Citrus Sinensis ID: 034422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILYC
Secondary Structure (PSIPRED)
ccccccccEEEEEccccHHHHHHHHHHcccccccccEEEEEEEEEccccEEEEccHHHHHHcHHHHHHHHHHHcccccHHHHHcccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccHccccEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccEEEEccHHHHHcccHHHHHHHHHHHHccccHHHHHcccccccEEEEc
Coil and Loop (DISEMBL)
matlkkipsvlmgcggvGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTliggfggnplilyc
Flexible Loop (DISEMBL)
matlkkipsvlMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLstliggfggnplilyc
Low Complexity Region (SEG)
MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILYC
Disordered region (IsUnstruct)
******IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILY*
Disordered Region (DISOPRED)
****KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICR***********IGGFGGNPLILYC
Disordered Region (DISEMBL)
MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILYC
Disordered Region (DISPRO)
****KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILYC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIGGFGGNPLILYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
255561228	376	aspartate kinase, putative [Ricinus comm	0.831	0.210	0.772	2e-26
224132262	376	predicted protein [Populus trichocarpa]	0.831	0.210	0.759	6e-26
225436033	377	PREDICTED: bifunctional aspartokinase/ho	0.831	0.209	0.721	6e-25
113205398	238	homoserine dehydrogenase family protein,	0.831	0.331	0.708	3e-24
449452676	377	PREDICTED: bifunctional aspartokinase/ho	0.936	0.236	0.666	3e-24
21537197	376	homoserine dehydrogenase-like protein [A	0.884	0.223	0.670	5e-24
15242147	376	glyceraldehyde-3-phosphate dehydrogenase	0.884	0.223	0.670	5e-24
79328303	378	glyceraldehyde-3-phosphate dehydrogenase	0.831	0.208	0.683	2e-23
79328311	378	glyceraldehyde-3-phosphate dehydrogenase	0.831	0.208	0.683	2e-23
297812293	376	homoserine dehydrogenase family protein	0.884	0.223	0.658	2e-22

>gi|255561228|ref|XP_002521625.1| aspartate kinase, putative [Ricinus communis] gi|223539137|gb|EEF40732.1| aspartate kinase, putative [Ricinus communis]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 67/79 (84%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +K IP +LMGCGGVGRQLLQHI+SCRSLHA+ GVHLRVVGV DSKSLVVASDV T+E ND
Sbjct: 1  MKSIPLLLMGCGGVGRQLLQHILSCRSLHASQGVHLRVVGVCDSKSLVVASDVLTRELND 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
            LSE+CRLK   S LSTL
Sbjct: 61 QFLSEVCRLKLNGSPLSTL 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132262|ref|XP_002328225.1| predicted protein [Populus trichocarpa] gi|222837740|gb|EEE76105.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 65/79 (82%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +K IP +LMGCGGVGRQLLQHIVSCRSLHA  GVHLRVVGV DSKSLV ASDV T+E ND
Sbjct: 1  MKNIPLLLMGCGGVGRQLLQHIVSCRSLHAQQGVHLRVVGVCDSKSLVFASDVITRELND 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
            LSE+CR K+  SSLS L
Sbjct: 61 QTLSEVCRFKSNGSSLSAL 79

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436033|ref|XP_002274680.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic [Vitis vinifera] gi|296083979|emb|CBI24367.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (295), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 67/79 (84%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +K IP +L+GCGGVGR LLQHIVSCRSLHA LGV LRVVGVSDSKSL++ASDVFT+E +D
Sbjct: 1  MKNIPVILLGCGGVGRHLLQHIVSCRSLHAKLGVRLRVVGVSDSKSLLLASDVFTRELDD 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
            L+E+ R+K G SSL TL
Sbjct: 61 TFLNEVSRVKLGGSSLKTL 79

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113205398|gb|AAU90301.2| homoserine dehydrogenase family protein, putative [Solanum demissum]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/79 (70%), Positives = 65/79 (82%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +K +P  LMGCGGVGRQLLQHIVSCRSLHA  G+HLRVVGV DSKSLVV +DV T EF+D
Sbjct: 1  MKNLPVFLMGCGGVGRQLLQHIVSCRSLHAKQGLHLRVVGVCDSKSLVVVADVLTSEFDD 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
          + L E+CR+K+  SSL TL
Sbjct: 61 SFLLEVCRVKSNGSSLQTL 79

Source: Solanum demissum

Species: Solanum demissum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452676|ref|XP_004144085.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase-like [Cucumis sativus]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/90 (66%), Positives = 66/90 (73%), Gaps = 1/90 (1%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +K IP +LMGCGGVGRQLL HIVSCR LHA  GVHLRV+GV DS+SLVVASDV T E ND
Sbjct: 1  MKTIPLILMGCGGVGRQLLHHIVSCRPLHAKQGVHLRVIGVGDSRSLVVASDVLTTELND 60

Query: 64 NLLSEICRLKAGHSSLSTLIGGFGGNPLIL 93
           +L E CR+K G  SLS L   FG   L L
Sbjct: 61 KILLETCRIKLGGGSLSDL-SNFGERKLFL 89

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537197|gb|AAM61538.1| homoserine dehydrogenase-like protein [Arabidopsis thaliana]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 1/85 (1%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +KKIP +LMGCGGVGR LLQHIVSCRSLHA +GVH+RV+GV DSKSLV   DV  +E ND
Sbjct: 1  MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 64 NLLSEICRLKAGHSSLSTLIGGFGG 88
           LLSE+C +K+  S+LS L G  GG
Sbjct: 61 ELLSEVCLIKSTGSALSKL-GALGG 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242147|ref|NP_197605.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|28393222|gb|AAO42041.1| putative homoserine dehydrogenase [Arabidopsis thaliana] gi|28973501|gb|AAO64075.1| putative homoserine dehydrogenase [Arabidopsis thaliana] gi|332005542|gb|AED92925.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 1/85 (1%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +KKIP +LMGCGGVGR LLQHIVSCRSLHA +GVH+RV+GV DSKSLV   DV  +E ND
Sbjct: 1  MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 64 NLLSEICRLKAGHSSLSTLIGGFGG 88
           LLSE+C +K+  S+LS L G  GG
Sbjct: 61 ELLSEVCLIKSTGSALSKL-GALGG 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79328303|ref|NP_001031916.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|332005543|gb|AED92926.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +KKIP +LMGCGGVGR LLQHIVSCRSLHA +GVH+RV+GV DSKSLV   DV  +E ND
Sbjct: 1  MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
           LLSE+C +K+  S+LS L
Sbjct: 61 ELLSEVCLIKSTGSALSKL 79

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79328311|ref|NP_001031917.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana] gi|332005544|gb|AED92927.1| glyceraldehyde-3-phosphate dehydrogenase-like protein [Arabidopsis thaliana]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +KKIP +LMGCGGVGR LLQHIVSCRSLHA +GVH+RV+GV DSKSLV   DV  +E ND
Sbjct: 1  MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query: 64 NLLSEICRLKAGHSSLSTL 82
           LLSE+C +K+  S+LS L
Sbjct: 61 ELLSEVCLIKSTGSALSKL 79

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812293|ref|XP_002874030.1| homoserine dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319867|gb|EFH50289.1| homoserine dehydrogenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 4  LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
          +KKI  +LMGCGGVGR LLQHI SCRSLHA +GV LRVVGV DSKSLV   DV  +E ND
Sbjct: 1  MKKIAVLLMGCGGVGRHLLQHIASCRSLHAKMGVQLRVVGVCDSKSLVAPMDVLKEELND 60

Query: 64 NLLSEICRLKAGHSSLSTLIGGFGG 88
           LLSE+CR+K+   +LS L G  GG
Sbjct: 61 ELLSEVCRIKSSGLALSKL-GALGG 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
TAIR|locus:2178998	378	AT5G21060 [Arabidopsis thalian	0.831	0.208	0.683	9.7e-25

TAIR|locus:2178998 AT5G21060 [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 54/79 (68%), Positives = 64/79 (81%)

Query:     4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFND 63
             +KKIP +LMGCGGVGR LLQHIVSCRSLHA +GVH+RV+GV DSKSLV   DV  +E ND
Sbjct:     1 MKKIPVLLMGCGGVGRHLLQHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELND 60

Query:    64 NLLSEICRLKAGHSSLSTL 82
              LLSE+C +K+  S+LS L
Sbjct:    61 ELLSEVCLIKSTGSALSKL 79


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       95        95   0.00091  102 3  11 22  0.47    29
                                                     29  0.43    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  504 (54 KB)
  Total size of DFA:  95 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.41u 0.18s 11.59t   Elapsed:  00:00:00
  Total cpu time:  11.41u 0.18s 11.59t   Elapsed:  00:00:00
  Start:  Mon May 20 16:27:54 2013   End:  Mon May 20 16:27:54 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;ISS

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=ISS

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00660115	homoserine dehydrogenase family protein (376 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.II.423.1	aspartate kinase (EC-2.7.2.4) (486 aa)	•	•	•		•		•		0.851
	gw1.XIV.3082.1	aspartate kinase (EC-2.7.2.4) (487 aa)	•	•	•		•		•		0.848
	fgenesh4_pg.C_scaffold_66000196	homoserine kinase (EC-2.7.1.39) (366 aa)	•		•			•	•		0.765
	estExt_fgenesh4_pm.C_1400029	histidinol dehydrogenase (EC-1.1.1.23); Catalyzes the sequential NAD-dependent oxidations of L- [...] (441 aa)	•			•			•		0.748
	eugene3.00013048	histidinol dehydrogenase (EC-1.1.1.23); Catalyzes the sequential NAD-dependent oxidations of L- [...] (441 aa)	•			•			•		0.747
	eugene3.27550001	Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to [...] (394 aa)							•		0.707
	DHS2	2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthet [...] (516 aa)							•		0.700
	CIPK25	SubName- Full=CBL-interacting protein kinase 25; (446 aa)							•		0.683
	eugene3.37950001	aspartate semialdehyde dehydrogenase (EC-1.2.1.11) (344 aa)	•					•	•		0.592
	gw1.13401.3.1	Predicted protein (303 aa)	•			•	•		•		0.536

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	95
PLN02700	377	PLN02700, PLN02700, homoserine dehydrogenase famil	1e-38
PRK06270	341	PRK06270, PRK06270, homoserine dehydrogenase; Prov	5e-06

>gnl|CDD|215377 PLN02700, PLN02700, homoserine dehydrogenase family protein

 Score =  131 bits (332), Expect = 1e-38
 Identities = 52/78 (66%), Positives = 61/78 (78%)

Query: 5  KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDN 64
          KKIP +L+GCGGVGR LL+HIVSCRSLHA  GV +RVVGV DSKSLV+A DV  +E +D 
Sbjct: 2  KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDA 61

Query: 65 LLSEICRLKAGHSSLSTL 82
          LLSE+C  K+  S LS L
Sbjct: 62 LLSEVCLAKSKGSPLSAL 79

Length = 377

>gnl|CDD|235763 PRK06270, PRK06270, homoserine dehydrogenase; Provisional

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 11 LMGCGGVGRQLLQHIVS-CRSLHANLGVHLRVVGVSDSKSLVVASD 55
          L+G GGVG+ + + +      L    G+ L+VV ++DS    +  D
Sbjct: 7  LIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPD 52

