSARIPLS  320 (342)
T ss_dssp             HHHHTT-CCCCEEEEEEGG
T ss_pred             HHHHcC-CCCCcceEEeHH
Confidence            677777 555555777775

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.71  E-value=8.1e-09  Score=72.49  Aligned_cols=88  Identities=14%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHH---H
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKML---Y   77 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~---~   77 (100)
                      +++|++|| +|. .++++++++++++|+++.+|..... .++++..++.|++++.|+.+  +.+...++++ +.+.   +
T Consensus       188 ~~~d~vid-~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~l  263 (302)
T 1iz0_A          188 GGLDLVLE-VRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWL--TPLLREGALVEEALGFLLP  263 (302)
T ss_dssp             TSEEEEEE-CSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCH--HHHTTCHHHHHHHHHHHGG
T ss_pred             cCceEEEE-CCH-HHHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEec--cchhhhHHHHHHHHhhhHH
Confidence            37999999 998 6899999999999999999987653 35777788899999996432  1111223444 5566   7


Q ss_pred             HhcCCCcceeeeeceee
Q 034260           78 ISGQTPKLIQATLFDLF   94 (100)
Q Consensus        78 l~~~~~~~i~~~~~~~~   94 (100)
                      +.++..+.+.++.++|+
T Consensus       264 ~~~g~l~~~i~~~~~l~  280 (302)
T 1iz0_A          264 RLGRELRPVVGPVFPFA  280 (302)
T ss_dssp             GBTTTBCCCEEEEEEGG
T ss_pred             HHcCCcccccceEEcHH
Confidence            77776555555777775

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=98.70  E-value=6.7e-09  Score=73.57  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=47.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs   58 (100)
                      +++|++|||+|. +++++++++++++|+++++|.... +.++++..++.|++++.|+
T Consensus       215 ~~~d~vid~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~  270 (328)
T 1xa0_A          215 QRWAAAVDPVGG-RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  270 (328)
T ss_dssp             CCEEEEEECSTT-TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             CcccEEEECCcH-HHHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEE
Confidence            479999999998 589999999999999999998764 4567777888999999964

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.68  E-value=4.4e-08  Score=70.36  Aligned_cols=87  Identities=15%  Similarity=0.071  Sum_probs=61.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHH----H
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKML----Y   77 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~----~   77 (100)
                      +++|++|||+|.+ ++++++++++++|+++.+|.. .+.++++..++.|++++.|+..    ...+++++ +.+.    +
T Consensus       238 ~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~~i~g~~~----~~~~~~~~~~~~~~l~~~  311 (351)
T 1yb5_A          238 KGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTL----FSSTKEEFQQYAAALQAG  311 (351)
T ss_dssp             TCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCG----GGCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCChH-HHHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCcEEEEEEe----ecCCHHHHHHHHHHHHHH
Confidence            4799999999974 789999999999999999965 3456778888899999996431    12233333 3222    4


Q ss_pred             HhcCCCcceeeeeceeee
Q 034260           78 ISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        78 l~~~~~~~i~~~~~~~~~   95 (100)
                      +.++..+.+.+..+||+-
T Consensus       312 ~~~g~l~~~i~~~~~l~~  329 (351)
T 1yb5_A          312 MEIGWLKPVIGSQYPLEK  329 (351)
T ss_dssp             HHHTCCCCCEEEEEEGGG
T ss_pred             HHCCCccCccceEEcHHH
Confidence            445544444556777753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.66  E-value=4.2e-08  Score=69.43  Aligned_cols=89  Identities=16%  Similarity=0.048  Sum_probs=63.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhc-CcEEEeEeeceeeeeec----hhhH-HHH
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAAR-YLIYGFLFFFFLVLGYS----VIYF-RKM   75 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k-~~~i~Gs~~~~g~~~~~----~~~~-~~i   75 (100)
                      +++|++|||+| ..++++++++++++|+++.+|....+ .+++...++.| ++++.++..  +++...    .+++ +.+
T Consensus       208 ~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  284 (327)
T 1qor_A          208 KKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSL--QGYITTREELTEASNELF  284 (327)
T ss_dssp             CCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCH--HHHCCSHHHHHHHHHHHH
T ss_pred             CCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccch--hhhcCCHHHHHHHHHHHH
Confidence            47999999999 67899999999999999999987653 46788888888 888875221  111111    2233 456


Q ss_pred             HHHhcCCCcceee--eeceee
Q 034260           76 LYISGQTPKLIQA--TLFDLF   94 (100)
Q Consensus        76 ~~l~~~~~~~i~~--~~~~~~   94 (100)
                      .++.++..+.+.+  +.++|+
T Consensus       285 ~l~~~g~l~~~i~~~~~~~l~  305 (327)
T 1qor_A          285 SLIASGVIKVDVAEQQKYPLK  305 (327)
T ss_dssp             HHHHTTSSCCCCCGGGEEEGG
T ss_pred             HHHHCCCcccccccCcEEcHH
Confidence            7788876555555  677765

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=98.65  E-value=2.4e-08  Score=70.62  Aligned_cols=85  Identities=12%  Similarity=0.026  Sum_probs=61.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      +++|++|||+|.+.. ++++++++++|+++.+|....+.  ....+..+++++.|++     .....+++ +.+.+++++
T Consensus       214 ~g~D~v~d~~g~~~~-~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~g  285 (321)
T 3tqh_A          214 TPVDAVIDLVGGDVG-IQSIDCLKETGCIVSVPTITAGR--VIEVAKQKHRRAFGLL-----KQFNIEELHYLGKLVSED  285 (321)
T ss_dssp             SCEEEEEESSCHHHH-HHHGGGEEEEEEEEECCSTTHHH--HHHHHHHTTCEEECCC-----CCCCHHHHHHHHHHHHTT
T ss_pred             cCCCEEEECCCcHHH-HHHHHhccCCCEEEEeCCCCchh--hhhhhhhcceEEEEEe-----cCCCHHHHHHHHHHHHCC
Confidence            379999999998755 99999999999999998654322  2335678899998522     22334455 556788888


Q ss_pred             CCcceeeeeceeee
Q 034260           82 TPKLIQATLFDLFF   95 (100)
Q Consensus        82 ~~~~i~~~~~~~~~   95 (100)
                      ..+...+++++|+.
T Consensus       286 ~l~~~i~~~~~l~~  299 (321)
T 3tqh_A          286 KLRIEISRIFQLSE  299 (321)
T ss_dssp             SSCCCEEEEECGGG
T ss_pred             CcccccccEEcHHH
Confidence            76666667777753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.52  E-value=2.1e-07  Score=66.61  Aligned_cols=88  Identities=18%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccCh---------HHHHhcCcEEEeEeeceeeeee-chhhH
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPL---------TPAAARYLIYGFLFFFFLVLGY-SVIYF   72 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~---------~~l~~k~~~i~Gs~~~~g~~~~-~~~~~   72 (100)
                      ++|++|||+|. .++++++++++++||++++|.... ..+++.         ..++.|++++.|++.  +.+.. ..+++
T Consensus       230 ~~d~vi~~~G~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~  306 (357)
T 2zb4_A          230 GVDVYFDNVGG-NISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLV--LNYKDKFEPGI  306 (357)
T ss_dssp             CEEEEEESCCH-HHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCG--GGGGGGHHHHH
T ss_pred             CCCEEEECCCH-HHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeeh--hhhhHHHHHHH
Confidence            79999999997 789999999999999999998653 123332         567889999996432  11110 13334


Q ss_pred             -HHHHHHhcCCCcceeeeeceee
Q 034260           73 -RKMLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        73 -~~i~~l~~~~~~~i~~~~~~~~   94 (100)
                       +.+.++.++..+......++|+
T Consensus       307 ~~~~~l~~~g~l~~~~~~~~~l~  329 (357)
T 2zb4_A          307 LQLSQWFKEGKLKIKETVINGLE  329 (357)
T ss_dssp             HHHHHHHHTTCCCCCEEEEECGG
T ss_pred             HHHHHHHHcCCCcCccceecCHH
Confidence             5567787775443332335554

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.50  E-value=1.4e-07  Score=67.96  Aligned_cols=80  Identities=11%  Similarity=0.056  Sum_probs=55.4

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCc-----------ccChHHHHhcCcEEEeEeeceeeee-ech
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDM-----------TVPLTPAAARYLIYGFLFFFFLVLG-YSV   69 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~-----------~i~~~~l~~k~~~i~Gs~~~~g~~~-~~~   69 (100)
                      ++|+|++|||+|. .++++++++++++|+++.+|......           .+ ...++.|++++.|++.  +.+. ...
T Consensus       229 ~~g~D~vid~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~--~~~~~~~~  304 (362)
T 2c0c_A          229 PEGVDVVYESVGG-AMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFL--NHYLSKYQ  304 (362)
T ss_dssp             TTCEEEEEECSCT-HHHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCG--GGCGGGHH
T ss_pred             CCCCCEEEECCCH-HHHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEh--hhhhhhHH
Confidence            3579999999998 68999999999999999999764311           22 2567889999996432  1111 012


