Citrus Sinensis ID: 034351

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccccccccccccEEccccccccccEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcEccccccccccccccccccccccccccccccEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MGPFVLTQVATGLSVLAGAALVKSVmdqkpmagpfdrcpscngtgrvtcmctrwsdgdvgcrtcagsgrmacrscggtgtgrplpvqlsvrrpnrps
Flexible Loop (DISEMBL)
MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRscggtgtgrplpvqlsvrrpnrps
Low Complexity Region (SEG)
MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS
Disordered region (IsUnstruct)
***FVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSCGG********************
Disordered Region (DISOPRED)
**PFVLTQVATGLSVLAGAAL********************NGTGRVTCMCTRWSDGDVGCRTCAGSGRMAC***********L*************
Disordered Region (DISEMBL)
MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSCGGTGTGRPLPVQLS********
Disordered Region (DISPRO)
*GPFVLTQVATGLSVLAGAALVK**********PFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSC*GTGTGRPLPVQLSVRR*****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
35187445	98	fiber protein Fb25 [Gossypium barbadense	1.0	0.989	0.846	1e-39
359473751	97	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.835	2e-39
351727739	98	uncharacterized protein LOC100500654 pre	0.989	0.979	0.812	4e-39
356540138	98	PREDICTED: uncharacterized protein LOC10	0.989	0.979	0.802	8e-39
37788355	98	drought-induced protein 1 [Glycine latif	0.989	0.979	0.812	1e-38
255547712	98	conserved hypothetical protein [Ricinus	1.0	0.989	0.824	2e-38
224075557	96	predicted protein [Populus trichocarpa]	0.969	0.979	0.822	2e-37
449529172	101	PREDICTED: uncharacterized protein LOC10	0.989	0.950	0.770	6e-36
18422312	97	chaperone protein dnaJ-like protein [Ara	0.989	0.989	0.75	8e-36
357462997	98	Drought-induced protein [Medicago trunca	1.0	0.989	0.755	2e-35

>gi|35187445|gb|AAQ84314.1| fiber protein Fb25 [Gossypium barbadense]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 91/98 (92%), Gaps = 1/98 (1%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          M P VLTQVATGLSVLAGA LVKSVMDQKPMAGPF RCP+CNGTGR+TC+CTRWSDGD+G
Sbjct: 1  MFPAVLTQVATGLSVLAGAVLVKSVMDQKPMAGPFQRCPTCNGTGRITCICTRWSDGDIG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRP-NRPS 97
          CRTCAGSGRMAC SCGG+GTGRP+PVQ+SVR+P NR S
Sbjct: 61 CRTCAGSGRMACSSCGGSGTGRPIPVQISVRQPTNRNS 98

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473751|ref|XP_003631355.1| PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 88/97 (90%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          M P VLTQ+ATGLSVLAGA LVKSVMDQKPMAGPF RC SCNGTGRV+C+C+RWSDGDVG
Sbjct: 1  MSPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFPRCSSCNGTGRVSCLCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS 97
          CRTCAGSGRMAC SCGGTGTGRP+P+Q+S R P RPS
Sbjct: 61 CRTCAGSGRMACSSCGGTGTGRPIPIQISARPPKRPS 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727739|ref|NP_001237427.1| uncharacterized protein LOC100500654 precursor [Glycine max] gi|255630863|gb|ACU15794.1| unknown [Glycine max]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 89/96 (92%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          MGP VL+Q+ATGLSVLAGA LVKSVMDQKPMAGPF RCP+CNGTGRVTC+C+RWSDGDVG
Sbjct: 1  MGPMVLSQLATGLSVLAGAVLVKSVMDQKPMAGPFTRCPTCNGTGRVTCLCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          C TC+GSGRMAC SCGG+GTGRPLP ++++R PNRP
Sbjct: 61 CSTCSGSGRMACSSCGGSGTGRPLPAKIAIRPPNRP 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540138|ref|XP_003538547.1| PREDICTED: uncharacterized protein LOC100797611 [Glycine max]

 Score =  164 bits (414), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/96 (80%), Positives = 89/96 (92%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          MGP +L+Q+ATGLSVLAGA LVKSVMDQKPMAGPF RCP+CNGTGRVTC+C+RWSDGDVG
Sbjct: 1  MGPMLLSQLATGLSVLAGAVLVKSVMDQKPMAGPFTRCPTCNGTGRVTCLCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          C TC+GSGRMAC SCGG+GTGRPLP ++++R PNRP
Sbjct: 61 CSTCSGSGRMACSSCGGSGTGRPLPAKIAIRPPNRP 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37788355|gb|AAO91809.1| drought-induced protein 1 [Glycine latifolia]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 88/96 (91%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          MGP VL+Q+ATGLSVLAGA LVKSVMDQKPMAGPF RCP+CNGTGRVTC+C+RWSDGDVG
Sbjct: 1  MGPMVLSQLATGLSVLAGAVLVKSVMDQKPMAGPFSRCPTCNGTGRVTCLCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          C T AGSGRMAC SCGG+GTGRPLP ++++R PNRP
Sbjct: 61 CSTYAGSGRMACSSCGGSGTGRPLPAKIAIRPPNRP 96

Source: Glycine latifolia

Species: Glycine latifolia

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547712|ref|XP_002514913.1| conserved hypothetical protein [Ricinus communis] gi|223545964|gb|EEF47467.1| conserved hypothetical protein [Ricinus communis]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/97 (82%), Positives = 88/97 (90%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          MGP VLTQ+ATGLSVLAGA LVKSVMDQKPMAGPF RCP+CNGTGRV C+C+RWSDGDVG
Sbjct: 1  MGPMVLTQLATGLSVLAGAVLVKSVMDQKPMAGPFSRCPTCNGTGRVNCLCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS 97
          CRTCAGSGRMAC SCGG+GTGRPLPV++S R P+  S
Sbjct: 61 CRTCAGSGRMACSSCGGSGTGRPLPVRISARPPSNGS 97

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075557|ref|XP_002304682.1| predicted protein [Populus trichocarpa] gi|222842114|gb|EEE79661.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 79/96 (82%), Positives = 86/96 (89%), Gaps = 2/96 (2%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          MGP VLTQ+ATGLSVLAGA LVKSVMDQKPMAGP   CPSCNGTGRV C+C+RWSDGD G
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDQKPMAGPL--CPSCNGTGRVACLCSRWSDGDAG 58

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          CR C+GSGRMAC SCGGTGTGRP+PVQ+S+R PNRP
Sbjct: 59 CRACSGSGRMACSSCGGTGTGRPIPVQISMRSPNRP 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529172|ref|XP_004171575.1| PREDICTED: uncharacterized protein LOC101232512 [Cucumis sativus]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 84/96 (87%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          M P VL+Q+ATGLSVLAGA LVKSVMD KPMAG F RCPSCNG+GRV C+C+RWSDGD+G
Sbjct: 1  MVPIVLSQLATGLSVLAGAVLVKSVMDHKPMAGSFPRCPSCNGSGRVPCLCSRWSDGDIG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          CRTC+GSGRM C SCGG+GTGRP+P Q+SVRR N P
Sbjct: 61 CRTCSGSGRMFCSSCGGSGTGRPIPSQISVRRSNYP 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422312|ref|NP_568623.1| chaperone protein dnaJ-like protein [Arabidopsis thaliana] gi|21955291|gb|AAK59492.2| unknown protein [Arabidopsis thaliana] gi|23296807|gb|AAN13175.1| unknown protein [Arabidopsis thaliana] gi|332007549|gb|AED94932.1| chaperone protein dnaJ-like protein [Arabidopsis thaliana]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 84/96 (87%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
          M P V+TQ+ATG+SVLAGA  +KSVMDQKPMAG F RCP+CNGTGRVTC C+RWSDGDVG
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query: 61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
          CR C+GSGR AC +CGG+GTGRPLP Q++V+ PNRP
Sbjct: 61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462997|ref|XP_003601780.1| Drought-induced protein [Medicago truncatula] gi|355490828|gb|AES72031.1| Drought-induced protein [Medicago truncatula]

 Score =  152 bits (384), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/98 (75%), Positives = 86/98 (87%), Gaps = 1/98 (1%)

Query: 1  MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGP-FDRCPSCNGTGRVTCMCTRWSDGDV 59
          MGP V++Q+ATGLSVLAGA LVK VMDQKPMAGP F RCPSCNGTGRV C+C+RWSDGD+
Sbjct: 1  MGPLVISQLATGLSVLAGAVLVKQVMDQKPMAGPSFPRCPSCNGTGRVPCLCSRWSDGDI 60

Query: 60 GCRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRPS 97
          GC TC+GSGRM C SCGG+GTGRPLP ++++R  NRPS
Sbjct: 61 GCSTCSGSGRMGCSSCGGSGTGRPLPARITIRPTNRPS 98

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:2169243	97	AT5G43260 [Arabidopsis thalian	0.989	0.989	0.75	8.7e-40
TAIR|locus:2097164	159	AT3G44020 "AT3G44020" [Arabido	0.845	0.515	0.337	5.5e-06
UNIPROTKB|G4N8Z4	59	MGG_17224 "Uncharacterized pro	0.453	0.745	0.367	0.00013
ZFIN|ZDB-GENE-080516-4	211	zgc:175175 "zgc:175175" [Danio	0.608	0.279	0.385	0.00057
UNIPROTKB|Q9Y2M2	353	SSUH2 "Protein SSUH2 homolog"	0.443	0.121	0.404	0.0007
ZFIN|ZDB-GENE-060421-4694	382	zgc:136895 "zgc:136895" [Danio	0.443	0.112	0.416	0.00079

TAIR|locus:2169243 AT5G43260 [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 72/96 (75%), Positives = 84/96 (87%)

Query:     1 MGPFVLTQVATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVG 60
             M P V+TQ+ATG+SVLAGA  +KSVMDQKPMAG F RCP+CNGTGRVTC C+RWSDGDVG
Sbjct:     1 MSPIVITQLATGISVLAGAVFIKSVMDQKPMAGQFPRCPTCNGTGRVTCFCSRWSDGDVG 60

Query:    61 CRTCAGSGRMACRSCGGTGTGRPLPVQLSVRRPNRP 96
             CR C+GSGR AC +CGG+GTGRPLP Q++V+ PNRP
Sbjct:    61 CRRCSGSGRAACSNCGGSGTGRPLPAQITVQPPNRP 96

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2097164 AT3G44020 "AT3G44020" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 29/86 (33%), Positives = 41/86 (47%)

Query:     2 GPFVLTQV-ATGLSVLAGAALVKSVMDQKPMAGPFDRCPSCNGTGRVTCMCTRWS--DGD 58
             G F+ TQ     +S++   AL    +  K    P +RC    GT  V C+  +     G 
Sbjct:    75 GGFIDTQTFIVTISLVVAIAL-SLFLGFKGDPVPCERCGGNGGTKCVFCLEGKMKVESGM 133

