Citrus Sinensis ID: 034393

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90------
Protein Sequence
MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccEEEccEccccccccHHHHHHcccEEccccEEEEccccccccc
Coil and Loop (DISEMBL)
mvcekcekklskvivpdkwkegasntteaggrkvnenkllskkkrwtpygntkciickqqvhqdakychtcayskgvcamcgkqvldtkfykqsnv
Flexible Loop (DISEMBL)
mvcekcekklskvivpdkwkegasntteaggrkvnenkllskkkrwtpygnTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVldtkfykqsnv
Low Complexity Region (SEG)
MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Disordered region (IsUnstruct)
******************************************KKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFY*****
Disordered Region (DISOPRED)
MVCEKCEKKLSKVIVPD*******************************YGN*KCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQ***
Disordered Region (DISEMBL)
MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Disordered Region (DISPRO)
*VCEKCEKKLSKVIVPDKWK************KVNENKLLSKKKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFY*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	96	2.2.26 [Sep-21-2011]
Q792Q4	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.673	2e-30
O70333	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.673	2e-30
Q567Z6	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.653	2e-30
Q9P021	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.673	4e-30
Q3ZC66	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.673	4e-30
Q1WCC0	101	Cysteine-rich PDZ-binding	N/A	no	1.0	0.950	0.653	5e-30
Q5ZKB6	101	Cysteine-rich PDZ-binding	yes	no	1.0	0.950	0.653	2e-29
Q6NU28	101	Cysteine-rich PDZ-binding	N/A	no	1.0	0.950	0.643	1e-28

>sp|Q792Q4|CRIPT_RAT Cysteine-rich PDZ-binding protein OS=Rattus norvegicus GN=Cript PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 78/101 (77%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.
Rattus norvegicus (taxid: 10116)

>sp|O70333|CRIPT_MOUSE Cysteine-rich PDZ-binding protein OS=Mus musculus GN=Cript PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 78/101 (77%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Mus musculus (taxid: 10090)

>sp|Q567Z6|CRIPT_DANRE Cysteine-rich PDZ-binding protein OS=Danio rerio GN=cript PE=3 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 79/101 (78%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNT---KCII 56
           MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK+L SKK R+ PYG +    C I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+V+DTK YKQ++V
Sbjct: 61  CKSSVHQSGSHYCQGCAYKKGICAMCGKKVIDTKNYKQTSV 101

Danio rerio (taxid: 7955)

>sp|Q9P021|CRIPT_HUMAN Cysteine-rich PDZ-binding protein OS=Homo sapiens GN=CRIPT PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 77/101 (76%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVCEKCEKKL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct: 1   MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Homo sapiens (taxid: 9606)

>sp|Q3ZC66|CRIPT_BOVIN Cysteine-rich PDZ-binding protein OS=Bos taurus GN=CRIPT PE=1 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 77/101 (76%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVCEKCEKKL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct: 1   MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

Involved in the cytoskeletal anchoring of DLG4 in excitatory synapses.

Bos taurus (taxid: 9913)

>sp|Q1WCC0|CRIPT_ICTPU Cysteine-rich PDZ-binding protein OS=Ictalurus punctatus GN=cript PE=3 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGN---TKCII 56
           MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK+L SKK  + PYG    + C I
Sbjct: 1   MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKINENKMLTSKKAGFDPYGKSGFSTCRI 60

Query: 57  CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ    YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQSGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

Ictalurus punctatus (taxid: 7998)

>sp|Q5ZKB6|CRIPT_CHICK Cysteine-rich PDZ-binding protein OS=Gallus gallus GN=CRIPT PE=3 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 77/101 (76%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVCEKCE+KL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct: 1   MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60

Query: 57  CKQQVHQD-AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+C+MCGK+VLDTK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICSMCGKKVLDTKNYKQTSV 101

Gallus gallus (taxid: 9031)

>sp|Q6NU28|CRIPT_XENLA Cysteine-rich PDZ-binding protein OS=Xenopus laevis GN=cript PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 75/101 (74%), Gaps = 5/101 (4%)