Q ss_pred             hhH-HHHHHHhcCCCcc
Q 034260           70 IYF-RKMLYISGQTPKL   85 (100)
Q Consensus        70 ~~~-~~i~~l~~~~~~~   85 (100)
                      +++ +.+.+++++..+.
T Consensus       305 ~~~~~~~~l~~~g~l~~  321 (362)
T 2c0c_A          305 AAMSHLLEMCVSGDLVC  321 (362)
T ss_dssp             HHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHHHHCCCeEe
Confidence            344 5567888775443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.49  E-value=4.7e-07  Score=64.12  Aligned_cols=80  Identities=15%  Similarity=0.070  Sum_probs=55.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC------Cc-ccChHHHHhcCcEEEeEeeceeeee--echhhH-
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH------DM-TVPLTPAAARYLIYGFLFFFFLVLG--YSVIYF-   72 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~------~~-~i~~~~l~~k~~~i~Gs~~~~g~~~--~~~~~~-   72 (100)
                      +++|+++||+|. .++++++++++++|+++++|....      +. ..+...++.|++++.|++.  +.+.  ...+++ 
T Consensus       213 ~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~--~~~~~~~~~~~~~  289 (333)
T 1v3u_A          213 DGYDCYFDNVGG-EFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIV--YRWQGDVREKALR  289 (333)
T ss_dssp             TCEEEEEESSCH-HHHHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCG--GGCCTHHHHHHHH
T ss_pred             CCCeEEEECCCh-HHHHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEeh--hhcchHHHHHHHH
Confidence            379999999998 579999999999999999998653      21 2366778899999996432  1110  002233 


Q ss_pred             HHHHHHhcCCCcc
Q 034260           73 RKMLYISGQTPKL   85 (100)
Q Consensus        73 ~~i~~l~~~~~~~   85 (100)
                      +.+.+++++..+.
T Consensus       290 ~~~~l~~~g~l~~  302 (333)
T 1v3u_A          290 DLMKWVLEGKIQY  302 (333)
T ss_dssp             HHHHHHHTTSSCC
T ss_pred             HHHHHHHCCCccC
Confidence            4466777775443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=98.40  E-value=1.8e-08  Score=71.09  Aligned_cols=88  Identities=10%  Similarity=0.035  Sum_probs=46.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeee-echh-------hH-
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLG-YSVI-------YF-   72 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~-~~~~-------~~-   72 (100)
                      ++|+|++|||+|.+. .++++++++++||++.+|......+++   ...+.+++++... .|++. .++.       ++ 
T Consensus       197 ~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  271 (315)
T 3goh_A          197 TQKYFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDP---AFTRTISYHEIAL-GALHDFGDRQDWQILMQQGE  271 (315)
T ss_dssp             CSCEEEEECC--------TTGGGEEEEEEEEEECCC-------------CCSEEEEECG-GGHHHHCCHHHHHHHHHHHH
T ss_pred             CCCccEEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccc---hhhhcceeeEEEe-ecccccCChhHHHHHHHHHH
Confidence            568999999999864 589999999999999998654332222   2233444432111 02222 1111       22 


Q ss_pred             HHHHHHhcCCCcceeeeeceee
Q 034260           73 RKMLYISGQTPKLIQATLFDLF   94 (100)
Q Consensus        73 ~~i~~l~~~~~~~i~~~~~~~~   94 (100)
                      +.+.+++++..+.+.+.++||+
T Consensus       272 ~~~~l~~~g~l~~~i~~~~~l~  293 (315)
T 3goh_A          272 ALLTLIAQGKMEIAAPDIFRFE  293 (315)
T ss_dssp             HHHHHHHTTSSCCCCCEEEEGG
T ss_pred             HHHHHHHCCCcccccceEecHH
Confidence            4456788876555666778875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=98.34  E-value=5.1e-07  Score=65.16  Aligned_cols=56  Identities=13%  Similarity=0.055  Sum_probs=44.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhc-cCCCEEEEecCCCC------CcccC---hHHHHhcCcEEEeE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDAT-RAGDKVCLVGMGHH------DMTVP---LTPAAARYLIYGFL   58 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l-~~gGrvv~vG~~~~------~~~i~---~~~l~~k~~~i~Gs   58 (100)
                      +++|++|||+|.+.+++++++++ +++||++.+|....      +.+.+   ...++.|++++.|+
T Consensus       230 g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~  295 (371)
T 3gqv_A          230 NNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAP  295 (371)
T ss_dssp             TCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTT
T ss_pred             CCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeecccccccccc
Confidence            45999999999989999999999 69999999996542      12222   23577899999864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.23  E-value=1.7e-07  Score=66.78  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHh-cCcEEEeEeec----eeeeeechhhH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAA-RYLIYGFLFFF----FLVLGYSVIYF-RKM   75 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~-k~~~i~Gs~~~----~g~~~~~~~~~-~~i   75 (100)
                      |+|+|++|||+|.+. ..+++++++++|+++.+|.... .+++...+.. +.+++.+....    .++.....+++ +.+
T Consensus       211 ~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (340)
T 3gms_A          211 GIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSG-IQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLI  288 (340)
T ss_dssp             TSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTS-CCCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCC-CCCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHH
Confidence            358999999999865 4566799999999999998764 2455555443 34444421100    00111112334 556


Q ss_pred             HHHhcCCCc--ceeeeeceeee
Q 034260           76 LYISGQTPK--LIQATLFDLFF   95 (100)
Q Consensus        76 ~~l~~~~~~--~i~~~~~~~~~   95 (100)
                      .+++++..+  .| ++.++|+-
T Consensus       289 ~l~~~g~l~~~~i-~~~~~l~~  309 (340)
T 3gms_A          289 RLVENEQLRFMKV-HSTYELAD  309 (340)
T ss_dssp             HHHHTTSSCCCCE-EEEEEGGG
T ss_pred             HHHHcCCCccccc-cEEEeHHH
Confidence            788887543  35 46777753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.15  E-value=2.4e-06  Score=56.19  Aligned_cols=53  Identities=17%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~G   57 (100)
                      +++|+++||+|. ..+++++++++++|+++.+|....  +.++++. .+.|++++.+
T Consensus       106 ~~~D~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~  160 (198)
T 1pqw_A          106 YGVDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASFSV  160 (198)
T ss_dssp             CCEEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEEEE
T ss_pred             CCCeEEEECCch-HHHHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEEEE
Confidence            479999999995 689999999999999999998652  2335443 3468899884

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=98.09  E-value=2.4e-06  Score=67.53  Aligned_cols=89  Identities=16%  Similarity=0.146  Sum_probs=56.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeee--chhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGY--SVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~--~~~~~-~~i~~l   78 (100)
                      |+|+|+||||+|. +.+++++++++++||++.+|........... ...+++++.+...  .....  ..+.+ +.+.++
T Consensus       410 g~GvDvVld~~gg-~~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~~~~~~~l--~~~~~~~~~~~l~~~~~l~  485 (795)
T 3slk_A          410 GRGVDVVLNSLAG-EFADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGVSYQAFDT--VEAGPQRIGEMLHELVELF  485 (795)
T ss_dssp             SSCCSEEEECCCT-TTTHHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSEEEEECCG--GGGHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCc-HHHHHHHHHhcCCCEEEEeccccccCccccc-ccCCCCEEEEeec--cccCHHHHHHHHHHHHHHH
Confidence            5689999999997 5789999999999999999976543222222 2246677663211  00000  11233 445677


Q ss_pred             hcCCCcceeeeeceee
Q 034260           79 SGQTPKLIQATLFDLF   94 (100)
Q Consensus        79 ~~~~~~~i~~~~~~~~   94 (100)
                      +++..+.+..+.||++
T Consensus       486 ~~g~l~p~~~~~~~l~  501 (795)
T 3slk_A          486 EGRVLEPLPVTAWDVR  501 (795)
T ss_dssp             HTTSCCCCCEEEEEGG
T ss_pred             HcCCcCCCcceeEcHH
Confidence            7776555566777765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.98  E-value=5.9e-06  Score=59.51  Aligned_cols=88  Identities=10%  Similarity=0.028  Sum_probs=55.8

