Citrus Sinensis ID: 034302

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK
Secondary Structure (PSIPRED)
ccccccEEccccEEEEEEccccccccccHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHccccccEEEEEEcccccccccHHHccHHHHHHHHccHccccccccHHHHHcccccccccccccccccccEEcccccccccccccHHHHccc
Coil and Loop (DISEMBL)
maslpiisfapATVRVYAATAAkeaggskeEKSLLDWILGgmqkqdqfyetdpilkkvedksppsgrgttngrknsasvpqpqkkkggfglgdlfakk
Flexible Loop (DISEMBL)
maslpiisfapaTVRVYAATAakeaggskeeKSLLDWILGGMQKQDQFYETDPilkkvedksppsgrgttngrknsasvpqpqkkkggfglgdlfakk
Low Complexity Region (SEG)
MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKNSASVPQPQkkkggfglgdlfakk
Disordered region (IsUnstruct)
*****IISFAPATVRVYAATA************LLDWILGGMQKQDQFY*************************************************
Disordered Region (DISOPRED)
********FAPATVRV******************LDWILGGMQKQDQFYETDPIL************************************GDLFAK*
Disordered Region (DISEMBL)
MASLPIISFAPATVRVYAAT***********KSLLDWILGGMQKQDQFYETDPILKKVE***********************QKKKGGFGLGDLFAKK
Disordered Region (DISPRO)
**SLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVE*****************AS********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
224104307	90	predicted protein [Populus trichocarpa]	0.755	0.822	0.728	4e-22
255569279	94	conserved hypothetical protein [Ricinus	0.959	1.0	0.724	4e-21
147856054	287	hypothetical protein VITISV_028924 [Viti	0.897	0.306	0.642	1e-20
449450924	97	PREDICTED: uncharacterized protein LOC10	0.948	0.958	0.623	2e-20
356566165	92	PREDICTED: uncharacterized protein LOC10	0.928	0.989	0.701	2e-20
225434658	88	PREDICTED: uncharacterized protein LOC10	0.897	1.0	0.642	2e-20
297819314	100	hypothetical protein ARALYDRAFT_905937 [	0.867	0.85	0.604	5e-19
224054560	92	predicted protein [Populus trichocarpa]	0.918	0.978	0.701	2e-17
356539609	92	PREDICTED: uncharacterized protein LOC10	0.928	0.989	0.680	1e-16
27529048	103	thylakoid soluble phosphoprotein [Spinac	1.0	0.951	0.480	3e-16

>gi|224104307|ref|XP_002313390.1| predicted protein [Populus trichocarpa] gi|222849798|gb|EEE87345.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/81 (72%), Positives = 69/81 (85%), Gaps = 7/81 (8%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MASLPI+ FA  +VRVYAATA+   GGSKEEK LLDWILG +QK+DQFYETDPILKKVE+
Sbjct: 1  MASLPIV-FASPSVRVYAATAS---GGSKEEKGLLDWILGSLQKEDQFYETDPILKKVEE 56

Query: 61 KSPPSGRGTTNGRKNSASVPQ 81
          K+  SG GTT+GR+NS +VPQ
Sbjct: 57 KN--SG-GTTSGRRNSVAVPQ 74

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569279|ref|XP_002525607.1| conserved hypothetical protein [Ricinus communis] gi|223535043|gb|EEF36725.1| conserved hypothetical protein [Ricinus communis]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 79/98 (80%), Gaps = 4/98 (4%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MASLPI +FA  TVRVYAATAAK AGGSKEEK  LDW+LG + K+DQFYETDPILKKVE+
Sbjct: 1  MASLPI-AFAAPTVRVYAATAAKGAGGSKEEKGFLDWVLGNLTKEDQFYETDPILKKVEE 59

Query: 61 KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK 98
          KS  SG GTT+GRKNS S+PQ +K  G  G G LFAKK
Sbjct: 60 KS--SG-GTTSGRKNSVSIPQKKKNGGFGGFGGLFAKK 94

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856054|emb|CAN78614.1| hypothetical protein VITISV_028924 [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 1   MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
           MASL I +FAPA  RV+AATA K +GGS E K +LDWILGG+QK+DQ  ETDPILKKVE+
Sbjct: 200 MASLTI-AFAPAAGRVFAATAEKSSGGSGE-KGILDWILGGLQKEDQMLETDPILKKVEE 257