Query:    59 VGCRTCAGSGRMACRSCGGTGTGRPL 84
             V C+ C GSG + C+ CGG+G  R L
Sbjct:   134 VDCKVCKGSGLIFCKKCGGSGYSRRL 159

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

UNIPROTKB|G4N8Z4 MGG_17224 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query:    36 DRCPSCNGTGRVTCMCTRWSDGDV----G-CRTCAGSGRMACRSCGGTG 79
             + C SC+GTG+ TC+    +  D+    G C  C   G++ C +CGG G
Sbjct:     7 ETCSSCSGTGQCTCLRCGGTGSDIFAECGICPHCYARGQVPCSACGGKG 55

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-080516-4 zgc:175175 "zgc:175175" [Danio rerio (taxid:7955)]

 Score = 90 (36.7 bits), Expect = 0.00057, P = 0.00057
 Identities = 27/70 (38%), Positives = 31/70 (44%)

Query:    30 PMAGPFDRCPSCNGTGRVTCM-CTRWSDGDVGCRTCAGSG------RMACRSCGGTGTGR 82
             P       C SC+  GR  C+ C R   G + C  C G G      R  C  CGGTG  R
Sbjct:   143 PHTSSVQDCSSCSTLGRTMCLSCGR--TGRILCGFCGGMGWTNYGQRQFCGVCGGTGRQR 200

Query:    83 PLPVQLSVRR 92
                +QLSV R
Sbjct:   201 F--IQLSVFR 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9Y2M2 SSUH2 "Protein SSUH2 homolog" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 0.00070, P = 0.00070
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query:    37 RCPSCNGTGRVTC-MCT---RWSDGDVGCRTCAGSGRMACRSCGGTG 79
             +C  C+G G V C  C    R +     C+ CAGSGR  C +C G G
Sbjct:   165 KCSGCHGAGTVRCPSCCGAKRKAKQSRRCQLCAGSGRRRCSTCSGRG 211

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-060421-4694 zgc:136895 "zgc:136895" [Danio rerio (taxid:7955)]

 Score = 93 (37.8 bits), Expect = 0.00079, P = 0.00079
 Identities = 20/48 (41%), Positives = 25/48 (52%)

Query:    38 CPSCNGTGRVTC-MC--TRW--SDGDVGCRTCAGSGRMACRSCGGTGT 80
             C  C  +GR  C  C  T W  S     C +C+GSG + C SCGG G+
Sbjct:   195 CSKCVNSGRTRCGHCSGTGWRSSPERQRCGSCSGSGMIRCHSCGGVGS 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       97        97   0.00091  102 3  11 22  0.36    30
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  528 (56 KB)
  Total size of DFA:  114 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.49u 0.07s 10.56t   Elapsed:  00:00:11
  Total cpu time:  10.49u 0.07s 10.56t   Elapsed:  00:00:12
  Start:  Fri May 10 22:01:11 2013   End:  Fri May 10 22:01:23 2013

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	1e-04
COG1107	715	COG1107, COG1107, Archaea-specific RecJ-like exonu	3e-04
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-04
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-04
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	8e-04
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	0.001
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	0.001
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	0.003
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)

Query: 38  CPSCNGTG--RVTC------MCTRWSDGDVGCRTCAGSGRM---ACRSCGGTGT 80
           CP+C+GTG  R+        M T  +     CRTC G GR+    C  C GTGT
Sbjct: 168 CPTCHGTGQQRIVRGQGFFRMVTVTT-----CRTCGGRGRIPEEKCPRCNGTGT 216

Length = 365

>gnl|CDD|224032 COG1107, COG1107, Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 38  CPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGR-MACRSCGGTGTGRPLPVQLSVRR 92
           CP C G G VT   T        C  C G+G+ + C  CG         +    RR
Sbjct: 56  CPKCRGKGTVTVYDT--------CPECGGTGKVLTCDICGDIIVPWEEGLCPECRR 103

Length = 715

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 29  KPMAGPFDRCPSCNGTGRVTCMCTRWSDGDVGCRT---CAGSGRM---ACRSCGGTGTGR 82
           KP + P   CP C+GTG+V           V  RT   C G G++    C  CGGTG  R
Sbjct: 167 KPGSKP-VTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIR 225

Length = 386

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 8/49 (16%)

Query: 38  CPSCNGTGRVTCMCTRWSDGDVG----CRTCAGSGRMA---CRSCGGTG 79
           CP+C GTG+V         G       C TC G G++    C +C G G
Sbjct: 163 CPTCGGTGQVR-RQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKG 210

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 10/50 (20%)

Query: 38  CPSCNGTGRVT----CMCTRWSDGDVGCRTCAGSGRMA---CRSCGGTGT 80
           CP+CNG+G+V          +      C TC G+G++    C  C G G 
Sbjct: 162 CPTCNGSGQVRTVQRTGFFSFQ---QTCPTCNGTGKIIKDPCGKCKGKGR 208

Length = 371

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 10/50 (20%)

Query: 38  CPSCNGTGRVTCMCTRWSDGDV-----GCRTCAGSGRM---ACRSCGGTG 79
           CP C+GTGR+     R S   V      C  C G+G++    C  CGG+G
Sbjct: 172 CPKCHGTGRIRE--ERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSG 219

Length = 369

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 29  KPMAGPFDRCPSCNGTGRVTCMCTRWSDG-----DVGCRTCAGSGRMA---CRSCGGTGT 80
           KP   P  RCP+C GTG+VT   TR +          C TC G G++    C  C GTG 
Sbjct: 153 KPGTSP-KRCPTCGGTGQVT--TTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGK 209

Query: 81  GR 82
            R
Sbjct: 210 VR 211

Length = 377

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 17/63 (26%)

Query: 29  KPMAGPFDRCPSCNGTGRVTC--------MCTRWSDGDVGCRTCAGSGRM---ACRSCGG 77
           KP     + C  C G+G+V+         +  R +     C  C G+G+     C +C G
Sbjct: 155 KPGTSK-ETCSHCGGSGQVSVEQNTPFGRVVNRQT-----CPHCNGTGQEIKEKCPTCHG 208

Query: 78  TGT 80
            G 
Sbjct: 209 KGK 211

Length = 376

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 34.3 bits (80), Expect = 0.003
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%)

Query: 38  CPSCNGTGRVTCMCTRWSDG----DVGCRTCAGSGRMA---CRSCGGTG 79
           CP+C+G G+V     R   G       C TC G G++    C+ C G G
Sbjct: 162 CPTCHGAGQV-----RMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQG 205

Length = 371

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
PLN03165	111	chaperone protein dnaJ-related; Provisional	99.08
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.03
KOG2813	406	consensus Predicted molecular chaperone, contains	98.82
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	98.68
PRK14279	392	chaperone protein DnaJ; Provisional	98.66
PRK14285	365	chaperone protein DnaJ; Provisional	98.64
PRK14286	372	chaperone protein DnaJ; Provisional	98.64
PRK14298	377	chaperone protein DnaJ; Provisional	98.63
PRK14296	372	chaperone protein DnaJ; Provisional	98.63
PRK14282	369	chaperone protein DnaJ; Provisional	98.62
PRK14284	391	chaperone protein DnaJ; Provisional	98.6
PRK14278	378	chaperone protein DnaJ; Provisional	98.6
PRK14280	376	chaperone protein DnaJ; Provisional	98.6
PRK14301	373	chaperone protein DnaJ; Provisional	98.59
PRK14300	372	chaperone protein DnaJ; Provisional	98.59
PRK14276	380	chaperone protein DnaJ; Provisional	98.58
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.58
PRK14295	389	chaperone protein DnaJ; Provisional	98.57
PRK10767	371	chaperone protein DnaJ; Provisional	98.55
PRK14288	369	chaperone protein DnaJ; Provisional	98.54
PRK14277	386	chaperone protein DnaJ; Provisional	98.54
PRK14290	365	chaperone protein DnaJ; Provisional	98.53
PRK14291	382	chaperone protein DnaJ; Provisional	98.53
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.51
PRK14294	366	chaperone protein DnaJ; Provisional	98.51
PRK14281	397	chaperone protein DnaJ; Provisional	98.51
PRK14289	386	chaperone protein DnaJ; Provisional	98.51
PRK14297	380	chaperone protein DnaJ; Provisional	98.48
PRK14287	371	chaperone protein DnaJ; Provisional	98.44
PRK14283	378	chaperone protein DnaJ; Provisional	98.4
PRK14293	374	chaperone protein DnaJ; Provisional	98.39
PRK14292	371	chaperone protein DnaJ; Provisional	98.28
KOG2813	406	consensus Predicted molecular chaperone, contains	98.05
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	97.81
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	97.5
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	97.37
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	97.28
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	97.19
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	97.0
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	96.88
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.88
PRK14279	392	chaperone protein DnaJ; Provisional	96.45
PRK14300	372	chaperone protein DnaJ; Provisional	96.42
PRK14296	372	chaperone protein DnaJ; Provisional	96.4
PRK14284	391	chaperone protein DnaJ; Provisional	96.38
PRK14298	377	chaperone protein DnaJ; Provisional	96.37
PRK14285	365	chaperone protein DnaJ; Provisional	96.26
PRK10767	371	chaperone protein DnaJ; Provisional	96.25
COG1107	715	Archaea-specific RecJ-like exonuclease, contains D	96.19
PRK14301	373	chaperone protein DnaJ; Provisional	96.11
PRK14282	369	chaperone protein DnaJ; Provisional	96.08
PRK14289	386	chaperone protein DnaJ; Provisional	96.07
PRK14280	376	chaperone protein DnaJ; Provisional	96.07
PRK14297	380	chaperone protein DnaJ; Provisional	96.05
PRK14278	378	chaperone protein DnaJ; Provisional	96.04
PRK14286	372	chaperone protein DnaJ; Provisional	96.02
PRK14288	369	chaperone protein DnaJ; Provisional	95.99
PRK14291	382	chaperone protein DnaJ; Provisional	95.94
PRK14295	389	chaperone protein DnaJ; Provisional	95.94
PRK14290	365	chaperone protein DnaJ; Provisional	95.9
PTZ00037	421	DnaJ_C chaperone protein; Provisional	95.89
PRK14276	380	chaperone protein DnaJ; Provisional	95.86
PRK14277	386	chaperone protein DnaJ; Provisional	95.85
PRK14292	371	chaperone protein DnaJ; Provisional	95.68
PRK14287	371	chaperone protein DnaJ; Provisional	95.61
PRK14294	366	chaperone protein DnaJ; Provisional	95.6
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	95.56
PRK14281	397	chaperone protein DnaJ; Provisional	95.52
PRK14293	374	chaperone protein DnaJ; Provisional	95.35
PRK14283	378	chaperone protein DnaJ; Provisional	95.1
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	94.34
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	93.83
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	90.46
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	86.62
PRK03564	309	formate dehydrogenase accessory protein FdhE; Prov	84.97
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	84.71
COG1198	730	PriA Primosomal protein N' (replication factor Y)	84.71
PF04216	290	FdhE: Protein involved in formate dehydrogenase fo	81.86
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	81.03