Q ss_pred             CcccEEEEccChH-HHHHHHHHhccCCCEEEEecCCCCC-c-c--cCh------HHHHh-------cCcEEEeEeeceee
Q 034260            3 AGIDVSFDCAGLN-KTMSTVLDATRAGDKVCLVGMGHHD-M-T--VPL------TPAAA-------RYLIYGFLFFFFLV   64 (100)
Q Consensus         3 ~G~D~vie~~G~~-~~~~~al~~l~~gGrvv~vG~~~~~-~-~--i~~------~~l~~-------k~~~i~Gs~~~~g~   64 (100)
                      .|+|++|||+|.+ .++++++++++++|+++.+|..... . .  ++.      ..++.       ++..+.+     ..
T Consensus       247 ~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~  321 (375)
T 2vn8_A          247 KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRW-----AF  321 (375)
T ss_dssp             CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEE-----CC
T ss_pred             CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEE-----EE
Confidence            3799999999997 6789999999999999999976431 1 0  111      11222       4445542     11


Q ss_pred             eeechhhH-HHHHHHhcCCCcceeeeeceeee
Q 034260           65 LGYSVIYF-RKMLYISGQTPKLIQATLFDLFF   95 (100)
Q Consensus        65 ~~~~~~~~-~~i~~l~~~~~~~i~~~~~~~~~   95 (100)
                      .....+++ +.+.+++++..+.+.+..+||+-
T Consensus       322 ~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~  353 (375)
T 2vn8_A          322 FMASGPCLDDIAELVDAGKIRPVIEQTFPFSK  353 (375)
T ss_dssp             CCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGG
T ss_pred             eCCCHHHHHHHHHHHHCCCcccCcCeEECHHH
Confidence            12223444 55678888765555557788753

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=97.76  E-value=2.9e-06  Score=61.39  Aligned_cols=56  Identities=18%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhcc-----CC-----------CEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATR-----AG-----------DKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~-----~g-----------Grvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      +|+|++|||+|.+.+.++++++++     ++           |+++++|.... .++++..++.+++++.|++
T Consensus       239 ~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~-~~~~~~~~~~~~~~i~g~~  310 (379)
T 3iup_A          239 TGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDT-SPTEFNRNFGMAWGMGGWL  310 (379)
T ss_dssp             HCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEE-EEEEECCCSCSCEEEEECC
T ss_pred             CCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCC-CccccccccccceEEEEEE
Confidence            479999999999878888888885     55           55555554331 2344455678899999644

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.48  E-value=8.4e-05  Score=64.77  Aligned_cols=57  Identities=7%  Similarity=0.131  Sum_probs=43.4

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~   59 (100)
                      |+|+|+|+||+| .+.+++++++++++||++.+|..... .......+..+++++.|+.
T Consensus      1738 g~GvDvVld~~g-~~~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~ 1795 (2512)
T 2vz8_A         1738 GKGVDLVLNSLA-EEKLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGIL 1795 (2512)
T ss_dssp             SCCEEEEEECCC-HHHHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECC
T ss_pred             CCCceEEEECCC-chHHHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEee
Confidence            468999999998 57899999999999999999965321 1112234667899998643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.48  E-value=0.001  Score=47.87  Aligned_cols=54  Identities=7%  Similarity=0.013  Sum_probs=43.0

Q ss_pred             cccEEEEccChHHH------HHHHHHhccCCCEEEEecCCCC-------CcccChHHHHhcCcEEEe
Q 034260            4 GIDVSFDCAGLNKT------MSTVLDATRAGDKVCLVGMGHH-------DMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         4 G~D~vie~~G~~~~------~~~al~~l~~gGrvv~vG~~~~-------~~~i~~~~l~~k~~~i~G   57 (100)
                      ++|++|+|+|.+..      .+++++.++++|+++.+|...+       +.+++...+..+++++.|
T Consensus       230 ~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~  296 (361)
T 1pjc_A          230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYG  296 (361)
T ss_dssp             TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEEC
T ss_pred             CCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEE
Confidence            58999999998653      6788999999999999997653       345666667778899885

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.34  E-value=0.001  Score=47.98  Aligned_cols=54  Identities=9%  Similarity=-0.002  Sum_probs=33.2

Q ss_pred             cccEEEEccChHHH------HHHHHHhccCCCEEEEecCCCC-------CcccChHHHHhcCcEEEe
Q 034260            4 GIDVSFDCAGLNKT------MSTVLDATRAGDKVCLVGMGHH-------DMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         4 G~D~vie~~G~~~~------~~~al~~l~~gGrvv~vG~~~~-------~~~i~~~~l~~k~~~i~G   57 (100)
                      ++|++++|+|.+..      .+++++.++++|+++.+|...+       +.+++...+..+++++.|
T Consensus       229 ~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~  295 (369)
T 2eez_A          229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYG  295 (369)
T ss_dssp             HCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEEC
T ss_pred             CCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEe
Confidence            58999999998653      6888999999999999997653       334454455667888775

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.04  E-value=0.002  Score=46.73  Aligned_cols=72  Identities=7%  Similarity=-0.015  Sum_probs=48.6

Q ss_pred             cccEEEEcc---ChHH--H-HHHHHHhccCCCEEEEecCCC-CCc--ccChHHHHhcCcEEEeEeeceeeeeechhhHH-
Q 034260            4 GIDVSFDCA---GLNK--T-MSTVLDATRAGDKVCLVGMGH-HDM--TVPLTPAAARYLIYGFLFFFFLVLGYSVIYFR-   73 (100)
Q Consensus         4 G~D~vie~~---G~~~--~-~~~al~~l~~gGrvv~vG~~~-~~~--~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~-   73 (100)
                      ++|++|+|+   |.+.  . .+++++.++++++++-+|... +.+  +.+...+..+++++.|      +.+.+...++ 
T Consensus       257 ~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g------~~~~p~~~~~~  330 (384)
T 1l7d_A          257 KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVG------HTNVPSRVAAD  330 (384)
T ss_dssp             TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEEC------CSSGGGGGHHH
T ss_pred             CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEE------eCCCcchhHHH
Confidence            689999999   6422  2 378899999999999999753 232  2344456678999984      5455444443 


Q ss_pred             HHHHHhcC
Q 034260           74 KMLYISGQ   81 (100)
Q Consensus        74 ~i~~l~~~   81 (100)
                      ++.+++++
T Consensus       331 a~~l~~~~  338 (384)
T 1l7d_A          331 ASPLFAKN  338 (384)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55666554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.32  E-value=0.0081  Score=43.98  Aligned_cols=71  Identities=8%  Similarity=-0.002  Sum_probs=45.6

Q ss_pred             cccEEEEccChH-----HHH-HHHHHhccCCCEEEEecCCC-CCcccCh--H-HHHhcCcEEEeEeeceeeeeechhhHH
Q 034260            4 GIDVSFDCAGLN-----KTM-STVLDATRAGDKVCLVGMGH-HDMTVPL--T-PAAARYLIYGFLFFFFLVLGYSVIYFR   73 (100)
Q Consensus         4 G~D~vie~~G~~-----~~~-~~al~~l~~gGrvv~vG~~~-~~~~i~~--~-~l~~k~~~i~Gs~~~~g~~~~~~~~~~   73 (100)
                      ++|++|+|++.+     ..+ +++++.++++|+++-+|... +.++.+.  . .+..+++++.|      +.+.+....+
T Consensus       255 ~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g------~~~~p~~~~~  328 (401)
T 1x13_A          255 EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIG------YTDLPGRLPT  328 (401)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEEC------CSCTGGGSHH
T ss_pred             CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEe------eCCCcccCHH
Confidence            589999997443     223 68999999999999999753 3343322  2 25678999995      4444334433


Q ss_pred             -HHHHHhc
Q 034260           74 -KMLYISG   80 (100)
Q Consensus        74 -~i~~l~~   80 (100)
                       ++.++++
T Consensus       329 ~a~~ll~~  336 (401)
T 1x13_A          329 QSSQLYGT  336 (401)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence             4444443

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.31  E-value=0.0064  Score=44.04  Aligned_cols=55  Identities=7%  Similarity=0.105  Sum_probs=41.9

Q ss_pred             cccEEEEccChHHH------HHHHHHhccCCCEEEEecCCC-------CCcccChHHHHhcCcEEEeE
Q 034260            4 GIDVSFDCAGLNKT------MSTVLDATRAGDKVCLVGMGH-------HDMTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         4 G~D~vie~~G~~~~------~~~al~~l~~gGrvv~vG~~~-------~~~~i~~~~l~~k~~~i~Gs   58 (100)
                      ++|++++|++.+.+      .++.++.++++|+++.+|...       .+.+++...+..+++++.++
T Consensus       231 ~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            58999999998765      688999999999999999643       24445555556678887743

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.18  E-value=0.011  Score=44.56  Aligned_cols=52  Identities=8%  Similarity=0.006  Sum_probs=41.5