Query: 61  KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK 98
           K+     G+  GRKNS  V  P KKKGGF  G LFAKK
Sbjct: 258 KNG----GSNGGRKNSVVV--PPKKKGGF--GGLFAKK 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450924|ref|XP_004143212.1| PREDICTED: uncharacterized protein LOC101205268 [Cucumis sativus] gi|449496590|ref|XP_004160173.1| PREDICTED: uncharacterized protein LOC101232525 [Cucumis sativus]

 Score =  103 bits (256), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/101 (62%), Positives = 73/101 (72%), Gaps = 8/101 (7%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MASLPI +F+PA  RV+AATAAK AG SK+EK LLDWI+G + K DQ  ETDP+L+KVE 
Sbjct: 1  MASLPI-AFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEG 58

Query: 61 KSPPSGRGTTN---GRKNSASVPQPQKKKGGFGLGDLFAKK 98
          K   SG GT +   GRKNS  VP P+K  GGF  G LFAKK
Sbjct: 59 KDAASGNGTGSVRGGRKNSVQVP-PKKNGGGF--GGLFAKK 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566165|ref|XP_003551305.1| PREDICTED: uncharacterized protein LOC100788940 [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 77/97 (79%), Gaps = 6/97 (6%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MAS+ I+SFAPAT RV+AATAAK AGGSKEEK LLDWILGG+QK+DQ  ETDPILKKVE+
Sbjct: 1  MASI-IMSFAPATGRVFAATAAKGAGGSKEEKGLLDWILGGLQKEDQLLETDPILKKVEE 59

Query: 61 KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAK 97
          K   +G  T+N  +N  SV  PQKKKGGF  G LFAK
Sbjct: 60 K---NGGTTSNTGRNKNSVAVPQKKKGGF--GGLFAK 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434658|ref|XP_002280087.1| PREDICTED: uncharacterized protein LOC100265554 isoform 1 [Vitis vinifera]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/98 (64%), Positives = 72/98 (73%), Gaps = 10/98 (10%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MASL  I+FAPA  RV+AATA K +GGS E K +LDWILGG+QK+DQ  ETDPILKKVE+
Sbjct: 1  MASL-TIAFAPAAGRVFAATAEKSSGGSGE-KGILDWILGGLQKEDQMLETDPILKKVEE 58

Query: 61 KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAKK 98
          K+     G+  GRKNS  V  P KKKGGF  G LFAKK
Sbjct: 59 KNG----GSNGGRKNSVVV--PPKKKGGF--GGLFAKK 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819314|ref|XP_002877540.1| hypothetical protein ARALYDRAFT_905937 [Arabidopsis lyrata subsp. lyrata] gi|297323378|gb|EFH53799.1| hypothetical protein ARALYDRAFT_905937 [Arabidopsis lyrata subsp. lyrata]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 63/86 (73%), Gaps = 1/86 (1%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          M S  ++SFAPATVRVYA      +GG+KEEK+ +D++LG M KQDQFYET+PILKKVE+
Sbjct: 1  MVSSLLMSFAPATVRVYATGTKGASGGAKEEKNPIDFVLGFMTKQDQFYETNPILKKVEE 60

Query: 61 KSPPSG-RGTTNGRKNSASVPQPQKK 85
          K   +G RGT  G KNSA  P P KK
Sbjct: 61 KEGTTGSRGTVRGGKNSAPTPVPPKK 86

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054560|ref|XP_002298321.1| predicted protein [Populus trichocarpa] gi|118487200|gb|ABK95428.1| unknown [Populus trichocarpa] gi|222845579|gb|EEE83126.1| predicted protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/97 (70%), Positives = 77/97 (79%), Gaps = 7/97 (7%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MASLPI +FA  +VRVYAATAAK AGG KEEK LLDWI+G +QK+DQFYETDPILKKVE 
Sbjct: 1  MASLPI-AFAVPSVRVYAATAAKGAGGGKEEKGLLDWIIGSLQKEDQFYETDPILKKVEG 59

Query: 61 KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAK 97
          K   +  GT +GRKNS +VPQ +KK GGF  G LFAK
Sbjct: 60 K---NNGGTASGRKNSVAVPQ-KKKSGGF--GGLFAK 90

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539609|ref|XP_003538289.1| PREDICTED: uncharacterized protein LOC100789683 [Glycine max]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/97 (68%), Positives = 76/97 (78%), Gaps = 6/97 (6%)

