Citrus Sinensis ID: 034408

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHEHHEHHHHcc
Coil and Loop (DISEMBL)
MVGEIKEKllgnteendvdgQVKFRQKLWVESKKLWIVAAPAIFTRfssfglnvVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Flexible Loop (DISEMBL)
mvgeikekllgnteendvdgqVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Low Complexity Region (SEG)
MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Disordered region (IsUnstruct)
*******************GQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFL*
Disordered Region (DISOPRED)
******E****************FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYL***
Disordered Region (DISEMBL)
MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Disordered Region (DISPRO)
********************QVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLFLT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
255580250	488	multidrug resistance pump, putative [Ric	0.915	0.178	0.730	2e-29
224126053	489	predicted protein [Populus trichocarpa]	0.936	0.182	0.677	2e-27
79319118	404	MATE efflux family protein [Arabidopsis	0.894	0.210	0.609	5e-24
15223402	494	MATE efflux family protein [Arabidopsis	0.894	0.172	0.609	6e-24
359480996	498	PREDICTED: LOW QUALITY PROTEIN: protein	0.915	0.174	0.593	1e-23
334182997	491	MATE efflux family protein [Arabidopsis	0.884	0.171	0.588	2e-23
356504226	487	PREDICTED: protein TRANSPARENT TESTA 12-	0.905	0.176	0.597	3e-23
356506178	488	PREDICTED: protein TRANSPARENT TESTA 12-	0.915	0.178	0.586	5e-23
297846298	494	mate efflux family protein [Arabidopsis	0.894	0.172	0.574	5e-23
22329916	494	MATE efflux family protein [Arabidopsis	0.884	0.170	0.613	5e-23

>gi|255580250|ref|XP_002530955.1| multidrug resistance pump, putative [Ricinus communis] gi|223529470|gb|EEF31427.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 75/89 (84%), Gaps = 2/89 (2%)

Query: 1  MVGEIKEKLLGNTE--ENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQA 58
          M GEI EKLL   E  +N    QVKF+ KLW E+KK+W+VA PAIFTRFS+FG+NV+SQA
Sbjct: 1  MEGEIAEKLLKKAEKDQNQEVEQVKFKDKLWTETKKMWVVAGPAIFTRFSTFGINVISQA 60

Query: 59 FIGHIGATQLAAYSLVFTVLLRFANGILV 87
          FIGHIGAT+LAAYSLVFTVLLRFANGIL+
Sbjct: 61 FIGHIGATELAAYSLVFTVLLRFANGILL 89

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126053|ref|XP_002319744.1| predicted protein [Populus trichocarpa] gi|222858120|gb|EEE95667.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 76/90 (84%), Gaps = 1/90 (1%)

Query: 1  MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          M G+I EKLL    E D + +++F+ KLW E+KK+W+VA PAIFTRFS+FG+NVVSQAFI
Sbjct: 1  MEGKINEKLLRKGGEVDAE-ELRFKDKLWTETKKMWVVAGPAIFTRFSTFGINVVSQAFI 59

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILVSTL 90
          GHIG+T+LAAYSLVFTVLLRF+NGIL + L
Sbjct: 60 GHIGSTELAAYSLVFTVLLRFSNGILENVL 89

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319118|ref|NP_001031133.1| MATE efflux family protein [Arabidopsis thaliana] gi|332193446|gb|AEE31567.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 3  GEIKEKLLGNTEEN--DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          GE+   LL  T EN  +   ++  +QK+W+ESKKLWIVAAPAIFTRFS+FG++++SQ+FI
Sbjct: 6  GELTAALLKKTAENGGEEKDELGLKQKVWIESKKLWIVAAPAIFTRFSTFGVSIISQSFI 65

