Citrus Sinensis ID: 034369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MDLHNKSNNSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRVSGKWTN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHccHcccHHHHHHHHHHcccEEHHHHccHHHHHHHHEEEEEEcccccccccEEEcccccc
Coil and Loop (DISEMBL)
mdlhnksnnsnsIEVIFDSSLNLEQTHLkegydegythglATRKEEAkdvglkhgfetgeELGFYKAVsmsgtrlfisirpgcrpgskrvsgkwtn
Flexible Loop (DISEMBL)
mdlhnksnnsnsiEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLfisirpgcrpgskrvsgkwtn
Low Complexity Region (SEG)
MDLHNKSNNSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRVSGKWTN
Disordered region (IsUnstruct)
**************VIFDSSLNLEQTHLKEGYDEGYTHGLAT******DVGLKHGFETGEELGFYKAVSMSGTRLFISIRPG**************
Disordered Region (DISOPRED)
***************IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLF********************
Disordered Region (DISEMBL)
********NSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGC*************
Disordered Region (DISPRO)
*********SNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRVS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLHNKSNNSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRPGSKRVSGKWTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
255637974	138	unknown [Glycine max]	0.697	0.485	0.647	1e-15
255639485	138	unknown [Glycine max]	0.697	0.485	0.647	1e-15
255553879	144	Oral cancer overexpressed protein, putat	0.604	0.402	0.689	1e-15
388511973	137	unknown [Lotus japonicus]	0.697	0.489	0.617	5e-14
225447254	455	PREDICTED: formimidoyltransferase-cyclod	0.583	0.123	0.660	1e-13
297739272	146	unnamed protein product [Vitis vinifera]	0.666	0.438	0.555	2e-13
224126761	125	predicted protein [Populus trichocarpa]	0.531	0.408	0.725	3e-13
449444394	427	PREDICTED: formimidoyltransferase-cyclod	0.531	0.119	0.725	4e-13
358345129	135	Oral cancer-overexpressed protein-like p	0.697	0.496	0.558	7e-13
388517567	136	unknown [Medicago truncatula]	0.697	0.492	0.558	7e-13

>gi|255637974|gb|ACU19303.1| unknown [Glycine max]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRL 75
          +FDSSLNLE TH KEGYDEGY+HGL T KEEA+ VGLK GFE GEELGFY+      T  
Sbjct: 4  LFDSSLNLEDTHYKEGYDEGYSHGLVTGKEEARQVGLKVGFEVGEELGFYRGCVEIWT-F 62

Query: 76 FISIRPGC 83
           I + P C
Sbjct: 63 AIRLDPTC 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639485|gb|ACU20037.1| unknown [Glycine max]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRL 75
          +FDSSLNLE TH KEGYDEGY+HGL T KEEA+ VGLK GFE GEELGFY+      T  
Sbjct: 4  LFDSSLNLEDTHYKEGYDEGYSHGLVTGKEEARQVGLKVGFEVGEELGFYRGCVEIWTSA 63

Query: 76 FISIRPGC 83
           I + P C
Sbjct: 64 -IRLDPTC 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553879|ref|XP_002517980.1| Oral cancer overexpressed protein, putative [Ricinus communis] gi|223542962|gb|EEF44498.1| Oral cancer overexpressed protein, putative [Ricinus communis]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 9  NSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYK 66
           SNSI+ IFDSSLNLE TH K+GY+EGY+HGL + KEE++ VGLK GFE GEE+GFY+
Sbjct: 6  QSNSIQDIFDSSLNLEDTHFKQGYEEGYSHGLISGKEESRQVGLKTGFEVGEEVGFYQ 63

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511973|gb|AFK44048.1| unknown [Lotus japonicus]

 Score = 82.0 bits (201), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRL 75
          +FDSSLNLE+TH KEGYDEGY  GL   K+EAK+VGLK GFE GEELGFY       T  
Sbjct: 4  LFDSSLNLEETHFKEGYDEGYKDGLIAGKDEAKEVGLKVGFEVGEELGFYSGCLHIWTSA 63

Query: 76 FISIRPGC 83
           I + P C
Sbjct: 64 -IRLDPNC 70

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447254|ref|XP_002272923.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/56 (66%), Positives = 44/56 (78%)