Query: 1  MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
          MAS+ I+SFAPAT RV+AATAAK AGGSKE K LLDWI+GG+QK+DQ  ETDPILKKVE+
Sbjct: 1  MASI-IMSFAPATGRVFAATAAKGAGGSKE-KGLLDWIIGGLQKEDQLVETDPILKKVEE 58

Query: 61 KSPPSGRGTTNGRKNSASVPQPQKKKGGFGLGDLFAK 97
          K+  +   TT   KNS +V  PQKKKGGF  G LFAK
Sbjct: 59 KNGGTTTTTTGRNKNSVAV--PQKKKGGF--GGLFAK 91

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27529048|emb|CAD45559.1| thylakoid soluble phosphoprotein [Spinacia oleracea]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 1   MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILK--KV 58
           M+SLP +  A A+ RV  A AAK    +K+EKS +DW+LG + K+DQFYETDPIL+   V
Sbjct: 1   MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 60

Query: 59  EDKSPPSGR--GTTNGRKNSASVPQPQKKKGGFGLGDLFAKK 98
           +     SG+  GTT+G+K + S+P  +K   G   G LFAKK
Sbjct: 61  KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKK 102

Source: Spinacia oleracea

Species: Spinacia oleracea

Genus: Spinacia

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2075596	100	AT3G47070 [Arabidopsis thalian	0.846	0.83	0.564	7.2e-20

TAIR|locus:2075596 AT3G47070 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 48/85 (56%), Positives = 62/85 (72%)

Query:     1 MASLPIISFAPATVRVYAATAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVED 60
             M S  ++SFAPATVRVYA +    +GG KEEK+ +D++LG M KQDQFYET+P+LKKV++
Sbjct:     1 MVSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDE 60

Query:    61 K--SPPSGRGTTNGRKNSASVPQPQ 83
             K  +   GRGT  G KNSA  P P+
Sbjct:    61 KEGTTTGGRGTVRGGKNSAPTPVPK 85


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.126   0.357    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       98        83   0.00091  102 3  11 23  0.38    30
                                                     29  0.44    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  503 (54 KB)
  Total size of DFA:  93 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.01u 0.15s 11.16t   Elapsed:  00:00:01
  Total cpu time:  11.01u 0.15s 11.16t   Elapsed:  00:00:01
  Start:  Fri May 10 20:31:00 2013   End:  Fri May 10 20:31:01 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=ISS;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam11493	80	pfam11493, TSP9, Thylakoid soluble phosphoprotein	2e-13

>gnl|CDD|151930 pfam11493, TSP9, Thylakoid soluble phosphoprotein TSP9

 Score = 59.6 bits (144), Expect = 2e-13
 Identities = 43/82 (52%), Positives = 52/82 (63%), Gaps = 8/82 (9%)

Query: 21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKNSASVP 80
              +  +KEEKSL+D+ILG + K+DQFYETDPIL KV++KSP    G+T GRK  A  P
Sbjct: 2  TKGGSAEAKEEKSLVDFILGFITKEDQFYETDPILNKVDEKSP---SGSTVGRKAPAKKP 58

Query: 81 QPQKKK-----GGFGLGDLFAK 97
               K     GGF LG LFAK
Sbjct: 59 AKSAAKEEGGGGGFNLGGLFAK 80

The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PF11493	80	TSP9: Thylakoid soluble phosphoprotein TSP9; Inter	100.0
KOG4462	437	consensus WASP-interacting protein VRP1/WIP, conta	81.92

>PF11493 TSP9: Thylakoid soluble phosphoprotein TSP9; InterPro: IPR021584 The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane

Probab=100.00  E-value=4.2e-35  Score=200.13  Aligned_cols=74  Identities=59%  Similarity=0.916  Sum_probs=24.9