Query: 1   MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENK-LLSKKKRWTPYGNTK---CII 56
           MVC+KCEKKL  VI PD WK GA NTTE+GGRK+NENK L SK  R+ PYG  K   C I
Sbjct: 1   MVCDKCEKKLGTVITPDTWKSGARNTTESGGRKLNENKALTSKTARFNPYGKNKFAICRI 60

Query: 57  CKQQVHQ-DAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
           CK  VHQ  + YC  CAY KG+CAMCGK+VL+TK YKQ++V
Sbjct: 61  CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLETKNYKQTSV 101

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
449433932	96	PREDICTED: cysteine-rich PDZ-binding pro	1.0	1.0	0.958	4e-47
351723141	96	uncharacterized protein LOC100306433 [Gl	1.0	1.0	0.947	1e-46
255554983	96	conserved hypothetical protein [Ricinus	1.0	1.0	0.937	2e-46
224076353	96	predicted protein [Populus trichocarpa]	1.0	1.0	0.927	7e-46
225444381	96	PREDICTED: cysteine-rich PDZ-binding pro	1.0	1.0	0.927	1e-45
226493364	96	cysteine-rich PDZ-binding protein [Zea m	1.0	1.0	0.927	2e-45
40253812	96	putative postsynaptic protein CRIPT [Ory	1.0	1.0	0.916	3e-45
326494116	96	predicted protein [Hordeum vulgare subsp	1.0	1.0	0.916	1e-44
297608091	97	Os08g0190800 [Oryza sativa Japonica Grou	1.0	0.989	0.907	7e-44
357144710	96	PREDICTED: cysteine-rich PDZ-binding pro	1.0	1.0	0.885	1e-43

>gi|449433932|ref|XP_004134750.1| PREDICTED: cysteine-rich PDZ-binding protein-like isoform 2 [Cucumis sativus]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/96 (95%), Positives = 94/96 (97%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVCEKCEKKLSKVIVPDKWKEGASNT E+GGRK+NENKLLSKKKRWTPYGNTKCIICKQQ
Sbjct: 1  MVCEKCEKKLSKVIVPDKWKEGASNTQESGGRKINENKLLSKKKRWTPYGNTKCIICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQD KYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Sbjct: 61 VHQDGKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723141|ref|NP_001234965.1| uncharacterized protein LOC100306433 [Glycine max] gi|356536057|ref|XP_003536557.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Glycine max] gi|255628525|gb|ACU14607.1| unknown [Glycine max]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/96 (94%), Positives = 93/96 (96%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVCEKCEKKLSKVIVPDKWKEGASNTTE GGRK+NENKLLSKK RWTPYGNTKC ICKQQ
Sbjct: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEGGGRKINENKLLSKKNRWTPYGNTKCTICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQ+AKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV
Sbjct: 61 VHQNAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554983|ref|XP_002518529.1| conserved hypothetical protein [Ricinus communis] gi|223542374|gb|EEF43916.1| conserved hypothetical protein [Ricinus communis]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/96 (93%), Positives = 94/96 (97%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVCEKCEKKL+KVIVPDKWKEGASNTTE GGRK+NENKLLSKKKRWTPYGNTKC+ICKQQ
Sbjct: 1  MVCEKCEKKLAKVIVPDKWKEGASNTTEGGGRKINENKLLSKKKRWTPYGNTKCMICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQDAKYCHTCAY+KGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 VHQDAKYCHTCAYTKGVCAMCGKQVLDTKLYKQSNV 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076353|ref|XP_002304930.1| predicted protein [Populus trichocarpa] gi|118483061|gb|ABK93440.1| unknown [Populus trichocarpa] gi|222847894|gb|EEE85441.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (475), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 89/96 (92%), Positives = 92/96 (95%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVCEKCEKKLSKVIVPDKWKEGASNTTE GGRK+NENKLLSKKKRW+PYGNTKC+ICKQQ
Sbjct: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEGGGRKINENKLLSKKKRWSPYGNTKCMICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQD KYCHTCAYSKGVCAMCGKQVLDTK YKQSN 
Sbjct: 61 VHQDGKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNA 96