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILV 87
          GH+G  +LAAYS+ FTVLLRF+NGIL+
Sbjct: 66 GHLGPIELAAYSITFTVLLRFSNGILL 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223402|ref|NP_174587.1| MATE efflux family protein [Arabidopsis thaliana] gi|17065360|gb|AAL32834.1| Unknown protein [Arabidopsis thaliana] gi|21387205|gb|AAM48006.1| unknown protein [Arabidopsis thaliana] gi|332193445|gb|AEE31566.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 3  GEIKEKLLGNTEEN--DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          GE+   LL  T EN  +   ++  +QK+W+ESKKLWIVAAPAIFTRFS+FG++++SQ+FI
Sbjct: 6  GELTAALLKKTAENGGEEKDELGLKQKVWIESKKLWIVAAPAIFTRFSTFGVSIISQSFI 65

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILV 87
          GH+G  +LAAYS+ FTVLLRF+NGIL+
Sbjct: 66 GHLGPIELAAYSITFTVLLRFSNGILL 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480996|ref|XP_003632551.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 72/96 (75%), Gaps = 9/96 (9%)

Query: 1  MVGEIKEKLLGNTE----ENDVD-----GQVKFRQKLWVESKKLWIVAAPAIFTRFSSFG 51
          M GE+K+KLL   E    E +VD     G  + + KLW E+KKLW+VA PAIF RFS+FG
Sbjct: 1  MEGEMKKKLLNKVEKPGGEIEVDDEGEEGHEQLKDKLWSETKKLWVVAGPAIFARFSTFG 60

Query: 52 LNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILV 87
          +N++S  FIGHIG+T+LAAY+LV TVLLRFANGIL+
Sbjct: 61 VNIISHXFIGHIGSTELAAYALVATVLLRFANGILL 96

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182997|ref|NP_174586.2| MATE efflux family protein [Arabidopsis thaliana] gi|332193443|gb|AEE31564.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 72/85 (84%), Gaps = 1/85 (1%)

Query: 3  GEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGH 62
          GE+ E L+  T   + D ++  ++K+W+ESKKLW+VAAPAIFTR+S+FG+++V+QAFIGH
Sbjct: 6  GELTEALVKKTGREEED-ELGMKEKVWIESKKLWVVAAPAIFTRYSTFGVSMVTQAFIGH 64

Query: 63 IGATQLAAYSLVFTVLLRFANGILV 87
          +G T+LAAYS+ FT+LLRF+NGIL+
Sbjct: 65 LGPTELAAYSITFTILLRFSNGILL 89

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504226|ref|XP_003520898.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 73/87 (83%), Gaps = 1/87 (1%)

Query: 1  MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          M G +++KLL   E ++ D  +   +++W ESK++WIVAAPAIFTRF++FG+NV+SQAFI
Sbjct: 1  MEGNLEKKLLSKEEVSEED-NLSLVKRVWEESKEMWIVAAPAIFTRFTTFGINVISQAFI 59

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILV 87
          GHIG+ +LAAY+LVFTV++RFANGIL+
Sbjct: 60 GHIGSRELAAYALVFTVIIRFANGILL 86

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506178|ref|XP_003521864.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/87 (58%), Positives = 72/87 (82%)

Query: 1  MVGEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          M G +K+KLL   + ++ +  +   +++W ESK +WIVAAPAIFTRF++FGL+V+SQAFI
Sbjct: 1  MEGNLKQKLLSREKISEEEENLSLVKRVWEESKVMWIVAAPAIFTRFTTFGLSVISQAFI 60

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILV 87
          GHIG+ +LAAY+LVFTV++RFANGIL+
Sbjct: 61 GHIGSKELAAYALVFTVIIRFANGILL 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846298|ref|XP_002891030.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata] gi|297336872|gb|EFH67289.1| mate efflux family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 71/87 (81%), Gaps = 2/87 (2%)

Query: 3  GEIKEKLLGNTEEN--DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
          GE+   LL  T  N  + + ++  +Q++W+ESKKLW+VAAPAIFTRFS+FG++++SQ+FI
Sbjct: 6  GELTAALLKKTAANGGEEEDELGLKQRVWIESKKLWVVAAPAIFTRFSTFGVSIISQSFI 65

