Citrus Sinensis ID: 034278

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSPPPTSH
Secondary Structure (PSIPRED)
cccccEEEEEccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccccEEEEEEccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEcEEEEEEEEEcccEEEEEEccEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mlegkaliedtdmPVKMQLYAMASASqaldvydvfdcKSIAAHIKKEFdkrygggwqcvvgsnfgcffthtegtfiYFQLETLKFLIfkgsssppptsh
Flexible Loop (DISEMBL)
mlegkaliedtdmPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIfkgsssppptsh
Low Complexity Region (SEG)
MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSPPPTSH
Disordered region (IsUnstruct)
**************VKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFK**********
Disordered Region (DISOPRED)
**EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIF***********
Disordered Region (DISEMBL)
MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFK**********
Disordered Region (DISPRO)
****KALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSPPPTSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P63170	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	2e-17
P63169	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	2e-17
P63168	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	2e-17
P61273	89	Dynein light chain 1, cyt	N/A	no	0.888	0.988	0.477	2e-17
P63167	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	2e-17
P61285	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	2e-17
O02414	89	Dynein light chain LC6, f	N/A	no	0.888	0.988	0.488	2e-17
Q94748	89	Probable dynein light cha	N/A	no	0.888	0.988	0.466	4e-17
Q22799	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	6e-17
Q24117	89	Dynein light chain 1, cyt	yes	no	0.888	0.988	0.477	8e-17

>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.
Rattus norvegicus (taxid: 10116)

>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Mus musculus (taxid: 10090)

>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Macaca fascicularis (taxid: 9541)

>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Homo sapiens (taxid: 9606)

>sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Regulates apoptotic activities of BCL2L11 by sequestering it to microtubules. Upon apoptotic stimuli the BCL2L11-DYNLL1 complex dissociates from cytoplasmic dynein and translocates to mitochondria and sequesters BCL2 thus neutralizing its antiapoptotic activity.

Bos taurus (taxid: 9913)

>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M E KA+I++ DMP  MQ  A+  A+QAL+ +++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSERKAVIKNADMPEDMQQDAVDCATQALEKFNI--EKDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAVLLFKS 88

Anthocidaris crassispina (taxid: 7629)

>sp|Q94748|DYL2_SCHMA Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M E KA+I++ DM   MQ  A+ +A+ ALD Y++   K +AA+IKKEFD++Y   W C+V
Sbjct: 1  MGERKAVIKNADMHEDMQETAVHTAAAALDKYEI--EKDVAAYIKKEFDRKYNPNWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G +FG + TH    FIYF L+   FL+FK 
Sbjct: 59 GKHFGSYVTHETQHFIYFYLQERAFLLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Schistosoma mansoni (taxid: 6183)

>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M++ KA+I++ DM   MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MVDRKAVIKNADMSDDMQQDAIDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

Acts as a non-catalytic accessory component of a dynein complex.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
224070903	94	predicted protein [Populus trichocarpa]	0.949	1.0	0.861	1e-42
255549960	112	cytoplasmic dynein light chain, putative	0.949	0.839	0.861	2e-42
238478830	94	RHO guanyl-nucleotide exchange factor 11	0.949	1.0	0.840	5e-42
297852976	94	dynein light chain type 1 family protein	0.949	1.0	0.829	1e-41
449448176	676	PREDICTED: rho guanine nucleotide exchan	0.939	0.137	0.784	1e-40
356557277	743	PREDICTED: rho guanine nucleotide exchan	0.909	0.121	0.822	2e-39
357454935	91	Dynein light chain [Medicago truncatula]	0.909	0.989	0.844	5e-39
225442599	95	PREDICTED: dynein light chain LC6, flage	0.949	0.989	0.829	1e-38
358249056	95	uncharacterized protein LOC100808818 [Gl	0.929	0.968	0.804	6e-38
255546455	93	cytoplasmic dynein light chain, putative	0.939	1.0	0.817	8e-38

>gi|224070903|ref|XP_002303289.1| predicted protein [Populus trichocarpa] gi|222840721|gb|EEE78268.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 89/94 (94%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKALIEDTDMP+KMQ+ AMASASQALD+YDV DCKS+A+HIKKEFD RYGGGWQCVV
Sbjct: 1  MLEGKALIEDTDMPLKMQIQAMASASQALDLYDVLDCKSVASHIKKEFDLRYGGGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSP 94
          GSNFGCFFTH++GTFIYF LETL FLIFKG+SSP
Sbjct: 61 GSNFGCFFTHSKGTFIYFTLETLNFLIFKGASSP 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549960|ref|XP_002516031.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223544936|gb|EEF46451.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  175 bits (444), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 88/94 (93%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKALIEDTDMPVKMQ+ AMA ASQALD+YDV DCKSIAAHIKKEFD +YGGGWQCVV
Sbjct: 1  MLEGKALIEDTDMPVKMQIQAMACASQALDLYDVLDCKSIAAHIKKEFDMKYGGGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSP 94
          GSNFGCFFTH++G+FIYF LETL FLIFKG+SSP
Sbjct: 61 GSNFGCFFTHSKGSFIYFTLETLNFLIFKGASSP 94

