Citrus Sinensis ID: 034388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MARSLFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccHEHcccccccccccEcccccccccccccccccccccccccccEccccccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MARSLFKAKLLlapvadgislsigrgyaaaaplgtisrtgimekndltpavredsgassawapdpitgyyrpenraveidpAELREMLLNHKVRAH
Flexible Loop (DISEMBL)
MARSLFKAKLLLAPVADGISLSIGRGYAAAaplgtisrtgimEKNDLTpavredsgassawapdpitgyyrpenraVEIDPAELREMLLNHKVRAH
Low Complexity Region (SEG)
MARSLFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Disordered region (IsUnstruct)
****LFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGI************************ITGYY**************************
Disordered Region (DISOPRED)
*******AKLLLAPVADGISLSIGRGYA********************************WAPDPITGYYRPENRAVEIDPAELREM*********
Disordered Region (DISEMBL)
MARSLFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGIMEKNDLTP*********SAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Disordered Region (DISPRO)
***SLFKAKLLLAPVADGISLSIGRGYAA******************************AWAPDPITGYYRPENRAVEIDPAELREMLLNH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MARSLFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q39644	97	Late embryogenesis abunda	no	no	1.0	0.989	0.969	8e-47
P46522	105	Late embryogenesis abunda	N/A	no	1.0	0.914	0.523	2e-20
P46521	105	Late embryogenesis abunda	N/A	no	1.0	0.914	0.495	9e-19
P32292	99	Indole-3-acetic acid-indu	N/A	no	0.947	0.919	0.432	5e-09

>sp|Q39644|LEA5_CITSI Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1

 Score =  185 bits (469), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 94/97 (96%), Positives = 94/97 (96%), Gaps = 1/97 (1%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAAAPLGTISRTGIMEKNDLTPAVREDSGASS 59
          MARSLFKAKLLLAPVADGISLSI R GYAAAAPLGTISRTGIMEKNDL PAVREDSGASS
Sbjct: 1  MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASS 60

Query: 60 AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
          AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct: 61 AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97

Citrus sinensis (taxid: 2711)

>sp|P46522|LEA5D_GOSHI Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 9/105 (8%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYAAAAP---LGTISRTGIMEKNDLTPAVREDSG 56
           MARS+   KLL A + DG+ +SI R GY+ A P     +  R G M K +   A++E S 
Sbjct: 1   MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSS 60

Query: 57  A-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
           +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+ 
Sbjct: 61  SETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRSQ 105

Gossypium hirsutum (taxid: 3635)

>sp|P46521|LEA5A_GOSHI Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 9/105 (8%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYAAAAP---LGTISRTGIMEKNDLTPAVREDSG 56
           MARS+   K L A V D + +SI R GY+ A P     +  R G M K +   A++E S 
Sbjct: 1   MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSS 60

Query: 57  A-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
           +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+ 
Sbjct: 61  SETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRSQ 105

Gossypium hirsutum (taxid: 3635)

>sp|P32292|ARG2_VIGRR Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata GN=ARG2 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 6/97 (6%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAAAP-LGTISRTGIMEKNDLTPAVRED---S 55
          MARS    K+L A VADG S +  R G+AAAA    + +R G     ++ P   E+    
Sbjct: 1  MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRG 60

Query: 56 GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 92
          G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct: 61 GEKVSWVPDPVTGYYRPENTN-EIDVADMRATVLGKK 96


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,152,221
Number of Sequences: 539616
Number of extensions: 1300437
Number of successful extensions: 3815
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3806
Number of HSP's gapped (non-prelim): 11
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
22653808	97	RecName: Full=Late embryogenesis abundan	1.0	0.989	0.969	4e-45
90404816	97	group 5 late embryogenesis abundant prot	1.0	0.989	0.948	3e-44
255551793	97	Late embryogenesis abundant protein Lea5	0.958	0.948	0.564	1e-19
1170748	105	RecName: Full=Late embryogenesis abundan	1.0	0.914	0.523	1e-18
224110412	107	predicted protein [Populus trichocarpa]	0.947	0.850	0.546	3e-18
118483921	107	unknown [Populus trichocarpa]	0.947	0.850	0.546	4e-18
363497938	96	late embryogenesis abundant protein 3L-1	0.947	0.947	0.534	1e-17
18503	100	late embryogenesis abundant protein [Gos	0.989	0.95	0.504	3e-17
1170747	105	RecName: Full=Late embryogenesis abundan	1.0	0.914	0.495	4e-17
2981167	97	late embryogenis abundant protein 5 [Nic	0.968	0.958	0.48	8e-16