Q ss_pred             cccEEEEccChHHHHH-HHHHhccCCCEEEEecCCCCCcccChHHHHhcCc---EEEe
Q 034260            4 GIDVSFDCAGLNKTMS-TVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYL---IYGF   57 (100)
Q Consensus         4 G~D~vie~~G~~~~~~-~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~---~i~G   57 (100)
                      ++|++++|+|....+. +.++.++++|+++.+|...  .+++...+..+++   +|.+
T Consensus       329 ~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~--~eId~~aL~~~aL~~~~I~~  384 (494)
T 3ce6_A          329 DADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD--NEIDMAGLERSGATRVNVKP  384 (494)
T ss_dssp             GCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG--GGBCHHHHHHTTCEEEEEET
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC--CccCHHHHHHhhhccceEEE
Confidence            6899999999887676 8999999999999999865  3567777766555   5654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.04  E-value=0.12  Score=34.18  Aligned_cols=34  Identities=12%  Similarity=0.011  Sum_probs=29.8

Q ss_pred             CcccEEEEccChH-HHHHHHHHhccCCCEEEEecC
Q 034260            3 AGIDVSFDCAGLN-KTMSTVLDATRAGDKVCLVGM   36 (100)
Q Consensus         3 ~G~D~vie~~G~~-~~~~~al~~l~~gGrvv~vG~   36 (100)
                      .++|+|+...+.+ ..++++.+++++||+++++-.
T Consensus       157 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          157 GIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3689999988877 789999999999999998764

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=91.15  E-value=0.14  Score=36.88  Aligned_cols=38  Identities=21%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .|+|+|+||+|.-.+.+.|-..++.|.+-|++..+..+
T Consensus        88 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d  125 (332)
T 3pym_A           88 SNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSST  125 (332)
T ss_dssp             TTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCSS
T ss_pred             cCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCCC
Confidence            38999999999988888899999988888888777543

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=91.12  E-value=0.12  Score=37.38  Aligned_cols=37  Identities=14%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|.-.+.+.|-..++.|.+-|++..+..+
T Consensus        93 gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~d  129 (337)
T 3v1y_O           93 GAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKD  129 (337)
T ss_dssp             TCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCSS
T ss_pred             CCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCC
Confidence            7999999999988888888999989888888777654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.72  E-value=0.29  Score=34.64  Aligned_cols=35  Identities=9%  Similarity=0.050  Sum_probs=28.9

Q ss_pred             CcccEEEEccChH---HHHHHHHHhccCCCEEEEecCC
Q 034260            3 AGIDVSFDCAGLN---KTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         3 ~G~D~vie~~G~~---~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      ..+|+|+.++..+   ..++++.+.++|||++++....
T Consensus       187 ~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          187 LEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             CCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            4689999876654   6899999999999999987654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=90.71  E-value=0.15  Score=32.43  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=26.3

Q ss_pred             cccEEE-----EccChH------------HHHHHHHHhccCCCEEEEecCC
Q 034260            4 GIDVSF-----DCAGLN------------KTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         4 G~D~vi-----e~~G~~------------~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      .+|+|+     +++|..            ..++++.+.|+|||++++.-..
T Consensus        97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            589988     555543            5688899999999999987543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=89.43  E-value=0.21  Score=35.65  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .++|+|+||+|.....+.+-++++.|.+.|.+..+.++
T Consensus        90 ~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~~~  127 (335)
T 1u8f_O           90 AGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD  127 (335)
T ss_dssp             TTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS
T ss_pred             CCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCCCC
Confidence            47899999999988888888889888799999887543

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=88.17  E-value=0.32  Score=35.22  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|...+.+.+-..++.|.+=|++..+..+
T Consensus        94 gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~d  130 (346)
T 3h9e_O           94 GSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPD  130 (346)
T ss_dssp             TSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCSS
T ss_pred             cccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCC
Confidence            7999999999987888888888888766667766543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=88.10  E-value=0.26  Score=35.41  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=29.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ++|+||||+|...+.+.+-+.++.|.+-|++..+.
T Consensus        92 ~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           92 GVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             TCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            78999999999888888888888888877777665

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=87.82  E-value=0.24  Score=35.67  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=31.1

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+.+.|-..++.|.+-|++..+..
T Consensus        90 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~  126 (335)
T 3doc_A           90 ENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPAD  126 (335)
T ss_dssp             TTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCT
T ss_pred             cCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCCC
Confidence            3899999999998888888889988887777776654

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=87.78  E-value=0.25  Score=35.52  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|...+.+.+-+.++.|.++|.++.+..
T Consensus        91 gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r  126 (337)
T 1rm4_O           91 GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK  126 (337)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCEEEEECCccc
Confidence            689999999998788888888999999999987754

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=87.54  E-value=0.24  Score=36.05  Aligned_cols=36  Identities=14%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|.-.+.+.|-..++.|.+-|++..+..
T Consensus       103 gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps~  138 (359)
T 3ids_C          103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS  138 (359)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCCB
T ss_pred             CccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence            799999999998788888888988888777876654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=87.32  E-value=1.2  Score=28.45  Aligned_cols=34  Identities=15%  Similarity=0.148  Sum_probs=28.1

Q ss_pred             cccEEEEccC---hHHHHHHHHHhccCCCEEEEecCC
Q 034260            4 GIDVSFDCAG---LNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         4 G~D~vie~~G---~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      .+|+|+....   ....++++.+.+++||++++....
T Consensus       108 ~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          108 DPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             CCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            5899988765   457889999999999999997654

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=87.04  E-value=0.31  Score=35.18  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+.+.|-..++.|.+-|++..+..
T Consensus        90 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~  126 (338)
T 3lvf_P           90 LNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPAT  126 (338)
T ss_dssp             TTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             cCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence            3799999999998788888899998888788877654

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=86.15  E-value=0.31  Score=35.16  Aligned_cols=37  Identities=16%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|...+.+.+-..++.|.+.|++..+.++
T Consensus        89 gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~d  125 (342)
T 2ep7_A           89 GVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKN  125 (342)
T ss_dssp             TCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCBS
T ss_pred             CCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCCC
Confidence            7999999999887788888888888777777766543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=85.84  E-value=0.36  Score=35.06  Aligned_cols=35  Identities=6%  Similarity=0.116  Sum_probs=26.6

Q ss_pred             cccEEEEccChHHHHH--HHHHh-c---cCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLNKTMS--TVLDA-T---RAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~~~~~--~al~~-l---~~gGrvv~vG~~~   38 (100)
                      ++|+|++|+|.+..+.  ..++. +   +++|++++++...
T Consensus       227 ~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          227 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            5899999999765432  55665 3   6788999999875

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=85.50  E-value=0.68  Score=32.64  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccC--CCEEEE
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRA--GDKVCL   33 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~--gGrvv~   33 (100)
                      .++|+|++|+|.....+.+.++++.  |..++.
T Consensus        70 ~~iDvV~~atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           70 ADIDFVFDATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             GGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCCcEEEECCChHHHHHHHHHHHHhCCCCEEEE
Confidence            4689999999988888999999987  777766

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=85.32  E-value=0.3  Score=35.36  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=31.0

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|.-.+.+.|-..++.|.+-|++..+..
T Consensus        90 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps~  126 (345)
T 4dib_A           90 LGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPGK  126 (345)
T ss_dssp             TTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             cCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCCC
Confidence            3799999999998788888888988888788877654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=84.99  E-value=0.36  Score=35.98  Aligned_cols=38  Identities=21%  Similarity=0.514  Sum_probs=31.5

Q ss_pred             cccEEEEccChHHHHH-HHHHhccCCCEEEEecCCCCCc
Q 034260            4 GIDVSFDCAGLNKTMS-TVLDATRAGDKVCLVGMGHHDM   41 (100)
Q Consensus         4 G~D~vie~~G~~~~~~-~al~~l~~gGrvv~vG~~~~~~   41 (100)
                      .+|+++.|+|....+. +.++.+++++.++-+|.+..++
T Consensus       275 ~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EI  313 (435)
T 3gvp_A          275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEI  313 (435)
T ss_dssp             TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTB
T ss_pred             cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccC
Confidence            5899999999776675 8899999999999988775443

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=84.86  E-value=0.36  Score=34.50  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ++|+||||+|...+.+.+-+.++.|.++|.++.+.
T Consensus        88 ~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           88 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            68999999999878888888888899999988765

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=84.84  E-value=0.43  Score=34.87  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|...+.+.+-+.++.|.+-|++..+..
T Consensus        91 gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~  126 (380)
T 2d2i_A           91 DIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK  126 (380)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC
Confidence            789999999988777888888888888777777654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=84.79  E-value=1.5  Score=28.42  Aligned_cols=35  Identities=9%  Similarity=0.047  Sum_probs=27.4

Q ss_pred             cccEEEEccChH-HHHHHHHHhccCCCEEEEecCCC
Q 034260            4 GIDVSFDCAGLN-KTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         4 G~D~vie~~G~~-~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      .+|+|+...+.. ..++++.+.++|||++++.....
T Consensus       122 ~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          122 LPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             CCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECSH
T ss_pred             CCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecCc
Confidence            589988765433 37899999999999999877553