Query: 61 GHIGATQLAAYSLVFTVLLRFANGILV 87
          GH+G  +LAAYS+ FTVLLRF+NGIL+
Sbjct: 66 GHLGPIELAAYSITFTVLLRFSNGILL 92

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329916|ref|NP_174584.2| MATE efflux family protein [Arabidopsis thaliana] gi|19423994|gb|AAL87319.1| unknown protein [Arabidopsis thaliana] gi|22136880|gb|AAM91784.1| unknown protein [Arabidopsis thaliana] gi|332193440|gb|AEE31561.1| MATE efflux family protein [Arabidopsis thaliana]

 Score =  111 bits (278), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 71/88 (80%), Gaps = 4/88 (4%)

Query: 3  GEIKEKLLGNTEEN---DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAF 59
          GE+ E LL  + EN   D DG +  ++K+W ESKKLW+VA PAIFTRFS+ GL+++SQAF
Sbjct: 6  GEVTETLLKKSTENRGEDRDG-LGMKEKVWRESKKLWVVAGPAIFTRFSTSGLSLISQAF 64

Query: 60 IGHIGATQLAAYSLVFTVLLRFANGILV 87
          IGH+G+T+LAAYS+  TVLLRF+NGIL+
Sbjct: 65 IGHLGSTELAAYSITLTVLLRFSNGILL 92

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2206960	494	AT1G33110 "AT1G33110" [Arabido	0.894	0.172	0.609	4.2e-24
TAIR|locus:2037960	494	AT1G33080 "AT1G33080" [Arabido	0.884	0.170	0.613	4.2e-23
TAIR|locus:2037980	494	AT1G33090 "AT1G33090" [Arabido	0.894	0.172	0.563	4.2e-23
TAIR|locus:2175916	497	AT5G17700 "AT5G17700" [Arabido	0.884	0.169	0.428	4.7e-13
TAIR|locus:2096379	500	AT3G03620 "AT3G03620" [Arabido	0.852	0.162	0.393	1.5e-10
TAIR|locus:2172477	491	AT5G44050 "AT5G44050" [Arabido	0.768	0.148	0.394	2.3e-10
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.768	0.150	0.407	2.9e-10
TAIR|locus:2142544	489	AT5G10420 [Arabidopsis thalian	0.663	0.128	0.365	8e-10
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.736	0.134	0.414	8.4e-09
TAIR|locus:2028115	515	AT1G23300 "AT1G23300" [Arabido	0.8	0.147	0.381	2.8e-08

TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 53/87 (60%), Positives = 71/87 (81%)

Query:     3 GEIKEKLLGNTEEN--DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
             GE+   LL  T EN  +   ++  +QK+W+ESKKLWIVAAPAIFTRFS+FG++++SQ+FI
Sbjct:     6 GELTAALLKKTAENGGEEKDELGLKQKVWIESKKLWIVAAPAIFTRFSTFGVSIISQSFI 65

Query:    61 GHIGATQLAAYSLVFTVLLRFANGILV 87
             GH+G  +LAAYS+ FTVLLRF+NGIL+
Sbjct:    66 GHLGPIELAAYSITFTVLLRFSNGILL 92

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 54/88 (61%), Positives = 71/88 (80%)

Query:     3 GEIKEKLLGNTEEN---DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAF 59
             GE+ E LL  + EN   D DG +  ++K+W ESKKLW+VA PAIFTRFS+ GL+++SQAF
Sbjct:     6 GEVTETLLKKSTENRGEDRDG-LGMKEKVWRESKKLWVVAGPAIFTRFSTSGLSLISQAF 64

Query:    60 IGHIGATQLAAYSLVFTVLLRFANGILV 87
             IGH+G+T+LAAYS+  TVLLRF+NGIL+
Sbjct:    65 IGHLGSTELAAYSITLTVLLRFSNGILL 92

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 49/87 (56%), Positives = 72/87 (82%)