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444381|ref|XP_002267539.1| PREDICTED: cysteine-rich PDZ-binding protein [Vitis vinifera] gi|302144069|emb|CBI23174.3| unnamed protein product [Vitis vinifera]

 Score =  186 bits (473), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/96 (92%), Positives = 92/96 (95%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVC+KCEKKLSKVIVPDKWKEGASNTTE GGRK+NENKLLSKK RWTPYG TKCIICKQQ
Sbjct: 1  MVCDKCEKKLSKVIVPDKWKEGASNTTEGGGRKINENKLLSKKNRWTPYGTTKCIICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQDAKYCHTCAY+KGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 VHQDAKYCHTCAYTKGVCAMCGKQVLDTKLYKQSNV 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226493364|ref|NP_001150297.1| cysteine-rich PDZ-binding protein [Zea mays] gi|226531748|ref|NP_001149577.1| LOC100283203 [Zea mays] gi|242080809|ref|XP_002445173.1| hypothetical protein SORBIDRAFT_07g005380 [Sorghum bicolor] gi|195617934|gb|ACG30797.1| postsynaptic protein CRIPT [Zea mays] gi|195628180|gb|ACG35920.1| postsynaptic protein CRIPT [Zea mays] gi|195638164|gb|ACG38550.1| postsynaptic protein CRIPT [Zea mays] gi|241941523|gb|EES14668.1| hypothetical protein SORBIDRAFT_07g005380 [Sorghum bicolor] gi|413916987|gb|AFW56919.1| postsynaptic protein CRIPT [Zea mays]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/96 (92%), Positives = 91/96 (94%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVC KCEKKL KVIVPDKWKEGASNT E+GGRK+NENKLLSKK RWTPYGNTKCIICKQQ
Sbjct: 1  MVCAKCEKKLGKVIVPDKWKEGASNTNESGGRKINENKLLSKKNRWTPYGNTKCIICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQDAKYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 96

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40253812|dbj|BAD05749.1| putative postsynaptic protein CRIPT [Oryza sativa Japonica Group] gi|40253852|dbj|BAD05788.1| putative postsynaptic protein CRIPT [Oryza sativa Japonica Group] gi|125560413|gb|EAZ05861.1| hypothetical protein OsI_28095 [Oryza sativa Indica Group] gi|125602444|gb|EAZ41769.1| hypothetical protein OsJ_26307 [Oryza sativa Japonica Group] gi|215768830|dbj|BAH01059.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 91/96 (94%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVC KCEKKL KVIVPDKWKEGASNT E+GGRK+NENKLLSKK RWTPYGNTKC+ICKQQ
Sbjct: 1  MVCAKCEKKLGKVIVPDKWKEGASNTNESGGRKINENKLLSKKNRWTPYGNTKCVICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQDAKYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 96

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326494116|dbj|BAJ85520.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/96 (91%), Positives = 89/96 (92%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVC KCEKKL KVIVPDKWKEGASNT E GGRK+NENKLLSKK RWTPYGNTKCIICKQQ
Sbjct: 1  MVCTKCEKKLGKVIVPDKWKEGASNTFEGGGRKINENKLLSKKSRWTPYGNTKCIICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          VHQD KYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 VHQDGKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 96

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297608091|ref|NP_001061168.2| Os08g0190800 [Oryza sativa Japonica Group] gi|255678207|dbj|BAF23082.2| Os08g0190800 [Oryza sativa Japonica Group]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 88/97 (90%), Positives = 91/97 (93%), Gaps = 1/97 (1%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKK-RWTPYGNTKCIICKQ 59
          MVC KCEKKL KVIVPDKWKEGASNT E+GGRK+NENKLLSKK  RWTPYGNTKC+ICKQ
Sbjct: 1  MVCAKCEKKLGKVIVPDKWKEGASNTNESGGRKINENKLLSKKNSRWTPYGNTKCVICKQ 60