Query: 12 SIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKA 67
          SI+ IFDSSLNLE+TH  +G+ EGY  GL + KEEAK VGLK GF+ GEELGFY+ 
Sbjct: 18 SIQDIFDSSLNLEETHFNDGFTEGYNAGLISGKEEAKQVGLKFGFQVGEELGFYRG 73

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739272|emb|CBI28923.3| unnamed protein product [Vitis vinifera]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 8/72 (11%)

Query: 12 SIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYK----- 66
          SI+ IFDSSLNLE+TH  +G+ EGY  GL + KEEAK VGLK GF+ GEELGFY+     
Sbjct: 18 SIQDIFDSSLNLEETHFNDGFTEGYNAGLISGKEEAKQVGLKFGFQVGEELGFYRGCVDV 77

Query: 67 ---AVSMSGTRL 75
             A+ +  TR 
Sbjct: 78 WNSAIEVDSTRF 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126761|ref|XP_002319920.1| predicted protein [Populus trichocarpa] gi|222858296|gb|EEE95843.1| predicted protein [Populus trichocarpa]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYK 66
          IFDSSLNLE+TH KEGY+EGY+ GL + KEEA+  GLK GFE GEELGFY+
Sbjct: 2  IFDSSLNLEETHFKEGYNEGYSQGLMSGKEEAEQTGLKMGFEIGEELGFYR 52

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444394|ref|XP_004139960.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus] gi|449475733|ref|XP_004154536.1| PREDICTED: formimidoyltransferase-cyclodeaminase-like [Cucumis sativus]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 41/51 (80%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYK 66
          IFDSSLNLE+ HLKEGY +GY  GL   KEEA+ VGLK GFE GEELGFY+
Sbjct: 4  IFDSSLNLEEAHLKEGYADGYKDGLVAGKEEAEQVGLKVGFEVGEELGFYR 54

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345129|ref|XP_003636635.1| Oral cancer-overexpressed protein-like protein [Medicago truncatula] gi|355502570|gb|AES83773.1| Oral cancer-overexpressed protein-like protein [Medicago truncatula]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRL 75
          +FDS++N E+ H K+GYDEGY+HGL   K+E K VGLK GFE GEELGFY       T  
Sbjct: 4  LFDSAVNFEEVHFKKGYDEGYSHGLVAGKDEGKQVGLKIGFEVGEELGFYSGCIHIWTSA 63

Query: 76 FISIRPGC 83
           I I P C
Sbjct: 64 -IQIDPRC 70

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517567|gb|AFK46845.1| unknown [Medicago truncatula]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRL 75
          +FDS++N E+ H K+GYDEGY+HGL   K+E K VGLK GFE GEELGFY       T  
Sbjct: 5  LFDSAVNFEEVHFKKGYDEGYSHGLVAGKDEGKQVGLKIGFEVGEELGFYSGCIHIWTSA 64

Query: 76 FISIRPGC 83
           I I P C
Sbjct: 65 -IQIDPRC 71

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2051415	431	AT2G20830 [Arabidopsis thalian	0.583	0.129	0.5	8.6e-11
MGI|MGI:1919534	137	Oraov1 "oral cancer overexpres	0.583	0.408	0.339	5e-05
UNIPROTKB|Q8WV07	137	ORAOV1 "Oral cancer-overexpres	0.583	0.408	0.321	0.00057
UNIPROTKB|G4N1N8	169	MGG_07505 "Uncharacterized pro	0.489	0.278	0.361	0.00068

TAIR|locus:2051415 AT2G20830 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 8.6e-11, P = 8.6e-11
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query:    14 EVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVS 69
             E   D  + LE+TH+++G+DEGY  GL + +E+A+ +GLK GFETGE +GFY+  S
Sbjct:     7 EDFLDCIVRLEETHVQQGFDEGYEEGLVSGREDARHLGLKLGFETGELIGFYRGCS 62

GO:0005542 "folic acid binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:1919534 Oraov1 "oral cancer overexpressed 1" [Mus musculus (taxid:10090)]

 Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%)

Query:    16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS 71
             IFD+ +  ++    EGY EGY  G +    E K  G+ HG + G E+G Y+  +++
Sbjct:     7 IFDAVVMADERFHGEGYQEGYEEGSSLGIVEGKRYGMVHGAKIGSEIGCYRGFALA 62