Query:     3 GEIKEKLLGNTEEN--DVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFI 60
             GE+   LL  T EN  + + ++  ++K+W+ESKKLW+VAAP+IFT+FS++G+++V+Q F+
Sbjct:     6 GELTAALLKKTTENGGEENDELGLKEKVWIESKKLWVVAAPSIFTKFSTYGVSLVTQGFV 65

Query:    61 GHIGATQLAAYSLVFTVLLRFANGILV 87
             GHIG T+LAAYS+ FTVLLRF+NGIL+
Sbjct:    66 GHIGPTELAAYSITFTVLLRFSNGILL 92

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2175916 AT5G17700 "AT5G17700" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.7e-13, P = 4.7e-13
 Identities = 36/84 (42%), Positives = 53/84 (63%)

Query:     3 GEIKEKLLGNTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGH 62
             GE++E+LL  +E       +  R+K+W E +K+W +A P+   R  SFG  VV+QAFIGH
Sbjct:     6 GEMEERLLNGSETEQRRESLYLRKKIWSEVRKMWRIALPSTLFRVMSFGCVVVAQAFIGH 65

Query:    63 IGATQLAAYSLVFTVLLRFANGIL 86
                T LAAY+L+ +  +RF  GI+
Sbjct:    66 SSETGLAAYALLQSTFIRFIYGIM 89

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096379 AT3G03620 "AT3G03620" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/89 (39%), Positives = 54/89 (60%)

Query:     4 EIKEKLLGNTEENDVDGQ------VKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQ 57
             E++E+LL   E +D +GQ      +  R K+W E  K+W +A P+   R +SFG  +V+Q
Sbjct:     6 EMEERLL--REGSDAEGQSNNRESIYLRTKVWSEVNKMWRIALPSSLFRMTSFGSIIVAQ 63

Query:    58 AFIGHIGATQLAAYSLVFTVLLRFANGIL 86
             AFIGH     LAAY+L+ +  +RF  G++
Sbjct:    64 AFIGHSSELGLAAYALLQSTFIRFLYGLM 92

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 30/76 (39%), Positives = 52/76 (68%)

Query:    12 NTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAY 71
             N  E + +G++K  +++W+E+KKLW +  PAIFTR ++  + V++QAF GH+G  +LAA 
Sbjct:    24 NVAEEE-NGEIK--KEIWLETKKLWRIVGPAIFTRVTTNLIFVITQAFAGHLGELELAAI 80

Query:    72 SLVFTVLLRFANGILV 87
             S+V  V++ F   + +
Sbjct:    81 SIVNNVIIGFNYSLFI 96

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 31/76 (40%), Positives = 51/76 (67%)

Query:    12 NTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAY 71
             +T E D +G    + ++ VE+KKLW +  PAIF+R +++ + V++QAF GH+G  +LAA 
Sbjct:    21 HTAEEDGEG---LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAI 77

Query:    72 SLVFTVLLRFANGILV 87
             S+V  V + F  G+L+
Sbjct:    78 SIVNNVTVGFNFGLLL 93

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 8.0e-10, P = 8.0e-10
 Identities = 23/63 (36%), Positives = 45/63 (71%)

Query:    25 RQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANG 84
             ++++W+E+KK+W +  P+IFT  +++ + +++QAF GH+G  +LAA S++    L F  G
Sbjct:    32 KREIWIETKKIWYIVGPSIFTGLATYSILIITQAFAGHLGDLELAAISIINNFTLGFNYG 91

Query:    85 ILV 87
             +L+
Sbjct:    92 LLL 94

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 29/70 (41%), Positives = 43/70 (61%)

Query:    18 VDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTV 77
             + G   F ++  +ES+KLW +A PAIFT  S + L  V+Q F GHI    LAA S+  +V
Sbjct:    54 ISGVGDFVREFRIESRKLWKLAGPAIFTTMSQYSLGAVTQVFAGHISTLALAAVSIENSV 113