Length = 341

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
PLN02700	377	homoserine dehydrogenase family protein	99.72
PRK08374	336	homoserine dehydrogenase; Provisional	99.48
PRK06392	326	homoserine dehydrogenase; Provisional	99.39
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	99.35
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	99.28
PRK06813	346	homoserine dehydrogenase; Validated	99.25
PRK06270	341	homoserine dehydrogenase; Provisional	99.21
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.21
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	99.17
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	99.03
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	98.96
PLN02477	410	glutamate dehydrogenase	98.95
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	98.91
PRK09414	445	glutamate dehydrogenase; Provisional	98.9
PRK06349	426	homoserine dehydrogenase; Provisional	98.4
PRK14030	445	glutamate dehydrogenase; Provisional	98.39
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	98.36
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	98.34
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	98.17
PRK14031	444	glutamate dehydrogenase; Provisional	98.15
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	98.03
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	97.75
PTZ00324	1002	glutamate dehydrogenase 2; Provisional	97.24
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.92
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.74
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.69
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.63
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	95.35
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	95.27
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	95.17
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.15
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.75
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	94.75
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.67
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.64
COG2344	211	AT-rich DNA-binding protein [General function pred	94.38
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	94.16
PRK00048	257	dihydrodipicolinate reductase; Provisional	94.01
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	93.85
PRK13304	265	L-aspartate dehydrogenase; Reviewed	93.69
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	93.66
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	93.12
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	92.98
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	92.96
TIGR00036	266	dapB dihydrodipicolinate reductase.	92.92
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	92.92
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	92.64
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	92.48
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	92.33
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	92.19
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.71
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	91.65
PRK07236	386	hypothetical protein; Provisional	91.58
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	91.57
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	91.57
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	91.55
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	91.52
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	91.43
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.37
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	91.28
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.27
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.06
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.01
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	90.84
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	90.68
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	90.56
PRK11579	346	putative oxidoreductase; Provisional	90.48
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	90.32
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.19
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	89.89
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	89.69
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.49
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	89.28
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.01
PRK08328	231	hypothetical protein; Provisional	88.86
PRK06153	393	hypothetical protein; Provisional	88.61
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	88.58
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	88.57
PTZ00431	260	pyrroline carboxylate reductase; Provisional	88.15
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	88.08
PRK08013	400	oxidoreductase; Provisional	87.85
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	87.73
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.55
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	87.53
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	87.15
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	87.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	86.86
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	86.53
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	86.45
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	86.4
PRK06184	502	hypothetical protein; Provisional	86.1
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.05
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	86.04
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	86.02
COG3804	350	Uncharacterized conserved protein related to dihyd	85.86
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	85.81
PF09363	203	XFP_C: XFP C-terminal domain; InterPro: IPR018969	85.71
PRK06185	407	hypothetical protein; Provisional	85.55
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	85.42
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	85.32
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	85.27
PLN02602	350	lactate dehydrogenase	85.2
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	85.12
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	85.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	84.77
PRK08223	287	hypothetical protein; Validated	84.73
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	84.54
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	84.5
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	84.45
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	84.31
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	84.28
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	84.11
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	84.08
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	84.05
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	83.75
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	83.67
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	83.64
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	83.35
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	83.31
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	83.15
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.14
PRK07411	390	hypothetical protein; Validated	82.98
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	82.8
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	82.67
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	82.51
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	82.27
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	82.12
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	82.12
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	81.86
PRK08132	547	FAD-dependent oxidoreductase; Provisional	81.67
PLN00198	338	anthocyanidin reductase; Provisional	81.6
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	81.44
PRK09126	392	hypothetical protein; Provisional	81.11
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	80.98
PLN02256	304	arogenate dehydrogenase	80.39

>PLN02700 homoserine dehydrogenase family protein

Probab=99.72  E-value=1.9e-17  Score=133.93  Aligned_cols=79  Identities=66%  Similarity=1.071  Sum_probs=71.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l   82 (95)
                      |++|+|+|+|+|+||++|++||.+||++++++|+++|||||+||++++++++..++|||++.+.+....|+++..++++
T Consensus         1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~   79 (377)
T PLN02700          1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL   79 (377)
T ss_pred             CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence            8999999999999999999999999998888899999999999999999765556799999999977778888877766

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.48  E-value=9.1e-14  Score=109.73  Aligned_cols=72  Identities=21%  Similarity=0.365  Sum_probs=63.5

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG   84 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~   84 (95)
                      .++|+|+|||+||++++++|.++++.+ +++|++++|++|+||+++++  +  ++|+|++.+++.   |++++++..++.
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~--~--~~Gid~~~l~~~---~~~~~~~~~~~~   74 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIW--L--PEDIDLREAKEV---KENFGKLSNWGN   74 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCcccc--C--CCCCChHHHHHh---hhccCchhhccc
Confidence            589999999999999999999998865 55699999999999999998  5  889999988887   777787777653

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.39  E-value=7.4e-13  Score=104.89  Aligned_cols=58  Identities=26%  Similarity=0.267  Sum_probs=54.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      ++|+|+|||+||++++++|.++++. +++|++++||+|+||+++++  +  ++|||++.+++.
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~-~~~g~~l~VVaVsds~g~l~--~--~~Gldl~~l~~~   58 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDD-RRNNNGISVVSVSDSKLSYY--N--ERGLDIGKIISY   58 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHh-HhcCCCeEEEEEEECCCccc--C--CcCCChHHHHHH
Confidence            3799999999999999999999888 78899999999999999998  5  889999998887

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=99.35  E-value=1.1e-12  Score=104.52  Aligned_cols=68  Identities=57%  Similarity=0.961  Sum_probs=64.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICR   71 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~   71 (95)
                      |+.++|+++|||+||++|++||..+|+++.+-++.++||+||||++.++.+|+.|+.|+.+-.-|+..
T Consensus         1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~   68 (364)
T KOG0455|consen    1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIK   68 (364)
T ss_pred             CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999988877643

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=99.28  E-value=9.3e-12  Score=108.38  Aligned_cols=70  Identities=24%  Similarity=0.310  Sum_probs=60.7

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG   75 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~   75 (95)
                      ..|+.|+|+|+|||+||++|+++|.+|++.+ +++|++++|++|+||+++++  +  ++|+|...+.+..+.+..
T Consensus       454 ~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~--~--~~gi~~~~~~~~~~~~~~  524 (810)
T PRK09466        454 RAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLL--N--YDGLDASRALAFFDDEAV  524 (810)
T ss_pred             CcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCcccc--C--ccCCCHHHHHhhHHhhcC
Confidence            4678999999999999999999999999965 55699999999999999999  5  889999888876554433

>PRK06813 homoserine dehydrogenase; Validated

Probab=99.25  E-value=1.4e-11  Score=98.57  Aligned_cols=60  Identities=25%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      +++|+|+|||+||++|+++|.++++.+ +++|++++|++|+||+++++  +  ++|+|+..+++.
T Consensus         2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~--~--~~gi~~~~~l~~   62 (346)
T PRK06813          2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIH--N--EDGLSIHHLLRY   62 (346)
T ss_pred             eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhc--c--ccCCChhhhhhc
Confidence            489999999999999999999999865 56699999999999999998  5  789998876654

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.21  E-value=4e-11  Score=94.52  Aligned_cols=60  Identities=25%  Similarity=0.485  Sum_probs=54.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHH-HhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLH-ANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~-~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      +++|+|+|||+||++++++|.++++.+ +++|++++||+|+||+++++  +  ++|+|++++.+.
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~--~--~~Gi~~~~~~~~   62 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAI--D--PDGLDLELALKV   62 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCccc--C--cCCCCHHHHHHH
Confidence            689999999999999999999988855 55699999999999999999  5  789999988877

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.21  E-value=2.8e-11  Score=105.13  Aligned_cols=65  Identities=23%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRL   72 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~   72 (95)
                      .++++|+|+|||+||++|+++|.++++.++++|++++|++|+||+++++  +  ++|+|++.+.+....
T Consensus       463 ~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~--~--~~g~~~~~~~~~~~~  527 (819)
T PRK09436        463 DQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLL--D--EHGIDLDNWREELAE  527 (819)
T ss_pred             cccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccc--C--CCCCCHHHHHHHHhh
Confidence            4789999999999999999999999997766699999999999999998  5  889999887766543

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=99.17  E-value=5.3e-11  Score=89.88  Aligned_cols=66  Identities=24%  Similarity=0.325  Sum_probs=57.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL   82 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l   82 (95)
                      +|+..+++|.|||+||+.+++.+.+.         ..+||+|+||+|.++  |  |+|||++++++.   |++.+.++.+
T Consensus        28 ~l~~~~v~I~G~G~VG~~~a~~L~~~---------g~~vv~v~D~~g~~~--~--~~Gld~~~l~~~---~~~~g~l~~~   91 (227)
T cd01076          28 GLAGARVAIQGFGNVGSHAARFLHEA---------GAKVVAVSDSDGTIY--N--PDGLDVPALLAY---KKEHGSVLGF   91 (227)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHC---------CCEEEEEECCCCeEE--C--CCCCCHHHHHHH---HHhcCCcccC
Confidence            46778999999999999999988764         489999999999999  6  999999999988   7777888877


Q ss_pred             cC
Q 034422           83 IG   84 (95)
Q Consensus        83 ~~   84 (95)
                      +.
T Consensus        92 ~~   93 (227)
T cd01076          92 PG   93 (227)
T ss_pred             CC
Confidence            64

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=99.03  E-value=4.6e-10  Score=90.16  Aligned_cols=50  Identities=28%  Similarity=0.464  Sum_probs=46.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHh-cCCeEEEEEEEcCCcceec
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHAN-LGVHLRVVGVSDSKSLVVA   53 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k-~Gi~lrVvgVaDSk~~l~~   53 (95)
                      |+.++|+|+|+|+||++|+++|.++++.+.+ .|++++|++|+||++.+..
T Consensus         1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~   51 (333)
T COG0460           1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR   51 (333)
T ss_pred             CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc
Confidence            8899999999999999999999999887655 4999999999999999883

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=98.96  E-value=1.3e-09  Score=84.42  Aligned_cols=71  Identities=30%  Similarity=0.454  Sum_probs=57.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCC-cccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSS-LSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~-l~~l   82 (95)
                      ++-.+|+|-|||+||+.+++.+.+       .|  .+||+|+||+|.++  |  |+|||.++|.++.+.|++.++ ++.+
T Consensus        36 l~g~~vaIqGfGnVG~~~a~~L~e-------~G--akvvaVsD~~G~i~--~--~~Gld~~~l~~l~~~~~~~~~~v~~~  102 (254)
T cd05313          36 LKGKRVAISGSGNVAQYAAEKLLE-------LG--AKVVTLSDSKGYVY--D--PDGFTGEKLAELKEIKEVRRGRVSEY  102 (254)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCceEE--C--CCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            445689999999999999998876       34  89999999999999  6  899999999766665765555 5666


Q ss_pred             cCCCC
Q 034422           83 IGGFG   87 (95)
Q Consensus        83 ~~~~~   87 (95)
                      ...|+
T Consensus       103 ~~~~~  107 (254)
T cd05313         103 AKKYG  107 (254)
T ss_pred             hhcCC
Confidence            65554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PLN02477 glutamate dehydrogenase

Probab=98.95  E-value=1.3e-09  Score=89.26  Aligned_cols=65  Identities=26%  Similarity=0.271  Sum_probs=55.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      ++-.+|+|.|||+||+.+++++.+.       |  .+||||+||+|.++  |  |+|||.++|++.   |+++++++.++
T Consensus       204 l~g~~VaIqGfGnVG~~~A~~L~e~-------G--akVVaVsD~~G~iy--~--~~GLD~~~L~~~---k~~~g~l~~~~  267 (410)
T PLN02477        204 IAGQTFVIQGFGNVGSWAAQLIHEK-------G--GKIVAVSDITGAVK--N--ENGLDIPALRKH---VAEGGGLKGFP  267 (410)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHc-------C--CEEEEEECCCCeEE--C--CCCCCHHHHHHH---HHhcCchhccc
Confidence            4456799999999999999988653       4  79999999999999  6  899999999998   87888888775


Q ss_pred             C
Q 034422           84 G   84 (95)
Q Consensus        84 ~   84 (95)
                      +
T Consensus       268 ~  268 (410)
T PLN02477        268 G  268 (410)
T ss_pred             c
Confidence            4

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.91  E-value=2.4e-09  Score=80.52  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTL   82 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l   82 (95)
                      +|+..+++|.|||+||+.+++++.++         ..++|+|+||++.++  |  | |||.+++++.   ++..+++..+
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~---------G~~vV~vsD~~g~i~--~--~-Gld~~~l~~~---~~~~~~~~~~   82 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEE---------GGKVLAVSDPDGYIY--D--P-GITTEELINY---AVALGGSARV   82 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHc---------CCEEEEEEcCCCcEE--C--C-CCCHHHHHHH---HHhhCCcccc
Confidence            45667899999999999999999875         489999999999998  6  8 9999999887   4444555544