>gi|22653808|sp|Q39644.1|LEA5_CITSI RecName: Full=Late embryogenesis abundant protein Lea5 gi|599726|emb|CAA86851.1| Lea5 protein [Citrus sinensis]

 Score =  185 bits (469), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/97 (96%), Positives = 94/97 (96%), Gaps = 1/97 (1%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAAAPLGTISRTGIMEKNDLTPAVREDSGASS 59
          MARSLFKAKLLLAPVADGISLSI R GYAAAAPLGTISRTGIMEKNDL PAVREDSGASS
Sbjct: 1  MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASS 60

Query: 60 AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
          AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct: 61 AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90404816|gb|ABD93882.1| group 5 late embryogenesis abundant protein [Citrus unshiu] gi|90404835|gb|ABD93883.1| group 5 late embryogenesis abundant protein [Citrus unshiu]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 93/97 (95%), Gaps = 1/97 (1%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAAAPLGTISRTGIMEKNDLTPAVREDSGASS 59
          MAR LFKAKLLLAPVADGISLSI R GYAAAAPLGTISRTGIMEKNDL PAVREDSGASS
Sbjct: 1  MARCLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASS 60

Query: 60 AWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
          AWAPDPITGYYRPENRAVEIDPAELRE+LLNHKVRAH
Sbjct: 61 AWAPDPITGYYRPENRAVEIDPAELREILLNHKVRAH 97

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551793|ref|XP_002516942.1| Late embryogenesis abundant protein Lea5, putative [Ricinus communis] gi|223544030|gb|EEF45556.1| Late embryogenesis abundant protein Lea5, putative [Ricinus communis]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/101 (56%), Positives = 69/101 (68%), Gaps = 9/101 (8%)

Query: 1  MARSLFKAKLLLAPVADGISLSIG-RGYAAAAPLGTISR----TGIMEKNDLTPAVREDS 55
          MARS    KLL+    D +SL I  RGY+A A     +R    +G++ K +   A++EDS
Sbjct: 1  MARSHSYVKLLV----DTLSLPIFLRGYSATAHEAASARGGFRSGLVGKVEQRAAIKEDS 56

Query: 56 GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
          GA SAWAPDP+TGYYRP NRA EIDPAELRE LLNH+VR H
Sbjct: 57 GACSAWAPDPVTGYYRPANRAAEIDPAELRETLLNHRVRPH 97

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170748|sp|P46522.1|LEA5D_GOSHI RecName: Full=Late embryogenesis abundant protein Lea5-D gi|167349|gb|AAA18544.1| late embryogenesis-abundant protein [Gossypium hirsutum] gi|167351|gb|AAA18526.1| late embryogenesis-abundant protein [Gossypium hirsutum]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 9/105 (8%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYAAAAP---LGTISRTGIMEKNDLTPAVREDSG 56
           MARS+   KLL A + DG+ +SI R GY+ A P     +  R G M K +   A++E S 
Sbjct: 1   MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSS 60

Query: 57  A-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
           +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+ 
Sbjct: 61  SETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRSQ 105

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110412|ref|XP_002315512.1| predicted protein [Populus trichocarpa] gi|222864552|gb|EEF01683.1| predicted protein [Populus trichocarpa]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 70/108 (64%), Gaps = 17/108 (15%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYA--------AAAPLG-----TISRTGIMEKND 46
           MARSL  AKLL+A +ADG+SLS+ R GYA          A  G     T + TG ME   
Sbjct: 1   MARSLPNAKLLVASLADGLSLSVFRRGYAAAAPISAAVTASFGRGGSRTSAMTGKMEDGA 60