Query: 60 QVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          QVHQDAKYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 QVHQDAKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 97

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144710|ref|XP_003573388.1| PREDICTED: cysteine-rich PDZ-binding protein-like [Brachypodium distachyon]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/96 (88%), Positives = 89/96 (92%)

Query: 1  MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNTKCIICKQQ 60
          MVC KCEKKL KVIVPDKWKEGASNT E GGRK+NENKLLSKK RW+PYGNTKC+ICKQQ
Sbjct: 1  MVCTKCEKKLGKVIVPDKWKEGASNTFEGGGRKINENKLLSKKNRWSPYGNTKCVICKQQ 60

Query: 61 VHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          +HQD KYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct: 61 MHQDGKYCHTCAYSKGVCAMCGKQVLDTKLYKQSNV 96

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	96
TAIR|locus:2195738	98	AT1G61780 "AT1G61780" [Arabido	1.0	0.979	0.846	3.1e-44
MGI|MGI:1929655	101	Cript "cysteine-rich PDZ-bindi	1.0	0.950	0.673	8.5e-33
RGD|621545	101	Cript "cysteine-rich PDZ-bindi	1.0	0.950	0.673	8.5e-33
UNIPROTKB|Q3ZC66	101	CRIPT "Cysteine-rich PDZ-bindi	1.0	0.950	0.673	1.8e-32
UNIPROTKB|Q9P021	101	CRIPT "Cysteine-rich PDZ-bindi	1.0	0.950	0.673	1.8e-32
ZFIN|ZDB-GENE-050417-451	101	cript "cysteine-rich PDZ-bindi	1.0	0.950	0.653	1.8e-32
UNIPROTKB|Q5ZKB6	101	CRIPT "Cysteine-rich PDZ-bindi	1.0	0.950	0.653	7.7e-32
WB|WBGene00044614	99	C36B1.14 [Caenorhabditis elega	0.968	0.939	0.438	4.1e-17
ASPGD|ASPL0000067618	135	AN7283 [Emericella nidulans (t	0.635	0.451	0.439	8.4e-10

TAIR|locus:2195738 AT1G61780 "AT1G61780" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 83/98 (84%), Positives = 88/98 (89%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGN--TKCIICK 58
             MVC+KCEKKLSKVIVPDKWK+GA N TE GGRK+NENKLLSKK RW+PY    TKC+ICK
Sbjct:     1 MVCDKCEKKLSKVIVPDKWKDGARNVTEGGGRKINENKLLSKKNRWSPYSTCTTKCMICK 60

Query:    59 QQVHQDAKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             QQVHQD KYCHTCAYSKGVCAMCGKQVLDTK YKQSNV
Sbjct:    61 QQVHQDGKYCHTCAYSKGVCAMCGKQVLDTKMYKQSNV 98

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1929655 Cript "cysteine-rich PDZ-binding protein" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/101 (67%), Positives = 77/101 (76%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNTK---CII 56
             MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031122 "cytoplasmic microtubule organization" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0045184 "establishment of protein localization" evidence=ISO

GO:0045202 "synapse" evidence=IEA

RGD|621545 Cript "cysteine-rich PDZ-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 68/101 (67%), Positives = 77/101 (76%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNTK---CII 56
             MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0031122 "cytoplasmic microtubule organization" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0045184 "establishment of protein localization" evidence=IDA

UNIPROTKB|Q3ZC66 CRIPT "Cysteine-rich PDZ-binding protein" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNTK---CII 56
             MVCEKCEKKL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

GO:0045202 "synapse" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|Q9P021 CRIPT "Cysteine-rich PDZ-binding protein" [Homo sapiens (taxid:9606)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 68/101 (67%), Positives = 76/101 (75%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNTK---CII 56
             MVCEKCEKKL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct:     1 MVCEKCEKKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFSTCRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+CAMCGK+VLDTK YKQ++V
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQTSV 101

GO:0030054 "cell junction" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0031122 "cytoplasmic microtubule organization" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043198 "dendritic shaft" evidence=IEA