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=99.08  E-value=5.4e-11  Score=83.36  Aligned_cols=78  Identities=23%  Similarity=0.518  Sum_probs=59.6

Q ss_pred             hhhHHhhhHHHHHHHHHhhhh---CCccCCCCCCCCCCCcCCcccccc-cCcccC----------CcccCCCCCCCeeee
Q 034351            6 LTQVATGLSVLAGAALVKSVM---DQKPMAGPFDRCPSCNGTGRVTCM-CTRWSD----------GDVGCRTCAGSGRMA   71 (97)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~---~~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~~----------~~~~C~~C~G~Gk~~   71 (97)
                      ++-.++.|+++||+-+--+-.   +..+.......|..|+|+|..+|+ |+|++.          ...+|+.|+|+|+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~   88 (111)
T PLN03165          9 VAISVGVVSIAVGIGIPVFYETQIDNAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLT   88 (111)
T ss_pred             hhhhhhhhhhhhccCCcEEEEEeeehhhhhccCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceee
Confidence            344466777777776544422   233444558899999999999999 999731          267999999999999


Q ss_pred             CCCCCccceeee
Q 034351           72 CRSCGGTGTGRP   83 (97)
Q Consensus        72 C~~C~G~G~~r~   83 (97)
                      |+.|+|+|++..
T Consensus        89 C~~C~G~G~~~~  100 (111)
T PLN03165         89 CTTCQGSGIQPR  100 (111)
T ss_pred             CCCCCCCEEEee
Confidence            999999999873

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.5e-10  Score=94.60  Aligned_cols=54  Identities=31%  Similarity=0.830  Sum_probs=45.7

Q ss_pred             CCCCCCCcCCc------ccccc-cCcccC-----------CcccCCCCCCCeee---eCCCCCccceee---eEEEEE
Q 034351           35 FDRCPSCNGTG------RVTCM-CTRWSD-----------GDVGCRTCAGSGRM---ACRSCGGTGTGR---PLPVQL   88 (97)
Q Consensus        35 ~~~C~~C~GsG------~~~C~-C~Gs~~-----------~~~~C~~C~G~Gk~---~C~~C~G~G~~r---~v~v~I   88 (97)
                      ...|+.|+|+|      ..+|+ |+|+++           ..++|++|+|+|++   +|.+|+|+|+++   .++|+|
T Consensus       142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~I  219 (371)
T COG0484         142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNI  219 (371)
T ss_pred             eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEEC
Confidence            78999999997      47999 999742           36899999999998   999999999987   455544

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.3e-09  Score=89.06  Aligned_cols=27  Identities=26%  Similarity=0.592  Sum_probs=25.8

Q ss_pred             CccCCCCCCCCCCCcCCcccccc-cCcc
Q 034351           28 QKPMAGPFDRCPSCNGTGRVTCM-CTRW   54 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs   54 (97)
                      ++||+...+.|+.|+|.|...|+ |+|+
T Consensus       180 ~vphs~~v~~ch~c~gRG~~vc~gc~g~  207 (406)
T KOG2813|consen  180 VVPHSMIVTFCHACLGRGAMVCHGCSGS  207 (406)
T ss_pred             eccchHhhhhhhcccCCCceeccCcCCC
Confidence            89999999999999999999999 9986

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=98.68  E-value=1e-08  Score=64.73  Aligned_cols=42  Identities=43%  Similarity=1.165  Sum_probs=32.2

Q ss_pred             CCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee----eCCCCCccc
Q 034351           38 CPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM----ACRSCGGTG   79 (97)
Q Consensus        38 C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~----~C~~C~G~G   79 (97)
                      |+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|++    +|+.|+|+|
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g   66 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG   66 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence            789999994      7799 999631             37899999999987    799999987

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=98.66  E-value=3.4e-08  Score=80.16  Aligned_cols=59  Identities=25%  Similarity=0.671  Sum_probs=48.1

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|+|++   +|..|+|.|+++ ..+++|.+..+
T Consensus       173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~Ip~G  251 (392)
T PRK14279        173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRIPPG  251 (392)
T ss_pred             cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEeCCC
Confidence            678999999994      6799 999732         36899999999987   999999999997 45555555544

>PRK14285 chaperone protein DnaJ; Provisional

Probab=98.64  E-value=4e-08  Score=79.04  Aligned_cols=59  Identities=27%  Similarity=0.650  Sum_probs=48.0

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      ..|+ |+|++.         ...+|+.|+|+|++   +|..|+|+|+++ ..+++|.+..+
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G  224 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAG  224 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCC
Confidence            678999999994      6799 999742         36799999999987   999999999987 45566655544

>PRK14286 chaperone protein DnaJ; Provisional

Probab=98.64  E-value=4.1e-08  Score=79.15  Aligned_cols=59  Identities=31%  Similarity=0.824  Sum_probs=47.6

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|+|+.   +|+.|+|.|+++ ..++.|.+..+
T Consensus       150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G  228 (372)
T PRK14286        150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPG  228 (372)
T ss_pred             cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCC
Confidence            678999999994      6799 999741         36799999999987   999999999997 34555555443

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.63  E-value=3.3e-08  Score=79.92  Aligned_cols=59  Identities=34%  Similarity=0.798  Sum_probs=47.3

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|+.   +|+.|+|+|+++ ..+++|.|
T Consensus       141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  220 (377)
T PRK14298        141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNV  220 (377)
T ss_pred             eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecC
Confidence            678999999994      6799 999741             25799999999987   999999999987 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       221 ppG  223 (377)
T PRK14298        221 PAG  223 (377)
T ss_pred             CCC
Confidence            443

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.63  E-value=4.8e-08  Score=78.82  Aligned_cols=59  Identities=24%  Similarity=0.756  Sum_probs=46.9

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|..|+|+|.      .+|+ |+|++.             ...+|+.|+|+|++   +|+.|+|+|+++ ..++.|.+
T Consensus       149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  228 (372)
T PRK14296        149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI  228 (372)
T ss_pred             eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence            678999999994      5799 999742             24699999999987   899999999986 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      .++
T Consensus       229 p~G  231 (372)
T PRK14296        229 PKG  231 (372)
T ss_pred             CCC
Confidence            444

>PRK14282 chaperone protein DnaJ; Provisional

Probab=98.62  E-value=5.8e-08  Score=78.02  Aligned_cols=59  Identities=34%  Similarity=0.916  Sum_probs=47.4

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|+.   +|..|+|.|+++ ..++.|.+
T Consensus       152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  231 (369)
T PRK14282        152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKI  231 (369)
T ss_pred             cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEe
Confidence            678999999994      6799 999731             25799999999987   999999999987 35555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      .++
T Consensus       232 p~G  234 (369)
T PRK14282        232 PAG  234 (369)
T ss_pred             CCC
Confidence            544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.60  E-value=4.5e-08  Score=79.26  Aligned_cols=60  Identities=27%  Similarity=0.722  Sum_probs=47.7

Q ss_pred             CCCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           34 PFDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        34 ~~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      +...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|.|+.   +|..|+|.|+++ ..+|+|.|..+
T Consensus       157 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  236 (391)
T PRK14284        157 GYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAG  236 (391)
T ss_pred             eeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCC
Confidence            3678999999994      6799 999742         35799999999987   999999999986 44555555443

>PRK14278 chaperone protein DnaJ; Provisional

Probab=98.60  E-value=5.6e-08  Score=78.51  Aligned_cols=59  Identities=31%  Similarity=0.727  Sum_probs=47.3

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|++   +|+.|+|.|++. ..++.|.+
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  218 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKI  218 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEE
Confidence            678999999994      6799 999731             25799999999987   999999999987 45555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       219 p~G  221 (378)
T PRK14278        219 PAG  221 (378)
T ss_pred             CCC
Confidence            444

>PRK14280 chaperone protein DnaJ; Provisional

Probab=98.60  E-value=5.9e-08  Score=78.22  Aligned_cols=59  Identities=27%  Similarity=0.722  Sum_probs=47.2

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|+.   +|+.|+|+|+++ ..++.|.+
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~I  222 (376)
T PRK14280        143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKI  222 (376)
T ss_pred             eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEe
Confidence            678999999993      6799 999731             25699999999987   899999999987 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       223 p~G  225 (376)
T PRK14280        223 PAG  225 (376)
T ss_pred             CCC
Confidence            444

>PRK14301 chaperone protein DnaJ; Provisional

Probab=98.59  E-value=6.2e-08  Score=78.11  Aligned_cols=59  Identities=29%  Similarity=0.696  Sum_probs=47.3

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|+|+.   +|+.|+|.|+++ ..++.|.+..+
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  222 (373)
T PRK14301        144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAG  222 (373)
T ss_pred             cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCC
Confidence            678999999994      6799 999742         36899999999987   999999999996 34555555444

>PRK14300 chaperone protein DnaJ; Provisional

Probab=98.59  E-value=7.3e-08  Score=77.59  Aligned_cols=59  Identities=25%  Similarity=0.733  Sum_probs=48.2

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|.|+.   +|..|+|.|++. ..+++|.+..+
T Consensus       145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G  223 (372)
T PRK14300        145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAG  223 (372)
T ss_pred             ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCC
Confidence            678999999993      6799 999742         35699999999987   999999999996 55666666544

>PRK14276 chaperone protein DnaJ; Provisional

Probab=98.58  E-value=6.9e-08  Score=77.94  Aligned_cols=59  Identities=34%  Similarity=0.796  Sum_probs=47.0

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|++   +|..|+|+|+++ ..+++|.+
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~I  225 (380)
T PRK14276        146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKI  225 (380)
T ss_pred             cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEe
Confidence            678999999994      6799 999731             25799999999987   999999999986 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       226 p~G  228 (380)
T PRK14276        226 PAG  228 (380)
T ss_pred             CCC
Confidence            443

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.58  E-value=6.6e-08  Score=79.64  Aligned_cols=58  Identities=26%  Similarity=0.770  Sum_probs=46.1

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee-----eCCCCCccceee-eEEEEEE
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM-----ACRSCGGTGTGR-PLPVQLS   89 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~-----~C~~C~G~G~~r-~v~v~I~   89 (97)
                      ...|+.|+|+|.     .+|. |+|++.             ...+|+.|+|+|++     +|..|+|.|+++ ..++.|.
T Consensus       150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~  229 (421)
T PTZ00037        150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVN  229 (421)
T ss_pred             cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEe
Confidence            678999999994     6799 999742             25699999999986     799999999997 4445554


Q ss_pred             eeC
Q 034351           90 VRR   92 (97)
Q Consensus        90 ~~~   92 (97)
                      |.+
T Consensus       230 Ip~  232 (421)
T PTZ00037        230 IDK  232 (421)
T ss_pred             eCC
Confidence            443

>PRK14295 chaperone protein DnaJ; Provisional

Probab=98.57  E-value=8.1e-08  Score=77.94  Aligned_cols=59  Identities=29%  Similarity=0.731  Sum_probs=47.3