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8WV07 ORAOV1 "Oral cancer-overexpressed protein 1" [Homo sapiens (taxid:9606)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query:    16 IFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS 71
             IFD+ +  ++    EGY EGY  G +    E +  G  HG + G E+G Y+  + +
Sbjct:     7 IFDAIVMADERFHGEGYREGYEEGSSLGVMEGRQHGTLHGAKIGSEIGCYQGFAFA 62

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4N1N8 MGG_07505 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 87 (35.7 bits), Expect = 0.00068, P = 0.00068
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query:    17 FDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELG 63
             F+  +NLE+   +EGY +G   G    K E + +GL+ G+E   E G
Sbjct:     5 FEDVMNLEEQFYREGYQQGVADGAKAGKMEGRGLGLEKGYEKFMESG 51


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.132   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 23  0.45    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  551 (59 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.28u 0.10s 11.38t   Elapsed:  00:00:01
  Total cpu time:  11.28u 0.10s 11.38t   Elapsed:  00:00:01
  Start:  Fri May 10 22:32:19 2013   End:  Fri May 10 22:32:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam09811	39	pfam09811, Yae1_N, Essential protein Yae1, N termi	1e-06

>gnl|CDD|204317 pfam09811, Yae1_N, Essential protein Yae1, N terminal

 Score = 41.3 bits (98), Expect = 1e-06
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 31 GYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAV 68
          GY EG   G     +E  D G + G + G ELG    +
Sbjct: 1  GYREGIAEGKEEGLQEGFDEGYQEGAQLGLELGQLLGL 38

Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family. Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG4595	139	consensus Uncharacterized conserved protein [Funct	99.92
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	99.37
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.28
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.2
PRK05687	246	fliH flagellar assembly protein H; Validated	98.15
KOG4774	190	consensus Uncharacterized conserved protein [Funct	98.12
PF09811	39	Yae1_N: Essential protein Yae1, N terminal; InterP	98.02
PRK05687	246	fliH flagellar assembly protein H; Validated	98.0
KOG4595	139	consensus Uncharacterized conserved protein [Funct	97.15
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	96.99
KOG4774	190	consensus Uncharacterized conserved protein [Funct	95.39
PRK09956	308	hypothetical protein; Provisional	95.14
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	94.24
PRK06669	281	fliH flagellar assembly protein H; Validated	92.31
PRK06937	204	type III secretion system protein; Reviewed	88.53
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	87.96
COG5464	289	Uncharacterized conserved protein [Function unknow	87.49
PRK09956	308	hypothetical protein; Provisional	80.01

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.92  E-value=1.2e-24  Score=156.14  Aligned_cols=76  Identities=34%  Similarity=0.534  Sum_probs=68.8

Q ss_pred             CCCCchhhhHhhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 034369            9 NSNSIEVIFDSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFISIRPGCRP   85 (96)
Q Consensus         9 ~~~d~dD~FD~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l~~~~p~~~~   85 (96)
                      ++-+++|+||+|++|||++|++||+||+++|.++|+.|||++|+++||++|.+||+|+||+.+|.++++ .+|..++
T Consensus         2 ~sg~~~d~fD~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~lh-s~~~~ks   77 (139)
T KOG4595|consen    2 PSGDINDDFDDIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQLLH-SPKTRKS   77 (139)
T ss_pred             CcchhHhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-CCchhcC
Confidence            456799999999999999999999999999999999999999999999999999999999999999653 4444444

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=99.37  E-value=8.2e-13  Score=76.43  Aligned_cols=39  Identities=41%  Similarity=0.753  Sum_probs=37.8

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369           31 GYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVS   69 (96)
Q Consensus        31 GY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~   69 (96)
                      ||+||+.+|+++|++||++.|+++||+++.++|+|+|++
T Consensus         1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~   39 (39)
T PF09811_consen    1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA   39 (39)
T ss_pred             ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            799999999999999999999999999999999999975

The exact function has not been determined.