GO:0045184 "establishment of protein localization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-050417-451 cript "cysteine-rich PDZ-binding protein" [Danio rerio (taxid:7955)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/101 (65%), Positives = 78/101 (77%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNT---KCII 56
             MVCEKCEKKL +VI PD WK+GA NTTE+GGRK+NENK+L SKK R+ PYG +    C I
Sbjct:     1 MVCEKCEKKLGRVITPDTWKDGARNTTESGGRKLNENKMLTSKKARFDPYGKSGFATCRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+CAMCGK+V+DTK YKQ++V
Sbjct:    61 CKSSVHQSGSHYCQGCAYKKGICAMCGKKVIDTKNYKQTSV 101

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZKB6 CRIPT "Cysteine-rich PDZ-binding protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 66/101 (65%), Positives = 76/101 (75%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGNTK---CII 56
             MVCEKCE+KL  VI PD WK+GA NTTE+GGRK+NENK L SKK R+ PYG  K   C I
Sbjct:     1 MVCEKCERKLGTVITPDTWKDGARNTTESGGRKLNENKALTSKKARFDPYGKNKFAICRI 60

Query:    57 CKQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
             CK  VHQ    YC  CAY KG+C+MCGK+VLDTK YKQ++V
Sbjct:    61 CKSSVHQPGSHYCQGCAYKKGICSMCGKKVLDTKNYKQTSV 101

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00044614 C36B1.14 [Caenorhabditis elegans (taxid:6239)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 43/98 (43%), Positives = 60/98 (61%)

Query:     1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAG-GRKV--NENKLLSKKKRWTPYGNTKCIIC 57
             MVC  CEKKL+K++  D ++    N    G G K    +N+L+  +K+ T  G  KC +C
Sbjct:     1 MVCGDCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKATIVG-AKCKLC 59

Query:    58 KQQVHQDAK-YCHTCAYSKGVCAMCGKQVLDTKFYKQS 94
             K  +HQ    YC TCAY KG+CAMCGK++ +TK  +QS
Sbjct:    60 KMLIHQPGSHYCSTCAYQKGICAMCGKKIQNTKGLRQS 97

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0032502 "developmental process" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

ASPGD|ASPL0000067618 AN7283 [Emericella nidulans (taxid:162425)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 29/66 (43%), Positives = 39/66 (59%)

Query:    24 SNTTEA--GGRKVNENKLLSKKKRWTPYG--NTKCIICKQQVHQDAKYCHTCAYSKGVCA 79
             +N T+A  G   V++NKLLS K +  PY   ++ C +CK +  Q  KYC  CAY K  C 
Sbjct:    52 ANRTKATLGNTGVSKNKLLSAKAK-NPYAAYSSSCDMCKAKTEQGRKYCQRCAYQKNACP 110

Query:    80 MCGKQV 85
             MCGK +
Sbjct:   111 MCGKSL 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       96        96   0.00091  102 3  11 22  0.39    30
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.91u 0.11s 11.02t   Elapsed:  00:00:00
  Total cpu time:  10.91u 0.11s 11.02t   Elapsed:  00:00:00
  Start:  Fri May 10 23:27:54 2013   End:  Fri May 10 23:27:54 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZKB6	CRIPT_CHICK	No assigned EC number	0.6534	1.0	0.9504	yes	no
Q3ZC66	CRIPT_BOVIN	No assigned EC number	0.6732	1.0	0.9504	yes	no
O70333	CRIPT_MOUSE	No assigned EC number	0.6732	1.0	0.9504	yes	no
Q6NU28	CRIPT_XENLA	No assigned EC number	0.6435	1.0	0.9504	N/A	no
Q1WCC0	CRIPT_ICTPU	No assigned EC number	0.6534	1.0	0.9504	N/A	no
Q792Q4	CRIPT_RAT	No assigned EC number	0.6732	1.0	0.9504	yes	no
Q567Z6	CRIPT_DANRE	No assigned EC number	0.6534	1.0	0.9504	yes	no
Q9P021	CRIPT_HUMAN	No assigned EC number	0.6732	1.0	0.9504	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	96
pfam10235	89	pfam10235, Cript, Microtubule-associated protein C	2e-30