Q ss_pred             cccccCCcchhhhhHHHHHhhhccccceeeccchhhcccCCCCCCCCCcCCCCCCCCCcCCCc--ccCC-CCc--ccccc
Q 034302           21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGRGTTNGRKNSASVPQPQ--KKKG-GFG--LGDLF   95 (98)
Q Consensus        21 a~~~~a~~keEKgl~D~I~G~l~KedQ~~ETDPiL~Kv~~k~~~~grGt~~gkk~~~~~~~p~--kkk~-GGG--fGGLF   95 (98)
                      +++++++++|||||+|||||+|||||||||||||||||++++++   |++++||++++.++.+  ++++ +||  |||||
T Consensus         2 t~~~~~~~keEKgl~D~I~G~l~KedQl~ETDPiL~Kv~~k~~~---g~t~~~k~~~~~~kk~~~~~~gG~GGf~lGgLF   78 (80)
T PF11493_consen    2 TAGGAGPAKEEKGLLDWILGALQKEDQLLETDPILNKVEEKNPS---GSTRGKKAGTAAGKKKAAKKKGGFGGFSLGGLF   78 (80)
T ss_dssp             ------------SHHHHHHHHHS----S--S--SSS-S---------S-------S-S-S--SSSS-S--S--S-SSSSS
T ss_pred             CCCCCCCccccccHHHHHhhhhhhhhhhcccchhhhcccccccC---CCCCCCcccccCCccccccccCCCCcccccccc
Confidence            34578999999999999999999999999999999999999877   3555666655553222  3343 377  79999


Q ss_pred             cc
Q 034302           96 AK   97 (98)
Q Consensus        96 aK   97 (98)
                      +|
T Consensus        79 aK   80 (80)
T PF11493_consen   79 AK   80 (80)
T ss_dssp             --
T ss_pred             cC
Confidence            97

The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil []. ; PDB: 2FFT_A.

>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]

Probab=81.92  E-value=2.2  Score=37.08  Aligned_cols=29  Identities=31%  Similarity=0.370  Sum_probs=20.3

Q ss_pred             hHHHHHhhhcccccee--ecc----chhhcccCCC
Q 034302           34 LLDWILGGMQKQDQFY--ETD----PILKKVEDKS   62 (98)
Q Consensus        34 l~D~I~G~l~KedQ~~--ETD----PiL~Kv~~k~   62 (98)
                      =-|-|++-|+|--.|-  +||    |||-|+-+.+
T Consensus        30 gR~ALL~DI~KG~KLKK~~tNDRSAPivgk~vgs~   64 (437)
T KOG4462|consen   30 GRNALLGDIQKGKKLKKATTNDRSAPIVGKGVGSS   64 (437)
T ss_pred             chHHHHHHhhhcceecceeccccccccccCccccc
Confidence            4578889898876654  444    7887776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
2fft_A	84	Nmr Structure Of Spinach Thylakoid Soluble Phosphop		5e-11

>pdb|2FFT|A Chain A, Nmr Structure Of Spinach Thylakoid Soluble Phosphoprotein Of 9 Kda In Sds Micelles Length = 84

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 4/68 (5%)
Query: 20 TAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILK--KVEDKSPPSGR--GTTNGRKN 75
          +AAK    +K+EKS +DW+LG + K+DQFYETDPIL+   V+     SG+  GTT+G+K 
Sbjct: 1  SAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKG 60
Query: 76 SASVPQPQ 83
          + S+P  +
Sbjct: 61 TVSIPSKK 68
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
2fft_A	84	Thylakoid soluble phosphoprotein; TSP9, structural	9e-21

>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1 Length = 84

 Score = 77.7 bits (190), Expect = 9e-21
 Identities = 40/83 (48%), Positives = 54/83 (65%), Gaps = 4/83 (4%)

Query: 20 TAAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPPSGR----GTTNGRKN 75
          +AAK    +K+EKS +DW+LG + K+DQFYETDPIL+  + KS  S      GTT+G+K 
Sbjct: 1  SAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKG 60

Query: 76 SASVPQPQKKKGGFGLGDLFAKK 98
          + S+P  +K   G   G LFAKK
Sbjct: 61 TVSIPSKKKNGNGGVFGGLFAKK 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
2fft_A	84	Thylakoid soluble phosphoprotein; TSP9, structural	100.0

>2fft_A Thylakoid soluble phosphoprotein; TSP9, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Spinacia oleracea} SCOP: g.88.1.1

Probab=100.00  E-value=7.1e-38  Score=214.41  Aligned_cols=76  Identities=55%  Similarity=0.869  Sum_probs=65.6