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      .+|+ |+|++.         ...+|+.|+|+|++   +|..|+|.|+++ ..++.|.+..+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G  244 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG  244 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence            678999999994      6799 999742         35799999999987   899999999986 44555555444

>PRK10767 chaperone protein DnaJ; Provisional

Probab=98.55  E-value=1e-07  Score=76.37  Aligned_cols=57  Identities=28%  Similarity=0.767  Sum_probs=45.8

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR   91 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~   91 (97)
                      ...|+.|+|+|.      ..|+ |+|++.         ...+|+.|+|.|+.   +|+.|+|+|+++ ..++.|.+.
T Consensus       142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip  218 (371)
T PRK10767        142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIP  218 (371)
T ss_pred             cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecC
Confidence            678999999994      5799 999742         35689999999987   899999999997 344444443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.54  E-value=1.1e-07  Score=76.50  Aligned_cols=59  Identities=27%  Similarity=0.626  Sum_probs=47.2

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.     .+|+ |+|++.         ...+|+.|+|+|+.   +|..|+|.|+++ ..++.|.+.++
T Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G  217 (369)
T PRK14288        140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEG  217 (369)
T ss_pred             eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCC
Confidence            568999999994     6799 999742         35799999999987   999999999987 45555555544

>PRK14277 chaperone protein DnaJ; Provisional

Probab=98.54  E-value=9.6e-08  Score=77.25  Aligned_cols=59  Identities=34%  Similarity=0.875  Sum_probs=47.1

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|+.   +|..|+|.|++. ..+++|.+
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  234 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNI  234 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEec
Confidence            678999999994      6799 999731             24699999999987   899999999986 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       235 p~G  237 (386)
T PRK14277        235 PAG  237 (386)
T ss_pred             CCC
Confidence            544

>PRK14290 chaperone protein DnaJ; Provisional

Probab=98.53  E-value=1.2e-07  Score=76.08  Aligned_cols=59  Identities=37%  Similarity=0.844  Sum_probs=47.0

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR   91 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~   91 (97)
                      ...|+.|+|+|.     ..|+ |+|++.             ...+|+.|+|.|+.   +|+.|+|+|+++ ..+|.|.|.
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  228 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIP  228 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEEC
Confidence            578999999995     6799 999742             14699999999987   999999999997 455555554


Q ss_pred             CC
Q 034351           92 RP   93 (97)
Q Consensus        92 ~~   93 (97)
                      ++
T Consensus       229 ~G  230 (365)
T PRK14290        229 KG  230 (365)
T ss_pred             CC
Confidence            43

>PRK14291 chaperone protein DnaJ; Provisional

Probab=98.53  E-value=1.3e-07  Score=76.41  Aligned_cols=59  Identities=27%  Similarity=0.682  Sum_probs=47.2

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee--eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM--ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~--~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|..|+|+|.      .+|+ |+|++.         ...+|+.|+|+|.+  +|..|+|.|+++ ..++.|.|.++
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  233 (382)
T PRK14291        156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLVIKKETIKVRIPPG  233 (382)
T ss_pred             eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceEEeeeEEEEEeCCC
Confidence            678999999993      6799 999731         36799999999976  999999999987 44555555443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.51  E-value=1.3e-07  Score=75.09  Aligned_cols=59  Identities=29%  Similarity=0.765  Sum_probs=47.1

Q ss_pred             CCCCCCCcCCc------ccccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTG------RVTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG------~~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|      ...|. |+|++.             ...+|+.|+|.|+.   +|..|+|+|+++ ..++.|.+
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  222 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKI  222 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEE
Confidence            67899999999      36799 999731             25699999999987   899999999987 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       223 p~G  225 (354)
T TIGR02349       223 PAG  225 (354)
T ss_pred             CCC
Confidence            444

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=98.51  E-value=1.3e-07  Score=75.97  Aligned_cols=59  Identities=31%  Similarity=0.781  Sum_probs=47.5

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeCC
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRRP   93 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~~   93 (97)
                      ...|+.|+|+|.      ..|+ |+|.+.         ...+|+.|+|.|+.   +|..|+|.|+++ ..+++|.+..+
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G  222 (366)
T PRK14294        144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAG  222 (366)
T ss_pred             cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCC
Confidence            678999999994      5799 999742         36799999999987   999999999997 44555555444

>PRK14281 chaperone protein DnaJ; Provisional

Probab=98.51  E-value=1.2e-07  Score=77.04  Aligned_cols=59  Identities=36%  Similarity=0.782  Sum_probs=47.4

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEee
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVR   91 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~   91 (97)
                      ...|+.|+|+|.     ..|. |+|.+.             ...+|+.|+|+|++   +|+.|+|.|+++ ..+++|.+.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip  242 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTVP  242 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEecC
Confidence            578999999994     5799 999731             25689999999987   999999999997 456666555


Q ss_pred             CC
Q 034351           92 RP   93 (97)
Q Consensus        92 ~~   93 (97)
                      .+
T Consensus       243 ~G  244 (397)
T PRK14281        243 AG  244 (397)
T ss_pred             CC
Confidence            44

>PRK14289 chaperone protein DnaJ; Provisional

Probab=98.51  E-value=1.4e-07  Score=76.09  Aligned_cols=61  Identities=30%  Similarity=0.742  Sum_probs=48.6

Q ss_pred             CCCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEE
Q 034351           34 PFDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLS   89 (97)
Q Consensus        34 ~~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~   89 (97)
                      +...|+.|+|+|.      ..|+ |+|++.             ...+|+.|+|+|+.   +|..|+|+|+++ ..+++|.
T Consensus       153 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  232 (386)
T PRK14289        153 KYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVK  232 (386)
T ss_pred             eecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEE
Confidence            3689999999994      6799 999731             25689999999987   999999999997 4566666


Q ss_pred             eeCCC
Q 034351           90 VRRPN   94 (97)
Q Consensus        90 ~~~~~   94 (97)
                      +..+.
T Consensus       233 Ip~G~  237 (386)
T PRK14289        233 IPAGV  237 (386)
T ss_pred             eCCCC
Confidence            65543

>PRK14297 chaperone protein DnaJ; Provisional

Probab=98.48  E-value=2e-07  Score=75.12  Aligned_cols=59  Identities=34%  Similarity=0.805  Sum_probs=46.8

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|.|+.   +|..|+|.|+++ ..+++|.+
T Consensus       148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~I  227 (380)
T PRK14297        148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNV  227 (380)
T ss_pred             eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEe
Confidence            678999999994      6799 999731             36799999999987   899999999875 44555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       228 p~G  230 (380)
T PRK14297        228 PAG  230 (380)
T ss_pred             CCC
Confidence            443

>PRK14287 chaperone protein DnaJ; Provisional

Probab=98.44  E-value=2.5e-07  Score=74.63  Aligned_cols=59  Identities=31%  Similarity=0.792  Sum_probs=46.6

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      .+|+ |+|++.             ...+|+.|+|+|++   +|..|+|.|++. ..+++|.+
T Consensus       138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  217 (371)
T PRK14287        138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKV  217 (371)
T ss_pred             eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEE
Confidence            578999999993      6799 999731             24799999999987   899999999986 34555555


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       218 p~G  220 (371)
T PRK14287        218 PAG  220 (371)
T ss_pred             CCc
Confidence            444

>PRK14283 chaperone protein DnaJ; Provisional

Probab=98.40  E-value=3.4e-07  Score=73.81  Aligned_cols=59  Identities=29%  Similarity=0.765  Sum_probs=47.6

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      ..|+ |+|++.             ...+|+.|+|+|+.   +|..|+|+|.+. ..+++|.+
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~I  225 (378)
T PRK14283        146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKI  225 (378)
T ss_pred             eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEE
Confidence            578999999984      5799 999731             25689999999987   999999999987 45666666


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       226 ppG  228 (378)
T PRK14283        226 PAG  228 (378)
T ss_pred             CCC
Confidence            544

>PRK14293 chaperone protein DnaJ; Provisional

Probab=98.39  E-value=4.2e-07  Score=73.16  Aligned_cols=59  Identities=29%  Similarity=0.834  Sum_probs=47.1

Q ss_pred             CCCCCCCcCCcc------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEEe
Q 034351           35 FDRCPSCNGTGR------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSV   90 (97)
Q Consensus        35 ~~~C~~C~GsG~------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~   90 (97)
                      ...|+.|+|+|.      ..|. |+|++.             ...+|..|+|.|+.   +|..|+|.|++. ..++.|.+
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I  222 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINI  222 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEe
Confidence            678999999994      5699 999742             24689999999987   999999999987 44556665


Q ss_pred             eCC
Q 034351           91 RRP   93 (97)
Q Consensus        91 ~~~   93 (97)
                      ..+
T Consensus       223 ppG  225 (374)
T PRK14293        223 PAG  225 (374)
T ss_pred             CCC
Confidence            544

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.28  E-value=8.6e-07  Score=71.12  Aligned_cols=59  Identities=29%  Similarity=0.715  Sum_probs=46.1

Q ss_pred             CCCCCCCcCCcc-------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee-eEEEEEE
Q 034351           35 FDRCPSCNGTGR-------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLS   89 (97)
Q Consensus        35 ~~~C~~C~GsG~-------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~   89 (97)
                      ...|+.|+|+|.       .+|. |+|++.             ...+|+.|+|.|+.   +|..|+|.|++. ..++.|.
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~  218 (371)
T PRK14292        139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVK  218 (371)
T ss_pred             eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEE
Confidence            678999999993       5799 999731             24689999999987   999999999986 3445555


Q ss_pred             eeCC
Q 034351           90 VRRP   93 (97)
Q Consensus        90 ~~~~   93 (97)
                      +..+
T Consensus       219 Ip~G  222 (371)
T PRK14292        219 LPRG  222 (371)
T ss_pred             ECCC
Confidence            4443

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=5.2e-06  Score=68.28  Aligned_cols=48  Identities=40%  Similarity=0.924  Sum_probs=36.1

Q ss_pred             CCCCCCCcCCc--------ccccc-cCcc---------------cCCcccCCCCCCCeeeeCCCCCccceee
Q 034351           35 FDRCPSCNGTG--------RVTCM-CTRW---------------SDGDVGCRTCAGSGRMACRSCGGTGTGR   82 (97)
Q Consensus        35 ~~~C~~C~GsG--------~~~C~-C~Gs---------------~~~~~~C~~C~G~Gk~~C~~C~G~G~~r   82 (97)
                      ...|+.|+|+|        ...|. |-|-               +.+..+|++|+|.|+++|.+|+|.|...
T Consensus       198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~gtgsll  269 (406)
T KOG2813|consen  198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCSGTGSLL  269 (406)
T ss_pred             ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCcccccccCcccee
Confidence            78899999999        56777 7772               1156777777777777777777777776

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=97.81  E-value=1.5e-05  Score=69.47  Aligned_cols=48  Identities=35%  Similarity=0.945  Sum_probs=40.7