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=84.73  E-value=0.55  Score=33.78  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|...+.+.+-..++.|.+.|++..+..
T Consensus        90 ~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps~  126 (335)
T 1obf_O           90 LKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (335)
T ss_dssp             TTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             cCCCEEEEccCccccHHHHHHHHHcCCCEEEECCccc
Confidence            3899999999987777777788877776666665543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=84.10  E-value=1.4  Score=27.22  Aligned_cols=36  Identities=17%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             CcccEEEEccChH--HHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCAGLN--KTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~G~~--~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ..+|+|+......  ..++++.+.+++||++++.....
T Consensus        93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  130 (178)
T 3hm2_A           93 DNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAVTV  130 (178)
T ss_dssp             SCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEECSH
T ss_pred             CCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEeecc
Confidence            4689988665433  47999999999999999876544

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=83.99  E-value=0.56  Score=33.66  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=29.6

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|...+.+.+-+.++.|.+-|++-.+..
T Consensus        91 ~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~  126 (339)
T 3b1j_A           91 DIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK  126 (339)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC
Confidence            799999999988777788888888888777776654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=83.97  E-value=0.27  Score=32.90  Aligned_cols=33  Identities=12%  Similarity=0.056  Sum_probs=27.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      .+|+|+ +...+..++++.+.++|||+++++...
T Consensus       148 ~fD~v~-~~~~~~~l~~~~~~L~pgG~l~~~~~~  180 (269)
T 1p91_A          148 SMDAII-RIYAPCKAEELARVVKPGGWVITATPG  180 (269)
T ss_dssp             CEEEEE-EESCCCCHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceeEEE-EeCChhhHHHHHHhcCCCcEEEEEEcC
Confidence            589988 455567899999999999999988543

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=83.57  E-value=0.56  Score=33.55  Aligned_cols=36  Identities=11%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|...+.+.+-++++.|-+-+++-.+.+
T Consensus        93 ~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa~  128 (337)
T 3e5r_O           93 GAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK  128 (337)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCCC
Confidence            689999999998888888888888775566666654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=83.23  E-value=1.3  Score=29.51  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=25.4

Q ss_pred             cccEEEEcc---ChHHHHHHHHHhccCCCEEEEecCC
Q 034260            4 GIDVSFDCA---GLNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         4 G~D~vie~~---G~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      .+|+|+-..   ..+..++.+.++++|||.+++-...
T Consensus       136 ~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          136 AFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             CeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            689988332   3346789999999999999876543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=82.06  E-value=1.4  Score=26.68  Aligned_cols=36  Identities=11%  Similarity=0.178  Sum_probs=26.9

Q ss_pred             cccEEEE-----ccCh------------HHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFD-----CAGL------------NKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie-----~~G~------------~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .+|+|+.     +.+.            ...++.+.+.+++||++++......
T Consensus        88 ~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             ceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            5788887     3333            3678889999999999998665443

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=81.03  E-value=1.5  Score=31.08  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=27.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMG   37 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~   37 (100)
                      ++|+||+|+|...+.+.+-.+++.|.+++-.+..
T Consensus        61 ~~DvV~~a~g~~~s~~~a~~~~~~G~~vId~s~~   94 (331)
T 2yv3_A           61 PVDLVLASAGGGISRAKALVWAEGGALVVDNSSA   94 (331)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTTCEEEECSSS
T ss_pred             CCCEEEECCCccchHHHHHHHHHCCCEEEECCCc
Confidence            6899999999987888887888888777776654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=80.66  E-value=1.4  Score=28.95  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=26.9

Q ss_pred             CcccEEEEccChH---HHHHHHHHhccCCCEEEEec
Q 034260            3 AGIDVSFDCAGLN---KTMSTVLDATRAGDKVCLVG   35 (100)
Q Consensus         3 ~G~D~vie~~G~~---~~~~~al~~l~~gGrvv~vG   35 (100)
                      ..+|+|+...+..   ..++.+.+.+++||++++.-
T Consensus       146 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          146 SSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            4689998876654   56799999999999999854

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=80.49  E-value=1.5  Score=27.75  Aligned_cols=36  Identities=11%  Similarity=0.101  Sum_probs=27.4

Q ss_pred             CcccEEEEccCh---------------HHHHHHHHHhccCCCEEEEecCCC
Q 034260            3 AGIDVSFDCAGL---------------NKTMSTVLDATRAGDKVCLVGMGH   38 (100)
Q Consensus         3 ~G~D~vie~~G~---------------~~~~~~al~~l~~gGrvv~vG~~~   38 (100)
                      ..+|+|+-..+.               ...++++.+++++||+++++....
T Consensus        92 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           92 CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            357888865533               357899999999999999886543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=80.39  E-value=0.39  Score=30.96  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=26.3

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEec
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVG   35 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG   35 (100)
                      .+|+|+.+.+.....+.+.+.+++||++++.=
T Consensus       146 ~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CeeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            58999988776655678899999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=80.06  E-value=1.1  Score=27.64  Aligned_cols=37  Identities=11%  Similarity=-0.043  Sum_probs=26.7

Q ss_pred             CcccEEEEccChHHHHHHHHHhccC-CCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRA-GDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~-gGrvv~vG~~~~   39 (100)
                      .++|+++.|++.+.....+...+++ +|...+++....
T Consensus        83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECC
Confidence            3689999999998777777777775 665555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	0.001

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 1   MGAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPA 48
            G G D   +  G ++ +    +  R G    + G+      VP    
Sbjct: 97  HGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVY 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.62
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.51
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.49
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.46
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.36
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.28
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.26
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.21
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.19
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.19
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.16
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.12
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.09
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.98
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.94
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.93
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.84
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.83
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.53
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	98.43
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.35
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.81
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.96
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.23
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.17
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.12
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.85
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.8
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.53
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.45
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.25
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.03
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.86
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.71
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.45
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	90.04
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	83.03
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	82.39

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-15  Score=98.33  Aligned_cols=75  Identities=28%  Similarity=0.448  Sum_probs=66.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      |.++|++|||+|.+.++++++++++++|+++++|.+.++.++|+..++.|+++|+|      +++++.++.+++++++++
T Consensus        95 g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~G------s~~~~~~~~~al~li~~g  168 (171)
T d1pl8a2          95 GCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKG------VFRYCNTWPVAISMLASK  168 (171)
T ss_dssp             TSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEE------CCSCSSCHHHHHHHHHTT
T ss_pred             CCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEE------EeCCHhHHHHHHHHHHcC
Confidence            56899999999999999999999999999999999988889999999999999995      556655566888888876


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      +
T Consensus       169 k  169 (171)
T d1pl8a2         169 S  169 (171)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.62  E-value=1.4e-15  Score=97.95  Aligned_cols=75  Identities=32%  Similarity=0.468  Sum_probs=65.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhcC
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISGQ   81 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~~   81 (100)
                      |+++|++|||+|.+.++++++++++++|+++++|.+.++.++++..++.|+++|+|      ++++++++.+++++++++
T Consensus        96 g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~g------s~~~~~~~~~ai~li~~G  169 (170)
T d1e3ja2          96 GDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKS------VFRYCNDYPIALEMVASG  169 (170)
T ss_dssp             SSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEE------CCSCSSCHHHHHHHHHTT
T ss_pred             ccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEE------EECCHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999988888999999999999995      555655555778888876


Q ss_pred             C
Q 034260           82 T   82 (100)
Q Consensus        82 ~   82 (100)
                      +
T Consensus       170 k  170 (170)
T d1e3ja2         170 R  170 (170)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.51  E-value=1.7e-14  Score=94.02  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      |+|+|++|||+|++.++++++++++++ |+++++|.+.++.++++..++. +++|+||++  |++.. .+++ +.+.++.
T Consensus        96 ~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~Gs~~--Gs~~~-~~d~p~li~l~~  171 (174)
T d1e3ia2          96 AGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFF--GGWKS-VDSVPNLVSDYK  171 (174)
T ss_dssp             TSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEECSG--GGCCH-HHHHHHHHHHHH
T ss_pred             cCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc-cCEEEEEEe--eCCCh-HHHHHHHHHHHH
Confidence            568999999999999999999999996 9999999998888888877654 679998876  66654 3445 4455555


Q ss_pred             cC
Q 034260           80 GQ   81 (100)
Q Consensus        80 ~~   81 (100)
                      ++
T Consensus       172 ~G  173 (174)
T d1e3ia2         172 NK  173 (174)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.51  E-value=9.4e-15  Score=94.02  Aligned_cols=75  Identities=19%  Similarity=0.110  Sum_probs=64.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      |+++|+++||+|.+.++++++++++++|+++++|....+.+++...++.|++++.|      ++.++++++ +.++++++
T Consensus        95 ~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~G------s~~~~~~d~~~~l~lv~~  168 (170)
T d1jvba2          95 SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVG------SLVGNQSDFLGIMRLAEA  168 (170)
T ss_dssp             TSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEE------CCSCCHHHHHHHHHHHHT
T ss_pred             cccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEE------EecCCHHHHHHHHHHHHc
Confidence            45799999999999999999999999999999999988899999999999999995      666666766 55677776