Query:    78 LLRFANGILV 87
             +  F+ GI++
Sbjct:   114 IAGFSFGIML 123

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 29/76 (38%), Positives = 44/76 (57%)

Query:    12 NTEENDVDGQVKFRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAY 71
             +T+   + G   F ++   ESKKLW +A PAIFT F  + L  V+Q   GH+    LAA 
Sbjct:    25 DTDMPPISGGRDFIRQFAAESKKLWWLAGPAIFTSFCQYSLGAVTQILAGHVNTLALAAV 84

Query:    72 SLVFTVLLRFANGILV 87
             S+  +V+  F+ GI++
Sbjct:    85 SIQNSVISGFSVGIML 100

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130679	hypothetical protein (489 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IX1583	hypothetical protein (460 aa)			•						0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	2e-10
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-04
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	0.001

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGIL 86
          E+KKL  +AAP + T    + L+VVS  F+GH+G  +LAA SL  +        IL
Sbjct: 1  EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSIL 56

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 24 FRQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL---VFTVLLR 80
                   K L  +A P I          +V    +GH+GA  LAA  L   +F +++ 
Sbjct: 8  LEGPFKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLIIA 67

Query: 81 FANGILVST 89
             G+   T
Sbjct: 68 IFIGLGTGT 76

Length = 455

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 31 ESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL---VFTVLLRFANGILV 87
          E + L  +A P +  + +   +  V     G +GA  LAA +L   ++  +  F  G+L+
Sbjct: 1  ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGSSLWFPVFTFGMGLLL 60

Query: 88 ST 89
          + 
Sbjct: 61 AV 62

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.31
PRK10189	478	MATE family multidrug exporter; Provisional	99.11
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.08
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.03
PRK00187	464	multidrug efflux protein NorA; Provisional	98.98
PRK01766	456	multidrug efflux protein; Reviewed	98.78
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	98.74
PRK00187	464	multidrug efflux protein NorA; Provisional	98.63
PRK01766	456	multidrug efflux protein; Reviewed	98.32
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	97.93
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	97.91
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	97.87
PRK10189	478	MATE family multidrug exporter; Provisional	97.74
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	97.7
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	97.38
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	97.32
PRK15099	416	O-antigen translocase; Provisional	97.23
TIGR01695	502	mviN integral membrane protein MviN. This model re	97.09
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	96.86
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	96.35
TIGR01695	502	mviN integral membrane protein MviN. This model re	96.15
PRK10459	492	colanic acid exporter; Provisional	95.48
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	95.35
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	95.14
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	94.66
COG2244	480	RfbX Membrane protein involved in the export of O-	93.72

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.31  E-value=9.5e-12  Score=98.50  Aligned_cols=65  Identities=23%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      ...+.|+++++++|++++|+++.+++++|++|+||+|++++||++++++++++. +++..|+++|.
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~   76 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGT   76 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhH
Confidence            455899999999999999999999999999999999999999999999999876 66666666654

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.11  E-value=4.7e-10  Score=89.07  Aligned_cols=68  Identities=12%  Similarity=0.163  Sum_probs=59.2

Q ss_pred             HHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           25 RQKLWVE--SKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        25 ~~~~~~e--~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      |++.|+.  .|+++++++|++++++++.+++++|++|+||+|++++||+++++++.++. +.+..|+++|.
T Consensus        19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~   88 (478)
T PRK10189         19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGT   88 (478)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            5667765  89999999999999999999999999999999999999999999997765 66666666553

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.08  E-value=5e-10  Score=88.07  Aligned_cols=64  Identities=27%  Similarity=0.306  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI-GATQLAAYSLVFTVLLRFANGILVSTLYL   92 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~l-G~~aLAavsla~~~~~~~~~~~~~Gl~~a   92 (95)
                      .|++.|+++|+++|++++|+++.+++++|++|+||+ |++++||++++.++.+.. +.+..|++.|
T Consensus         4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g   68 (441)
T PRK10367          4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMS   68 (441)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            367899999999999999999999999999999999 677999999999887754 4444444443