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC----------------------CcccCCCCCCCeee----eCCCCCccceee
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD----------------------GDVGCRTCAGSGRM----ACRSCGGTGTGR   82 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~----------------------~~~~C~~C~G~Gk~----~C~~C~G~G~~r   82 (97)
                      .+.|+.|+|+|.     ..|+ |+|++.                      +..+|+.|.|.|.+    .|+.|.|+|.+-
T Consensus         2 ~~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv~   81 (715)
T COG1107           2 IKKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKVL   81 (715)
T ss_pred             CccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeEE
Confidence            468999999994     6799 999731                      24699999999998    999999999886

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=97.50  E-value=0.0001  Score=46.37  Aligned_cols=34  Identities=38%  Similarity=0.889  Sum_probs=24.4

Q ss_pred             cc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351           49 CM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR   82 (97)
Q Consensus        49 C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r   82 (97)
                      |+ |+|++.    ...+|+.|+|+|++               .|+.|+|+|.+.
T Consensus         1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i   54 (66)
T PF00684_consen    1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII   54 (66)
T ss_dssp             -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-
T ss_pred             CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE
Confidence            78 998742    47899999999974               799999999873

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00014  Score=59.26  Aligned_cols=57  Identities=30%  Similarity=0.709  Sum_probs=46.1

Q ss_pred             CCCCCCCcCCcc-----cccc-cCccc--------------CCcccCCCCCCCeee-----eCCCCCccceee---eEEE
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWS--------------DGDVGCRTCAGSGRM-----ACRSCGGTGTGR---PLPV   86 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~--------------~~~~~C~~C~G~Gk~-----~C~~C~G~G~~r---~v~v   86 (97)
                      ...|+.|+|+|.     ..|. |.|++              +.+..|..|+|+|..     +|+.|.|+++++   -+.|
T Consensus       127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v  206 (337)
T KOG0712|consen  127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEV  206 (337)
T ss_pred             CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeec
Confidence            678999999993     5699 99962              147899999999997     999999999998   5555


Q ss_pred             EEEee
Q 034351           87 QLSVR   91 (97)
Q Consensus        87 ~I~~~   91 (97)
                      +|+..
T Consensus       207 ~V~~g  211 (337)
T KOG0712|consen  207 HVEPG  211 (337)
T ss_pred             cccCC
Confidence            55443

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00023  Score=58.72  Aligned_cols=42  Identities=38%  Similarity=0.848  Sum_probs=34.6

Q ss_pred             CccCCCCCCCCCCCcCCcc-------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           28 QKPMAGPFDRCPSCNGTGR-------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG~-------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      .+|.+ ..++|+.|+|+|.             .+|+ |+|+++ ...+|++|+|.|++
T Consensus       153 ak~gt-~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v  209 (371)
T COG0484         153 AKPGT-DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRV  209 (371)
T ss_pred             CCCCC-CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeE
Confidence            45555 4789999999992             6799 999864 47899999999984

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=97.19  E-value=0.0005  Score=51.96  Aligned_cols=26  Identities=38%  Similarity=0.971  Sum_probs=23.2

Q ss_pred             CcccCCCCCCCeee-----eCCCCCccceee
Q 034351           57 GDVGCRTCAGSGRM-----ACRSCGGTGTGR   82 (97)
Q Consensus        57 ~~~~C~~C~G~Gk~-----~C~~C~G~G~~r   82 (97)
                      ...+|+.|+|+|++     +|+.|+|+|+++
T Consensus        98 ~~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~  128 (186)
T TIGR02642        98 NSCKCPRCRGTGLIQRRQRECDTCAGTGRFR  128 (186)
T ss_pred             cCCcCCCCCCeeEEecCCCCCCCCCCccEEe
Confidence            36899999999987     499999999998

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00089  Score=53.64  Aligned_cols=48  Identities=29%  Similarity=0.689  Sum_probs=41.1

Q ss_pred             CccCCCCCCCCCCCcCCcccccc-cCccc-------C--CcccCCCCCCCeeeeCCCCC
Q 034351           28 QKPMAGPFDRCPSCNGTGRVTCM-CTRWS-------D--GDVGCRTCAGSGRMACRSCG   76 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~-------~--~~~~C~~C~G~Gk~~C~~C~   76 (97)
                      ..| ......|+.|.|.+...|. |||+.       +  ...+|+.|+-.|-++|+.|.
T Consensus       223 ~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~Cs  280 (281)
T KOG2824|consen  223 GIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVCS  280 (281)
T ss_pred             cCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCccC
Confidence            566 5556899999999999999 99972       1  46899999999999999996

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=96.88  E-value=0.001  Score=48.19  Aligned_cols=45  Identities=24%  Similarity=0.566  Sum_probs=32.0

Q ss_pred             CccCCCCCCCCCCCcCCcccccc-cCcccC----------CcccCCCCCCCeeeeC
Q 034351           28 QKPMAGPFDRCPSCNGTGRVTCM-CTRWSD----------GDVGCRTCAGSGRMAC   72 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG~~~C~-C~Gs~~----------~~~~C~~C~G~Gk~~C   72 (97)
                      ..|.......|..|.|.+.+.|. |+|+..          ...+|+.|+-.|.++|
T Consensus        92 ~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          92 GIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             hcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence            44666667889999999999999 999721          1345666655555544

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.88  E-value=0.001  Score=46.73  Aligned_cols=21  Identities=38%  Similarity=0.947  Sum_probs=10.7

Q ss_pred             ccc-cCcccCCcccCCCCCCCeee
Q 034351           48 TCM-CTRWSDGDVGCRTCAGSGRM   70 (97)
Q Consensus        48 ~C~-C~Gs~~~~~~C~~C~G~Gk~   70 (97)
                      .|+ |+|++  ...|..|.|.|.+
T Consensus        77 ~C~~C~G~G--k~~C~~C~G~G~~   98 (111)
T PLN03165         77 KCINCDGAG--SLTCTTCQGSGIQ   98 (111)
T ss_pred             ECCCCCCcc--eeeCCCCCCCEEE
Confidence            455 55552  2345555555543

>PRK14279 chaperone protein DnaJ; Provisional

Probab=96.45  E-value=0.0023  Score=52.18  Aligned_cols=36  Identities=36%  Similarity=0.795  Sum_probs=28.5

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r   82 (97)
                      ..|+ |+|++.    ...+|+.|+|+|.+           .|+.|+|+|.+.
T Consensus       174 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i  225 (392)
T PRK14279        174 APCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII  225 (392)
T ss_pred             ccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe
Confidence            6799 998742    35789999999864           799999999875

>PRK14300 chaperone protein DnaJ; Provisional

Probab=96.42  E-value=0.0023  Score=51.78  Aligned_cols=11  Identities=36%  Similarity=1.057  Sum_probs=5.6

Q ss_pred             ccCCCCCCCee
Q 034351           59 VGCRTCAGSGR   69 (97)
Q Consensus        59 ~~C~~C~G~Gk   69 (97)
                      .+|+.|+|+|+
T Consensus       163 ~~C~~C~G~G~  173 (372)
T PRK14300        163 TTCDACSGVGA  173 (372)
T ss_pred             ccCCCccCeEE
Confidence            44555555553

>PRK14296 chaperone protein DnaJ; Provisional

Probab=96.40  E-value=0.0027  Score=51.49  Aligned_cols=36  Identities=31%  Similarity=0.846  Sum_probs=30.0

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|+.|+|.|.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v  218 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKY  218 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEE
Confidence            578999999994               3799 999854 46789999999964

>PRK14284 chaperone protein DnaJ; Provisional

Probab=96.38  E-value=0.0025  Score=51.80  Aligned_cols=35  Identities=34%  Similarity=0.816  Sum_probs=21.0

Q ss_pred             CCCCCCCcCCcc-----------cccc-cCcccC-CcccCCCCCCCee
Q 034351           35 FDRCPSCNGTGR-----------VTCM-CTRWSD-GDVGCRTCAGSGR   69 (97)
Q Consensus        35 ~~~C~~C~GsG~-----------~~C~-C~Gs~~-~~~~C~~C~G~Gk   69 (97)
                      ...|+.|+|+|.           .+|+ |+|++. ...+|+.|+|.|.
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  222 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGR  222 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcce
Confidence            456666666664           3566 666643 3455666666665

>PRK14298 chaperone protein DnaJ; Provisional

Probab=96.37  E-value=0.003  Score=51.27  Aligned_cols=36  Identities=39%  Similarity=1.031  Sum_probs=30.2

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|+.|+|.|.+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  210 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKV  210 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEE
Confidence            578999999994               4699 999864 46789999999974

>PRK14285 chaperone protein DnaJ; Provisional

Probab=96.26  E-value=0.0036  Score=50.56  Aligned_cols=35  Identities=37%  Similarity=0.836  Sum_probs=18.8

Q ss_pred             CCCCCCCcCCcc-----------cccc-cCcccC-CcccCCCCCCCee
Q 034351           35 FDRCPSCNGTGR-----------VTCM-CTRWSD-GDVGCRTCAGSGR   69 (97)
Q Consensus        35 ~~~C~~C~GsG~-----------~~C~-C~Gs~~-~~~~C~~C~G~Gk   69 (97)
                      ...|+.|+|+|.           .+|+ |+|++. ...+|..|+|.|.
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  210 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGS  210 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCE
Confidence            345666666652           2466 666532 2445666666664

>PRK10767 chaperone protein DnaJ; Provisional

Probab=96.25  E-value=0.0037  Score=50.32  Aligned_cols=34  Identities=41%  Similarity=1.058  Sum_probs=19.6

Q ss_pred             CCCCCCcCCccc-----------ccc-cCcccC-CcccCCCCCCCee
Q 034351           36 DRCPSCNGTGRV-----------TCM-CTRWSD-GDVGCRTCAGSGR   69 (97)
Q Consensus        36 ~~C~~C~GsG~~-----------~C~-C~Gs~~-~~~~C~~C~G~Gk   69 (97)
                      ..|+.|+|+|.+           +|+ |+|++. ....|..|+|.|.
T Consensus       160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~  206 (371)
T PRK10767        160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGR  206 (371)
T ss_pred             ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCce
Confidence            456666666642           366 666532 2455666666665

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]

Probab=96.19  E-value=0.0024  Score=56.09  Aligned_cols=30  Identities=30%  Similarity=0.877  Sum_probs=20.1

Q ss_pred             cccc-cCcccC--CcccCCCCCCCeee-eCCCCC
Q 034351           47 VTCM-CTRWSD--GDVGCRTCAGSGRM-ACRSCG   76 (97)
Q Consensus        47 ~~C~-C~Gs~~--~~~~C~~C~G~Gk~-~C~~C~   76 (97)
                      ..|+ |+|++.  ...+|+.|+|+|++ .|..|+
T Consensus        54 ~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG   87 (715)
T COG1107          54 IPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICG   87 (715)
T ss_pred             CCCCeeccceeEEEEeecccCCCceeEEeecccc
Confidence            4677 777643  46778888888876 555553