Q ss_pred             CC
Q 034260           81 QT   82 (100)
Q Consensus        81 ~~   82 (100)
                      ++
T Consensus       169 GK  170 (170)
T d1jvba2         169 GK  170 (170)
T ss_dssp             TS
T ss_pred             CC
Confidence            53

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.49  E-value=2.6e-14  Score=92.62  Aligned_cols=77  Identities=9%  Similarity=0.010  Sum_probs=62.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++|+|++|||+|.++++++++++++++|+++++|.+..  +.++++..++.|+++++||++  |++.+ ++++ +.++++
T Consensus        94 ~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~--g~~~~-~~~~~~~~~l~  170 (174)
T d1f8fa2          94 DGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVE--GSGSP-KKFIPELVRLY  170 (174)
T ss_dssp             TSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSG--GGSCH-HHHHHHHHHHH
T ss_pred             CCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEe--cCCCh-HHHHHHHHHHH
Confidence            45899999999999999999999999999999998753  467899999999999998664  44433 3455 556777


Q ss_pred             hcC
Q 034260           79 SGQ   81 (100)
Q Consensus        79 ~~~   81 (100)
                      +++
T Consensus       171 ~~G  173 (174)
T d1f8fa2         171 QQG  173 (174)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.46  E-value=5.6e-14  Score=90.72  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=61.4

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~   80 (100)
                      |+|+|++|||+|.+.++++++++++++||++++|.+. +.++|+..++.|+++|+|      ++.++++++ +.++++++
T Consensus        98 ~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k~~~i~G------s~~~~~~d~~~~l~l~~~  170 (172)
T d1h2ba2          98 GRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEG------SLVGNYVELHELVTLALQ  170 (172)
T ss_dssp             TCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhCCcEEEE------EEecCHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999754 578899999999999995      555556666 55667766


Q ss_pred             C
Q 034260           81 Q   81 (100)
Q Consensus        81 ~   81 (100)
                      +
T Consensus       171 G  171 (172)
T d1h2ba2         171 G  171 (172)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=2.1e-13  Score=88.60  Aligned_cols=74  Identities=12%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChH-HHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLT-PAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~-~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      |.|+|+||||+|.+.++++++++++++|+++++|...+  ++++++. .++.|+++++|      ++.++++++ +++.+
T Consensus        98 ~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G------~~~~~~~~~~~~~~~  171 (182)
T d1vj0a2          98 GRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKG------IWVSDTSHFVKTVSI  171 (182)
T ss_dssp             TSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEE------CCCCCHHHHHHHHHH
T ss_pred             CCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEE------EEeCCHHHHHHHHHH
Confidence            56899999999999999999999999999999998754  4455554 46789999995      666666655 55666


Q ss_pred             HhcC
Q 034260           78 ISGQ   81 (100)
Q Consensus        78 l~~~   81 (100)
                      +++.
T Consensus       172 i~~~  175 (182)
T d1vj0a2         172 TSRN  175 (182)
T ss_dssp             HHTC
T ss_pred             HHHC
Confidence            6554

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.28  E-value=3.3e-12  Score=81.50  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQ   81 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~   81 (100)
                      .|.|.++++++.+.++++++++++++|+++++|.+.++.+++...++.|+++|+|      ++.++++++ +.+++++++
T Consensus        92 ~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~G------s~~~~~~d~~e~l~l~~~G  165 (166)
T d1llua2          92 GGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAG------SIVGTRADLQEALDFAGEG  165 (166)
T ss_dssp             SSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHTT
T ss_pred             cCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEE------EeecCHHHHHHHHHHHHCc
Confidence            3578889999999999999999999999999999888888999999999999995      555566666 556677665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.26  E-value=1e-11  Score=80.37  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccC-CCEEEEecCCCCCccc--ChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRA-GDKVCLVGMGHHDMTV--PLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~-gGrvv~vG~~~~~~~i--~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~   77 (100)
                      |+|+|++|||+|.+.++++++.++++ +|+++++|.+....++  ++.. +.++++|+||++  |++.  ++++ +.+++
T Consensus        95 ~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~--G~~~--~~d~~~lidl  169 (174)
T d1p0fa2          95 NGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLL-LLTGRSLKGSVF--GGFK--GEEVSRLVDD  169 (174)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHH-HHTTCEEEECSG--GGCC--GGGHHHHHHH
T ss_pred             CCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHH-HhCCCEEEEEEe--CCCC--HHHHHHHHHH
Confidence            56899999999999999999999977 5999999998765444  4444 457899998775  5532  3455 44556


Q ss_pred             HhcC
Q 034260           78 ISGQ   81 (100)
Q Consensus        78 l~~~   81 (100)
                      +.++
T Consensus       170 ~~~g  173 (174)
T d1p0fa2         170 YMKK  173 (174)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            5554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.21  E-value=2.7e-11  Score=77.71  Aligned_cols=78  Identities=17%  Similarity=0.086  Sum_probs=58.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEE-EEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhHHHHHHHhc
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKV-CLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRKMLYISG   80 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrv-v~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~i~~l~~   80 (100)
                      ++|+|+++||+|...++++++++++++|.+ +++|.......++...++.++++|+||++  |++.+..+..+.++++++
T Consensus        96 ~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~--G~~~~~~d~~~~i~l~~~  173 (175)
T d1cdoa2          96 NGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMF--GGFKGKDGVPKMVKAYLD  173 (175)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSG--GGCCHHHHHHHHHHHHHT
T ss_pred             cCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEE--eCCcHHHHHHHHHHHHHc
Confidence            468999999999999999999998887555 45566555556666777889999998775  665543333466777766


Q ss_pred             C
Q 034260           81 Q   81 (100)
Q Consensus        81 ~   81 (100)
                      +
T Consensus       174 g  174 (175)
T d1cdoa2         174 K  174 (175)
T ss_dssp             T
T ss_pred             C
Confidence            5

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=5.1e-12  Score=81.02  Aligned_cols=73  Identities=5%  Similarity=-0.010  Sum_probs=55.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeEeeceeeeeechhhHHH-HHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFRK-MLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~-i~~l~   79 (100)
                      ++++|++|||+|.+.++++++++++++|+++++|.+.++ ..++...++.|+++|.|      ++.+++.+.++ +++++
T Consensus        91 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~G------s~~~~~~d~~e~l~l~a  164 (168)
T d1uufa2          91 LKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG------SMIGGIPETQEMLDFCA  164 (168)
T ss_dssp             TTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEE------CCSCCHHHHHHHHHHHH
T ss_pred             cCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEE------EeecCHHHHHHHHHHHH
Confidence            357999999999988999999999999999999987653 56788889999999995      55555666644 55555


Q ss_pred             c
Q 034260           80 G   80 (100)
Q Consensus        80 ~   80 (100)
                      +
T Consensus       165 ~  165 (168)
T d1uufa2         165 E  165 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.19  E-value=2.7e-11  Score=76.91  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHhcCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYISGQT   82 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~~~~   82 (100)
                      +.|.++++++.+.++++++++++++|+++++|...++.+++...++.|+++++|      ++.++++++ ++++++++++
T Consensus        93 ~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~g------s~~~~~~~~~~~l~l~~~Gk  166 (168)
T d1rjwa2          93 GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG------SIVGTRKDLQEALQFAAEGK  166 (168)
T ss_dssp             SEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEE------CCSCCHHHHHHHHHHHHTTS
T ss_pred             CCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEE------EeeCCHHHHHHHHHHHHhCC
Confidence            467778888989999999999999999999999988888999999999999995      555556666 5567787775


Q ss_pred             C
Q 034260           83 P   83 (100)
Q Consensus        83 ~   83 (100)
                      -
T Consensus       167 i  167 (168)
T d1rjwa2         167 V  167 (168)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.16  E-value=3.6e-11  Score=77.88  Aligned_cols=72  Identities=15%  Similarity=0.048  Sum_probs=54.9