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478830|ref|NP_001154419.1| RHO guanyl-nucleotide exchange factor 11 [Arabidopsis thaliana] gi|6850349|gb|AAF29412.1|AC022354_11 dynein light chain, putative [Arabidopsis thaliana] gi|12323118|gb|AAG51538.1|AC037424_3 unknown protein; 73838-74229 [Arabidopsis thaliana] gi|38454092|gb|AAR20740.1| At1g52250 [Arabidopsis thaliana] gi|46402458|gb|AAS92331.1| At1g52250 [Arabidopsis thaliana] gi|332194653|gb|AEE32774.1| RHO guanyl-nucleotide exchange factor 11 [Arabidopsis thaliana]

 Score =  174 bits (442), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 90/94 (95%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA++ED+DMPVKMQ+ AMA ASQALD++DVFDCKSIA HIKKEFD+RYG GWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSP 94
          GSNFGCFFTH++GTFIYFQLETLKFLIFKG+S+P
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852976|ref|XP_002894369.1| dynein light chain type 1 family protein [Arabidopsis lyrata subsp. lyrata] gi|297340211|gb|EFH70628.1| dynein light chain type 1 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (439), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 90/94 (95%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA++ED+DMPVKMQ+ AM+ ASQALD++DVFDCKSIA HIKKEFD+RYG GWQCVV
Sbjct: 1  MLEGKAMVEDSDMPVKMQMQAMSFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSP 94
          GSNFGCFFTH++GTFIYFQLETLKFLIFKG+S+P
Sbjct: 61 GSNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448176|ref|XP_004141842.1| PREDICTED: rho guanine nucleotide exchange factor 8-like [Cucumis sativus]

 Score =  170 bits (430), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/93 (78%), Positives = 86/93 (92%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKAL++DTDMP KMQ+ AM +AS+ALD+YDVFDCKSIAAHIKK+FD +YG GWQCVV
Sbjct: 1  MLEGKALVQDTDMPGKMQIQAMDAASKALDLYDVFDCKSIAAHIKKDFDNKYGSGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSS 93
          GSNFGCFFTH++G+FIYF+LETL FLIFKG +S
Sbjct: 61 GSNFGCFFTHSKGSFIYFKLETLNFLIFKGVTS 93

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557277|ref|XP_003546944.1| PREDICTED: rho guanine nucleotide exchange factor 8-like [Glycine max]

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 83/90 (92%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA+IEDTDMP KMQ+ AMASAS+ALD+YDVFDC SIAAHIKKEFD +YG GWQCVV
Sbjct: 1  MLEGKAVIEDTDMPDKMQIQAMASASEALDLYDVFDCTSIAAHIKKEFDTKYGSGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          GS+FGCFFTH++GTF+YF LETL FLIFKG
Sbjct: 61 GSSFGCFFTHSKGTFVYFTLETLNFLIFKG 90

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454935|ref|XP_003597748.1| Dynein light chain [Medicago truncatula] gi|355486796|gb|AES67999.1| Dynein light chain [Medicago truncatula]

 Score =  164 bits (416), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/90 (84%), Positives = 83/90 (92%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA+IEDTDMP KMQ+ AMA AS+ALD+YDV DCKSIAAHIKKEFD RYGGGWQCVV
Sbjct: 1  MLEGKAMIEDTDMPTKMQIQAMAYASEALDLYDVIDCKSIAAHIKKEFDARYGGGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          GS+FGCFFTH++GTFIYF LETL FLIFKG
Sbjct: 61 GSSFGCFFTHSKGTFIYFTLETLNFLIFKG 90

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442599|ref|XP_002284463.1| PREDICTED: dynein light chain LC6, flagellar outer arm [Vitis vinifera] gi|297743256|emb|CBI36123.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/94 (82%), Positives = 84/94 (89%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKALIEDTDMPVKMQ+ AMA ASQALD+YDV D KSIAA+IKKEFD  YG GWQCVV
Sbjct: 1  MLEGKALIEDTDMPVKMQIQAMACASQALDIYDVLDYKSIAAYIKKEFDMIYGTGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSP 94
          GSNFGCFFTH++GTFIYF LETL FLIFKG+SS 
Sbjct: 61 GSNFGCFFTHSKGTFIYFTLETLNFLIFKGASSS 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249056|ref|NP_001240241.1| uncharacterized protein LOC100808818 [Glycine max] gi|255640650|gb|ACU20610.1| unknown [Glycine max]

 Score =  161 bits (407), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 74/92 (80%), Positives = 84/92 (91%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA+IEDTDMP KMQ+ AMASA +ALD+YDVFDC SIAAHIKKEFD +YG GWQCVV
Sbjct: 1  MLEGKAVIEDTDMPDKMQIQAMASAYEALDLYDVFDCTSIAAHIKKEFDTKYGSGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSS 92
          GS+FGCFFTH++GTF+YF LETL FLIFKG+S
Sbjct: 61 GSSFGCFFTHSKGTFVYFTLETLNFLIFKGAS 92