>PRK14301 chaperone protein DnaJ; Provisional

Probab=96.11  E-value=0.0043  Score=50.26  Aligned_cols=36  Identities=39%  Similarity=0.845  Sum_probs=26.9

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r   82 (97)
                      ..|. |+|++.    ....|+.|+|+|++           +|+.|+|.|.+.
T Consensus       145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~  196 (373)
T PRK14301        145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI  196 (373)
T ss_pred             ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec
Confidence            5688 888742    24678888888863           788888888764

>PRK14282 chaperone protein DnaJ; Provisional

Probab=96.08  E-value=0.0052  Score=49.59  Aligned_cols=36  Identities=44%  Similarity=1.020  Sum_probs=29.8

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|..|+|.|.+
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  221 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRI  221 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeE
Confidence            678999999994               3699 999854 46789999999963

>PRK14289 chaperone protein DnaJ; Provisional

Probab=96.07  E-value=0.005  Score=49.85  Aligned_cols=37  Identities=32%  Similarity=0.863  Sum_probs=30.6

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|+.|+|+|.               ..|+ |+|++. ....|..|+|.|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEE
Confidence            3688999999995               3699 999854 46789999999974

>PRK14280 chaperone protein DnaJ; Provisional

Probab=96.07  E-value=0.0047  Score=50.03  Aligned_cols=36  Identities=33%  Similarity=0.854  Sum_probs=30.0

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|+.|+|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKV  212 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEE
Confidence            578999999984               3699 999864 36789999999974

>PRK14297 chaperone protein DnaJ; Provisional

Probab=96.05  E-value=0.0051  Score=49.80  Aligned_cols=36  Identities=31%  Similarity=0.867  Sum_probs=28.7

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r   82 (97)
                      ..|. |+|++.    ...+|+.|+|+|++               +|+.|+|+|.+.
T Consensus       149 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  204 (380)
T PRK14297        149 ENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI  204 (380)
T ss_pred             ccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc
Confidence            6799 999742    35789999999853               699999999875

>PRK14278 chaperone protein DnaJ; Provisional

Probab=96.04  E-value=0.0044  Score=50.27  Aligned_cols=36  Identities=33%  Similarity=0.786  Sum_probs=29.8

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|+.|+|.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeE
Confidence            578999999994               4699 999854 35789999999974

>PRK14286 chaperone protein DnaJ; Provisional

Probab=96.02  E-value=0.0042  Score=50.30  Aligned_cols=11  Identities=45%  Similarity=1.081  Sum_probs=5.2

Q ss_pred             eCCCCCcccee
Q 034351           71 ACRSCGGTGTG   81 (97)
Q Consensus        71 ~C~~C~G~G~~   81 (97)
                      +|..|+|+|.+
T Consensus       191 ~C~~C~G~G~~  201 (372)
T PRK14286        191 TCPTCRGKGTV  201 (372)
T ss_pred             eCCCCCceeeE
Confidence            34555544443

>PRK14288 chaperone protein DnaJ; Provisional

Probab=95.99  E-value=0.0052  Score=49.74  Aligned_cols=22  Identities=27%  Similarity=0.764  Sum_probs=10.4

Q ss_pred             ccc-cCcccC---CcccCCCCCCCee
Q 034351           48 TCM-CTRWSD---GDVGCRTCAGSGR   69 (97)
Q Consensus        48 ~C~-C~Gs~~---~~~~C~~C~G~Gk   69 (97)
                      .|. |+|++.   ...+|+.|+|+|.
T Consensus       142 ~C~~C~G~G~~~~~~~~C~~C~G~G~  167 (369)
T PRK14288        142 VCESCDGTGAKDKALETCKQCNGQGQ  167 (369)
T ss_pred             cCCCCCCcccCCCCCcCCCCCCCCcE
Confidence            455 555421   2345555555553

>PRK14291 chaperone protein DnaJ; Provisional

Probab=95.94  E-value=0.0048  Score=50.06  Aligned_cols=23  Identities=43%  Similarity=0.894  Sum_probs=11.1

Q ss_pred             cccc-cCcccC----CcccCCCCCCCee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGR   69 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk   69 (97)
                      ..|. |+|++.    ....|+.|+|+|.
T Consensus       157 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~  184 (382)
T PRK14291        157 VPCEACGGTGYDPGSGEKVCPTCGGSGE  184 (382)
T ss_pred             ccCCCCccccCCCCCCCccCCCCCCceE
Confidence            4555 555421    2345555555553

>PRK14295 chaperone protein DnaJ; Provisional

Probab=95.94  E-value=0.0062  Score=49.66  Aligned_cols=36  Identities=31%  Similarity=0.766  Sum_probs=28.0

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCccceee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r   82 (97)
                      ..|. |+|++.    ...+|+.|+|+|.+           +|+.|+|+|.+.
T Consensus       167 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~  218 (389)
T PRK14295        167 APCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA  218 (389)
T ss_pred             ccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe
Confidence            5698 998742    35789999999863           799999999764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=95.90  E-value=0.0061  Score=49.12  Aligned_cols=37  Identities=35%  Similarity=0.935  Sum_probs=30.7

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|+.|+|+|.               .+|+ |+|.+. ....|+.|+|.|.+
T Consensus       164 ~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  217 (365)
T PRK14290        164 KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTV  217 (365)
T ss_pred             CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeE
Confidence            3678999999994               4799 999854 46789999999984

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=95.89  E-value=0.0069  Score=50.22  Aligned_cols=36  Identities=36%  Similarity=0.831  Sum_probs=29.3

Q ss_pred             cccc-cCcccC---CcccCCCCCCCee---------------eeCCCCCccceee
Q 034351           47 VTCM-CTRWSD---GDVGCRTCAGSGR---------------MACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~---~~~~C~~C~G~Gk---------------~~C~~C~G~G~~r   82 (97)
                      ..|. |+|++.   ...+|+.|+|+|.               ..|+.|+|+|.+.
T Consensus       151 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i  205 (421)
T PTZ00037        151 VICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKII  205 (421)
T ss_pred             ccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceec
Confidence            6799 999742   3578999999994               2899999999874

>PRK14276 chaperone protein DnaJ; Provisional

Probab=95.86  E-value=0.007  Score=49.07  Aligned_cols=36  Identities=36%  Similarity=0.764  Sum_probs=30.0

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ...+|..|+|.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEE
Confidence            578999999984               3699 999864 46789999999974

>PRK14277 chaperone protein DnaJ; Provisional

Probab=95.85  E-value=0.0067  Score=49.29  Aligned_cols=37  Identities=38%  Similarity=0.838  Sum_probs=30.5

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|+.|+|+|.               .+|+ |+|++. ....|..|+|.|.+
T Consensus       171 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  224 (386)
T PRK14277        171 KPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRI  224 (386)
T ss_pred             CCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEE
Confidence            3678999999984               3699 999854 46789999999974

>PRK14292 chaperone protein DnaJ; Provisional

Probab=95.68  E-value=0.01  Score=47.79  Aligned_cols=37  Identities=35%  Similarity=0.855  Sum_probs=30.7

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|..|+|+|.               .+|+ |+|++. ....|..|.|.|.+
T Consensus       156 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  209 (371)
T PRK14292        156 PPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRT  209 (371)
T ss_pred             CCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEE
Confidence            4688999999994               3699 999854 46889999999964

>PRK14287 chaperone protein DnaJ; Provisional

Probab=95.61  E-value=0.0094  Score=48.28  Aligned_cols=36  Identities=36%  Similarity=0.788  Sum_probs=27.5

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee---------------eCCCCCccceee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM---------------ACRSCGGTGTGR   82 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~---------------~C~~C~G~G~~r   82 (97)
                      ..|. |+|++.    ...+|+.|+|+|.+               .|+.|.|+|.+.
T Consensus       139 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~  194 (371)
T PRK14287        139 ETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII  194 (371)
T ss_pred             ccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc
Confidence            5698 998742    35679999999853               699999999764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=95.60  E-value=0.0086  Score=48.26  Aligned_cols=22  Identities=41%  Similarity=0.868  Sum_probs=9.7

Q ss_pred             ccc-cCcccC-CcccCCCCCCCee
Q 034351           48 TCM-CTRWSD-GDVGCRTCAGSGR   69 (97)
Q Consensus        48 ~C~-C~Gs~~-~~~~C~~C~G~Gk   69 (97)
                      +|+ |+|++. ....|..|+|.|.
T Consensus       185 ~C~~C~G~G~~~~~~C~~C~G~g~  208 (366)
T PRK14294        185 TCPRCRGMGKVIVSPCKTCHGQGR  208 (366)
T ss_pred             eCCCCCCcCeecCcCCCCCCCceE
Confidence            355 555432 2334555555443

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=95.56  E-value=0.0094  Score=47.54  Aligned_cols=36  Identities=42%  Similarity=0.919  Sum_probs=30.0

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ....|..|+|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRV  212 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEe
Confidence            678999999983               4799 999854 35689999999974

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=95.52  E-value=0.0095  Score=48.65  Aligned_cols=37  Identities=30%  Similarity=0.786  Sum_probs=30.5

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|+.|+|+|.               .+|+ |+|++. ....|..|+|.|.+
T Consensus       178 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  231 (397)
T PRK14281        178 ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIK  231 (397)
T ss_pred             CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccE
Confidence            3678999999994               3699 999854 46789999999974

>PRK14293 chaperone protein DnaJ; Provisional

Probab=95.35  E-value=0.011  Score=47.67  Aligned_cols=36  Identities=28%  Similarity=0.749  Sum_probs=29.7

Q ss_pred             CCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|.               .+|+ |+|++. ...+|..|+|.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  212 (374)
T PRK14293        160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVK  212 (374)
T ss_pred             CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCccc
Confidence            578999999994               3699 999854 35689999999964

>PRK14283 chaperone protein DnaJ; Provisional

Probab=95.10  E-value=0.019  Score=46.43  Aligned_cols=37  Identities=35%  Similarity=0.899  Sum_probs=30.4

Q ss_pred             CCCCCCCCcCCcc---------------cccc-cCcccC-CcccCCCCCCCeee
Q 034351           34 PFDRCPSCNGTGR---------------VTCM-CTRWSD-GDVGCRTCAGSGRM   70 (97)
Q Consensus        34 ~~~~C~~C~GsG~---------------~~C~-C~Gs~~-~~~~C~~C~G~Gk~   70 (97)
                      ....|+.|+|+|.               .+|+ |+|++. ...+|..|+|.|.+
T Consensus       162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v  215 (378)
T PRK14283        162 EVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVV  215 (378)
T ss_pred             CCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceee
Confidence            3678999999985               3599 999854 36789999999974

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.34  E-value=0.024  Score=44.90  Aligned_cols=60  Identities=25%  Similarity=0.643  Sum_probs=45.6