Query: 47  LTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVR 94
           +    +EDS A SAWAPDP+TGYYRP N   EIDPAELREM+L+H+VR
Sbjct: 61  V---AKEDSEAYSAWAPDPVTGYYRPANYVAEIDPAELREMVLSHRVR 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483921|gb|ABK93850.1| unknown [Populus trichocarpa]

 Score = 95.1 bits (235), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 70/108 (64%), Gaps = 17/108 (15%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYA--------AAAPLG-----TISRTGIMEKND 46
           MARSL  AKLL+A +ADG+SLS+ R GYA          A  G     T + TG ME   
Sbjct: 1   MARSLPNAKLLVASLADGLSLSVFRRGYAAAAPISAAVTASFGRGGSRTSAMTGKMEDGA 60

Query: 47  LTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVR 94
           +    +EDS A SAWAPDP+TGYYRP N   EIDPAELREM+L+H+VR
Sbjct: 61  V---AKEDSEAYSAWAPDPVTGYYRPANYEAEIDPAELREMVLSHRVR 105

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363497938|gb|AEW24432.1| late embryogenesis abundant protein 3L-1 [Camellia sinensis]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/101 (53%), Positives = 65/101 (64%), Gaps = 10/101 (9%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAA----APLGTISRTGIMEKNDLTPAVREDS 55
          MARS   AKLL A V D ISL++ R GYAAA    A     +R G+M K D      E+ 
Sbjct: 1  MARSFSNAKLLSAFVVDRISLAVTRRGYAAASQGVASGPVTARGGVMGKKD-----GEEE 55

Query: 56 GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
             ++W PDP+TGYYRPEN+A EID AELREMLL +K+R H
Sbjct: 56 ATKTSWVPDPVTGYYRPENKANEIDVAELREMLLKNKIRRH 96

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18503|emb|CAA38314.1| late embryogenesis abundant protein [Gossypium hirsutum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 64/101 (63%), Gaps = 6/101 (5%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGA--- 57
           MARS+   K L A V D + +SI R   AAA   +  R G M K +   A++E S +   
Sbjct: 1   MARSVSSFKFLGASVFDALYVSISRC-TAAAVTASFGRPGAMGKVERRYAMKESSSSETR 59

Query: 58  --SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
             SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+ 
Sbjct: 60  AYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRSQ 100

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170747|sp|P46521.1|LEA5A_GOSHI RecName: Full=Late embryogenesis abundant protein Lea5-A gi|167345|gb|AAA18545.1| late embryogenesis-abundant protein [Gossypium hirsutum] gi|167347|gb|AAA18538.1| Lea5-A late embryogenesis-abundant protein [Gossypium hirsutum]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 9/105 (8%)

Query: 1   MARSLFKAKLLLAPVADGISLSIGR-GYAAAAP---LGTISRTGIMEKNDLTPAVREDSG 56
           MARS+   K L A V D + +SI R GY+ A P     +  R G M K +   A++E S 
Sbjct: 1   MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSS 60

Query: 57  A-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
           +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+ 
Sbjct: 61  SETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRSQ 105

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2981167|gb|AAC06242.1| late embryogenis abundant protein 5 [Nicotiana tabacum]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 7/100 (7%)

Query: 1  MARSLFKAKLLLAPVADGISLSIGR-GYAAAAPL---GTISRTGIMEKNDLTPAVREDSG 56
          MARS   +KL+ A V D +S  + R GYAAA+     G +  +G+   N +     E S 
Sbjct: 1  MARSFSNSKLISAFVVDTVSSFVSRRGYAAASSASVPGGVRGSGV---NIMMKKWEESSK 57

Query: 57 ASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
           +++W PDP+TGYYRPE+ A EID AELR+MLLNHK R H
Sbjct: 58 KTTSWVPDPVTGYYRPESHAKEIDAAELRQMLLNHKPRQH 97