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546455|ref|XP_002514287.1| cytoplasmic dynein light chain, putative [Ricinus communis] gi|223546743|gb|EEF48241.1| cytoplasmic dynein light chain, putative [Ricinus communis]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 85/93 (91%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          MLEGKA++++TDMPVKMQ+ AMA ASQALDVYDV DC  IAAHIKKEFDK+YGGGWQCVV
Sbjct: 1  MLEGKAMVKETDMPVKMQMQAMACASQALDVYDVSDCIFIAAHIKKEFDKKYGGGWQCVV 60

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSS 93
          GS+FG FFTHTEGTFIYF LE+L FLIFKG+SS
Sbjct: 61 GSSFGGFFTHTEGTFIYFALESLNFLIFKGASS 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
TAIR|locus:2093457	93	AT3G16120 "AT3G16120" [Arabido	0.929	0.989	0.760	1.5e-35
TAIR|locus:2131764	103	AT4G27360 "AT4G27360" [Arabido	0.959	0.922	0.536	6.1e-23
TAIR|locus:2018169	607	ROPGEF11 "ROP (rho of plants)	0.595	0.097	0.813	2.8e-22
UNIPROTKB|Q5F412	89	DYNLL1 "Uncharacterized protei	0.878	0.977	0.494	1.2e-17
UNIPROTKB|F1ME41	89	F1ME41 "Uncharacterized protei	0.878	0.977	0.483	1.6e-17
UNIPROTKB|P61285	89	DYNLL1 "Dynein light chain 1,	0.878	0.977	0.483	2e-17
UNIPROTKB|E2RK00	89	DYNLL1 "Uncharacterized protei	0.878	0.977	0.483	2e-17
UNIPROTKB|P63167	89	DYNLL1 "Dynein light chain 1,	0.878	0.977	0.483	2e-17
UNIPROTKB|D9U8D1	89	LC8 "Uncharacterized protein"	0.878	0.977	0.483	2e-17
UNIPROTKB|P61273	89	DYNLL1 "Dynein light chain 1,	0.878	0.977	0.483	2e-17

TAIR|locus:2093457 AT3G16120 "AT3G16120" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 70/92 (76%), Positives = 82/92 (89%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             MLEGKA +E+TDMPVKMQ+ AM  ASQ+LD++DVFD  SIAAHIKKEFD+RYG GWQCVV
Sbjct:     1 MLEGKAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVV 60

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSS 92
             G+NFGCFFTH++GTFIYF L TL FLIFKG++
Sbjct:    61 GTNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2131764 AT4G27360 "AT4G27360" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 51/95 (53%), Positives = 67/95 (70%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             MLEGKA++ DTDM   M+  A++ AS+ALD +DV +   IA  IKKEFD+ YG GWQC+V
Sbjct:     1 MLEGKAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIV 60

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKGSSSPP 95
             G++FG F TH  G FI+F + +L  L+FKGS   P
Sbjct:    61 GTHFGSFVTHCSGCFIHFSVGSLTILLFKGSVGEP 95

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005875 "microtubule associated complex" evidence=IEA;ISS

GO:0007017 "microtubule-based process" evidence=IEA;ISS

TAIR|locus:2018169 ROPGEF11 "ROP (rho of plants) guanine nucleotide exchange factor 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 48/59 (81%), Positives = 55/59 (93%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCV 59
             MLEGKA++ED+DMPVKMQ+ AMA ASQALD++DVFDCKSIA HIKKEFD+RYG GWQCV
Sbjct:     1 MLEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0080147 "root hair cell development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|Q5F412 DYNLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 44/89 (49%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MSDRKAVIKNADMSEEMQQDAVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|F1ME41 F1ME41 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MYDRKAIIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61285 DYNLL1 "Dynein light chain 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0072686 "mitotic spindle" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

UNIPROTKB|E2RK00 DYNLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P63167 DYNLL1 "Dynein light chain 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0007017 "microtubule-based process" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030235 "nitric-oxide synthase regulator activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042326 "negative regulation of phosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0005813 "centrosome" evidence=IDA

GO:0008180 "signalosome" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0007292 "female gamete generation" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

UNIPROTKB|D9U8D1 LC8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0042326 "negative regulation of phosphorylation" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008180 "signalosome" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

UNIPROTKB|P61273 DYNLL1 "Dynein light chain 1, cytoplasmic" [Macaca fascicularis (taxid:9541)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/89 (48%), Positives = 59/89 (66%)

Query:     1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
             M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct:     1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58

Query:    61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
             G NFG + TH    FIYF L  +  L+FK
Sbjct:    59 GRNFGSYVTHETKHFIYFYLGQVAILLFK 87