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCC-CEEEEecCCCCCcc--cChHHHHhcCcEEEeEeeceeeeeechhhHHH-HHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAG-DKVCLVGMGHHDMT--VPLTPAAARYLIYGFLFFFFLVLGYSVIYFRK-MLY   77 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~g-Grvv~vG~~~~~~~--i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~~-i~~   77 (100)
                      |+|+|++|||+|.+.+.++++..++++ |+++++|.+..+.+  +++.. +.++++|+||++  |+.++ ++|++. +.+
T Consensus        97 g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~--G~~~~-~~dip~li~~  172 (176)
T d1d1ta2          97 GNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVF--GGLKS-RDDVPKLVTE  172 (176)
T ss_dssp             TSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHH-HHTTCEEEECSG--GGCCH-HHHHHHHHHH
T ss_pred             cccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHH-HhCCCEEEEEEE--eCCCc-HHHHHHHHHH
Confidence            568999999999999999999988766 99999999876544  44444 457899998875  66655 445544 444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.15  E-value=1.5e-11  Score=79.55  Aligned_cols=56  Identities=14%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcc--cCh--HHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMT--VPL--TPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~--i~~--~~l~~k~~~i~G   57 (100)
                      |+|+|++|||+|.+.++++++++++++|+++++|.+.....  ++.  .....+++++.|
T Consensus        94 g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g  153 (174)
T d1jqba2          94 GKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKG  153 (174)
T ss_dssp             TSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEE
T ss_pred             ccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEE
Confidence            56899999999999999999999999999999998875433  322  224568899996

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=6.5e-12  Score=80.56  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             CcccEEEEccChHH--HHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHHh
Q 034260            3 AGIDVSFDCAGLNK--TMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYIS   79 (100)
Q Consensus         3 ~G~D~vie~~G~~~--~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l~   79 (100)
                      +++|+++||+|...  ++++++++++++|+++++|.+.++.+++...++.|+++|.|      ++.++++++ +.+++++
T Consensus        90 ~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~G------s~~g~~~~~~e~l~li~  163 (168)
T d1piwa2          90 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISY------SALGSIKELNQLLKLVS  163 (168)
T ss_dssp             SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEE------CCCCCHHHHHHHHHHHH
T ss_pred             cccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEE------EeeCCHHHHHHHHHHHH
Confidence            57899999988754  57899999999999999999888888888899999999995      544556666 5566777


Q ss_pred             cCCC
Q 034260           80 GQTP   83 (100)
Q Consensus        80 ~~~~   83 (100)
                      +++-
T Consensus       164 ~gkI  167 (168)
T d1piwa2         164 EKDI  167 (168)
T ss_dssp             HTTC
T ss_pred             hCCC
Confidence            6653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.12  E-value=9.8e-11  Score=75.19  Aligned_cols=77  Identities=14%  Similarity=0.036  Sum_probs=54.2

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecC-CCCCcc-cChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGM-GHHDMT-VPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~-~~~~~~-i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++|+|++|||+|.+.++++++++++++|+.++++. ...... .+...++.++++|+||++  |++.+ ++++ +.++++
T Consensus        96 ~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~--G~~~~-~~~~~~li~~~  172 (176)
T d2jhfa2          96 NGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIF--GGFKS-KDSVPKLVADF  172 (176)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG--GGCCH-HHHHHHHHHHH
T ss_pred             cCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEE--eCCCH-HHHHHHHHHHH
Confidence            46899999999999999999999999865555554 444332 233456679999998775  66544 3445 555666


Q ss_pred             hcC
Q 034260           79 SGQ   81 (100)
Q Consensus        79 ~~~   81 (100)
                      .++
T Consensus       173 ~~G  175 (176)
T d2jhfa2         173 MAK  175 (176)
T ss_dssp             HTT
T ss_pred             HCc
Confidence            554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.09  E-value=1.5e-10  Score=73.97  Aligned_cols=77  Identities=19%  Similarity=0.106  Sum_probs=56.3

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC--CcccChHHHHhcCcEEEeEeeceeeeeechhhH-HHHHHH
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH--DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYF-RKMLYI   78 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~--~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~-~~i~~l   78 (100)
                      ++|+|++|||+|.+.++++++.++++||++++++....  ....+....+.++++|+||++  |++.. .+++ +.+.++
T Consensus        96 ~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~--G~~~~-~~d~~~li~l~  172 (176)
T d2fzwa2          96 DGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAF--GGWKS-VESVPKLVSEY  172 (176)
T ss_dssp             TSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSG--GGCCH-HHHHHHHHHHH
T ss_pred             CCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEee--eCCcH-HHHHHHHHHHH
Confidence            46899999999999999999999999999988876543  233344445578999998765  55543 3444 555666


Q ss_pred             hcC
Q 034260           79 SGQ   81 (100)
Q Consensus        79 ~~~   81 (100)
                      .++
T Consensus       173 ~~G  175 (176)
T d2fzwa2         173 MSK  175 (176)
T ss_dssp             HTT
T ss_pred             HcC
Confidence            655

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.1e-10  Score=73.58  Aligned_cols=56  Identities=18%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCCcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      |+++|+++||+|. .++++++++++++||++.+|... +.++++..++.|+++++|++
T Consensus        95 ~~g~d~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k~~~i~g~~  150 (174)
T d1yb5a2          95 EKGIDIIIEMLAN-VNLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAKESSIIGVT  150 (174)
T ss_dssp             TTCEEEEEESCHH-HHHHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTTTCEEEECC
T ss_pred             cCCceEEeecccH-HHHHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHCCCEEEEEE
Confidence            5689999999996 68999999999999999999654 56788889999999999744

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=1.4e-10  Score=74.61  Aligned_cols=56  Identities=16%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+|++|||+|.  ++++++++++++|+++.+|.... +.++++..++.|+++++|++
T Consensus        89 ~~g~D~v~d~~G~--~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~  145 (171)
T d1iz0a2          89 WGGLDLVLEVRGK--EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFW  145 (171)
T ss_dssp             TTSEEEEEECSCT--THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECC
T ss_pred             cccccccccccch--hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEe
Confidence            4689999999994  68999999999999999998764 56789999999999999643

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=9.1e-10  Score=71.45  Aligned_cols=74  Identities=18%  Similarity=0.131  Sum_probs=57.6

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEeeceeeeeechhhHH-HHHHHh
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLFFFFLVLGYSVIYFR-KMLYIS   79 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~~~~g~~~~~~~~~~-~i~~l~   79 (100)
                      ++|+|+|+|++|. .++++++++++++||++.+|...+ ..++++..++.|++++.|+.    +...+.+... .+..++
T Consensus        96 ~~gvD~vid~vgg-~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~----~~~~~~~~~~~~~~~la  170 (176)
T d1xa0a2          96 KQRWAAAVDPVGG-RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGID----SVYCPMDLRLRIWERLA  170 (176)
T ss_dssp             SCCEEEEEECSTT-TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECC----SSSCCHHHHHHHHHHHH
T ss_pred             ccCcCEEEEcCCc-hhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEe----CCcCCHHHHHHHHHHHh
Confidence            4689999999997 589999999999999999998754 57899999999999999632    3334444443 344555


Q ss_pred             c
Q 034260           80 G   80 (100)
Q Consensus        80 ~   80 (100)
                      +
T Consensus       171 g  171 (176)
T d1xa0a2         171 G  171 (176)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.93  E-value=1.3e-09  Score=70.17  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~G   57 (100)
                      ++++|+++|++|. +++++++++++++||++.+|...+ +.++++..++.|+++++|
T Consensus        88 ~~gvd~vid~vgg-~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G  143 (167)
T d1tt7a2          88 KQQWQGAVDPVGG-KQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLG  143 (167)
T ss_dssp             CCCEEEEEESCCT-HHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEE
T ss_pred             CCCceEEEecCcH-HHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEE
Confidence            4689999999997 689999999999999999998875 578999999999999996

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.87  E-value=2.4e-09  Score=69.00  Aligned_cols=57  Identities=19%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-------CCcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-------HDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-------~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ++|+|+++||+|. +++++++++++++|+++++|...       .+..+++..++.|++++.|++
T Consensus        96 ~~Gvd~v~D~vG~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~  159 (182)
T d1v3va2          96 PDGYDCYFDNVGG-EFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFI  159 (182)
T ss_dssp             TTCEEEEEESSCH-HHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECC
T ss_pred             cCCCceeEEecCc-hhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEE
Confidence            4689999999996 68999999999999999999632       234567788999999999754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=4.2e-09  Score=69.01  Aligned_cols=56  Identities=14%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             CCcccEEEEccC---------------hHHHHHHHHHhccCCCEEEEecCCCCCc-------------ccChHHHHhcCc
Q 034260            2 GAGIDVSFDCAG---------------LNKTMSTVLDATRAGDKVCLVGMGHHDM-------------TVPLTPAAARYL   53 (100)
Q Consensus         2 G~G~D~vie~~G---------------~~~~~~~al~~l~~gGrvv~vG~~~~~~-------------~i~~~~l~~k~~   53 (100)
                      |.|+|++|||+|               .+.++++++++++++||++++|++..+.             ++++..++.|++
T Consensus        92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~  171 (195)
T d1kola2          92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSH  171 (195)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTC
T ss_pred             CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCceeeeHHHHHhhcc
Confidence            568999999999               3479999999999999999999865422             345556778999


Q ss_pred             EEEe
Q 034260           54 IYGF   57 (100)
Q Consensus        54 ~i~G   57 (100)
                      ++.+
T Consensus       172 ~i~~  175 (195)
T d1kola2         172 SFHT  175 (195)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            9974