>gnl|CDD|220641 pfam10235, Cript, Microtubule-associated protein CRIPT

 Score =  102 bits (257), Expect = 2e-30
 Identities = 54/89 (60%), Positives = 66/89 (74%), Gaps = 3/89 (3%)

Query: 11 SKVIVPDKWKEGASNTTEAGGRKVNENKLLSKKKRWTPYGNT--KCIICKQQVHQ-DAKY 67
          +K+  PD WK+GA NT   GGRK+N+NKLLSKK +  PY     KC ICK +VHQ  +KY
Sbjct: 1  TKLATPDVWKKGARNTATLGGRKINKNKLLSKKAKRNPYAQYSSKCKICKTKVHQKGSKY 60

Query: 68 CHTCAYSKGVCAMCGKQVLDTKFYKQSNV 96
          C  CAY KG+CAMCGK++LDTK YKQS+V
Sbjct: 61 CQRCAYKKGICAMCGKKILDTKNYKQSSV 89

The CRIPT protein is a cytoskeletal protein involved in microtubule production. The C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners. SAP90 is concentrated in the post synaptic density of glutamatergic neurons. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	96
KOG3476	100	consensus Microtubule-associated protein CRIPT [Cy	100.0
PF10235	90	Cript: Microtubule-associated protein CRIPT; Inter	100.0
PF10217	92	DUF2039: Uncharacterized conserved protein (DUF203	95.82
PF12773	50	DZR: Double zinc ribbon	92.34
KOG3241	227	consensus Uncharacterized conserved protein [Funct	91.12
COG5152	259	Uncharacterized conserved protein, contains RING a	83.09
PRK14559	645	putative protein serine/threonine phosphatase; Pro	80.05

>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]

Probab=100.00  E-value=5.1e-55  Score=302.51  Aligned_cols=96  Identities=74%  Similarity=1.273  Sum_probs=91.8

Q ss_pred             CcchHHHHhhcCcccCCccCCCCCccccCCCceecccccc-ccccCCCCCCC--ccccchhhhcCCC-CCcccccccccC
Q 034393            1 MVCEKCEKKLSKVIVPDKWKEGASNTTEAGGRKVNENKLL-SKKKRWTPYGN--TKCIICKQQVHQD-AKYCHTCAYSKG   76 (96)
Q Consensus         1 MVC~KCeKKl~klatPd~~k~g~~~~~~~g~r~i~eNKlL-s~k~r~~py~~--~~C~~CK~~v~q~-~~YCq~CAYkkg   76 (96)
                      |||++|||||++|++|||||+|+||++++|+|+|+|||.| |+++||+||+.  .+|+|||+.|||+ +||||.|||+||
T Consensus         1 MVC~kCEkKLskvi~pd~wr~garn~~~sGgrkinenkaL~s~k~r~~p~gt~~~kC~iCk~~vHQ~GshYC~tCAY~Kg   80 (100)
T KOG3476|consen    1 MVCEKCEKKLSKVIGPDPWRDGARNTTESGGRKINENKALISKKKRATPYGTALAKCRICKQLVHQPGSHYCQTCAYKKG   80 (100)
T ss_pred             CchhHHHHHhccccccCcccccccccCCCCCeecchhhhhhhhhhhcCccccccchhHHHHHHhcCCcchhHhHhhhhhh
Confidence            9999999999999999999999999999999999999955 45999999994  5999999999999 799999999999


Q ss_pred             ccccCCccccccccccccCC
Q 034393           77 VCAMCGKQVLDTKFYKQSNV   96 (96)
Q Consensus        77 iCamCGKki~dt~~y~qS~~   96 (96)
                      |||||||+|+||++|+||++
T Consensus        81 iCAMCGKki~nTK~ykQsst  100 (100)
T KOG3476|consen   81 ICAMCGKKILNTKNYKQSST  100 (100)
T ss_pred             HHHHhhhHhhccccccccCC
Confidence            99999999999999999986