GO:0000776 "kinetochore" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q22799	DYL1_CAEEL	No assigned EC number	0.4777	0.8888	0.9887	yes	no
Q6FUJ0	DYL1_CANGA	No assigned EC number	0.3647	0.8383	0.9651	yes	no
Q9UR05	DYL1_SCHPO	No assigned EC number	0.4823	0.8383	0.9764	yes	no
Q86A88	DYL_DICDI	No assigned EC number	0.3975	0.8181	0.8901	yes	no
O94111	DYL1_EMENI	No assigned EC number	0.4634	0.8080	0.8510	yes	no
P63170	DYL1_RAT	No assigned EC number	0.4777	0.8888	0.9887	yes	no
P61285	DYL1_BOVIN	No assigned EC number	0.4777	0.8888	0.9887	yes	no
Q24117	DYL1_DROME	No assigned EC number	0.4777	0.8888	0.9887	yes	no
Q759T0	DYL1_ASHGO	No assigned EC number	0.3571	0.8282	0.9318	yes	no
Q6BZF8	DYL1_DEBHA	No assigned EC number	0.3793	0.8585	0.9340	yes	no
P63167	DYL1_HUMAN	No assigned EC number	0.4777	0.8888	0.9887	yes	no
Q02647	DYL1_YEAST	No assigned EC number	0.3614	0.8181	0.8804	yes	no
O96860	DYL2_DROME	No assigned EC number	0.4777	0.8888	0.9887	yes	no
P63168	DYL1_MOUSE	No assigned EC number	0.4777	0.8888	0.9887	yes	no
P63169	DYL1_RABIT	No assigned EC number	0.4777	0.8888	0.9887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_III0116 hypothetical protein (94 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	99
pfam01221	86	pfam01221, Dynein_light, Dynein light chain type 1	3e-38
PTZ00059	90	PTZ00059, PTZ00059, dynein light chain; Provisiona	5e-27
PLN03058	128	PLN03058, PLN03058, dynein light chain type 1 fami	4e-19

>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1

 Score =  122 bits (308), Expect = 3e-38
 Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 2/88 (2%)

Query: 4  GKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSN 63
          GKA++++ DMP +MQ  A+  A++AL+ ++V   K IAAHIKKEFDK+YG  W C+VG N
Sbjct: 1  GKAVVKNADMPEEMQEDAIECAAEALEKFNVE--KDIAAHIKKEFDKKYGPTWHCIVGKN 58

Query: 64 FGCFFTHTEGTFIYFQLETLKFLIFKGS 91
          FG + TH    FIYF +  L FL+FK  
Sbjct: 59 FGSYVTHETKHFIYFYIGQLAFLLFKTG 86

Length = 86

>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional

 Score = 94.5 bits (235), Expect = 5e-27
 Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA++++ DM   MQ  A+  A+QAL+ +++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 2  MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIV 59

Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 60 GRNFGSYVTHETKHFIYFYLGQVAILLFK 88

Length = 90

>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein; Provisional

 Score = 75.4 bits (185), Expect = 4e-19
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 11  TDMPVKMQLYAMASASQALDVY-DVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFT 69
           +DMP+ +Q  A + A   LD      D K +A  +KKEFD  YG  W C+VG++FG + T
Sbjct: 41  SDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVT 100

Query: 70  HTEGTFIYFQLETLKFLIFKGSSSP 94
           H+ G F+YF ++ +  L+FK +  P
Sbjct: 101 HSTGGFLYFSIDKVYILLFKTAVEP 125

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
KOG3430	90	consensus Dynein light chain type 1 [Cytoskeleton]	100.0
PTZ00059	90	dynein light chain; Provisional	100.0
PF01221	89	Dynein_light: Dynein light chain type 1 ; InterPro	100.0
PLN03058	128	dynein light chain type 1 family protein; Provisio	100.0
PF04155	76	Ground-like: Ground-like domain; InterPro: IPR0072	97.66
PF05075	345	DUF684: Protein of unknown function (DUF684); Inte	92.4
PF15650	89	Tox-REase-9: Restriction endonuclease fold toxin 9	81.74
PF12006	313	DUF3500: Protein of unknown function (DUF3500); In	81.48

>KOG3430 consensus Dynein light chain type 1 [Cytoskeleton]

Probab=100.00  E-value=1.5e-42  Score=218.95  Aligned_cols=90  Identities=54%  Similarity=0.900  Sum_probs=86.6

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278            1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL   80 (99)
Q Consensus         1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~   80 (99)
                      |.+.+++|+.+||+++||++|+++|+.|+++|+. +.++||..||++||++||++||||||++|||+|||++++||||++
T Consensus         1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~-~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~   79 (90)
T KOG3430|consen    1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNV-IEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYL   79 (90)
T ss_pred             CCCccceEecCCCChHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEe
Confidence            7889999999999999999999999999999995 339999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeecC
Q 034278           81 ETLKFLIFKGS   91 (99)
Q Consensus        81 ~~~~vLifkt~   91 (99)
                      |.++|||||+.
T Consensus        80 g~l~illfK~~   90 (90)
T KOG3430|consen   80 GVLAILLFKCA   90 (90)
T ss_pred             ceEEEEEEecC
Confidence            99999999984

>PTZ00059 dynein light chain; Provisional

Probab=100.00  E-value=1.1e-41  Score=217.60  Aligned_cols=89  Identities=46%  Similarity=0.816  Sum_probs=86.8