Q ss_pred             c
Q 034422           83 I   83 (95)
Q Consensus        83 ~   83 (95)
                      +
T Consensus        83 ~   83 (217)
T cd05211          83 K   83 (217)
T ss_pred             C
Confidence            3

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK09414 glutamate dehydrogenase; Provisional

Probab=98.90  E-value=1.8e-09  Score=89.26  Aligned_cols=68  Identities=29%  Similarity=0.388  Sum_probs=56.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCC-CCcccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGH-SSLSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~-g~l~~l   82 (95)
                      ++-.+|+|.||||||+.+++++.       +.|  .+||+|+||+|.++  |  |+|||.++|++.   |++. ++++.+
T Consensus       230 l~g~rVaIqGfGnVG~~~A~~L~-------~~G--akVVavsDs~G~iy--n--~~GLD~~~L~~~---k~~~~~~l~~~  293 (445)
T PRK09414        230 FEGKRVVVSGSGNVAIYAIEKAQ-------QLG--AKVVTCSDSSGYVY--D--EEGIDLEKLKEI---KEVRRGRISEY  293 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH-------HCC--CEEEEEEcCCceEE--C--CCCCCHHHHHHH---HHhcCCchhhh
Confidence            45578999999999999999883       344  89999999999999  6  899999999988   7665 578777


Q ss_pred             cCCCC
Q 034422           83 IGGFG   87 (95)
Q Consensus        83 ~~~~~   87 (95)
                      +..++
T Consensus       294 ~~~~~  298 (445)
T PRK09414        294 AEEFG  298 (445)
T ss_pred             hhhcC
Confidence            65443

>PRK06349 homoserine dehydrogenase; Provisional

Probab=98.40  E-value=4.9e-07  Score=73.41  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=41.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHH-hcCCeEEEEEEEcCCcc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHA-NLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~-k~Gi~lrVvgVaDSk~~   50 (95)
                      |+.|+|+|+|+|.||++++++|.++++.++ +.|.+++|++|+|++..
T Consensus         1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~   48 (426)
T PRK06349          1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE   48 (426)
T ss_pred             CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh
Confidence            788999999999999999999999887654 56999999999998643

>PRK14030 glutamate dehydrogenase; Provisional

Probab=98.39  E-value=6.5e-07  Score=74.35  Aligned_cols=64  Identities=19%  Similarity=0.315  Sum_probs=50.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLS   80 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~   80 (95)
                      ++--+|+|-||||||+..++.+.+       .|  .+||+|+||+|.+.  |  |+|||.+.+-.+.+.|++++++.
T Consensus       226 l~g~~vaIQGfGnVG~~aA~~L~e-------~G--akvVavSD~~G~i~--d--~~Gld~~~l~~l~~~k~~~~~~~  289 (445)
T PRK14030        226 IKGKTVAISGFGNVAWGAATKATE-------LG--AKVVTISGPDGYIY--D--PDGISGEKIDYMLELRASGNDIV  289 (445)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEcCCceEE--C--CCCCCHHHHHHHHHHHHhcCccH
Confidence            344678999999999999997743       45  79999999999999  6  89999998544444487777663

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=98.36  E-value=4.2e-07  Score=69.54  Aligned_cols=64  Identities=28%  Similarity=0.400  Sum_probs=53.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCC-cccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSS-LSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~-l~~l   82 (95)
                      ++--+++|=|||+||+.+++.+.+       +|  -+||+|+|++|.++  |  |+|||.++|+++   |++.+. +..+
T Consensus        30 l~g~~v~IqGfG~VG~~~a~~l~~-------~G--a~vv~vsD~~G~i~--~--~~Gld~~~l~~~---~~~~~~~v~~~   93 (244)
T PF00208_consen   30 LEGKRVAIQGFGNVGSHAARFLAE-------LG--AKVVAVSDSSGAIY--D--PDGLDVEELLRI---KEERGSRVDDY   93 (244)
T ss_dssp             STTCEEEEEESSHHHHHHHHHHHH-------TT--EEEEEEEESSEEEE--E--TTEEHHHHHHHH---HHHHSSHSTTG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------cC--CEEEEEecCceEEE--c--CCCchHHHHHHH---HHHhCCccccc
Confidence            455678999999999999998876       35  88999999999999  6  999999999998   555565 7766


Q ss_pred             c
Q 034422           83 I   83 (95)
Q Consensus        83 ~   83 (95)
                      .
T Consensus        94 ~   94 (244)
T PF00208_consen   94 P   94 (244)
T ss_dssp             T
T ss_pred             c
Confidence            6

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=98.34  E-value=1.1e-06  Score=73.33  Aligned_cols=68  Identities=24%  Similarity=0.388  Sum_probs=54.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCC-CCcccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGH-SSLSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~-g~l~~l   82 (95)
                      ++--+|+|=|+||||+..++.+.+       .|  -+||+|+||+|.++  |  |+|||.++|..+.+.|+.. ++++.+
T Consensus       235 l~Gk~VaVqG~GnVg~~aa~~L~e-------~G--akVVavSD~~G~iy--~--~~Gld~~~l~~l~~~k~~~~g~i~~~  301 (454)
T PTZ00079        235 LEGKTVVVSGSGNVAQYAVEKLLQ-------LG--AKVLTMSDSDGYIH--E--PNGFTKEKLAYLMDLKNVKRGRLKEY  301 (454)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEcCCCcEE--C--CCCCCHHHHHHHHHHHhhcCCcHHhh
Confidence            344678999999999999987754       44  79999999999999  6  8999999986655557654 667766


Q ss_pred             cC
Q 034422           83 IG   84 (95)
Q Consensus        83 ~~   84 (95)
                      ..
T Consensus       302 ~~  303 (454)
T PTZ00079        302 AK  303 (454)
T ss_pred             hh
Confidence            54

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=98.17  E-value=2.5e-06  Score=57.01  Aligned_cols=36  Identities=36%  Similarity=0.696  Sum_probs=30.9

Q ss_pred             eeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecc
Q 034422           13 GCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVAS   54 (95)
Q Consensus        13 G~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~   54 (95)
                      |||+||++|+++|.++++.     ++++|++|+||+ +++..
T Consensus         1 G~G~VG~~l~~~l~~~~~~-----~~~~v~~v~~~~-~~~~~   36 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQER-----IDLEVVGVADRS-MLISK   36 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHH-----CEEEEEEEEESS-EEEET
T ss_pred             CCCHHHHHHHHHHHhCccc-----CCEEEEEEEECC-chhhh
Confidence            8999999999999998877     899999999999 77743

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=98.15  E-value=4.4e-06  Score=69.42  Aligned_cols=70  Identities=24%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC-CCCcccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG-HSSLSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~-~g~l~~l   82 (95)
                      ++--+|+|.||||||+..++.+.+       .|  -+||+|+||+|.+.  +  ++|||.+++.-+...|+. ++++..+
T Consensus       226 l~g~rVaVQGfGNVG~~aA~~L~e-------~G--AkVVaVSD~~G~iy--~--~~Gld~~~l~~~~~~k~~~~~~v~~~  292 (444)
T PRK14031        226 LKGKVCLVSGSGNVAQYTAEKVLE-------LG--GKVVTMSDSDGYIY--D--PDGIDREKLDYIMELKNLYRGRIREY  292 (444)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCCeEE--C--CCCCCHHHHHHHHHHHhhcCCchhhh
Confidence            344678999999999999987754       45  78999999999998  5  899999988733333554 5566666


Q ss_pred             cCCC
Q 034422           83 IGGF   86 (95)
Q Consensus        83 ~~~~   86 (95)
                      ...+
T Consensus       293 ~~~~  296 (444)
T PRK14031        293 AEKY  296 (444)
T ss_pred             Hhhc
Confidence            5433

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=98.03  E-value=7.6e-06  Score=67.70  Aligned_cols=63  Identities=29%  Similarity=0.403  Sum_probs=50.5

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      +-.+|+|=|+||||+.+++.+.+       .|  -+||+++||+|.++  |  ++|||.+.|++.   |++.+++..+.
T Consensus       206 ~G~rVaVQG~GNVg~~aa~~l~~-------~G--Akvva~sds~g~i~--~--~~Gld~~~l~~~---~~~~~~v~~~~  268 (411)
T COG0334         206 EGARVAVQGFGNVGQYAAEKLHE-------LG--AKVVAVSDSKGGIY--D--EDGLDVEALLEL---KERRGSVAEYA  268 (411)
T ss_pred             CCCEEEEECccHHHHHHHHHHHH-------cC--CEEEEEEcCCCcee--c--CCCCCHHHHHHH---hhhhhhHHhhc
Confidence            44678999999999999988763       25  68999999999998  6  899999999965   75555555443

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=97.75  E-value=5.3e-05  Score=64.19  Aligned_cols=66  Identities=24%  Similarity=0.361  Sum_probs=53.3

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG   84 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~   84 (95)
                      +--++++=||||||+.-++.+.+.-         =++++|.||+|.++  |  |+|||..+|.++.+.|   ..+++++.
T Consensus       250 kgkr~~i~G~Gnv~~~aa~~l~~~G---------~kvvavsD~~G~l~--n--p~Gid~~eL~~~~~~k---~~i~~f~~  313 (514)
T KOG2250|consen  250 KGKRVVIQGFGNVGGHAAKKLSEKG---------AKVVAVSDSKGVLI--N--PDGIDIEELLDLADEK---KTIKSFDG  313 (514)
T ss_pred             CceEEEEeCCCchHHHHHHHHHhcC---------CEEEEEEcCceeEE--C--CCCCCHHHHHHHHHhh---cccccccc
Confidence            3457899999999998888776643         47999999999999  6  8899999999997777   66666655


Q ss_pred             CC
Q 034422           85 GF   86 (95)
Q Consensus        85 ~~   86 (95)
                      +-
T Consensus       314 ~~  315 (514)
T KOG2250|consen  314 AK  315 (514)
T ss_pred             cc
Confidence            43

>PTZ00324 glutamate dehydrogenase 2; Provisional

Probab=97.24  E-value=0.00053  Score=62.07  Aligned_cols=58  Identities=17%  Similarity=0.269  Sum_probs=47.8

Q ss_pred             eeeCEEEEe--eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccc
Q 034422            5 KKIPSVLMG--CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLST   81 (95)
Q Consensus         5 k~I~v~LiG--~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~   81 (95)
                      +.+.+++.|  +|+||..-+.+..            .+||||+|++|.++  |  |+|||.++|.++   ++.+++++.
T Consensus       662 ~~~Tv~~~Ggp~GDVGgN~~lls~------------~klVAv~D~~G~~~--D--P~GLd~~EL~rl---~~~~~s~~~  721 (1002)
T PTZ00324        662 EEVTKFQTGGPDGDLGSNELLLSK------------EKTVGIVDGSGVLH--D--PEGLNREELRRL---AHHRLPARE  721 (1002)
T ss_pred             cCCEEEEECCCCchHHHHHHHHhC------------CEEEEEEcCCCEEE--C--CCCCCHHHHHHH---HHcCCCccc
Confidence            456789999  9999999887631            49999999999999  7  999999999998   444555653

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.92  E-value=0.0012  Score=50.93  Aligned_cols=41  Identities=17%  Similarity=0.291  Sum_probs=33.5

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |.+|+.++|.|||+|.+|+.+++.+.+..       -++++++|+|+.
T Consensus         1 ~~~m~~irIGIIG~G~IG~~~a~~L~~~~-------~~~el~aV~dr~   41 (271)
T PRK13302          1 MSSRPELRVAIAGLGAIGKAIAQALDRGL-------PGLTLSAVAVRD   41 (271)
T ss_pred             CCCCCeeEEEEECccHHHHHHHHHHHhcC-------CCeEEEEEECCC
Confidence            78999999999999999999998876531       136788888864