>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production

Probab=100.00  E-value=1.4e-47  Score=262.36  Aligned_cols=85  Identities=67%  Similarity=1.227  Sum_probs=79.9

Q ss_pred             cCcccCCccCCCC--CccccCCCceecccccccc--ccCCCCCCCccccchhhhcCC-CCCcccccccccCccccCCccc
Q 034393           11 SKVIVPDKWKEGA--SNTTEAGGRKVNENKLLSK--KKRWTPYGNTKCIICKQQVHQ-DAKYCHTCAYSKGVCAMCGKQV   85 (96)
Q Consensus        11 ~klatPd~~k~g~--~~~~~~g~r~i~eNKlLs~--k~r~~py~~~~C~~CK~~v~q-~~~YCq~CAYkkgiCamCGKki   85 (96)
                      ++||||||||+|+  +++.++|+|+||||||||+  ++||+||.+ +|++||++||| ++||||.|||++||||||||+|
T Consensus         1 tklatPd~~k~~~~~~~~~~~g~r~i~eNKlLs~~~~nPy~~~~~-~C~~CK~~v~q~g~~YCq~CAYkkGiCamCGKki   79 (90)
T PF10235_consen    1 TKLATPDPWKKGAMYRNTAESGGRKIGENKLLSKKKKNPYAPYSS-KCKICKTKVHQPGAKYCQTCAYKKGICAMCGKKI   79 (90)
T ss_pred             CccccCCccccCcccccccCCCCccccceeeecccccCcccccCc-cccccccccccCCCccChhhhcccCcccccCCee
Confidence            4799999999999  8999999999999999999  567777777 99999999999 6999999999999999999999


Q ss_pred             cccccccccCC
Q 034393           86 LDTKFYKQSNV   96 (96)
Q Consensus        86 ~dt~~y~qS~~   96 (96)
                      +||++|+||+|
T Consensus        80 ~dtk~ykqs~v   90 (90)
T PF10235_consen   80 LDTKNYKQSSV   90 (90)
T ss_pred             cccccccccCC
Confidence            99999999987

This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].

>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues

Probab=95.82  E-value=0.0012  Score=45.83  Aligned_cols=40  Identities=38%  Similarity=0.826  Sum_probs=32.9

Q ss_pred             CCCCCCC-ccccchhh-hcCCC-CCcccccccccCccccCCcc
Q 034393           45 RWTPYGN-TKCIICKQ-QVHQD-AKYCHTCAYSKGVCAMCGKQ   84 (96)
Q Consensus        45 r~~py~~-~~C~~CK~-~v~q~-~~YCq~CAYkkgiCamCGKk   84 (96)
                      +|.|-+. .+|-.|.+ .|.+. +..|+.||-..++||.||++
T Consensus        48 KYKpLt~p~kC~~C~qktVk~AYh~iC~~Ca~~~~vCaKC~k~   90 (92)
T PF10217_consen   48 KYKPLTQPKKCNKCQQKTVKHAYHVICDPCAKELKVCAKCGKP   90 (92)
T ss_pred             CcccCCCCccccccccchHHHHHHHHHHHHHHhhccCcccCCC
Confidence            4555553 69999997 55665 99999999999999999986

The region is conserved from plants to humans but its function is unknown.

>PF12773 DZR: Double zinc ribbon

Probab=92.34  E-value=0.1  Score=30.58  Aligned_cols=35  Identities=29%  Similarity=0.707  Sum_probs=23.9

Q ss_pred             ccchhhhcCCCCCcccccccccC-------ccccCCcccccc
Q 034393           54 CIICKQQVHQDAKYCHTCAYSKG-------VCAMCGKQVLDT   88 (96)
Q Consensus        54 C~~CK~~v~q~~~YCq~CAYkkg-------iCamCGKki~dt   88 (96)
                      |..|.+.+..++.||..|-..-.       +|.-||..+...
T Consensus         1 Cp~Cg~~~~~~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~~   42 (50)
T PF12773_consen    1 CPHCGTPNPDDAKFCPHCGTPLPPPDQSKKICPNCGAENPPN   42 (50)
T ss_pred             CCCcCCcCCccccCChhhcCChhhccCCCCCCcCCcCCCcCC
Confidence            55677777777777777766554       577777765543