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278            1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL   80 (99)
Q Consensus         1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~   80 (99)
                      |++++++|+.+|||++||++|+++|.+|+++|+.+  +|||++||++||++|||+||||||++|||++||++++||||++
T Consensus         2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~--kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~   79 (90)
T PTZ00059          2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYL   79 (90)
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCch--HHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEE
Confidence            78889999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeecC
Q 034278           81 ETLKFLIFKGS   91 (99)
Q Consensus        81 ~~~~vLifkt~   91 (99)
                      |+++|||||++
T Consensus        80 ~~~~vLlfK~~   90 (90)
T PTZ00059         80 GQVAILLFKSG   90 (90)
T ss_pred             CCEEEEEEecC
Confidence            99999999985

>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=1e-40  Score=212.08  Aligned_cols=89  Identities=47%  Similarity=0.823  Sum_probs=84.6

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278            1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL   80 (99)
Q Consensus         1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~   80 (99)
                      |++.+++|+.+||+++||++|+++|.+|+++++++  +++|++||++||++|||+||||||++|||++||++++++||++
T Consensus         1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~--~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~   78 (89)
T PF01221_consen    1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDE--KEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKI   78 (89)
T ss_dssp             SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEE
Confidence            89999999999999999999999999999999977  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeecC
Q 034278           81 ETLKFLIFKGS   91 (99)
Q Consensus        81 ~~~~vLifkt~   91 (99)
                      ++++||||||+
T Consensus        79 ~~~~~li~kt~   89 (89)
T PF01221_consen   79 GNIAFLIFKTQ   89 (89)
T ss_dssp             TTEEEEEEEE-
T ss_pred             CCEEEEEEecC
Confidence            99999999985

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....

>PLN03058 dynein light chain type 1 family protein; Provisional

Probab=100.00  E-value=3.5e-40  Score=221.90  Aligned_cols=93  Identities=38%  Similarity=0.759  Sum_probs=87.6

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHhhcCc-cCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeC
Q 034278            3 EGKALIEDTDMPVKMQLYAMASASQALDVYDV-FDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLE   81 (99)
Q Consensus         3 ~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~-~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~   81 (99)
                      +.+++|+.+|||++||++|+++|.+|+++++. .+.++||.+||++||++|||+||||||++|||+|||++++||||++|
T Consensus        33 ~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig  112 (128)
T PLN03058         33 ELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSID  112 (128)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEEC
Confidence            46899999999999999999999999999863 23489999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeecCCCCC
Q 034278           82 TLKFLIFKGSSSPP   95 (99)
Q Consensus        82 ~~~vLifkt~~~~~   95 (99)
                      +++||||||+..|.
T Consensus       113 ~~aiLLfKt~~~~~  126 (128)
T PLN03058        113 KVYILLFKTAVEPL  126 (128)
T ss_pred             CEEEEEEeccCccC
Confidence            99999999999985

>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae

Probab=97.66  E-value=0.00075  Score=41.32  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEee
Q 034278           36 DCKSIAAHIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFK   89 (99)
Q Consensus        36 ~~~~iA~~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifk   89 (99)
                      ++.++++.|.+.++++||+.+-||+++ +|.....+. ..|--...++...++|+
T Consensus        23 ~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~   76 (76)
T PF04155_consen   23 NLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA   76 (76)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence            458999999999999999999999999 776666655 77888899999999985

It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].

>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans

Probab=92.40  E-value=1.4  Score=34.05  Aligned_cols=54  Identities=19%  Similarity=0.367  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhhcccCCC-ceEEEEeC--------CcceeEEEcCCcEEE-EEeCCEEEEEeecC
Q 034278           38 KSIAAHIKKEFDKRYGG-GWQCVVGS--------NFGCFFTHTEGTFIY-FQLETLKFLIFKGS   91 (99)
Q Consensus        38 ~~iA~~iK~~lD~~yg~-~WhcIVG~--------~Fgs~vth~~~~~i~-F~~~~~~vLifkt~   91 (99)
                      .+.|..||+.||+-... .+-+||-.        .|.....+..+.+|. |.-|+..++||||.
T Consensus       189 ~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS~  252 (345)
T PF05075_consen  189 EEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRSK  252 (345)
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEeeC
Confidence            78999999999997643 68888822        112222345666666 67899999999993

>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9

Probab=81.74  E-value=1.3  Score=28.23  Aligned_cols=18  Identities=44%  Similarity=1.016  Sum_probs=15.4

Q ss_pred             HHHhhcccCCCceEEEEe
Q 034278           44 IKKEFDKRYGGGWQCVVG   61 (99)
Q Consensus        44 iK~~lD~~yg~~WhcIVG   61 (99)
                      -|++|...||.+|.|||-
T Consensus        70 Y~~el~~~~G~~W~~~l~   87 (89)
T PF15650_consen   70 YKQELEKIYGGGWKTRLE   87 (89)
T ss_pred             HHHHhcCccCCCeeEEee
Confidence            457899999999999973

>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised

Probab=81.48  E-value=11  Score=28.85  Aligned_cols=51  Identities=14%  Similarity=0.072  Sum_probs=33.3