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2129795	104	DI21 "AT4G15910" [Arabidopsis	0.958	0.884	0.436	2.7e-13
TAIR|locus:2133279	97	SAG21 "AT4G02380" [Arabidopsis	0.958	0.948	0.447	4.4e-13
TAIR|locus:2024735	91	LEA3 "AT1G02820" [Arabidopsis	0.927	0.978	0.430	3.9e-12
TAIR|locus:2084450	124	AT3G53770 "AT3G53770" [Arabido	0.375	0.290	0.5	1.1e-05
TIGR_CMR|CPS_2809	492	CPS_2809 "Na+/H+ antiporter Nh	0.677	0.132	0.348	0.00075

TAIR|locus:2129795 DI21 "AT4G15910" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 45/103 (43%), Positives = 57/103 (55%)

Query:     2 ARSLFKAKLLLAPVADG-ISLSI--GRGYAAAAPLGTISRTGIMEKNDLTPAVRE----- 53
             ARSL  A   L   A G +S SI   R Y A +    ++  G+ +       V +     
Sbjct:     3 ARSLSGAVKSLCSAASGSLSCSIVLRRSYVATSQ--NVTAAGLSKGGSTRVMVGKMEQRG 60

Query:    54 -DSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 95
              D  A SAW PDP+TGYYRP NRA EIDPAELRE+LL +K ++
Sbjct:    61 LDQEAESAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNKAKS 103

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IGI

TAIR|locus:2133279 SAG21 "AT4G02380" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 43/96 (44%), Positives = 58/96 (60%)

Query:     1 MARSLFKAKLLLAPVADGISLSI-GRGYAAAAPLGTIS---RTGIMEKNDLTPAVREDSG 56
             MARS+   K++ A V+  +S +I  RGYAA A  G++S   R+G +    +     E+S 
Sbjct:     1 MARSISNVKIVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVEEST 60

Query:    57 ASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 92
                +W PDP TGYYRPE  + EID AELR  LLN+K
Sbjct:    61 QKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=ISS

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=RCA;IMP

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2024735 LEA3 "AT1G02820" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 40/93 (43%), Positives = 54/93 (58%)

Query:     1 MARSLFKAKLLLAPVADGISLSI-GRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASS 59
             MARSL  AK+     ++ +S ++  RG+AAAA        G +   ++     E S   +
Sbjct:     1 MARSLANAKIQSVFGSEKLSNAVFRRGFAAAAKTAL---DGSVSTAEMKKRAGEASSEKA 57

Query:    60 AWAPDPITGYYRPENRAVEIDPAELREMLLNHK 92
              W PDP TGYYRPE  + EIDPAELR +LLN+K
Sbjct:    58 PWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=ISS

TAIR|locus:2084450 AT3G53770 "AT3G53770" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 18/36 (50%), Positives = 23/36 (63%)

Query:    61 WAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 96
             W PDP TGYYRP+N A E+D  ELR +  N   + +
Sbjct:    86 WMPDPQTGYYRPDNFARELDAVELRSLHFNKNQKTY 121

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CPS_2809 CPS_2809 "Na+/H+ antiporter NhaC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 81 (33.6 bits), Expect = 0.00075, Sum P(2) = 0.00075
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query:    19 ISLSIGRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVE 78
             +S+SIG  +  AA +G ++  GI +  DL+PAV   +  S A+  D I+      N A  
Sbjct:   128 VSMSIGSSWTTAATIG-VALIGIAQGLDLSPAVTAGAVISGAYFGDKISPLSETTNLAPA 186

Query:    79 IDPAEL 84
             I  +EL
Sbjct:   187 IAGSEL 192

GO:0006814 "sodium ion transport" evidence=ISS

GO:0006818 "hydrogen transport" evidence=ISS

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39644	LEA5_CITSI	No assigned EC number	0.9690	1.0	0.9896	no	no
P46522	LEA5D_GOSHI	No assigned EC number	0.5238	1.0	0.9142	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam03242	94	pfam03242, LEA_3, Late embryogenesis abundant prot	4e-34