Q ss_pred             CCCCCCCCCcCCcc------cccc-cCcccC--------C-cccCCCCCCCeee---eCCCCCccceee-eEEEEEEeeC
Q 034351           33 GPFDRCPSCNGTGR------VTCM-CTRWSD--------G-DVGCRTCAGSGRM---ACRSCGGTGTGR-PLPVQLSVRR   92 (97)
Q Consensus        33 ~~~~~C~~C~GsG~------~~C~-C~Gs~~--------~-~~~C~~C~G~Gk~---~C~~C~G~G~~r-~v~v~I~~~~   92 (97)
                      .....|..|.|.|.      ..|. |.|.+.        . ..+|..|+|.|.+   .|..|.|.|.++ ...|.|.+..
T Consensus       162 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~  241 (288)
T KOG0715|consen  162 NVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPA  241 (288)
T ss_pred             EeecccccccCcCcccccccccchhhhCcccccccccCCcceeecccccccceeccchHHHhhcchhhhhheeEEeecCc
Confidence            34679999999993      7799 999751        1 2369999999998   699999999776 4455554443

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=93.83  E-value=0.034  Score=42.07  Aligned_cols=29  Identities=45%  Similarity=1.027  Sum_probs=16.3

Q ss_pred             CCCCCCCcCCcccccccCcccCCcccCCCCCCCeee
Q 034351           35 FDRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRM   70 (97)
Q Consensus        35 ~~~C~~C~GsG~~~C~C~Gs~~~~~~C~~C~G~Gk~   70 (97)
                      ...|+.|+|+|...       ....+|+.|+|+|++
T Consensus        99 ~~~C~~C~G~G~~i-------~~~~~C~~C~G~G~v  127 (186)
T TIGR02642        99 SCKCPRCRGTGLIQ-------RRQRECDTCAGTGRF  127 (186)
T ss_pred             CCcCCCCCCeeEEe-------cCCCCCCCCCCccEE
Confidence            44555555555321       012567888888875

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.46  E-value=0.23  Score=40.78  Aligned_cols=43  Identities=26%  Similarity=0.727  Sum_probs=34.2

Q ss_pred             CccCCCCCCCCCCCcCCc----------------ccccc-cCcccC---CcccCCCCCCCeee
Q 034351           28 QKPMAGPFDRCPSCNGTG----------------RVTCM-CTRWSD---GDVGCRTCAGSGRM   70 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG----------------~~~C~-C~Gs~~---~~~~C~~C~G~Gk~   70 (97)
                      +-+.+....+|+.|.|+|                ...|. |+|++.   ....|+.|.|++.+
T Consensus       136 sGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v  198 (337)
T KOG0712|consen  136 SGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVV  198 (337)
T ss_pred             CCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhh
Confidence            344455677999999999                27899 999843   46799999999975

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=86.62  E-value=0.64  Score=33.61  Aligned_cols=19  Identities=37%  Similarity=0.716  Sum_probs=9.7

Q ss_pred             ccc-cCcccCCcccCCCCCCCe
Q 034351           48 TCM-CTRWSDGDVGCRTCAGSG   68 (97)
Q Consensus        48 ~C~-C~Gs~~~~~~C~~C~G~G   68 (97)
                      .|. |.|.  .-.+|..|+|+=
T Consensus       101 ~C~~Cgg~--rfv~C~~C~Gs~  120 (147)
T cd03031         101 VCEGCGGA--RFVPCSECNGSC  120 (147)
T ss_pred             CCCCCCCc--CeEECCCCCCcc
Confidence            355 5554  235555555543

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional

Probab=84.97  E-value=1.6  Score=35.39  Aligned_cols=42  Identities=29%  Similarity=0.751  Sum_probs=27.0

Q ss_pred             CccCCCCCCCCCCCcCC------------c--ccccc-cCc-ccCCcccCCCCCCCee
Q 034351           28 QKPMAGPFDRCPSCNGT------------G--RVTCM-CTR-WSDGDVGCRTCAGSGR   69 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~Gs------------G--~~~C~-C~G-s~~~~~~C~~C~G~Gk   69 (97)
                      .+|.......|+.|.+.            |  +..|. |.- |......|+.|+-+++
T Consensus       180 ~~~~~~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~  237 (309)
T PRK03564        180 RAEYGEQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGK  237 (309)
T ss_pred             ccccccCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCc
Confidence            34444457889999765            1  35688 775 4445778888876554

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=84.71  E-value=0.89  Score=36.71  Aligned_cols=36  Identities=28%  Similarity=0.588  Sum_probs=27.3

Q ss_pred             ccccc-cCcccCCcccCCCCCCCeee-----------eCCCCCccceeee
Q 034351           46 RVTCM-CTRWSDGDVGCRTCAGSGRM-----------ACRSCGGTGTGRP   83 (97)
Q Consensus        46 ~~~C~-C~Gs~~~~~~C~~C~G~Gk~-----------~C~~C~G~G~~r~   83 (97)
                      ...|. |.|.  .-.+|..|+|+=++           +|..|+=.|.+|+
T Consensus       229 ~~~C~~CGg~--rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrC  276 (281)
T KOG2824|consen  229 GGVCESCGGA--RFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRC  276 (281)
T ss_pred             CCcCCCcCCc--ceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeC
Confidence            35688 8886  35788888887664           7888888888874

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=84.71  E-value=0.77  Score=41.07  Aligned_cols=43  Identities=26%  Similarity=0.770  Sum_probs=35.1

Q ss_pred             CCCCCCCCCcCCcc-cccc-cCcc-----cCCcccCCCCCCCeee--eCCCCCcc
Q 034351           33 GPFDRCPSCNGTGR-VTCM-CTRW-----SDGDVGCRTCAGSGRM--ACRSCGGT   78 (97)
Q Consensus        33 ~~~~~C~~C~GsG~-~~C~-C~Gs-----~~~~~~C~~C~G~Gk~--~C~~C~G~   78 (97)
                      .+...|.+|.   + .+|+ |..+     ..+...|+.|+-...+  .|+.|++.
T Consensus       433 s~~l~C~~Cg---~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~  484 (730)
T COG1198         433 APLLLCRDCG---YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE  484 (730)
T ss_pred             cceeecccCC---CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence            4478899993   5 5799 9996     2368899999999766  89999988

>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []

Probab=81.86  E-value=1.1  Score=34.84  Aligned_cols=47  Identities=28%  Similarity=0.769  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCcCC------------c--ccccc-cCc-ccCCcccCCCCCCCeee----------------eCCCCCcc
Q 034351           32 AGPFDRCPSCNGT------------G--RVTCM-CTR-WSDGDVGCRTCAGSGRM----------------ACRSCGGT   78 (97)
Q Consensus        32 s~~~~~C~~C~Gs------------G--~~~C~-C~G-s~~~~~~C~~C~G~Gk~----------------~C~~C~G~   78 (97)
                      ......|+.|.+.            |  +..|. |+- |......|+.|+-+...                .|.+|++.
T Consensus       169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~~~e~~~~~rve~C~~C~~Y  247 (290)
T PF04216_consen  169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEKLEYFTVEGEPAYRVEVCESCGSY  247 (290)
T ss_dssp             -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-EEE--------SEEEEEETTTTEE
T ss_pred             CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcceeeEecCCCCcEEEEECCcccch
Confidence            3346799999765            4  36798 886 45567889999877652                79999753

The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=81.03  E-value=0.83  Score=41.67  Aligned_cols=30  Identities=33%  Similarity=0.808  Sum_probs=19.7

Q ss_pred             ccCCCCCCCeee------------eCCCCCccceee-eEEEEE
Q 034351           59 VGCRTCAGSGRM------------ACRSCGGTGTGR-PLPVQL   88 (97)
Q Consensus        59 ~~C~~C~G~Gk~------------~C~~C~G~G~~r-~v~v~I   88 (97)
                      .+|+.|.|.|.+            +|+.|+|+.+.. .+.|++
T Consensus       737 G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~  779 (924)
T TIGR00630       737 GRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKY  779 (924)
T ss_pred             CCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhcee
Confidence            457777777764            788888877766 344443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	97
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	98.99
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	98.86
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	98.83
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.81
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	97.71
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	97.5
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	97.42
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	97.03
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	95.55
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	95.22

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=7.6e-11  Score=78.38  Aligned_cols=49  Identities=35%  Similarity=0.876  Sum_probs=42.5

Q ss_pred             CCCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee
Q 034351           34 PFDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        34 ~~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      +...|+.|+|+|.      .+|+ |+|+++         ...+|+.|+|+|++   +|+.|+|+|+++
T Consensus        27 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           27 IMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAK   94 (104)
T ss_dssp             CCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSSSSCSEEC
T ss_pred             eeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCCCCeeEEE
Confidence            3689999999993      6899 999742         25799999999998   899999999997

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=98.86  E-value=5.5e-10  Score=70.28  Aligned_cols=49  Identities=31%  Similarity=0.846  Sum_probs=41.9

Q ss_pred             CCCCCCCCcCCcc------cccc-cCcccCC---------cccCCCCCCCeee---eCCCCCccceee
Q 034351           34 PFDRCPSCNGTGR------VTCM-CTRWSDG---------DVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        34 ~~~~C~~C~GsG~------~~C~-C~Gs~~~---------~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      +...|+.|+|+|.      .+|+ |+|++..         ..+|+.|+|+|++   +|+.|+|.|+++
T Consensus        10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~   77 (79)
T 1exk_A           10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             cceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence            3679999999994      5899 9998431         3699999999998   999999999875

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=98.83  E-value=3.2e-09  Score=80.13  Aligned_cols=59  Identities=25%  Similarity=0.607  Sum_probs=46.8

Q ss_pred             CCCCCCCcCCc-----ccccc-cCcccC-------------CcccCCCCCCCeee-----eCCCCCccceee-eEEEEEE
Q 034351           35 FDRCPSCNGTG-----RVTCM-CTRWSD-------------GDVGCRTCAGSGRM-----ACRSCGGTGTGR-PLPVQLS   89 (97)
Q Consensus        35 ~~~C~~C~GsG-----~~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~-----~C~~C~G~G~~r-~v~v~I~   89 (97)
                      ...|+.|+|+|     ..+|+ |+|+++             ...+|+.|+|+|++     +|+.|+|+|+++ ..+++|.
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~  117 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVH  117 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEEEEEEEEE
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceEeeeEEEEEE
Confidence            56899999999     37899 999742             36799999999954     899999999997 4555555


Q ss_pred             eeCC
Q 034351           90 VRRP   93 (97)
Q Consensus        90 ~~~~   93 (97)
                      +.++
T Consensus       118 Ip~G  121 (248)
T 1nlt_A          118 VEPG  121 (248)
T ss_dssp             ECTT
T ss_pred             ECCC
Confidence            5443

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.81  E-value=1.2e-05  Score=50.11  Aligned_cols=35  Identities=37%  Similarity=0.801  Sum_probs=20.7

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCcccee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTG   81 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~   81 (97)
                      ..|+ |+|++.    ...+|+.|+|+|++           +|+.|+|+|.+
T Consensus        12 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~   62 (79)
T 1exk_A           12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL   62 (79)
T ss_dssp             EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE
T ss_pred             eECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE
Confidence            4566 666532    13566666666643           56666666655