Q ss_pred             EEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhh-cccCCCceEEEEeC
Q 034278            8 IEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEF-DKRYGGGWQCVVGS   62 (99)
Q Consensus         8 V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~l-D~~yg~~WhcIVG~   62 (99)
                      |..++|+.+.|+.+..++..-+..++.+    .|+..-+.+ ...++.+|-+-+|.
T Consensus       216 l~~s~Lt~~Qq~ll~~li~~y~~~~~~~----~a~~~~~~i~~~~ld~t~faW~G~  267 (313)
T PF12006_consen  216 LAVSELTADQQELLLALIKEYLGRLPEE----DAAERMAEIEEAGLDETYFAWAGG  267 (313)
T ss_pred             cChhhCCHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHhccccceEEEEecC
Confidence            5678999999999999999988888743    333322223 33344445554544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1f3c_A	89	Refined Solution Structure Of 8kda Dynein Light Cha		1e-18
1cmi_A	85	Structure Of The Human PinLC8 DIMER WITH A BOUND PE		5e-18
1rhw_A	89	The Solution Structure Of The Ph-Induced Monomer Of		7e-18
2pg1_A	91	Structural Analysis Of A Cytoplasmic Dynein Light C		7e-18
3brl_A	89	Crystal Structure Of Lc8 S88e SWA Length = 89		7e-18
1pwj_A	89	Structure Of The Monomeric 8-Kda Dynein Light Chain		2e-17
3p8m_A	92	Human Dynein Light Chain (Dynll2) In Complex With A		2e-17
1re6_A	94	Localisation Of Dynein Light Chains 1 And 2 And The		2e-17
1yo3_A	102	1.65 Angstrom Structure Of The Dynein Light Chain 1		3e-17
3dvh_A	91	Lc8 Point Mutant K36p Length = 91		3e-17
3rjs_A	89	Crystal Structure Of Dynein Light Chain 8a (Dlc8) F		4e-17
1pwk_A	91	Structure Of The Monomeric 8-Kda Dynein Light Chain		6e-16
4ds1_A	97	The Structure Of A Yeast Dyn2-Nup159 Complex And Th		3e-12

>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain (Dlc8) Length = 89

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+V
Sbjct: 1  MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE Length = 85

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 57/86 (66%), Gaps = 2/86 (2%)
Query: 5  KALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNF 64
          KA+I++ DM  +MQ  ++  A+QAL+ Y++   K IAAHIKKEFDK+Y   W C+VG NF
Sbjct: 1  KAVIKNADMSEEMQQDSVECATQALEKYNIE--KDIAAHIKKEFDKKYNPTWHCIVGRNF 58
Query: 65 GCFFTHTEGTFIYFQLETLKFLIFKG 90
          G + TH    FIYF L  +  L+FK 
Sbjct: 59 GSYVTHETKHFIYFYLGQVAILLFKS 84

>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein Light Chain Lc8 From Drosophila Length = 89

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 88

>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain- Intermediate Chain Complex Length = 91

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA Length = 89

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 59 GRNFGSYVTHETRHFIYFYLGQVAILLFK 87

>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 89

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM   MQ  A+  A+QA++ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 59 GRNFGSYVTHETKHFIYFYLGQVAILLFKS 88

>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In Vitro Evolved Peptide Dimerized By Leucine Zipper Length = 92

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM   MQ  A+  A+QA++ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 4  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 61
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 62 GRNFGSYVTHETKHFIYFYLGQVAILLFK 90

>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro- Apoptotic Ligands Length = 94

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM   MQ  A+  A+QA++ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 6  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 63
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
          G NFG + TH    FIYF L  +  L+FK
Sbjct: 64 GRNFGSYVTHETKHFIYFYLGQVAILLFK 92

>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From Plasmodium Falciparum Length = 102

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 6   ALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFG 65
           +++++ DM  +MQ+ A+  A+QAL  Y+V   K IAAHIKKEFD++Y   W CVVG NFG
Sbjct: 19  SVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFG 76
Query: 66  CFFTHTEGTFIYFQLETLKFLIFK 89
            + TH    FIYF +  +  L+FK
Sbjct: 77  SYVTHETKNFIYFYIGQVAILLFK 100

>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p Length = 91

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM  +MQ  A+  A+QAL+ Y++     IAA+IKKEFDK+Y   W C+V
Sbjct: 3  MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--PDIAAYIKKEFDKKYNPTWHCIV 60
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF L  +  L+FK 
Sbjct: 61 GRNFGSYVTHETRHFIYFYLGQVAILLFKS 90

>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From Toxoplasma Gondii At 1.5 A Resolution Length = 89

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DMP  +Q  A+  A+QAL+ Y++   K IAA IKKEFD+++   W CVV
Sbjct: 1  MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVV 58
Query: 61 GSNFGCFFTHTEGTFIYFQLETLKFLIFKG 90
          G NFG + TH    FIYF +  +  L+FK 
Sbjct: 59 GRNFGSYVTHETHHFIYFYIGQVAVLLFKS 88

>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And Mechanism Of Domain Swapped Dimer Assembly Length = 91