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.83  E-value=4.7e-09  Score=68.06  Aligned_cols=57  Identities=12%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCC-CCcccChHHHHhcCcEEEeEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGH-HDMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~-~~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      |+++|+++||+|. +..++++++++++||++.+|... .+.+++...++.|++++.|.+
T Consensus       105 g~~vdvv~D~vg~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~~  162 (189)
T d1gu7a2         105 GGEAKLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFW  162 (189)
T ss_dssp             TCCEEEEEESSCH-HHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECC
T ss_pred             cCCceEEEECCCc-chhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEEE
Confidence            4679999999996 57899999999999999999765 467899999999999999743

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=8.2e-08  Score=61.95  Aligned_cols=55  Identities=18%  Similarity=0.165  Sum_probs=48.5

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhcCcEEEeEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAARYLIYGFLF   59 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k~~~i~Gs~   59 (100)
                      ..|.++|++|. ++++.++++++++||++.+|.... +.+++...++.|++++.|+.
T Consensus        96 ~~~~vvD~Vgg-~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~  151 (177)
T d1o89a2          96 VWAGAIDTVGD-KVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVD  151 (177)
T ss_dssp             CEEEEEESSCH-HHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECC
T ss_pred             cCCeeEEEcch-HHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEe
Confidence            46999999997 589999999999999999998764 57788999999999999743

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=1.7e-07  Score=60.40  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-------CcccC---hHHHHhcCcEEEe
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-------DMTVP---LTPAAARYLIYGF   57 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-------~~~i~---~~~l~~k~~~i~G   57 (100)
                      ++|+|+++||+|. +++++++++++++||++.+|....       +.+.+   ...+..|+++++|
T Consensus        98 ~~GvDvv~D~vGg-~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g  162 (187)
T d1vj1a2          98 PGGVDVYFDNVGG-DISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRER  162 (187)
T ss_dssp             TTCEEEEEESSCH-HHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEE
T ss_pred             ccCceEEEecCCc-hhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEE
Confidence            4689999999996 689999999999999999996432       11111   2335679999996

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=2.8e-07  Score=58.59  Aligned_cols=56  Identities=14%  Similarity=0.160  Sum_probs=43.0

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC-cccChHHHHhcCcEEEeE
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD-MTVPLTPAAARYLIYGFL   58 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~-~~i~~~~l~~k~~~i~Gs   58 (100)
                      |+|+|+++||+|. +++++++++++++||++.+|..... ..........|++++.+.
T Consensus        92 ~~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  148 (183)
T d1pqwa_          92 GYGVDVVLNSLAG-EAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVV  148 (183)
T ss_dssp             TCCEEEEEECCCT-HHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEEC
T ss_pred             CCCEEEEEecccc-hHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEE
Confidence            4689999999997 6899999999999999999976532 222222344788998853

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=1.3e-05  Score=50.43  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=41.7

Q ss_pred             CCcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC-CcccChHHHHhc-CcEEE
Q 034260            2 GAGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH-DMTVPLTPAAAR-YLIYG   56 (100)
Q Consensus         2 G~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~-~~~i~~~~l~~k-~~~i~   56 (100)
                      |+++|+++||+|. +++++++++++++|+++++|.... +.+++...+..+ .+.+.
T Consensus        95 g~g~d~v~d~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  150 (179)
T d1qora2          95 GKKVRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVT  150 (179)
T ss_dssp             TCCEEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEE
T ss_pred             CCCeEEEEeCccH-HHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEE
Confidence            5689999999996 589999999999999999997664 455666555444 34443

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.96  E-value=0.0032  Score=39.65  Aligned_cols=36  Identities=17%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||||.-.+.+.+-..+..|-+.|+++.+.+
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            689999999999999999999999999999998764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.23  E-value=0.0052  Score=38.71  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=32.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|.-.+.+.+-..++.|.+-|++..+..+
T Consensus        87 gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d  123 (169)
T d1dssg1          87 GAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSAD  123 (169)
T ss_dssp             TCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSS
T ss_pred             CCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccc
Confidence            7999999999988889999999999999999887654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=95.17  E-value=0.0043  Score=39.18  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      .|+|+|+||+|.-.+.+.+-..+..|.+-|++..+.+
T Consensus        90 ~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          90 LKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             TTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             cccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            3799999999998788888899988988888887754

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.12  E-value=0.013  Score=36.70  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||||.-.+.+.+-..+..|-++++.+.+.+
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~~  113 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEKH  113 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCH
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            589999999998888888888988999888876653

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0058  Score=38.41  Aligned_cols=37  Identities=30%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      |+|+|+||+|.-.+.+.+-..+..|.+=|++..+..+
T Consensus        88 gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~d  124 (166)
T d1gado1          88 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKD  124 (166)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCSS
T ss_pred             CCCEEEEccccccCHHHHHHHhcCCCceEEeeccccc
Confidence            6999999999988888888999989888888877653

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=94.80  E-value=0.005  Score=38.85  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|.-.+.+.+-..++.|.+=|++..+..
T Consensus        88 ~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~  123 (171)
T d3cmco1          88 GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK  123 (171)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCcEEEEecCccCCHHHHHHHHhCCCceEEEecccc
Confidence            799999999998888888888888887788877764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.53  E-value=0.0064  Score=38.29  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||||.-.+.+.+-..++.|.+=|++..+..
T Consensus        89 gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~k  124 (169)
T d1hdgo1          89 GVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK  124 (169)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCCEEEEecceeccccchhhhccCCCceEEEecccC
Confidence            689999999998888888889988887777877764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.45  E-value=0.02  Score=35.99  Aligned_cols=36  Identities=8%  Similarity=-0.094  Sum_probs=29.4

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||||.-...+.+-..++.|-++++.|....
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~~~~  112 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKA  112 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCG
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECCCCc
Confidence            589999999998888888888888878887765543

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.25  E-value=0.0097  Score=37.26  Aligned_cols=36  Identities=17%  Similarity=0.228  Sum_probs=31.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      ++|+|+||+|.-.+.+.+-..+..|.+=|++..+..
T Consensus        88 gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  123 (166)
T d2b4ro1          88 QVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK  123 (166)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence            799999999998888888899988888888877754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=94.03  E-value=0.015  Score=36.55  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CcccEEEEccChHHHHHHHHHhccCCCEEEEecCCCCC
Q 034260            3 AGIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHHD   40 (100)
Q Consensus         3 ~G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~~   40 (100)
                      .|+|+|+||+|.-.+.+.+-..+..|.+=|++..+..+
T Consensus        88 ~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~d  125 (169)
T d1u8fo1          88 AGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSAD  125 (169)
T ss_dssp             TTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCSS
T ss_pred             cCCCEEEEecceeccHHHHHHHHhcCCceEeecccccc
Confidence            37999999999988888888889999888888877653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.86  E-value=0.011  Score=37.28  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|.-.+.+.+-..+..|.+=|++..+..
T Consensus        90 gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~k  125 (172)
T d1rm4a1          90 GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK  125 (172)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCCB
T ss_pred             CCCEEEecCceEccHHHHHHHHhcCCceEEeecccc
Confidence            799999999997778888888888887777777653

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.71  E-value=0.012  Score=37.58  Aligned_cols=36  Identities=14%  Similarity=0.307  Sum_probs=31.0

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|.-.+.+.+...+..|.+=|++..+..
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  138 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPAS  138 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCcEEEEecccccccccchhhcccCcceeeeccCCc
Confidence            799999999988888888889988888888877654

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.45  E-value=0.012  Score=36.87  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=31.2

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEecCCCC
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLVGMGHH   39 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~vG~~~~   39 (100)
                      |+|+|+||+|.-.+.+.+-..++.|.+=|++..+..
T Consensus        86 gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          86 GVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             TEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            789999999998888888889988888888887764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.03  E-value=0.11  Score=32.92  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.7

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEE
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCL   33 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~   33 (100)
                      .+|+++.+.+.....+..++.|+|||++++
T Consensus       144 ~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPETWFTQLKEGGRVIV  173 (213)
T ss_dssp             CEEEEEECSBBSCCCHHHHHHEEEEEEEEE
T ss_pred             chhhhhhhccHHHhHHHHHHhcCCCcEEEE
Confidence            479999887766556778899999999987

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.39  E-value=0.14  Score=32.72  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=25.9

Q ss_pred             cccEEEEccChHHHHHHHHHhccCCCEEEEe
Q 034260            4 GIDVSFDCAGLNKTMSTVLDATRAGDKVCLV   34 (100)
Q Consensus         4 G~D~vie~~G~~~~~~~al~~l~~gGrvv~v   34 (100)
                      .+|+++-+.+.+...+..++.|++||++|+.
T Consensus       150 ~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         150 PYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            4799998877776667889999999999873