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.74  E-value=0.0015  Score=52.58  Aligned_cols=37  Identities=27%  Similarity=0.535  Sum_probs=30.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.|+|+++|+|++|+..++.+.+..        ++++|||.|++
T Consensus         1 M~kIRVgIVG~GnIGr~~a~al~~~p--------d~ELVgV~dr~   37 (324)
T TIGR01921         1 MSKIRAAIVGYGNLGRSVEKAIQQQP--------DMELVGVFSRR   37 (324)
T ss_pred             CCCcEEEEEeecHHHHHHHHHHHhCC--------CcEEEEEEcCC
Confidence            67899999999999999888776422        47899998876

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.69  E-value=0.015  Score=37.86  Aligned_cols=36  Identities=28%  Similarity=0.567  Sum_probs=28.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+|.+||+|..|+..++.+.+..+       +.+++||+|.+.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~-------~~~v~~v~d~~~   36 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSP-------DFEVVAVCDPDP   36 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTT-------TEEEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCC-------CcEEEEEEeCCH
Confidence            689999999999998877766533       259999999754

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.63  E-value=0.016  Score=39.58  Aligned_cols=35  Identities=26%  Similarity=0.523  Sum_probs=30.9

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+|+|+|+ |..|+.+++.+.+..        +++++++.|++.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~--------~~~lv~~v~~~~   36 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESP--------GFELVGAVDRKP   36 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHST--------TEEEEEEEETTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcC--------CcEEEEEEecCC
Confidence            68999999 999999999988744        389999999987

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=95.35  E-value=0.023  Score=40.94  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=28.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |+|.|-|||-+||.+++.+..+.        +++||+|.|.
T Consensus         1 ikVgINGfGRIGR~v~r~~~~~~--------~~evvaInd~   33 (151)
T PF00044_consen    1 IKVGINGFGRIGRLVLRAALDQP--------DIEVVAINDP   33 (151)
T ss_dssp             EEEEEESTSHHHHHHHHHHHTST--------TEEEEEEEES
T ss_pred             CEEEEECCCcccHHHHHhhcccc--------eEEEEEEecc
Confidence            68999999999999999998332        4899999883

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.27  E-value=0.025  Score=45.59  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |+..+ ++|+|+|||.+|+..++.+.+.        =++++|+|+|+
T Consensus         1 ~~~~~-lrVaI~G~GrIGr~~~r~~~~~--------~~velvaI~D~   38 (338)
T PLN02358          1 MADKK-IRIGINGFGRIGRLVARVVLQR--------DDVELVAVNDP   38 (338)
T ss_pred             CCCCc-eEEEEEeecHHHHHHHHHHhhC--------CCcEEEEEeCC
Confidence            45553 8999999999999999887541        15899999984

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=95.17  E-value=0.019  Score=45.70  Aligned_cols=34  Identities=24%  Similarity=0.501  Sum_probs=28.5

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|+|+|+|.+|+.+++.+.++.        +++|+||+|++
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~--------d~eLvav~d~~   35 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQP--------DMELVGVAKTK   35 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCC--------CcEEEEEECCC
Confidence            68999999999999999887631        48899999864

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.15  E-value=0.021  Score=45.63  Aligned_cols=37  Identities=22%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .|+.+++.|||+|++|+.++..+.+.      .  ++++++|+|.
T Consensus         1 ~m~klrVAIIGtG~IGt~hm~~l~~~------~--~velvAVvdi   37 (302)
T PRK08300          1 MMSKLKVAIIGSGNIGTDLMIKILRS------E--HLEPGAMVGI   37 (302)
T ss_pred             CCCCCeEEEEcCcHHHHHHHHHHhcC------C--CcEEEEEEeC
Confidence            37889999999999999988877651      1  4788999864

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.75  E-value=0.031  Score=42.76  Aligned_cols=22  Identities=18%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++|.|+|||.+|+.++++|.+.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC
Confidence            5899999999999999998763

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=94.75  E-value=0.029  Score=40.06  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=26.8

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|+|||.+|+.+++++.+.        -++++++|.|
T Consensus         1 ikv~I~G~GriGr~v~~~~~~~--------~~~~lvai~d   32 (149)
T smart00846        1 IKVGINGFGRIGRLVLRALLER--------PDIEVVAIND   32 (149)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--------CCCEEEEeec
Confidence            4789999999999999987752        1588999988

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.67  E-value=0.036  Score=37.32  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=27.0

Q ss_pred             CEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            8 PSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         8 ~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ||+|+| .|.||+.|+++|.+ .+       ++.++.++.++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~-hp-------~~e~~~~~~~~~   35 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAE-HP-------DFELVALVSSSR   35 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TS-------TEEEEEEEESTT
T ss_pred             CEEEECCCCHHHHHHHHHHhc-CC-------CccEEEeeeecc
Confidence            589999 99999999998877 22       367777777655

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.64  E-value=0.04  Score=41.71  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=27.6

Q ss_pred             ceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+.+++.|||+|++++. .+..+.+....       +++++|+|++.
T Consensus         1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~-------~~~vav~d~~~   40 (342)
T COG0673           1 MKMIRVGIIGAGGIAGKAHLPALAALGGG-------LELVAVVDRDP   40 (342)
T ss_pred             CCeeEEEEEcccHHHHHHhHHHHHhCCCc-------eEEEEEecCCH
Confidence            78999999999977753 55555442222       88999988644

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.38  E-value=0.026  Score=43.48  Aligned_cols=54  Identities=24%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHH
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLS   67 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll   67 (95)
                      +..+++|||+||.|+||+.-...     ++.|  .+++++.|.....++.-  ..++.-..+-
T Consensus        83 ~~tnviiVG~GnlG~All~Y~f~-----~~~~--~~iv~~FDv~~~~VG~~--~~~v~V~~~d  136 (211)
T COG2344          83 KTTNVIIVGVGNLGRALLNYNFS-----KKNG--MKIVAAFDVDPDKVGTK--IGDVPVYDLD  136 (211)
T ss_pred             cceeEEEEccChHHHHHhcCcch-----hhcC--ceEEEEecCCHHHhCcc--cCCeeeechH
Confidence            56889999999999999975443     4444  88999999987777654  3335444333

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=94.16  E-value=0.04  Score=45.60  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=27.5

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|.|||.|||.++|.+.+++      .=.++|++|-|
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~------~~~~evvaINd   94 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRK------DSPLDVVAIND   94 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCC------CCCeEEEEEcC
Confidence            79999999999999999987632      11478898876

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=94.01  E-value=0.054  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.531  Sum_probs=28.2

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ++|+|+|+ |.+|+.+++.+.+..        ++++++++|++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~--------~~elvav~d~~~   37 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAE--------DLELVAAVDRPG   37 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEecCC
Confidence            68999999 999999998876531        378889888754

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=93.85  E-value=0.077  Score=41.91  Aligned_cols=35  Identities=31%  Similarity=0.646  Sum_probs=28.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.+||||++|+.+++.+..-+       .++..++|.|++
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~-------~~~e~v~v~D~~   35 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGR-------VDFELVAVYDRD   35 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCC-------cceeEEEEecCC
Confidence            36899999999999999998744       367888888864

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=93.69  E-value=0.081  Score=40.44  Aligned_cols=36  Identities=19%  Similarity=0.441  Sum_probs=28.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ++|.|||+|.+|+.+++.+.+..       .++++++|+|++.
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~-------~~~elv~v~d~~~   37 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGR-------INAELYAFYDRNL   37 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCC-------CCeEEEEEECCCH
Confidence            47899999999999998886532       2578888888753

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.66  E-value=0.068  Score=43.60  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=30.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|=|||-+||-+++.+.+|..       +++||||.|
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~-------dieVVaInd   34 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDG-------DIEVVAIND   34 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCC-------CeEEEEEec
Confidence            689999999999999999988654       799999999

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=93.12  E-value=0.12  Score=42.43  Aligned_cols=40  Identities=33%  Similarity=0.521  Sum_probs=30.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |..++|+|=|||-+||.++|.+.++. .   .+=+++||||-|.
T Consensus         1 ~m~ikVgINGFGRIGR~v~R~~~~~~-~---~~~~ievVAINd~   40 (361)
T PTZ00434          1 MAPIKVGINGFGRIGRMVFQAICDQG-L---IGTEIDVVAVVDM   40 (361)
T ss_pred             CCceEEEEECcChHHHHHHHHHHHcc-c---CCCCeEEEEEeCC
Confidence            44589999999999999999876521 0   1235999999983

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=92.98  E-value=0.098  Score=41.35  Aligned_cols=38  Identities=5%  Similarity=0.196  Sum_probs=29.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.+|.|||||.+|+.+++.|.+..      ...+++++|.|+..
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~------~~~~~l~~V~~~~~   39 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADA------AQPCQLAALTRNAA   39 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCC------CCceEEEEEecCCH
Confidence            468899999999999999986532      22578888887653

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=92.96  E-value=0.12  Score=41.69  Aligned_cols=35  Identities=23%  Similarity=0.503  Sum_probs=27.7

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|.|||.|||.++|.+.++..     .=++++++|-|
T Consensus         2 ~~IaInGfGrIGR~~lr~l~e~~~-----~~~l~vvaind   36 (336)
T PRK13535          2 IRVAINGFGRIGRNVLRALYESGR-----RAEITVVAINE   36 (336)
T ss_pred             eEEEEECcCHHHHHHHHHHHhcCC-----CCceEEEEecC
Confidence            578999999999999999776321     12589999975

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=92.92  E-value=0.12  Score=39.69  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=27.6

Q ss_pred             eCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|+|+| +|..|+.+++++.+..        ++++++++|+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~--------~~elvav~d~   35 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAE--------GLQLVAAFER   35 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEec
Confidence            6899999 6999999999987642        3788999984

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=92.92  E-value=0.082  Score=38.94  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=29.5

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .....+|+|+|+|.+|+++++.+.     +...|  ++++|++|.+
T Consensus        81 ~~~~~rV~IIGaG~iG~~l~~~~~-----~~~~g--~~ivgv~D~d  119 (213)
T PRK05472         81 LDRTWNVALVGAGNLGRALLNYNG-----FEKRG--FKIVAAFDVD  119 (213)
T ss_pred             CCCCcEEEEECCCHHHHHHHHhhh-----cccCC--cEEEEEEECC
Confidence            345678999999999999988642     12334  7899999864

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=92.64  E-value=0.16  Score=40.68  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=27.0

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      +|+|.|||.|||.+++.+.++..     +-+++|++|.|
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~-----~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGE-----RLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCC-----CCCeEEEEEec
Confidence            58999999999999999775321     12588999987

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=92.48  E-value=0.051  Score=41.39  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.2

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+++.-+|+|+|+|+||...++.+.+
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~Lar   32 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALAR   32 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHHH
Confidence            35677899999999999999988765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=92.33  E-value=0.15  Score=41.24  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=27.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|=|||-+||.++|.+.++      .  +++||+|-|
T Consensus         3 ~ki~INGfGRIGr~v~r~~~~~------~--~~~vvaiNd   34 (337)
T PTZ00023          3 VKLGINGFGRIGRLVFRAALER------E--DVEVVAIND   34 (337)
T ss_pred             eEEEEECcChHHHHHHHHHHhc------C--CeEEEEecC
Confidence            6899999999999999986642      1  589999987

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=92.19  E-value=0.15  Score=41.17  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=25.8

Q ss_pred             EEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            9 SVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         9 v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |+|+|||.+|+.+++.+.++      .  +++||||+|.
T Consensus         1 VaInG~GrIGr~varav~~~------~--d~elVaVnD~   31 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQ------D--DMKLVGVTKT   31 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhC------C--CcEEEEEecC
Confidence            58999999999999997663      1  4789999994

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.71  E-value=0.088  Score=35.79  Aligned_cols=23  Identities=22%  Similarity=0.606  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHhh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .-+|+|+|+|++|..+++.+.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~   24 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS   24 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh
Confidence            35789999999999999998773

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=91.65  E-value=0.12  Score=32.60  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             CEEEEeeccccHHHHHHHHhhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCR   29 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~   29 (95)
                      +|.+||+|++|+++++-+.+..
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g   22 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASG   22 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCC
Confidence            5789999999999999887753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07236 hypothetical protein; Provisional

Probab=91.58  E-value=0.21  Score=38.93  Aligned_cols=36  Identities=17%  Similarity=0.122  Sum_probs=29.4