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=97.71  E-value=1.9e-05  Score=47.82  Aligned_cols=25  Identities=40%  Similarity=0.889  Sum_probs=22.6

Q ss_pred             cccCCCCCCCeee---eCCCCCccceee
Q 034351           58 DVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        58 ~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      ..+|+.|+|+|++   +|+.|+|+|+++
T Consensus         9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            9 ETTCPNCNGSGREEPEPCPKCLGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSCEETTEECTTTTTSSEEE
T ss_pred             eccCcCCcccccCCCCcCCCCCCcEEEE
Confidence            5789999999996   999999999876

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=5.3e-05  Score=49.88  Aligned_cols=35  Identities=40%  Similarity=0.865  Sum_probs=17.3

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCcccee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTG   81 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~   81 (97)
                      ..|+ |+|++.    ...+|+.|+|+|++           .|+.|+|.|.+
T Consensus        29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~   79 (104)
T 2ctt_A           29 DTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI   79 (104)
T ss_dssp             EECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE
T ss_pred             eECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE
Confidence            4555 555421    13455555555532           45555555544

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=97.42  E-value=8e-05  Score=45.04  Aligned_cols=25  Identities=32%  Similarity=0.918  Sum_probs=21.0

Q ss_pred             cccCCCCCCCeee---eCCCCCccceee
Q 034351           58 DVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        58 ~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      ..+|+.|+|+|++   +|+.|+|+|+++
T Consensus         9 ~~~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            9 EVACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             cccCCCCcceeccCCCCCccCCCCccEE
Confidence            4678888888876   899999999876

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=97.03  E-value=0.00049  Score=51.64  Aligned_cols=41  Identities=34%  Similarity=0.711  Sum_probs=32.6

Q ss_pred             CccCCCCCCCCCCCcCCcc---------------cccc-cCcccC---CcccCCCCCCCeee
Q 034351           28 QKPMAGPFDRCPSCNGTGR---------------VTCM-CTRWSD---GDVGCRTCAGSGRM   70 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~GsG~---------------~~C~-C~Gs~~---~~~~C~~C~G~Gk~   70 (97)
                      ..|.+  ..+|+.|+|+|.               .+|+ |+|++.   ...+|+.|+|.|.+
T Consensus        49 ~~~g~--~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~  108 (248)
T 1nlt_A           49 GKKGA--VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVE  108 (248)
T ss_dssp             BSTTT--CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEE
T ss_pred             CCCCC--CccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccCCCceE
Confidence            34554  489999999994               3699 999853   27899999999974

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=95.55  E-value=0.0045  Score=37.22  Aligned_cols=26  Identities=31%  Similarity=0.937  Sum_probs=16.1

Q ss_pred             CCCCCCcCCcccccccCcccCCcccCCCCCCCeee
Q 034351           36 DRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRM   70 (97)
Q Consensus        36 ~~C~~C~GsG~~~C~C~Gs~~~~~~C~~C~G~Gk~   70 (97)
                      .+|+.|+|+|..         ...+|+.|+|+|++
T Consensus        10 ~~C~~C~GsG~~---------~~~~C~~C~G~G~v   35 (53)
T 2bx9_A           10 VACPKCERAGEI---------EGTPCPACSGKGVI   35 (53)
T ss_dssp             EECTTTTTSSEE---------TTEECTTTTTSSEE
T ss_pred             ccCCCCcceecc---------CCCCCccCCCCccE
Confidence            345555555543         23678888888875

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=95.22  E-value=0.0066  Score=36.46  Aligned_cols=26  Identities=42%  Similarity=1.055  Sum_probs=14.5

Q ss_pred             CCCCCCcCCcccccccCcccCCcccCCCCCCCeee
Q 034351           36 DRCPSCNGTGRVTCMCTRWSDGDVGCRTCAGSGRM   70 (97)
Q Consensus        36 ~~C~~C~GsG~~~C~C~Gs~~~~~~C~~C~G~Gk~   70 (97)
                      .+|+.|+|+|..         ...+|+.|+|.|.+
T Consensus        10 ~~C~~C~GsG~~---------i~~~C~~C~G~G~v   35 (53)
T 3lcz_A           10 TTCPNCNGSGRE---------EPEPCPKCLGKGVI   35 (53)
T ss_dssp             EECTTTTTSCEE---------TTEECTTTTTSSEE
T ss_pred             ccCcCCcccccC---------CCCcCCCCCCcEEE
Confidence            456666666642         13556666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	97
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	98.96
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	98.87
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	97.67
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	97.54
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	96.91
d1m1qa_	90	Flavocytochrome c3 (respiratory fumarate reductase	91.0
d2fiya1	290	FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId	81.32

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=6.7e-11  Score=74.43  Aligned_cols=49  Identities=31%  Similarity=0.846  Sum_probs=42.1

Q ss_pred             CCCCCCCCcCCcc------cccc-cCcccC---------CcccCCCCCCCeee---eCCCCCccceee
Q 034351           34 PFDRCPSCNGTGR------VTCM-CTRWSD---------GDVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        34 ~~~~C~~C~GsG~------~~C~-C~Gs~~---------~~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      +...|+.|+|+|.      .+|+ |+|+++         ..++|+.|+|+|++   +|+.|+|+|+++
T Consensus        10 ~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~   77 (79)
T d1exka_          10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE   77 (79)
T ss_dssp             CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred             eeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEee
Confidence            4788999999983      6699 999742         36789999999987   999999999886

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.7e-10  Score=70.36  Aligned_cols=48  Identities=29%  Similarity=0.747  Sum_probs=40.3

Q ss_pred             CCCCCCCcCCcc-----cccc-cCcccC-------------CcccCCCCCCCeee-----eCCCCCccceee
Q 034351           35 FDRCPSCNGTGR-----VTCM-CTRWSD-------------GDVGCRTCAGSGRM-----ACRSCGGTGTGR   82 (97)
Q Consensus        35 ~~~C~~C~GsG~-----~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~-----~C~~C~G~G~~r   82 (97)
                      ...|+.|+|+|.     .+|+ |+|++.             ...+|+.|+|+|++     +|+.|+|+|+++
T Consensus         2 ~v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~   73 (74)
T d1nlta3           2 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVEN   73 (74)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEE
T ss_pred             ccCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeC
Confidence            457999999993     6799 999742             36789999999976     799999999876

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.4e-05  Score=49.30  Aligned_cols=35  Identities=37%  Similarity=0.801  Sum_probs=17.5

Q ss_pred             cccc-cCcccC----CcccCCCCCCCeee-----------eCCCCCcccee
Q 034351           47 VTCM-CTRWSD----GDVGCRTCAGSGRM-----------ACRSCGGTGTG   81 (97)
Q Consensus        47 ~~C~-C~Gs~~----~~~~C~~C~G~Gk~-----------~C~~C~G~G~~   81 (97)
                      ..|+ |+|++.    ....|+.|+|+|++           +|+.|+|+|.+
T Consensus        12 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~   62 (79)
T d1exka_          12 EECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL   62 (79)
T ss_dssp             EECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE
T ss_pred             ccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeE
Confidence            3455 555421    23445555555543           45555555554

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=1.9e-05  Score=48.33  Aligned_cols=35  Identities=31%  Similarity=0.772  Sum_probs=28.7

Q ss_pred             cccc-cCcccC---CcccCCCCCCCeee---------------eCCCCCcccee
Q 034351           47 VTCM-CTRWSD---GDVGCRTCAGSGRM---------------ACRSCGGTGTG   81 (97)
Q Consensus        47 ~~C~-C~Gs~~---~~~~C~~C~G~Gk~---------------~C~~C~G~G~~   81 (97)
                      +.|+ |+|++.   ...+|+.|+|+|++               +|+.|+|+|.+
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~   56 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDI   56 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSC
T ss_pred             cCCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEE
Confidence            5799 999842   35689999999963               79999999976

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=96.91  E-value=0.00012  Score=44.95  Aligned_cols=48  Identities=23%  Similarity=0.504  Sum_probs=37.6

Q ss_pred             CCCCCCCcCCcc---------cccc-cCcccC-------------CcccCCCCCCCeee---eCCCCCccceee
Q 034351           35 FDRCPSCNGTGR---------VTCM-CTRWSD-------------GDVGCRTCAGSGRM---ACRSCGGTGTGR   82 (97)
Q Consensus        35 ~~~C~~C~GsG~---------~~C~-C~Gs~~-------------~~~~C~~C~G~Gk~---~C~~C~G~G~~r   82 (97)
                      ...|..|||+|.         ..|. |||...             .-..|..|+|.|+.   .|.+|++.|+..
T Consensus        11 ~~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~~   84 (90)
T d1m1qa_          11 SGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRTS   84 (90)
T ss_dssp             TTCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCCH
T ss_pred             CCCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCccc
Confidence            347999999883         4699 998621             34789999998865   899999999764

>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}

class: All alpha proteins
fold: Multiheme cytochromes
superfamily: Multiheme cytochromes
family: Di-heme elbow motif
domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain
species: Shewanella oneidensis [TaxId: 70863]

Probab=91.00  E-value=0.024  Score=34.03  Aligned_cols=35  Identities=26%  Similarity=0.678  Sum_probs=24.8

Q ss_pred             CCCCCCcCCcc---------------cccc-cCccc-CCcccCCCCCCCeee
Q 034351           36 DRCPSCNGTGR---------------VTCM-CTRWS-DGDVGCRTCAGSGRM   70 (97)
Q Consensus        36 ~~C~~C~GsG~---------------~~C~-C~Gs~-~~~~~C~~C~G~Gk~   70 (97)
                      ..|..|||++.               ..|. |+|.+ .....|..|++.|+.
T Consensus        32 ~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~   83 (90)
T d1m1qa_          32 AQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT   83 (90)
T ss_dssp             HHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred             CcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence            46999999882               3445 55543 246789999999974

>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}

class: Multi-domain proteins (alpha and beta)
fold: FdhE-like
superfamily: FdhE-like
family: FdhE-like
domain: FdhE homolog PA4809
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.32  E-value=1.5  Score=32.02  Aligned_cols=41  Identities=24%  Similarity=0.669  Sum_probs=27.4

Q ss_pred             CccCCCCCCCCCCCcCC-------------c--ccccc-cCc-ccCCcccCCCCCCCe
Q 034351           28 QKPMAGPFDRCPSCNGT-------------G--RVTCM-CTR-WSDGDVGCRTCAGSG   68 (97)
Q Consensus        28 ~~P~s~~~~~C~~C~Gs-------------G--~~~C~-C~G-s~~~~~~C~~C~G~G   68 (97)
                      ..|.......|+.|.+.             |  +..|. |.- |......|+.|+-+.
T Consensus       157 ~~~~~~~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~~C~~Cg~~~  214 (290)
T d2fiya1         157 AVVETESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK  214 (290)
T ss_dssp             CSCCCTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred             ccCCcccCCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccccCCCCCCCC
Confidence            33344446779999762             2  35788 886 555678899997654