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Query: 1  MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
          M + KA+I++ DM   MQ  A+  A+QA++ Y++   K IAA+IKKEFDK+Y   W C+V
Sbjct: 1  MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIE--KDIAAYIKKEFDKKYNPTWHCIV 58
Query: 61 GS--NFGCFFTHTEGTFIYFQLETLKFLIFK 89
          G   NFG + TH    FIYF L  +  L+FK
Sbjct: 59 GRSGNFGSYVTHETKHFIYFYLGQVAILLFK 89

>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The Molecular Basis For The Dynein Light Chain - Nuclear Pore Interaction Length = 97

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 7  LIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGC 66
          +++ +D+  K++   +  +  ALD Y +   + IA  +KK+ D +YG  W  +VG NFG 
Sbjct: 15 IVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGKNFGS 72
Query: 67 FFTHTEGTFIYFQLETLKFLIFK 89
          + TH +G F+YF +  L FL+FK
Sbjct: 73 YVTHEKGHFVYFYIGPLAFLVFK 95

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	5e-35
1yo3_A	102	Dynein light chain 1; structural genomics consorti	5e-35

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae} Length = 97

 Score =  114 bits (287), Expect = 5e-35
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 3  EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGS 62
          +   +++ +D+  K++   +  +  ALD Y +   + IA  +KK+ D +YG  W  +VG 
Sbjct: 11 KSTPIVKASDITDKLKEDILTISKDALDKYQL--ERDIAGTVKKQLDVKYGNTWHVIVGK 68

Query: 63 NFGCFFTHTEGTFIYFQLETLKFLIFKGS 91
          NFG + TH +G F+YF +  L FL+FK +
Sbjct: 69 NFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ... Length = 102

 Score =  114 bits (287), Expect = 5e-35
 Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 1   MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVV 60
           ++   +++++ DM  +MQ+ A+  A+QAL  Y+V   K IAAHIKKEFD++Y   W CVV
Sbjct: 14  LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNV--EKDIAAHIKKEFDRKYDPTWHCVV 71

Query: 61  GSNFGCFFTHTEGTFIYFQLETLKFLIFK 89
           G NFG + TH    FIYF +  +  L+FK
Sbjct: 72  GRNFGSYVTHETKNFIYFYIGQVAILLFK 100

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3rjs_A	89	Dynein light chain motor protein; parasite, LC8, D	100.0
4ds1_A	97	Dynein light chain 1, cytoplasmic; dynein light ch	100.0
1yo3_A	102	Dynein light chain 1; structural genomics consorti	100.0
1use_A	45	VAsp, vasodilator-stimulated phosphoprotein; signa	83.11

>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...

Probab=100.00  E-value=2e-44  Score=228.81  Aligned_cols=89  Identities=46%  Similarity=0.815  Sum_probs=85.7

Q ss_pred             CCCCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEe
Q 034278            1 MLEGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQL   80 (99)
Q Consensus         1 M~~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~   80 (99)
                      |++++++|+.+|||++||++|+++|.+|+++|+.+  +|||++||++||++|||+||||||++|||+|||++++||||++
T Consensus         1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~   78 (89)
T 3rjs_A            1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIE--KDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYI   78 (89)
T ss_dssp             --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcH--HHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEE
Confidence            88999999999999999999999999999999987  9999999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeecC
Q 034278           81 ETLKFLIFKGS   91 (99)
Q Consensus        81 ~~~~vLifkt~   91 (99)
                      |+++||||||+
T Consensus        79 g~~~iLlfKtg   89 (89)
T 3rjs_A           79 GQVAVLLFKSG   89 (89)
T ss_dssp             TTEEEEEEEEC
T ss_pred             CCEEEEEEecC
Confidence            99999999986

>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-42  Score=222.73  Aligned_cols=86  Identities=35%  Similarity=0.764  Sum_probs=84.2

Q ss_pred             CCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCCE
Q 034278            4 GKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLETL   83 (99)
Q Consensus         4 ~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~~   83 (99)
                      ++++|+.+||+++||++|+++|.+|+++++.+  ++||++||++||++|||+||||||++|||+|||++++||||++|++
T Consensus        12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~e--k~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~   89 (97)
T 4ds1_A           12 STPIVKASDITDKLKEDILTISKDALDKYQLE--RDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPL   89 (97)
T ss_dssp             CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTE
T ss_pred             CccEEEECCCCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCE
Confidence            78999999999999999999999999999977  9999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecC
Q 034278           84 KFLIFKGS   91 (99)
Q Consensus        84 ~vLifkt~   91 (99)
                      +||||||+
T Consensus        90 aiLlfKtg   97 (97)
T 4ds1_A           90 AFLVFKTA   97 (97)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99999986

>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...