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG   43 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg   43 (95)
                      |-.|+..+|+|||-|-+|.+++..+.+       .|+++.|+=
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~-------~G~~v~v~E   36 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRR-------AGWDVDVFE   36 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHh-------CCCCEEEEe
Confidence            778999999999999999999988876       455555543

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=91.57  E-value=0.18  Score=41.00  Aligned_cols=32  Identities=16%  Similarity=0.405  Sum_probs=26.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|-|||-+||.+++.+.++      .  +++||+|-|
T Consensus         3 ~ki~INGfGRIGR~~~r~~~~~------~--~~~vvaINd   34 (343)
T PRK07729          3 TKVAINGFGRIGRMVFRKAIKE------S--AFEIVAINA   34 (343)
T ss_pred             eEEEEECcChHHHHHHHHHhhc------C--CcEEEEecC
Confidence            6899999999999999986641      1  488999977

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=91.57  E-value=0.21  Score=40.38  Aligned_cols=32  Identities=22%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|=|||-+||.++|.+.++      .  +++||+|-|
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~------~--~~~vvaiNd   34 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKR------S--DIEIVAIND   34 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHC------C--CCEEEEEec
Confidence            6899999999999999986541      1  589999977

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.55  E-value=0.12  Score=37.83  Aligned_cols=24  Identities=21%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+.++|.+||+|++|+++++.+.+
T Consensus         2 m~~~kI~iIG~G~mg~ala~~l~~   25 (245)
T PRK07634          2 LKKHRILFIGAGRMAEAIFSGLLK   25 (245)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh
Confidence            556789999999999999988764

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=91.52  E-value=0.12  Score=39.92  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +..+|+|+|+|++|..+++.+++-
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~   33 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARL   33 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHc
Confidence            467899999999999999999874

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=91.43  E-value=0.24  Score=39.64  Aligned_cols=26  Identities=27%  Similarity=0.449  Sum_probs=22.0

Q ss_pred             CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      |.+|  ++|+|+|- |.||++|++++.++
T Consensus         1 m~~~--~~IaIvGATG~vG~eLlrlL~~~   27 (336)
T PRK05671          1 MSQP--LDIAVVGATGTVGEALVQILEER   27 (336)
T ss_pred             CCCC--CEEEEEccCCHHHHHHHHHHhhC
Confidence            5555  78899996 99999999999963

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.37  E-value=0.09  Score=41.14  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=22.6

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+++.-+|+|+|+|+||...++.+++
T Consensus        26 ~kL~~s~VlVvG~GGVGs~vae~Lar   51 (268)
T PRK15116         26 QLFADAHICVVGIGGVGSWAAEALAR   51 (268)
T ss_pred             HHhcCCCEEEECcCHHHHHHHHHHHH
Confidence            35677899999999999999998876

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=91.28  E-value=0.28  Score=41.35  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=28.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      |+ ++|.|=|||-|||.++|.+.++      .+=+++||+|-|
T Consensus        74 ~~-ikVgINGFGRIGR~vlR~~~~~------~~~~ievVaINd  109 (442)
T PLN02237         74 AK-LKVAINGFGRIGRNFLRCWHGR------KDSPLDVVVVND  109 (442)
T ss_pred             ce-EEEEEECCChHHHHHHHHHHHc------cCCCeEEEEECC
Confidence            54 7999999999999999986642      123589999977

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=91.27  E-value=0.25  Score=38.41  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |.+|...+|+|||-|.+|.+++-.+.+
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~   27 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALAD   27 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhc
Confidence            777888999999999999999987654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.06  E-value=0.17  Score=34.48  Aligned_cols=20  Identities=25%  Similarity=0.627  Sum_probs=18.0

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|++|.++++.+.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~   20 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR   20 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH
Confidence            58999999999999998866

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.01  E-value=0.14  Score=35.90  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=24.2

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .+++|.+||.|+||++|.+.+.+       .|  ..|++|.+.
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~-------ag--~~v~~v~sr   42 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALAR-------AG--HEVVGVYSR   42 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHH-------TT--SEEEEESSC
T ss_pred             CccEEEEECCCHHHHHHHHHHHH-------CC--CeEEEEEeC
Confidence            46889999999999999998865       24  356666554

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=90.84  E-value=0.3  Score=40.89  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=27.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|.|||.+||.+++....      +  .+++||+|-|.
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~------~--~~i~vvaINdp  118 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATS------R--DDIEVVAVNDP  118 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhh------c--CCcEEEEecCC
Confidence            799999999999999998553      2  24789999873

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=90.68  E-value=0.28  Score=38.73  Aligned_cols=32  Identities=22%  Similarity=0.607  Sum_probs=25.8

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|+|||.|++|+.++..+.+.+        ++++++|+|
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~--------~~elvaV~d   33 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSE--------HLEMVAMVG   33 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCC--------CcEEEEEEe
Confidence            68999999999998877776522        478888887

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=90.56  E-value=0.27  Score=39.97  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|-|||-+||.++|.+.++      .  +++||+|-|
T Consensus         3 ~kv~INGfGRIGR~v~R~~~~~------~--~~~ivaiNd   34 (342)
T PTZ00353          3 ITVGINGFGPVGKAVLFASLTD------P--LVTVVAVND   34 (342)
T ss_pred             eEEEEECCChHHHHHHHHHHhc------C--CcEEEEecC
Confidence            6899999999999999986642      1  489999987

>PRK11579 putative oxidoreductase; Provisional

Probab=90.48  E-value=0.3  Score=38.03  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             eeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|.+|+. .++.+.+.      .  +++++||+|.+
T Consensus         4 ~irvgiiG~G~i~~~~~~~~~~~~------~--~~~l~av~d~~   39 (346)
T PRK11579          4 KIRVGLIGYGYASKTFHAPLIAGT------P--GLELAAVSSSD   39 (346)
T ss_pred             cceEEEECCCHHHHHHHHHHHhhC------C--CCEEEEEECCC
Confidence            489999999999974 34443321      1  37999999975

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=90.32  E-value=0.17  Score=37.70  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|.++++.+.+
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~   42 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAA   42 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHH
Confidence            4566789999999999999999865

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.19  E-value=0.14  Score=37.68  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.0

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+.+
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~   42 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAG   42 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHH
Confidence            4567789999999999999998876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=89.89  E-value=0.42  Score=38.75  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=27.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|=|||-|||.+++.+.++      .+-+++||+|-|
T Consensus         2 ~ki~INGfGRIGR~~~R~~~~~------~~~~~~vvaind   35 (337)
T PRK07403          2 IRVAINGFGRIGRNFLRCWLGR------ENSQLELVAIND   35 (337)
T ss_pred             eEEEEEccChHHHHHHHHHHhc------cCCCeEEEEecC
Confidence            5889999999999999986652      123599999977

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=89.69  E-value=0.4  Score=38.04  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=25.7

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|+|+|. |.||+.+++++.+. +       +.+++++++.
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~-p-------~~elv~v~~~   36 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNH-P-------EVEIVAVTSR   36 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcC-C-------CceEEEEECc
Confidence            68999997 99999999999742 1       3567777763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.49  E-value=0.15  Score=37.97  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.1

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+.+
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~   49 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALAR   49 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHH
Confidence            4677899999999999999999865

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=89.28  E-value=0.24  Score=37.60  Aligned_cols=25  Identities=8%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+..+|.+||+|++|+++++.+.++
T Consensus         1 ~~~mkI~~IG~G~mG~aia~~l~~~   25 (279)
T PRK07679          1 MSIQNISFLGAGSIAEAIIGGLLHA   25 (279)
T ss_pred             CCCCEEEEECccHHHHHHHHHHHHC
Confidence            3344689999999999999988754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.01  E-value=0.33  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |..|..-+|.|||+|.+|..++..+.+
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~   27 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRR   27 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHh
Confidence            566766789999999999999998865

>PRK08328 hypothetical protein; Provisional

Probab=88.86  E-value=0.17  Score=38.00  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|.++++.+.+
T Consensus        24 ~L~~~~VlIiG~GGlGs~ia~~La~   48 (231)
T PRK08328         24 KLKKAKVAVVGVGGLGSPVAYYLAA   48 (231)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHH
Confidence            3455689999999999999988865

>PRK06153 hypothetical protein; Provisional

Probab=88.61  E-value=0.27  Score=40.81  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+.-+|+|+||||+|..+++++++
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR  197 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAK  197 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHH
Confidence            355689999999999999999887

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=88.58  E-value=0.68  Score=37.26  Aligned_cols=33  Identities=33%  Similarity=0.578  Sum_probs=26.8

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      +|.|-|||-+||.+++.+.++      .+-+++||+|-|
T Consensus         1 ~i~INGfGRIGr~~~r~~~~~------~~~~~~ivaind   33 (327)
T TIGR01534         1 KVGINGFGRIGRLVLRAILEK------QGLDLEVVAIND   33 (327)
T ss_pred             CEEEEccChHHHHHHHHHHhc------cCCceEEEEEec
Confidence            589999999999999987652      123689999988

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=88.57  E-value=0.19  Score=37.17  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|+.+++.+.+
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~   42 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLAR   42 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHH
Confidence            4567789999999999999998865

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=88.15  E-value=0.32  Score=36.79  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.3

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++++|.+||+|+.|.++++-+.+.
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~   25 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENS   25 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC
Confidence            334589999999999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=88.08  E-value=0.53  Score=36.21  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=22.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+.++|+|||-|-.|.+++-.+.++
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~   25 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRL   25 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhc
Confidence            7889999999999999999888764

>PRK08013 oxidoreductase; Provisional

Probab=87.85  E-value=0.6  Score=36.74  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|+|.|.+|.+++-.+.+
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~   24 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQG   24 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhh
Confidence            677899999999999999877654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=87.73  E-value=0.36  Score=35.54  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=20.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+--++.|+|+|+||+.+++.+.+
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~   49 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLE   49 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH
Confidence            444568999999999999998765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.55  E-value=0.44  Score=34.33  Aligned_cols=20  Identities=20%  Similarity=0.456  Sum_probs=18.2

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|++|..+++.+.+
T Consensus         1 ~VlViG~GglGs~ia~~La~   20 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR   20 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH
Confidence            58999999999999999876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=87.53  E-value=0.65  Score=36.45  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=25.0

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |...+|+|+|.|.+|.+++-.+.       ++|+++.|+
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~-------~~G~~v~vi   33 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALK-------ESDLRIAVI   33 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHH-------hCCCEEEEE
Confidence            66789999999999999997654       357665544

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=87.15  E-value=1.3  Score=37.85  Aligned_cols=41  Identities=27%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ..-+|+|-|||-+||.++|.+.++.    ..|=+++||||.+.++
T Consensus       126 ~~~~V~InGFGRIGR~v~R~~~~~~----~~~~~l~lvAIn~~~n  166 (477)
T PRK08289        126 EPRDVVLYGFGRIGRLLARLLIEKT----GGGNGLRLRAIVVRKG  166 (477)
T ss_pred             CCceEEEECCCHHHHHHHHHHHhcc----CCCCCeEEEEEecCCC
Confidence            4568999999999999999976511    1245799999976443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=87.00  E-value=0.39  Score=34.34  Aligned_cols=35  Identities=23%  Similarity=0.454  Sum_probs=25.4

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      -.|.|+|+|.||+++++.+..         +..+|++...+...
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~---------fG~~V~~~d~~~~~   71 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKA---------FGMRVIGYDRSPKP   71 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHH---------TT-EEEEEESSCHH
T ss_pred             CEEEEEEEcCCcCeEeeeeec---------CCceeEEecccCCh
Confidence            467999999999999987643         33577777766543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=86.86  E-value=0.38  Score=35.36  Aligned_cols=24  Identities=21%  Similarity=0.606  Sum_probs=20.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++.-+|+++|+|++|.++++.+..
T Consensus        17 L~~s~VlviG~gglGsevak~L~~   40 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVL   40 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHH
Confidence            456789999999999999998865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=86.53  E-value=0.29  Score=38.63  Aligned_cols=27  Identities=26%  Similarity=0.577  Sum_probs=22.8