Q ss_pred             cccccCCcchhhhhHHHHHhhhccccceeeccchhhcccCCCCC--CC--CCcCCCCCCCCCcCCCccc-C-CCCccccc
Q 034302           21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSPP--SG--RGTTNGRKNSASVPQPQKK-K-GGFGLGDL   94 (98)
Q Consensus        21 a~~~~a~~keEKgl~D~I~G~l~KedQ~~ETDPiL~Kv~~k~~~--~g--rGt~~gkk~~~~~~~p~kk-k-~GGGfGGL   94 (98)
                      |++++++++|||||+|||||+|||||||||||||||||++++++  ++  |+|++|||+++++  |+++ + ++||||||
T Consensus         2 a~~~~a~akeEKgl~D~i~G~i~K~dQ~~ETDPiL~Kv~~k~~~~~a~~~~~tt~g~k~~~~~--p~k~~~gggGGfGGL   79 (84)
T 2fft_A            2 AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSI--PSKKKNGNGGVFGGL   79 (84)
T ss_dssp             CCCCCCCCCCCCSHHHHHHHHHSCCCCSCCSCCSSSCSCCCCCSCCCCCCCSCSCSCCSSSSS--CSSCSCCSCCSSSSS
T ss_pred             CccCCCcccccccHHHHHhhhhhhhhhheecchhhhccccCCCcccccccccccccccccccC--ChhhhcCCCCcccce
Confidence            56778999999999999999999999999999999999999974  23  3789999999998  5533 3 34779999


Q ss_pred             cccC
Q 034302           95 FAKK   98 (98)
Q Consensus        95 FaKk   98 (98)
                      |+||
T Consensus        80 FaKK   83 (84)
T 2fft_A           80 FAKK   83 (84)
T ss_dssp             SCCC
T ss_pred             eccC
Confidence            9997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	98
d2ffta1	83	g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein	4e-27

>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 83

class: Small proteins
fold: Intrinsically disordered proteins
superfamily: TSP9-like
family: TSP9-like
domain: Thylakoid soluble phosphoprotein TSP9
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 92.8 bits (230), Expect = 4e-27
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 4/82 (4%)

Query: 21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKS----PPSGRGTTNGRKNS 76
          AAK    +K+EKS +DW+LG + K+DQFYETDPIL+  + KS         GTT+G+K +
Sbjct: 1  AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGT 60

Query: 77 ASVPQPQKKKGGFGLGDLFAKK 98
           S+P  +K   G   G LFAKK
Sbjct: 61 VSIPSKKKNGNGGVFGGLFAKK 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	98
d2ffta1	83	Thylakoid soluble phosphoprotein TSP9 {Spinach (Sp	100.0

>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Small proteins
fold: Intrinsically disordered proteins
superfamily: TSP9-like
family: TSP9-like
domain: Thylakoid soluble phosphoprotein TSP9
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=2.6e-38  Score=214.50  Aligned_cols=78  Identities=53%  Similarity=0.856  Sum_probs=68.9

Q ss_pred             cccccCCcchhhhhHHHHHhhhccccceeeccchhhcccCCCC--CCCC--CcCCCCCCCCCcCCCcccCCCCccccccc
Q 034302           21 AAKEAGGSKEEKSLLDWILGGMQKQDQFYETDPILKKVEDKSP--PSGR--GTTNGRKNSASVPQPQKKKGGFGLGDLFA   96 (98)
Q Consensus        21 a~~~~a~~keEKgl~D~I~G~l~KedQ~~ETDPiL~Kv~~k~~--~~gr--Gt~~gkk~~~~~~~p~kkk~GGGfGGLFa   96 (98)
                      |+++++++||||||+|||+|.||||||||||||||+|||+|+.  +++|  ||+++||+++++||+++++++||||||||
T Consensus         1 aakgsgg~KeeKg~idw~lg~~~KeDQFyETdPILkkv~~K~~g~t~gkkggT~sg~knsv~~p~kkk~~~~~gfgglfa   80 (83)
T d2ffta1           1 AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFA   80 (83)
T ss_dssp             CCCCCCCCCCCCSHHHHHHHHHSCCCCSCCSCCSSSCSCCCCCSCCCCCCCSCSCSCCSSSSSCSSCSCCSCCSSSSSSC
T ss_pred             CccccCCcccccchHHHHhccccccccccccchhhhccccccCCccCCCcCccccCCcccccccchhhccCCCcccceee
Confidence            4677899999999999999999999999999999999999993  3566  59999999999976666666688999999


Q ss_pred             cC
Q 034302           97 KK   98 (98)
Q Consensus        97 Kk   98 (98)
                      ||
T Consensus        81 kk   82 (83)
T d2ffta1          81 KK   82 (83)
T ss_dssp             CC
T ss_pred             cC
Confidence            97