>KOG3241 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.12  E-value=0.014  Score=45.81  Aligned_cols=44  Identities=36%  Similarity=0.754  Sum_probs=35.8

Q ss_pred             CCCCCCC-ccccchhh-hcCCC-CCcccccccccCccccCCcccccc
Q 034393           45 RWTPYGN-TKCIICKQ-QVHQD-AKYCHTCAYSKGVCAMCGKQVLDT   88 (96)
Q Consensus        45 r~~py~~-~~C~~CK~-~v~q~-~~YCq~CAYkkgiCamCGKki~dt   88 (96)
                      +|.|.+. .+|..|+. .|.|. |..|..||-...+||-|+|.+.++
T Consensus        60 KYKpLt~akkC~kC~~r~Vk~aYH~~Cr~CA~e~~vCAKC~ks~~~i  106 (227)
T KOG3241|consen   60 KYKPLTEAKKCQKCTKRNVKQAYHKLCRGCAKEQKVCAKCCKSVDQI  106 (227)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhccHHHh
Confidence            4555553 68999987 67777 999999999999999999976554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=83.09  E-value=0.43  Score=38.22  Aligned_cols=48  Identities=35%  Similarity=0.823  Sum_probs=32.6

Q ss_pred             ccccccccccCCCCCCCccccchhhhcC------CCCCcccccc---cccC-ccccCCccc
Q 034393           35 NENKLLSKKKRWTPYGNTKCIICKQQVH------QDAKYCHTCA---YSKG-VCAMCGKQV   85 (96)
Q Consensus        35 ~eNKlLs~k~r~~py~~~~C~~CK~~v~------q~~~YCq~CA---Ykkg-iCamCGKki   85 (96)
                      -|.++++-...=-||   .|.|||....      =+|++|..||   |++| .|-.||+..
T Consensus       183 Ee~~v~~~~~e~IPF---~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         183 EEAPVISGPGEKIPF---LCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             hhcccccCCCCCCce---eehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            344555443222344   9999997432      2489999999   6776 799999864

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=80.05  E-value=1.2  Score=39.53  Aligned_cols=35  Identities=26%  Similarity=0.696  Sum_probs=28.7

Q ss_pred             cccchhhhcCCCCCccccccccc--CccccCCccccc
Q 034393           53 KCIICKQQVHQDAKYCHTCAYSK--GVCAMCGKQVLD   87 (96)
Q Consensus        53 ~C~~CK~~v~q~~~YCq~CAYkk--giCamCGKki~d   87 (96)
                      .|..|...+..+++||+.|-.+-  ..|+-||..+..
T Consensus         3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~   39 (645)
T PRK14559          3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPV   39 (645)
T ss_pred             cCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCc
Confidence            68999999988999999998774  368888887643

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	96
1m3v_A	122	FLIN4, fusion of the LIM interacting domain of LDB	83.5

>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3

Probab=83.50  E-value=0.19  Score=33.07  Aligned_cols=35  Identities=20%  Similarity=0.321  Sum_probs=27.6

Q ss_pred             cccchhhhcC---------CCCCcccccccc----cCccccCCccccc
Q 034393           53 KCIICKQQVH---------QDAKYCHTCAYS----KGVCAMCGKQVLD   87 (96)
Q Consensus        53 ~C~~CK~~v~---------q~~~YCq~CAYk----kgiCamCGKki~d   87 (96)
                      +|..|+..|.         .+.-||..|-.+    +|.|+.|++.|.+
T Consensus        34 ~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~   81 (122)
T 1m3v_A           34 KCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSG   81 (122)
T ss_dssp             CCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred             CcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence            7888888874         235689999765    4699999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00