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.28  E-value=3.5e-06  Score=64.35  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=13.5

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369           39 GLATRKEEAKDVGLKHGFETGEELGFYKAVSMSG   72 (96)
Q Consensus        39 G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W   72 (96)
                      |.+.|+.+|++-|++.|++.|.+-|+-.|...++
T Consensus        59 G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~~~~   92 (236)
T PRK13386         59 GLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIR   92 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.20  E-value=6.6e-06  Score=62.86  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369           29 KEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSM   70 (96)
Q Consensus        29 ~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~   70 (96)
                      ++||++|+.+|..+|+.+|++-|++.|++-|.+-|+-.|...
T Consensus        45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~   86 (236)
T PRK13386         45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIE   86 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444445555555555555555555555555544

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.15  E-value=1.1e-05  Score=61.09  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369           26 THLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKA   67 (96)
Q Consensus        26 ~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G   67 (96)
                      ..+++||++|+.+|.++|+.+|++-|++.|++.|.+-|.-.|
T Consensus        63 ~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~  104 (246)
T PRK05687         63 AIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG  104 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555554443

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=6.8e-06  Score=61.82  Aligned_cols=59  Identities=27%  Similarity=0.354  Sum_probs=53.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 034369           19 SSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLFI   77 (96)
Q Consensus        19 ~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l~   77 (96)
                      ++..++|...++||.+|+-.|+++-.+||+..||.+|.++|...|..+|.+..-++.+.
T Consensus        33 elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~   91 (190)
T KOG4774|consen   33 ELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFH   91 (190)
T ss_pred             HHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45678899999999999999999999999999999999999999999998877766554

>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1

Probab=98.02  E-value=2e-05  Score=45.33  Aligned_cols=37  Identities=35%  Similarity=0.628  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034369           28 LKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGF   64 (96)
Q Consensus        28 ~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGf   64 (96)
                      |++|+++|.++|...|+.+|++-|++.|++++...|+
T Consensus         2 Y~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~   38 (39)
T PF09811_consen    2 YREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGF   38 (39)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            6788888888888888888888888888888887764

The exact function has not been determined.

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.00  E-value=6.4e-05  Score=56.85  Aligned_cols=46  Identities=28%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH
Q 034369           18 DSSLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELG   63 (96)
Q Consensus        18 D~il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElG   63 (96)
                      +.+-..-+.-|++||++|+++|..+||.+|++-|++.|++-|.+-|
T Consensus        59 ~~~e~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~  104 (246)
T PRK05687         59 EELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEG  104 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777777777777777777777665544

>KOG4595 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.0012  Score=47.87  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034369           30 EGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS   71 (96)
Q Consensus        30 eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~   71 (96)
                      .=|++||.+|.+.|...|++-|++-|.+.|-++|-..|++.-
T Consensus        19 ~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G   60 (139)
T KOG4595|consen   19 KEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG   60 (139)
T ss_pred             HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345556655555555555555555555555555555555555

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.99  E-value=0.0065  Score=46.61  Aligned_cols=48  Identities=29%  Similarity=0.412  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034369           26 THLKEGYDEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMSGTRLF   76 (96)
Q Consensus        26 ~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~W~~~l   76 (96)
                      .-..+++++++.+|...||.+|++.|++.||+.|.+.|.   +..-|..++
T Consensus        54 ~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~---~~e~~~~li  101 (234)
T COG1317          54 ESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR---VLERLAKLI  101 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            345567888888888888999999999999999988887   556665543

>KOG4774 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.39  E-value=0.077  Score=40.22  Aligned_cols=43  Identities=30%  Similarity=0.525  Sum_probs=38.9

Q ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Q 034369           33 DEGYTHGLATRKEEAKDVGLKHGFETGEELGFYKAVSMS-GTRL   75 (96)
Q Consensus        33 ~EG~~~G~~~G~~EG~~~G~~kGfe~g~ElGfy~G~~~~-W~~~   75 (96)
                      .+||++|..+|..+=.|-|+-.||..|.++||-.|++.- ..++
T Consensus        43 k~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsal   86 (190)
T KOG4774|consen   43 KEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSAL   86 (190)
T ss_pred             hcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999999987 4443