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |.+|+.-+|+|+|+|++|.+.++.|..
T Consensus        14 q~kL~~s~VLIvG~gGLG~EiaKnLal   40 (286)
T cd01491          14 MKKLQKSNVLISGLGGLGVEIAKNLIL   40 (286)
T ss_pred             HHHHhcCcEEEEcCCHHHHHHHHHHHH
Confidence            346778899999999999999987753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=86.45  E-value=0.42  Score=36.31  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+.+
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~   45 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAA   45 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHH
Confidence            3466789999999999999998875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=86.40  E-value=0.6  Score=37.17  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=25.3

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|+|+|. |.||+.+++++.+. +       .++++++++|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h-P-------~~el~~l~~s~   35 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH-P-------EVEITYLVSSR   35 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-C-------CceEEEEeccc
Confidence            47899999 99999999999842 1       24566665554

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06184 hypothetical protein; Provisional

Probab=86.10  E-value=0.83  Score=37.19  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=25.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |+..+|+|||.|.+|..++-.+.+       +|+++.|+
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~-------~Gi~v~vi   32 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELAR-------RGVSFRLI   32 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-------CCCcEEEE
Confidence            678899999999999999977654       46665544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.05  E-value=0.87  Score=35.56  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.0

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|+|-|.+|.+++-.+.+
T Consensus         1 ~~~~dv~IvGgG~aGl~~A~~L~~   24 (384)
T PRK08849          1 MNKYDIAVVGGGMVGAATALGFAK   24 (384)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHh
Confidence            667899999999999999987754

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=86.04  E-value=0.33  Score=39.27  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=21.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+..
T Consensus        39 ~L~~~~VlviG~GGlGs~va~~La~   63 (392)
T PRK07878         39 RLKNARVLVIGAGGLGSPTLLYLAA   63 (392)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHH
Confidence            4567899999999999999998865

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=86.02  E-value=0.88  Score=29.55  Aligned_cols=43  Identities=28%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceeccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASD   55 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d   55 (95)
                      |..+++|+|.|+.|++++....      ..+|  +++++++|...-.+...
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~------~~~g--~~i~~~~dv~~~~~G~~   44 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGF------SMRG--FGIVAVFDVDPEKIGKE   44 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHH------HHHC--ECEEEEEEECTTTTTSE
T ss_pred             CCCeEEEECCCCcHHHHHHhHH------HHcC--CCCEEEEEcCCCccCcE
Confidence            4568999999999999983322      2234  56668887655554433

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=85.86  E-value=0.6  Score=38.26  Aligned_cols=44  Identities=20%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVF   57 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~   57 (95)
                      .+++++-|+|+||.+.++-+.++++        +.+||.-|++.....+|+.
T Consensus         2 ~~~vvqyGtG~vGv~air~l~akpe--------~elvgawv~s~ak~Gkdlg   45 (350)
T COG3804           2 SLRVVQYGTGSVGVAAIRGLLAKPE--------LELVGAWVHSAAKSGKDLG   45 (350)
T ss_pred             CceeEEeccchHHHHHHHHHHcCCC--------CceEEEEecCcccccccHH
Confidence            5789999999999988877665543        6789999998888777643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=85.81  E-value=0.98  Score=34.83  Aligned_cols=24  Identities=13%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.|+|.|.||..++-.+.+
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~   26 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLAR   26 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHH
Confidence            344578999999999999998876

>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=85.71  E-value=3.6  Score=31.58  Aligned_cols=59  Identities=24%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhc--CCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANL--GVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~--Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      -+|++.++|-|=  -.|.|+. -++++++  ++++|+|-|.|--.+- ..+.+|.||++++.-++
T Consensus        35 PDVVlA~aGd~p--T~E~lAA-~~lLr~~~P~lkiRvVNVvDLm~L~-~~~~hPhglsd~~Fd~l   95 (203)
T PF09363_consen   35 PDVVLACAGDVP--TLEVLAA-ASLLREHFPELKIRVVNVVDLMKLQ-PPSEHPHGLSDEEFDAL   95 (203)
T ss_dssp             -SEEEEEESHHH--HHHHHHH-HHHHHHT--T--EEEEEESBGGGGS--TTT-TTS--HHHHHHH
T ss_pred             CCEEEEecCchh--hHHHHHH-HHHHHHhccCceEEEEEEeEccccC-CCCCCCCcCCHHHHHHh
Confidence            478999999874  3455555 4456665  9999999999953333 23567999999998877

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>PRK06185 hypothetical protein; Provisional

Probab=85.55  E-value=1.1  Score=34.82  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |.+....+|+|||-|.+|.+++-.+.+
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~   27 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLAR   27 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHh
Confidence            666778999999999999999877653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=85.42  E-value=0.45  Score=37.82  Aligned_cols=25  Identities=28%  Similarity=0.525  Sum_probs=21.3

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +.+.-.|+++|.|+||+-.++.+++
T Consensus        27 kl~~~~V~VvGiGGVGSw~veALaR   51 (263)
T COG1179          27 KLKQAHVCVVGIGGVGSWAVEALAR   51 (263)
T ss_pred             HHhhCcEEEEecCchhHHHHHHHHH
Confidence            3456689999999999999998876

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=85.32  E-value=1.9  Score=35.63  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=38.2

Q ss_pred             eCEEEEeeccccHHHHHHHHh--hhH--------HHHhc-CC---eEEEEEEEcCCcceecccCCCCCCCHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS--CRS--------LHANL-GV---HLRVVGVSDSKSLVVASDVFTKEFNDNLLS   67 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~--~~~--------~~~k~-Gi---~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll   67 (95)
                      |+|+|+|.||+.++|++=|..  +.+        .+.+. |.   |+.+|+-.|     +|+.  .=|.|+.+++
T Consensus         1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafD-----Vd~~--KVGkdlseai   68 (351)
T TIGR03450         1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFD-----VDAK--KVGFDLSDAI   68 (351)
T ss_pred             CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEe-----cccc--ccCccHHHHH
Confidence            689999999999999997754  221        12222 44   899999888     5333  6677777654

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=85.27  E-value=1.1  Score=36.20  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=26.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|.|||.+|+.+++.+.++      .  +++++++-|
T Consensus         3 ikigInG~GRiGr~v~r~~~~~------~--~~~ivaind   34 (334)
T PRK08955          3 IKVGINGFGRIGRLALRAAWDW------P--ELEFVQIND   34 (334)
T ss_pred             eEEEEECcCHHHHHHHHHHHhC------C--CcEEEEecC
Confidence            7899999999999999997652      1  488898877

>PLN02602 lactate dehydrogenase

Probab=85.20  E-value=0.57  Score=37.78  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|+|||.|+||.+++-.+..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~   58 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILT   58 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHh
Confidence            699999999999999998775

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=85.12  E-value=0.55  Score=37.52  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+.+
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~   45 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVR   45 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHH
Confidence            4567789999999999999998764

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=85.00  E-value=1.8  Score=34.33  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=36.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeE----EEEEEEcCCcceecc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHL----RVVGVSDSKSLVVAS   54 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~l----rVvgVaDSk~~l~~~   54 (95)
                      .++..+|+++|.|.-|-+.+++|...   +.+.|+..    +=+-+.||+|++.+.
T Consensus        22 ~l~d~~iv~~GAGsAg~gia~ll~~~---~~~~G~~~eeA~~~i~~vD~~Gll~~~   74 (279)
T cd05312          22 PLSDQRILFLGAGSAGIGIADLIVSA---MVREGLSEEEARKKIWLVDSKGLLTKD   74 (279)
T ss_pred             ChhhcEEEEECcCHHHHHHHHHHHHH---HHHcCCChhhccCeEEEEcCCCeEeCC
Confidence            34567899999999999999999763   23456632    233677999999854

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=84.77  E-value=1.1  Score=34.71  Aligned_cols=25  Identities=12%  Similarity=0.167  Sum_probs=21.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .|+..+|+|||-|-+|.+++-.+.+
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~   28 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALAR   28 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhc
Confidence            3778899999999999999977653

>PRK08223 hypothetical protein; Validated

Probab=84.73  E-value=0.42  Score=38.00  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=20.3

Q ss_pred             cceeeCEEEEeeccccHHHHHHHH
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~   26 (95)
                      +++.-+|+|+|+|++|...++.++
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA   47 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLA   47 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHH
Confidence            456778999999999999887664

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=84.54  E-value=0.61  Score=37.23  Aligned_cols=25  Identities=16%  Similarity=0.445  Sum_probs=21.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+.+
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~   45 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVR   45 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHH
Confidence            3556689999999999999998875

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=84.50  E-value=1.2  Score=35.63  Aligned_cols=39  Identities=15%  Similarity=0.304  Sum_probs=31.2

Q ss_pred             eeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422            6 KIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV   52 (95)
Q Consensus         6 ~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~   52 (95)
                      .++|+|+| -|.||++|++++.+..        +++++.++.|++.-+
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp--------~~~l~~~~s~~~~~~   41 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRS--------DIELLSIPEAKRKDA   41 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCC--------CeEEEEEecCCCCcc
Confidence            36789999 7999999999988754        578888887765433

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=84.45  E-value=1.3  Score=30.40  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             EEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            9 SVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         9 v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+|+|- |.||+.+++++.++.         .+|++++.+..
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~---------~~V~~~~R~~~   33 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG---------HEVTALVRSPS   33 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT---------SEEEEEESSGG
T ss_pred             eEEECCCChHHHHHHHHHHHCC---------CEEEEEecCch
Confidence            689995 999999999998754         46666766644

...

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=84.31  E-value=1.6  Score=30.54  Aligned_cols=20  Identities=15%  Similarity=0.434  Sum_probs=15.6

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|..|+++++.+.+
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~   22 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAK   22 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHH
T ss_pred             EEEEEchHHHHHHHHHHHHh
Confidence            45999999999999999865

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=84.28  E-value=0.61  Score=35.40  Aligned_cols=24  Identities=29%  Similarity=0.484  Sum_probs=20.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+.-+|+|+|+|++|..+++.+..
T Consensus        30 L~~~~VliiG~GglGs~va~~La~   53 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAA   53 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHH
Confidence            355689999999999999998865

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=84.11  E-value=0.77  Score=35.08  Aligned_cols=20  Identities=35%  Similarity=0.780  Sum_probs=18.2

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|++|.++++.+..
T Consensus         1 kVlvvG~GGlG~eilk~La~   20 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLAL   20 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHH
Confidence            58999999999999999875

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=84.08  E-value=0.78  Score=36.36  Aligned_cols=20  Identities=30%  Similarity=0.723  Sum_probs=18.1

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|++|.++++.++.
T Consensus         1 kVlVVGaGGlG~eilknLal   20 (291)
T cd01488           1 KILVIGAGGLGCELLKNLAL   20 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHH
Confidence            58999999999999998865

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=84.05  E-value=0.85  Score=29.48  Aligned_cols=20  Identities=25%  Similarity=0.655  Sum_probs=17.2

Q ss_pred             EEEEeeccccHHHHHHHHhh
Q 034422            9 SVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         9 v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+|+|+|.+|+.+++.+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~   20 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG   20 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT
T ss_pred             eEEEcCCHHHHHHHHHHHhC
Confidence            68999999999999999883

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=83.75  E-value=0.98  Score=34.73  Aligned_cols=20  Identities=20%  Similarity=0.523  Sum_probs=17.6

Q ss_pred             EEEEeeccccHHHHHHHHhh
Q 034422            9 SVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         9 v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +.|+|.|++|.+|++.+.+.
T Consensus         4 ~~i~GtGniG~alA~~~a~a   23 (211)
T COG2085           4 IAIIGTGNIGSALALRLAKA   23 (211)
T ss_pred             EEEeccChHHHHHHHHHHhC
Confidence            49999999999999988763

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=83.67  E-value=1.4  Score=36.56  Aligned_cols=34  Identities=29%  Similarity=0.481  Sum_probs=24.7