Probab=100.00  E-value=1.3e-41  Score=220.66  Aligned_cols=87  Identities=46%  Similarity=0.841  Sum_probs=83.2

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCC
Q 034278            3 EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLET   82 (99)
Q Consensus         3 ~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~   82 (99)
                      .++++|+.+||+++||++|+++|.+|+++|+.+  ++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus        16 ~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~e--kdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~   93 (102)
T 1yo3_A           16 PRGSVVKNVDMTEEMQIDAIDCANQALQKYNVE--KDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ   93 (102)
T ss_dssp             --CCCEEETTSCHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence            468999999999999999999999999999977  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecC
Q 034278           83 LKFLIFKGS   91 (99)
Q Consensus        83 ~~vLifkt~   91 (99)
                      ++||||||+
T Consensus        94 ~aiLlfKt~  102 (102)
T 1yo3_A           94 VAILLFKSG  102 (102)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999985

>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A

Probab=83.11  E-value=1.6  Score=23.63  Aligned_cols=34  Identities=15%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccC
Q 034278           15 VKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRY   52 (99)
Q Consensus        15 ~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~y   52 (99)
                      +.++++|++..+.-+++.+    ++|-+.|+++|.++.
T Consensus        10 e~~KqEIL~E~RkElqK~K----~EIIeAi~~El~~~~   43 (45)
T 1use_A           10 QRVKQELLEEVKKELQKVK----EEIIEAFVQELRKRG   43 (45)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcC
Confidence            4588999999999999887    579999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d3e2ba1	87	d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fru	7e-34

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 87

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  110 bits (276), Expect = 7e-34
 Identities = 42/87 (48%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 3  EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGS 62
          + KA+I++ DM  +MQ  A+  A+QAL+ Y++   K IAA+IKKEFDK+Y   W C+VG 
Sbjct: 1  DRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIVGR 58

Query: 63 NFGCFFTHTEGTFIYFQLETLKFLIFK 89
          NFG + TH    FIYF L  +  L+FK
Sbjct: 59 NFGSYVTHETRHFIYFYLGQVAILLFK 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d3e2ba1	87	Dynein light chain 1 (DLC1) {Fruit fly (Drosophila	100.0
d1ulia1	154	Biphenyl dioxygenase large subunit BphA1, N-termin	80.29

>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: DLC
superfamily: DLC
family: DLC
domain: Dynein light chain 1 (DLC1)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=8e-43  Score=219.16  Aligned_cols=87  Identities=48%  Similarity=0.842  Sum_probs=84.8

Q ss_pred             CCCceEEeCCCCHHHHHHHHHHHHHHHhhcCccCHHHHHHHHHHhhcccCCCceEEEEeCCcceeEEEcCCcEEEEEeCC
Q 034278            3 EGKALIEDTDMPVKMQLYAMASASQALDVYDVFDCKSIAAHIKKEFDKRYGGGWQCVVGSNFGCFFTHTEGTFIYFQLET   82 (99)
Q Consensus         3 ~~~~~V~~~dM~~~~q~~~~~~a~~a~~~~~~~~~~~iA~~iK~~lD~~yg~~WhcIVG~~Fgs~vth~~~~~i~F~~~~   82 (99)
                      +++++|+.+|||++||++|+++|.+|+++|+.+  +|+|++||++||++|||+||||||++|||++||++++|+||++|+
T Consensus         1 e~k~vik~~DM~~em~~~a~~~~~~al~~~~~~--~diA~~IK~~~D~kyg~~WhcIVG~~Fgs~vthe~~~~i~F~~g~   78 (87)
T d3e2ba1           1 DRKAVIKNADMSEEMQQDAVDCATQALEKYNIE--KDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQ   78 (87)
T ss_dssp             CCCEEEEEEEECHHHHHHHHHHHHHHHHHCCSH--HHHHHHHHHHHHHHHCSCEEEEEESSCEEEEEEETTEEEEEEETT
T ss_pred             CCcceEEECCCCHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhhCCccEEEECCCeeEEEEecCCcEEEEEECC
Confidence            578999999999999999999999999999987  999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeecC
Q 034278           83 LKFLIFKGS   91 (99)
Q Consensus        83 ~~vLifkt~   91 (99)
                      ++||||||+
T Consensus        79 ~~~Ll~Ktg   87 (87)
T d3e2ba1          79 VAILLFKSG   87 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            999999996

>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]}

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Ring hydroxylating alpha subunit ISP domain
domain: Biphenyl dioxygenase large subunit BphA1, N-terminal domain
species: Rhodococcus sp. (strain RHA1) [TaxId: 101510]

Probab=80.29  E-value=2.5  Score=26.22  Aligned_cols=46  Identities=11%  Similarity=0.321  Sum_probs=34.4

Q ss_pred             HHHHhhcccCCCceEEEEeC-CcceeEEEcCCcEEEEEeCCEEEEEeecCCC
Q 034278           43 HIKKEFDKRYGGGWQCVVGS-NFGCFFTHTEGTFIYFQLETLKFLIFKGSSS   93 (99)
Q Consensus        43 ~iK~~lD~~yg~~WhcIVG~-~Fgs~vth~~~~~i~F~~~~~~vLifkt~~~   93 (99)
                      ....++++-|.+.|++|.=. ..-     ++|.++-+.+++..+||+|..+-
T Consensus        27 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~ilv~R~~~g   73 (154)
T d1ulia1          27 LYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQKNG   73 (154)
T ss_dssp             HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECTTS
T ss_pred             HHHHHHHHHhccCCEEEEEhhhCC-----CCcceeeeecCCcceeEEeeccc
Confidence            45566777789999998643 221     45678889999999999998753