>PRK09956 hypothetical protein; Provisional

Probab=95.14  E-value=0.062  Score=42.56  Aligned_cols=33  Identities=15%  Similarity=0.214  Sum_probs=21.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Q 034369           20 SLNLEQTHLKEGYDEGYTHGLATRKEEAKDVGL   52 (96)
Q Consensus        20 il~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~   52 (96)
                      +....|+..++|.++|..+|++.|.+||++-+.
T Consensus       243 iMTiAe~l~qeG~e~G~q~G~~eG~qeG~~e~~  275 (308)
T PRK09956        243 LMTIAERLRQEGHQIGWQEGKLEGLQEGMHEQA  275 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445678888888888777777666555544433

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.24  E-value=0.5  Score=36.26  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=21.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Q 034369           21 LNLEQTHLKEGYDEGYTHGLATRKEEAKDVGLKHGFETG   59 (96)
Q Consensus        21 l~lEe~~~~eGY~EG~~~G~~~G~~EG~~~G~~kGfe~g   59 (96)
                      +....+-.+++|++|..+|.+.|+.+|+.-|++.|.+.+
T Consensus        53 ~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~   91 (234)
T COG1317          53 LESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG   91 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555443

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=92.31  E-value=0.21  Score=38.50  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHhHHhHHHHHH
Q 034369           27 HLKEGYDEGYTHGLATRKEEAK   48 (96)
Q Consensus        27 ~~~eGY~EG~~~G~~~G~~EG~   48 (96)
                      .+++||++||.+|..+|+.+|.
T Consensus       115 ~~~~a~~eGy~eG~~~g~~e~~  136 (281)
T PRK06669        115 LIEEAKAEGYEEGYEKGREEGL  136 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555554444

>PRK06937 type III secretion system protein; Reviewed

Probab=88.53  E-value=2.1  Score=31.64  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHhHHhHHHHHHHHH
Q 034369           26 THLKEGYDEGYTHGLATRKEEAKDVG   51 (96)
Q Consensus        26 ~~~~eGY~EG~~~G~~~G~~EG~~~G   51 (96)
                      +-|++++++||++|..+|..|..+.-
T Consensus        52 ~~~e~~~~~Gy~~G~~~a~~e~~e~l   77 (204)
T PRK06937         52 EVYEQQKQLGYQAGLDEARTEQAELI   77 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555444333

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=87.96  E-value=0.84  Score=34.89  Aligned_cols=20  Identities=35%  Similarity=0.662  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHhHHhHHHHH
Q 034369           28 LKEGYDEGYTHGLATRKEEA   47 (96)
Q Consensus        28 ~~eGY~EG~~~G~~~G~~EG   47 (96)
                      ++++.++||.+|..+|+.||
T Consensus        86 ~e~A~~eGy~eG~~~G~~e~  105 (255)
T TIGR03825        86 IQEAKQEGYEAGFQAGESEA  105 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>COG5464 Uncharacterized conserved protein [Function unknown]

Probab=87.49  E-value=1.3  Score=35.55  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHHHHHHhHHhHHHHHH--HHHHHHH
Q 034369           23 LEQTHLKEGYDEGYTHGLATRKEEAK--DVGLKHG   55 (96)
Q Consensus        23 lEe~~~~eGY~EG~~~G~~~G~~EG~--~~G~~kG   55 (96)
                      =|..||++.-++|-.+|...|.+||+  +-|.++|
T Consensus       212 r~t~~yqEi~eeg~~~Ge~~g~~egr~~~eG~~eg  246 (289)
T COG5464         212 RETRFYQEIAEEGPQHGEALMTIAGRLEQEGKQEG  246 (289)
T ss_pred             chhHHHHHHHHHhhhhhhHHhhHhhHHHHHHHHhh
Confidence            46789999999998899998888888  8888777

>PRK09956 hypothetical protein; Provisional

Probab=80.01  E-value=5.9  Score=31.39  Aligned_cols=19  Identities=26%  Similarity=0.199  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHhHHhHHHHH
Q 034369           29 KEGYDEGYTHGLATRKEEA   47 (96)
Q Consensus        29 ~eGY~EG~~~G~~~G~~EG   47 (96)
                      +.=.++|...|.+.|..||
T Consensus       248 e~l~qeG~e~G~q~G~~eG  266 (308)
T PRK09956        248 ERLRQEGHQIGWQEGKLEG  266 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00