Q ss_pred             CEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEE-cCC
Q 034422            8 PSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS-DSK   48 (95)
Q Consensus         8 ~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa-DSk   48 (95)
                      +|+|+| .|.||++-++.+.+.++       .++|+|++ |++
T Consensus         3 ~VaILGsTGSIG~~tL~vi~~~p~-------~f~VvaLaa~~n   38 (385)
T PRK05447          3 RITILGSTGSIGTQTLDVIRRNPD-------RFRVVALSAGKN   38 (385)
T ss_pred             eEEEEcCChHHHHHHHHHHHhCcc-------ccEEEEEEcCCC
Confidence            469999 99999999999876433       25666666 443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.64  E-value=0.49  Score=37.79  Aligned_cols=25  Identities=24%  Similarity=0.462  Sum_probs=21.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|+.+++.+.+
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~  156 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAA  156 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHH
Confidence            4567789999999999999998854

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=83.35  E-value=0.67  Score=34.11  Aligned_cols=25  Identities=24%  Similarity=0.533  Sum_probs=21.1

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+++|+|++|.++++.+..
T Consensus        18 ~L~~s~VlIiG~gglG~evak~La~   42 (197)
T cd01492          18 RLRSARILLIGLKGLGAEIAKNLVL   42 (197)
T ss_pred             HHHhCcEEEEcCCHHHHHHHHHHHH
Confidence            3466789999999999999998865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=83.31  E-value=1.1  Score=34.14  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=20.8

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |..|++  |.+||.|.+|.+++..+..
T Consensus         1 ~~~~~~--V~vIG~G~mG~~iA~~l~~   25 (295)
T PLN02545          1 MAEIKK--VGVVGAGQMGSGIAQLAAA   25 (295)
T ss_pred             CCCcCE--EEEECCCHHHHHHHHHHHh
Confidence            556664  6999999999999998765

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=83.15  E-value=0.51  Score=37.74  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+..
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~   49 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAG   49 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHH
Confidence            3566789999999999999988764

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.14  E-value=1  Score=31.63  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      |..|+.-+++|.| .|++|+++++++.+
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~   28 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLAR   28 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHH
Confidence            6666666788887 59999999999875

>PRK07411 hypothetical protein; Validated

Probab=82.98  E-value=0.73  Score=37.37  Aligned_cols=25  Identities=32%  Similarity=0.581  Sum_probs=21.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|..+++.+..
T Consensus        35 ~L~~~~VlivG~GGlG~~va~~La~   59 (390)
T PRK07411         35 RLKAASVLCIGTGGLGSPLLLYLAA   59 (390)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHH
Confidence            4566789999999999999988764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=82.80  E-value=0.84  Score=31.83  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.5

Q ss_pred             eCEEEEee-ccccHHHHHHHHhh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      .||.|+|. |+||++++-.+..+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~   23 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQ   23 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHhC
Confidence            37899999 99999999988875

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=82.67  E-value=1.6  Score=32.61  Aligned_cols=20  Identities=10%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|++|+++++-+.+
T Consensus         2 ~IgiIG~G~mG~aia~~L~~   21 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLT   21 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHh
Confidence            58999999999999998764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=82.51  E-value=0.9  Score=33.79  Aligned_cols=21  Identities=10%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|.+||+|++|+.+++.+.+.
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~   24 (267)
T PRK11880          4 KIGFIGGGNMASAIIGGLLAS   24 (267)
T ss_pred             EEEEEechHHHHHHHHHHHhC
Confidence            579999999999999988653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=82.27  E-value=1.4  Score=27.84  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCR   29 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~   29 (95)
                      ..-++.++|+|++|+..++.+.+..
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~   46 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEG   46 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC
Confidence            3456899999999999999987753

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=82.12  E-value=2.2  Score=32.08  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceec
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVA   53 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~   53 (95)
                      .+.-+++++|.|+.|++.++++.+       .|+.-+=+-|.|+++.+..
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~-------~G~~~~~i~ivdr~gl~~~   65 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLA-------AGAKPENIVVVDSKGVIYE   65 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHH-------cCcCcceEEEEeCCCcccc
Confidence            344578999999999999999964       2543235678899887763

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=82.12  E-value=1.8  Score=33.02  Aligned_cols=25  Identities=12%  Similarity=0.214  Sum_probs=21.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+.++|+|||-|-+|.+.+-++.++
T Consensus         1 ~~~~dv~IIGgGi~G~s~A~~L~~~   25 (376)
T PRK11259          1 TMRYDVIVIGLGSMGSAAGYYLARR   25 (376)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHC
Confidence            5668999999999999999777663

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=81.86  E-value=1.1  Score=35.85  Aligned_cols=19  Identities=37%  Similarity=0.877  Sum_probs=17.4

Q ss_pred             CEEEEeeccccHHHHHHHH
Q 034422            8 PSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~   26 (95)
                      +|+|+|+|++|.++++.+.
T Consensus         1 kVlIVGaGGlG~EiaKnLa   19 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLV   19 (312)
T ss_pred             CEEEECCCHHHHHHHHHHH
Confidence            5899999999999999886

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=81.67  E-value=1.8  Score=35.68  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=26.5

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |++....+|+|||.|.+|..++-.+.+       +|+++.|+
T Consensus        18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~-------~G~~v~vi   52 (547)
T PRK08132         18 ADDPARHPVVVVGAGPVGLALAIDLAQ-------QGVPVVLL   52 (547)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHh-------CCCcEEEE
Confidence            345577899999999999999987654       46665544

>PLN00198 anthocyanidin reductase; Provisional

Probab=81.60  E-value=2.2  Score=32.46  Aligned_cols=22  Identities=14%  Similarity=0.301  Sum_probs=18.4

Q ss_pred             eCEEEEe-eccccHHHHHHHHhh
Q 034422            7 IPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      -+|+|.| .|.||+.|++.+.++
T Consensus        10 ~~vlItG~~GfIG~~l~~~L~~~   32 (338)
T PLN00198         10 KTACVIGGTGFLASLLIKLLLQK   32 (338)
T ss_pred             CeEEEECCchHHHHHHHHHHHHC
Confidence            3488998 899999999998763

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=81.44  E-value=0.95  Score=35.89  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.0

Q ss_pred             ceeeCEEEEe-eccccHHHHHHHHh
Q 034422            4 LKKIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      |..++|+|+| .|.+|++|++.+.+
T Consensus         1 ~~~~~V~I~GatG~iG~~l~~~L~~   25 (349)
T PRK08664          1 MMKLKVGILGATGMVGQRFVQLLAN   25 (349)
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHc
Confidence            4568999998 99999999998884

>PRK09126 hypothetical protein; Provisional

Probab=81.11  E-value=1.9  Score=33.26  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |...+|+|||-|..|.+++..+.+
T Consensus         1 ~~~~dviIvGgG~aGl~~A~~L~~   24 (392)
T PRK09126          1 MMHSDIVVVGAGPAGLSFARSLAG   24 (392)
T ss_pred             CCcccEEEECcCHHHHHHHHHHHh
Confidence            557899999999999999887654

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=80.98  E-value=1.2  Score=37.39  Aligned_cols=20  Identities=30%  Similarity=0.620  Sum_probs=18.2

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|++|.++++.++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal   20 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFAL   20 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHH
Confidence            58999999999999998876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PLN02256 arogenate dehydrogenase

Probab=80.39  E-value=1.2  Score=34.96  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+..+|.+||+|.+|+.+++.+.+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~   57 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVK   57 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHh
Confidence            4566779999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	1e-06

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* Length = 358

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 5  KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDN 64
          K +   ++G G VG   L  +++ +S      +   +V +++++  +++ D        +
Sbjct: 3  KVVNVAVIGAGVVGSAFLDQLLAMKS-----TITYNLVLLAEAERSLISKDFSPLNVGSD 57

Query: 65 LLSEICRLKAGHSSLSTLIGGFGGNPLIL 93
            + +         L  LI     +P  +
Sbjct: 58 WKAALAASTTKTLPLDDLIAHLKTSPKPV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.06
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	98.77
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	98.74
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	98.68
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	98.65
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	98.61
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	98.59
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	98.49
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	98.47
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	98.47
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	98.46
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	98.41
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	98.4
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	98.33
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	98.3
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	98.26
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.91
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.64
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	97.57
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.4
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.1
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.01
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.85
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.8
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.77
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.74
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.71
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.55
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.48
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.44
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.43
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.33
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.32
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.31
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.3
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.27
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.25
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.2
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.11
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.1
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.08
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.08
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.07
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.03
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	95.9
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	95.88
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.88
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.83
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.8
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.79
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	95.77
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.76
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.66
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.66
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.62
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.61
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.6
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.53
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.52
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.51
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.47
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.36
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	95.33
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.27
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.14
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.06
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.04
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.03
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	94.97
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	94.95
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	94.84
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	94.8
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	94.77
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	94.76
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.56
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.54
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	94.39
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	94.32
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	94.19
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.18
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	94.13
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.1
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	94.07
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.07
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	93.99
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	93.98
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.95
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	93.88
4had_A	350	Probable oxidoreductase protein; structural genomi	93.81
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	93.69
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	93.64
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	93.61
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	93.44
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	93.44
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.31
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	93.28
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	93.17
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	93.15
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	93.08
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	92.99
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	92.98
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.93
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	92.86
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.8
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	92.79
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	92.77
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.58
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	92.56
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	91.85
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.84
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	91.72
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	91.72
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.71
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	91.58
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	91.5
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	91.29
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	91.18
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	91.06
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	90.9
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	90.81
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	90.81
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.8
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	90.71
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	90.69
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	90.66
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.64
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	90.64
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	90.33
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.28
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	90.06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.8
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	89.51
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.31
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.05
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	89.03
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	88.92
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	88.69
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	88.61
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	88.37
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	88.36
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	88.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	88.3
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	88.23
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	88.21
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	88.15
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.02
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	87.98
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.94
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.92
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.82
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	87.75
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	87.75
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	87.7
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	87.07
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	86.97
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	86.92
4hb9_A	412	Similarities with probable monooxygenase; flavin,	86.87
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	86.85
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	86.73
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	86.69
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	86.68
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	86.49
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	86.35
3tl2_A	315	Malate dehydrogenase; center for structural genomi	86.16
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	86.12
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	85.84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.84
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	85.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	85.77
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	85.53
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	85.47
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	85.42
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	85.35
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	85.31
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	85.25
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	85.1
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	85.02
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	85.0
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.97
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	84.65
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	84.57
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	84.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	84.38
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	84.27
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	84.27
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	83.74
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	83.63
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	83.54
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	83.43
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	83.42
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	83.4
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	83.38
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	83.19
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	83.18
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	83.12
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	83.12
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	83.1
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	83.04
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	82.99
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	82.85
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	82.84
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	82.83
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	82.75
4ezb_A	317	Uncharacterized conserved protein; structural geno	82.7
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	82.66
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	82.58
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	82.35
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	82.23
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	82.12
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	82.07
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	82.0
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	81.99
2cul_A	232	Glucose-inhibited division protein A-related PROT	81.96
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	81.66
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	81.65
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	81.37
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	81.32
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	81.24
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	82.16
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	81.18
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	81.13
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	81.1
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	80.99
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	80.97
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	80.94
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	80.85
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	80.84
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	80.8
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	80.79
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	80.68
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	80.61
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	80.55
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	80.36
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	80.34
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	80.3
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	80.28
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	80.18
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	80.08
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	80.05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	80.01

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.06  E-value=2.1e-10  Score=89.16  Aligned_cols=59  Identities=31%  Similarity=0.450  Sum_probs=49.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      |+.++|+|+|||+||++++++|.+ ++. +++|.+++||||+||+...++    ++ +|++.+.+.
T Consensus         2 Mk~irVgIiG~G~VG~~~~~~L~~-~~~-~~~g~~l~lvaVad~~~~~~~----~~-idl~~~~~~   60 (325)
T 3ing_A            2 MKEIRIILMGTGNVGLNVLRIIDA-SNR-RRSAFSIKVVGVSDSRSYASG----RN-LDISSIISN   60 (325)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-HHH-HC--CEEEEEEEECSSBEEEC----SS-CCHHHHHHH
T ss_pred             CceEEEEEEcCcHHHHHHHHHHHh-chh-hccCCCEEEEEEEecChhhcc----cc-cCHHHHHHH
Confidence            899999999999999999999998 444 778999999999999999883    44 888877665