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.03  E-value=5.6e-10  Score=89.62  Aligned_cols=69  Identities=35%  Similarity=0.357  Sum_probs=64.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           25 RQKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        25 ~~~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      ++..+.|.|+++++|.|+++.++.+++.+++|++|+||+|+.+||++++++++.+.+++++..|+..+-
T Consensus        20 ~~~~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~al   88 (473)
T KOG1347|consen   20 FSQLVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLAL   88 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhh
Confidence            344588999999999999999999999999999999999999999999999999999999999998763

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.98  E-value=4e-09  Score=83.12  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYL   92 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a   92 (95)
                      +++.|+++++++|.+++++++.+++++|++|+||+|++++||++++.++.+++ ..+..|++.|
T Consensus         6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~   68 (464)
T PRK00187          6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAA   68 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999998765 5555666554

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.78  E-value=5.7e-08  Score=75.60  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034408           27 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYL   92 (95)
Q Consensus        27 ~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a   92 (95)
                      +++++.|+++++++|.+++++++.+++.+|++++||+|++++||++++.++.... +.+..|++.|
T Consensus         6 ~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a   70 (456)
T PRK01766          6 KYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLA   70 (456)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4566899999999999999999999999999999999999999999998876543 4445555444

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=98.74  E-value=4.2e-08  Score=76.92  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034408           30 VESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI-GATQLAAYSLVFTVLLRFANGILVSTLY   91 (95)
Q Consensus        30 ~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~l-G~~aLAavsla~~~~~~~~~~~~~Gl~~   91 (95)
                      +..|+++++++|++++++++.+++++|++|+||+ |++++||+++++++.++. +++..|++.
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~   70 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGM   70 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence            4679999999999999999999999999999995 999999999999988754 344444433

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=98.63  E-value=2.1e-07  Score=73.42  Aligned_cols=65  Identities=23%  Similarity=0.268  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      .++..|+++|+++|..+.++++.....+|+.++||+|++++||.++++++.+++ +.+..|++.|.
T Consensus       231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~  295 (464)
T PRK00187        231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAV  295 (464)
T ss_pred             CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999988865 66666666654

>PRK01766 multidrug efflux protein; Reviewed

Probab=98.32  E-value=3.4e-06  Score=65.69  Aligned_cols=65  Identities=17%  Similarity=0.209  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      .++..|+++++++|..++++.+.....++..+++++|++++||.+++.++.++. +.+..|++.|.
T Consensus       234 ~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~~a~  298 (456)
T PRK01766        234 DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLAMAL  298 (456)
T ss_pred             CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            466789999999999999999999999999999999999999999999988766 66666766654

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=97.93  E-value=9.6e-06  Score=54.17  Aligned_cols=52  Identities=15%  Similarity=0.302  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           41 PAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        41 P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      |.+++++++.+.+++|+.++||+|++++|+.+++..+.++. +.+..|++.|.
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~   52 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATAL   52 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccc
Confidence            89999999999999999999999999999999999999876 55677776654

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=97.91  E-value=6.2e-05  Score=59.84  Aligned_cols=67  Identities=13%  Similarity=0.092  Sum_probs=60.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           26 QKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        26 ~~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      +..|+..|+++|+++|..++++.......+-+.+++++|++++||.+++..+..+. +.+..|++.|.
T Consensus       234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~~a~  300 (455)
T COG0534         234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIAQAV  300 (455)
T ss_pred             CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999998877 77777777664

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=97.87  E-value=9.9e-05  Score=58.20  Aligned_cols=63  Identities=11%  Similarity=0.035  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           30 VESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        30 ~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      ...|+++|+++|..+++.+......+-+.+++++|++++||.+++..+..+. +.+..|++.|.
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~~~-~~~~~gl~~a~  291 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLTFT-AYALDGFAYAV  291 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Confidence            4679999999999999999999999999999999999999999999988776 66677777664