>gnl|CDD|217449 pfam03242, LEA_3, Late embryogenesis abundant protein

 Score =  112 bits (281), Expect = 4e-34
 Identities = 54/94 (57%), Positives = 63/94 (67%), Gaps = 4/94 (4%)

Query: 1  MARSLFKAKLLLAPVADGISLSIG-RGYAAAAPLGTIS--RTGIMEKNDLTPAVREDS-G 56
          MARSL  AKLL A VADG+S ++  RGYAAAA        R G   + ++ P   E S  
Sbjct: 1  MARSLSNAKLLSALVADGVSAAVHRRGYAAAAAAMRSGATRGGAAREAEMRPKAGEGSGA 60

Query: 57 ASSAWAPDPITGYYRPENRAVEIDPAELREMLLN 90
          A+S+W PDP+TGYYRPEN A EIDPAELR MLLN
Sbjct: 61 ATSSWVPDPVTGYYRPENHANEIDPAELRAMLLN 94

Members of this family are similar to late embryogenesis abundant proteins. Members of the family have been isolated in a number of different screens. However, the molecular function of these proteins remains obscure. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
PF03242	93	LEA_3: Late embryogenesis abundant protein; InterP	100.0
PF02736	42	Myosin_N: Myosin N-terminal SH3-like domain; Inter	82.75

>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []

Probab=100.00  E-value=2.2e-41  Score=232.00  Aligned_cols=90  Identities=53%  Similarity=0.737  Sum_probs=72.4

Q ss_pred             CchhhhhHHHHHHHHhhhhhhhhh-hhhhhhcCCCcc--cccccccccCCCcccccccCCccccccCCCCcccccCCCCC
Q 034388            1 MARSLFKAKLLLAPVADGISLSIG-RGYAAAAPLGTI--SRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAV   77 (96)
Q Consensus         1 MARSlsnak~lsalv~d~iS~~i~-RgYAAAa~~~~~--~~~~~~~~~~~~~~~~e~~~~~~~W~~DP~TG~~~Pe~~~~   77 (96)
                      |||||+|+|+||++++|.|++.++ |||+++++....  .+.+.+....+..+.++..++++|||||||||||||||||+
T Consensus         1 MArsls~ak~lsal~~~~~s~~~~rRgYaaaA~~~~~sa~r~g~~~~~~~~~~~~~~~~~~~~W~pDPvTGyyrPen~~~   80 (93)
T PF03242_consen    1 MARSLSNAKVLSALVSDAFSSLISRRGYAAAAAAVRSSAARGGAAGKAKMASKAGEDSKEKSSWMPDPVTGYYRPENHFG   80 (93)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccccccchhhhhcccccccccccccCCCCccccCCCCCC
Confidence            999999999999999999999988 999998885111  12222222223333445567899999999999999999999


Q ss_pred             CCCHHHHHHHHhc
Q 034388           78 EIDPAELREMLLN   90 (96)
Q Consensus        78 e~D~aelR~~lL~   90 (96)
                      |||+||||++||+
T Consensus        81 EiD~AeLR~~lL~   93 (93)
T PF03242_consen   81 EIDAAELRAKLLK   93 (93)
T ss_pred             CCCHHHHHHHHhC
Confidence            9999999999996

This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress

>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold

Probab=82.75  E-value=0.43  Score=27.88  Aligned_cols=13  Identities=38%  Similarity=1.012  Sum_probs=10.7

Q ss_pred             ccccccCCCCccc
Q 034388           58 SSAWAPDPITGYY   70 (96)
Q Consensus        58 ~~~W~~DP~TG~~   70 (96)
                      +..|+|||..||=
T Consensus         2 ~~vWvpD~~egfv   14 (42)
T PF02736_consen    2 KWVWVPDPKEGFV   14 (42)
T ss_dssp             TEEEEEESSSSEE
T ss_pred             CEEEEeCCcccEE
Confidence            4569999999984

It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00