>PRK10189 MATE family multidrug exporter; Provisional

Probab=97.74  E-value=0.0002  Score=57.05  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      .++..|+++|+++|..++++....-.++-+.+++++|+.++||.+++.++..+. +....|++.|.
T Consensus       254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~~~-~~~~~gi~~A~  318 (478)
T PRK10189        254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAALI-NLPGNALGSAS  318 (478)
T ss_pred             CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            356889999999999999999888888888999999999999999999988765 55666666654

>TIGR00797 matE putative efflux protein, MATE family

Probab=97.70  E-value=0.00034  Score=51.73  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~   81 (95)
                      .++..|+++++++|.++.++.......+|+.+++++|+.++++.+++..+..+.
T Consensus       211 ~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~~~  264 (342)
T TIGR00797       211 DWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVESLL  264 (342)
T ss_pred             CHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999988877643

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>TIGR00797 matE putative efflux protein, MATE family

Probab=97.38  E-value=0.00076  Score=49.89  Aligned_cols=52  Identities=35%  Similarity=0.425  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           41 PAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        41 P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      |..+++++..+++.+|++++|++|++++++.+++..+.++. ..+..|++.+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~   52 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTAT   52 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhH
Confidence            88999999999999999999999999999999998876644 44555555543

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=97.32  E-value=0.0017  Score=51.00  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           28 LWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGA-TQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        28 ~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~-~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      .+...|+++++++|..+.++...+...+-..+++++|+ +++||.++++++.+++ +.+..|++.|.
T Consensus       229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~~a~  294 (453)
T PRK09575        229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIAEGM  294 (453)
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHHHhh
Confidence            35678999999999999999988888888888999995 5899999999887765 66666666654

>PRK15099 O-antigen translocase; Provisional

Probab=97.23  E-value=0.0042  Score=47.84  Aligned_cols=63  Identities=13%  Similarity=-0.009  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIG-HIGATQLAAYSLVFTVLLRFANGILVSTLY   91 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG-~lG~~aLAavsla~~~~~~~~~~~~~Gl~~   91 (95)
                      ++..|+++++++|..++++........|..+++ ++|++++++.+.+..+.......+..++..
T Consensus       211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~  274 (416)
T PRK15099        211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSV  274 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            556899999999999999999999999999997 799999999999999865332333444443

>TIGR01695 mviN integral membrane protein MviN

Probab=97.09  E-value=0.0043  Score=48.40  Aligned_cols=53  Identities=9%  Similarity=-0.019  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~   81 (95)
                      ++..|++++.++|..++++.......+|+.+.+++|..++++.+.+..+..+.
T Consensus       219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~  271 (502)
T TIGR01695       219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLP  271 (502)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999998888999999999988877654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=96.86  E-value=0.019  Score=40.37  Aligned_cols=53  Identities=15%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHHHHHH
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI-GATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~l-G~~aLAavsla~~~~~~~   81 (95)
                      ++..|++++.++|..++.+...++.-+|.++++++ |.++++-.+++..+....
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~~~  254 (273)
T PF01943_consen  201 KKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLASAI  254 (273)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999999995 888999999998887654

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=96.35  E-value=0.015  Score=45.13  Aligned_cols=46  Identities=11%  Similarity=0.202  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHH
Q 034408           36 WIVAAPAIFTRFSSFGLNVVSQAFIGH-IGATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        36 l~la~P~ils~l~~~~~~ivdtifvG~-lG~~aLAavsla~~~~~~~   81 (95)
                      +|-+.|.+++++++.+++++|+++++| +|++++++++++.++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~   48 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLF   48 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHH
Confidence            466899999999999999999999999 6999999999999887654

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>TIGR01695 mviN integral membrane protein MviN

Probab=96.15  E-value=0.031  Score=43.62  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHH-HHHHHHHHHHHHH
Q 034408           35 LWIVAAPAIFTRFSSFGLNVVSQAFIGH-IGATQL-AAYSLVFTVLLRF   81 (95)
Q Consensus        35 ll~la~P~ils~l~~~~~~ivdtifvG~-lG~~aL-Aavsla~~~~~~~   81 (95)
                      ++|-+.=..++++++.+++++|.++++| +|++++ ++++++.++.+.+
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~   50 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFF   50 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHH
Confidence            4566667789999999999999999999 899999 7999999988654

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10459 colanic acid exporter; Provisional

Probab=95.48  E-value=0.087  Score=41.29  Aligned_cols=52  Identities=21%  Similarity=0.257  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHH
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGH-IGATQLAAYSLVFTVLLR   80 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~-lG~~aLAavsla~~~~~~   80 (95)
                      ++..|++++.++|.+.+++...+++-+|++++|+ +|+.+++..+.+..+..+
T Consensus       203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~  255 (492)
T PRK10459        203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATV  255 (492)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHH
Confidence            3567999999999999999999999999999998 588899998888877664

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=95.35  E-value=0.14  Score=39.71  Aligned_cols=35  Identities=17%  Similarity=0.156  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI   63 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~l   63 (95)
                      ++..|++++.++|..++++.....+.+|++++|+.
T Consensus       221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~  255 (488)
T TIGR02900       221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQR  255 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999984

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=95.14  E-value=0.43  Score=33.28  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHHH
Q 034408           34 KLWIVAAPAIFTRFSSFGLNVVSQAFIGH-IGATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        34 ~ll~la~P~ils~l~~~~~~ivdtifvG~-lG~~aLAavsla~~~~~~~   81 (95)
                      +.+|.+.|..++++......-+|.++++. +|.++++-.+++..+....
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~  232 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLP  232 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999 8999999999988877644

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=94.66  E-value=0.36  Score=38.33  Aligned_cols=52  Identities=15%  Similarity=0.130  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHH
Q 034408           30 VESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRF   81 (95)
Q Consensus        30 ~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~   81 (95)
                      ++.|++++...|.+++.....+..++|+.+.+++++-.+++..-+..+..+.
T Consensus       195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp  246 (451)
T PF03023_consen  195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLP  246 (451)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999988764

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=93.72  E-value=0.29  Score=38.10  Aligned_cols=49  Identities=18%  Similarity=0.327  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ChhHHHHHHHHHHH
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHI-GATQLAAYSLVFTV   77 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~l-G~~aLAavsla~~~   77 (95)
                      .+..|++++.++|..++.+...+.+-+|++++|+. |+++++-.+.+..+
T Consensus       209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i  258 (480)
T COG2244         209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRL  258 (480)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHH
Confidence            56899999999999999999999999999999984 76676666633333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	8e-07

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 26 QKLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSL---VFTVLLRFA 82
           +   E+  L  +A P +    +  G+  V     G + A  +AA S+   ++   + F 
Sbjct: 5  HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64

Query: 83 NGILVST 89
           G+L++ 
Sbjct: 65 VGLLMAL 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	98.68
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	97.74

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=98.68  E-value=6.7e-08  Score=72.25  Aligned_cols=66  Identities=21%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           27 KLWVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        27 ~~~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      ..+++.|+++++++|.+++++++.+++.+|++++||+|++++++++++.++..+. ..+..|++.+.
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~   71 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMAL   71 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999986654 44445555543

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=97.74  E-value=3.5e-05  Score=57.41  Aligned_cols=64  Identities=17%  Similarity=0.082  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 034408           29 WVESKKLWIVAAPAIFTRFSSFGLNVVSQAFIGHIGATQLAAYSLVFTVLLRFANGILVSTLYLF   93 (95)
Q Consensus        29 ~~e~k~ll~la~P~ils~l~~~~~~ivdtifvG~lG~~aLAavsla~~~~~~~~~~~~~Gl~~a~   93 (95)
                      ++..|+++++++|..++++.......+|+.+++++|+.++|+.++++.+..+. ..+..|++.+.
T Consensus       234 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~  297 (460)
T 3mkt_A          234 PKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAV  297 (460)
T ss_dssp             TSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999998766 45555665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00