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=98.77  E-value=8.7e-09  Score=83.16  Aligned_cols=66  Identities=30%  Similarity=0.352  Sum_probs=54.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      ++..+|+|.|||+||+.+++++.++      +|  .+||+|+||+|.++  |  |+|||++.|.+.   |++.++++.++
T Consensus       207 l~g~~vaVqG~GnVG~~~a~~L~e~------~G--akvVavsD~~G~i~--d--p~Gld~~~l~~~---~~~~g~l~~y~  271 (415)
T 2tmg_A          207 PKKATVAVQGFGNVGQFAALLISQE------LG--SKVVAVSDSRGGIY--N--PEGFDVEELIRY---KKEHGTVVTYP  271 (415)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHT------TC--CEEEEEECSSCEEE--C--TTCCCHHHHHHH---HHHSSCSTTCS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHh------cC--CEEEEEEeCCCeEE--C--CCCCCHHHHHHH---HHhhCCcccCC
Confidence            4556789999999999999888761      24  89999999999988  6  999999999998   66667777665


Q ss_pred             C
Q 034422           84 G   84 (95)
Q Consensus        84 ~   84 (95)
                      .
T Consensus       272 ~  272 (415)
T 2tmg_A          272 K  272 (415)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=98.74  E-value=1.2e-08  Score=83.11  Aligned_cols=64  Identities=19%  Similarity=0.218  Sum_probs=54.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      ++-.+|+|.|||+||+.+++.+.+.       |  .+||+|+||+|.++  |  |+|||++.|.++   |++.++++.++
T Consensus       233 l~g~~vaVqGfGnVG~~~a~~L~e~-------G--akvVavsD~~G~i~--d--p~Gld~~~l~~~---~~~~g~i~~y~  296 (440)
T 3aog_A          233 VEGARVAIQGFGNVGNAAARAFHDH-------G--ARVVAVQDHTGTVY--N--EAGIDPYDLLRH---VQEFGGVRGYP  296 (440)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT-------T--CEEEEEECSSCEEE--C--TTCCCHHHHHHH---HHHTSSSTTCT
T ss_pred             ccCCEEEEeccCHHHHHHHHHHHHC-------C--CEEEEEEcCCcEEE--C--CCCCCHHHHHHH---HHhcCCcccCC
Confidence            4556789999999999999888663       3  88999999999988  6  999999999999   66667777665

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=98.68  E-value=2.3e-08  Score=81.16  Aligned_cols=64  Identities=19%  Similarity=0.380  Sum_probs=55.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      ++-.+|+|-|||+||+..++.+.+       .|  .+||+|+||+|.++  |  |+|||.+.|.+.   |++.++++.++
T Consensus       219 l~g~~vaVqG~GnVG~~aa~~l~e-------~G--akVVavsD~~G~iy--d--~~GlD~~~l~~~---~~~~g~i~~~~  282 (424)
T 3k92_A          219 LQNARIIIQGFGNAGSFLAKFMHD-------AG--AKVIGISDANGGLY--N--PDGLDIPYLLDK---RDSFGMVTNLF  282 (424)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHH-------HT--CEEEEEECSSCEEE--C--TTCCCHHHHHHH---CCSSSCCGGGC
T ss_pred             cccCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCCcEE--C--CCCCCHHHHHHH---HHHhCCCCCCC
Confidence            445678999999999999998865       24  78999999999999  6  999999999988   88888887775

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=98.65  E-value=1.3e-08  Score=82.20  Aligned_cols=64  Identities=16%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC-----cceecccCCCCCCCHHHHHHHHhhhcCCCC
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK-----SLVVASDVFTKEFNDNLLSEICRLKAGHSS   78 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk-----~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~   78 (95)
                      ++-.+|+|.|||+||+.+++.+.+       +|  .+||+|+||+     |.++  |  |+|||.++|.++   |++.++
T Consensus       210 l~g~~vaVqG~GnVG~~~a~~L~~-------~G--akvVavsD~~~~~~~G~i~--d--~~Gld~~~l~~~---~~~~g~  273 (421)
T 2yfq_A          210 MEDAKIAVQGFGNVGTFTVKNIER-------QG--GKVCAIAEWDRNEGNYALY--N--ENGIDFKELLAY---KEANKT  273 (421)
T ss_dssp             GGGSCEEEECCSHHHHHHHHHHHH-------TT--CCEEECCBCCSSSCSBCCB--C--SSCCCHHHHHHH---HHHHCC
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHH-------CC--CEEEEEEecCCCccceEEE--C--CCCCCHHHHHHH---HHhcCC
Confidence            556789999999999999988865       34  8899999999     9998  6  999999999998   655577


Q ss_pred             ccccc
Q 034422           79 LSTLI   83 (95)
Q Consensus        79 l~~l~   83 (95)
                      ++.++
T Consensus       274 i~~~~  278 (421)
T 2yfq_A          274 LIGFP  278 (421)
T ss_dssp             -----
T ss_pred             cccCC
Confidence            76664

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=98.61  E-value=5.8e-08  Score=75.38  Aligned_cols=46  Identities=26%  Similarity=0.354  Sum_probs=42.7

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV   52 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~   52 (95)
                      ++|+|+|+|+||+.++++|.++++.++++|.+++|++|+|++....
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~   48 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSIS   48 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEE
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhc
Confidence            7899999999999999999998886677799999999999998887

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=98.59  E-value=7.5e-08  Score=74.34  Aligned_cols=48  Identities=35%  Similarity=0.426  Sum_probs=43.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV   52 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~   52 (95)
                      |+.++|.|+|||+||+.++++|.++++. ++.|.+++|++|+|++....
T Consensus         4 M~~irvgIiG~G~VG~~~~~~l~~~~~~-~~~g~~~~vvaV~d~~~~~~   51 (331)
T 3c8m_A            4 MKTINLSIFGLGNVGLNLLRIIRSFNEE-NRLGLKFNVVFVADSLHSYY   51 (331)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHHH-CSSSEEEEEEEEECSSCEEE
T ss_pred             CcEEeEEEEecCHHHHHHHHHHHhChHH-HhcCCcEEEEEEEECChHHh
Confidence            7889999999999999999999987777 66799999999999988776

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=98.49  E-value=1.2e-07  Score=76.69  Aligned_cols=62  Identities=26%  Similarity=0.317  Sum_probs=51.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLST   81 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~   81 (95)
                      ++-.+|+|.|+||||+..++.+.+       .|  .+||+|+||+|.++  |  |+|||.+.+.++   |++.++++.
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~-------~G--akVVavsD~~G~i~--d--p~Gld~~~l~~~---~~~~g~v~~  277 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAER-------LG--MRVVAVATSMGGMY--A--PEGLDVAEVLSA---YEATGSLPR  277 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-------TT--CEEEEEEETTEEEE--C--TTCCCHHHHHHH---HHHHSSCSC
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHH-------CC--CEEEEEEcCCCeEE--C--CCCCCHHHHHHH---HHhhCCcce
Confidence            344568999999999999988865       24  89999999999998  6  999999999998   555566653

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=98.47  E-value=5.8e-08  Score=78.55  Aligned_cols=63  Identities=21%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCC--cccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSS--LSTL   82 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~--l~~l   82 (95)
                      +--+++|.|+|+||+..++.+.+       .|  .+||+|+||+|.++  |  |+|||++.|.+.   |++.++  ++.+
T Consensus       209 ~gk~vaVqG~GnVG~~aa~~L~e-------~G--akVVavsD~~G~i~--d--p~GlD~~~l~~~---k~~~g~~~v~~y  272 (421)
T 1v9l_A          209 EGKTVAIQGMGNVGRWTAYWLEK-------MG--AKVIAVSDINGVAY--R--KEGLNVELIQKN---KGLTGPALVELF  272 (421)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT-------TT--CEEEEEECSSCEEE--C--TTCCCTHHHHHT---TTSCHHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-------CC--CEEEEEECCCcEEE--C--CCCCCHHHHHHH---HHhhCCcccccc
Confidence            34568999999999999987765       23  89999999999999  6  999999999988   666666  5555


Q ss_pred             c
Q 034422           83 I   83 (95)
Q Consensus        83 ~   83 (95)
                      +
T Consensus       273 ~  273 (421)
T 1v9l_A          273 T  273 (421)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=98.47  E-value=1.3e-07  Score=73.81  Aligned_cols=45  Identities=22%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|.|+|+|+||+.+++++.++++.+.+.|.+++|++|+|++
T Consensus         1 Mk~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~   45 (332)
T 2ejw_A            1 MEALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRD   45 (332)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSC
T ss_pred             CCeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECC
Confidence            788999999999999999999999877665589999999999987

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=98.46  E-value=1.7e-07  Score=77.68  Aligned_cols=64  Identities=17%  Similarity=0.322  Sum_probs=53.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      ++--+|+|-||||||+..++.+.+       .|  .+||+|+||+|.++  |  |+|||.+.|.+.   |++.+.+..++
T Consensus       242 l~g~tVaVQG~GNVG~~aa~~L~e-------~G--akVVavsDs~G~iy--d--~~Gid~~~l~~~---k~~~g~i~~~~  305 (501)
T 3mw9_A          242 FGDKTFVVQGFGNVGLHSMRYLHR-------FG--AKCITVGESDGSIW--N--PDGIDPKELEDF---KLQHGTILGFP  305 (501)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHH-------TT--CEEEEEECSSCEEE--C--TTCCCHHHHHHH---HHHHSSSTTCT
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEcCCceEE--C--CCCCCHHHHHHH---HHhcCCeeccc
Confidence            344568999999999999998875       35  69999999999999  6  999999999988   66667776654

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=98.41  E-value=3.7e-07  Score=71.52  Aligned_cols=46  Identities=15%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceec
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVA   53 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~   53 (95)
                      +++.++|+|+|+|.||+.++++|.+++     +|++++|++|+||+...++
T Consensus         1 ~~k~i~vgIiG~G~VG~~~~~~l~~~~-----~g~~~~vvaV~d~~~~~~~   46 (358)
T 1ebf_A            1 STKVVNVAVIGAGVVGSAFLDQLLAMK-----STITYNLVLLAEAERSLIS   46 (358)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHCC-----CSSEEEEEEEECSSBEEEC
T ss_pred             CCceEEEEEEecCHHHHHHHHHHHhcC-----CCCCEEEEEEEECChhhhc
Confidence            357799999999999999999998765     6889999999999877663

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=98.40  E-value=4.2e-07  Score=74.69  Aligned_cols=70  Identities=23%  Similarity=0.371  Sum_probs=56.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCC-CCcccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGH-SSLSTL   82 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~-g~l~~l   82 (95)
                      ++--+|+|-|+|+||+..++.+.+       .|  -+||+|+||+|.++  |  |+|||.+.+-++.+.|++. ++++.+
T Consensus       250 l~g~~vaVqG~GnVG~~~a~~L~~-------~G--akvVavsD~~G~i~--d--p~Gid~edl~~l~~~k~~~~g~v~~~  316 (470)
T 2bma_A          250 VEKQTAVVSGSGNVALYCVQKLLH-------LN--VKVLTLSDSNGYVY--E--PNGFTHENLEFLIDLKEEKKGRIKEY  316 (470)
T ss_dssp             GGGCEEEEECSSHHHHHHHHHHHH-------TT--CEECEEEETTEEEE--C--SSCCCHHHHHHHHHHHTTTTCCGGGG
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHH-------CC--CEEEEEEeCCceEE--C--CCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            344568999999999999998865       24  69999999999999  6  9999887777776668775 678877


Q ss_pred             cCCC
Q 034422           83 IGGF   86 (95)
Q Consensus        83 ~~~~   86 (95)
                      ...+
T Consensus       317 ~~~~  320 (470)
T 2bma_A          317 LNHS  320 (470)
T ss_dssp             GGTC
T ss_pred             Hhhc
Confidence            6544

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=98.33  E-value=5.3e-07  Score=73.88  Aligned_cols=68  Identities=21%  Similarity=0.375  Sum_probs=54.5

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC-CCCccccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG-HSSLSTLI   83 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~-~g~l~~l~   83 (95)
                      +-.+|+|-|+|+||+.+++.+.+       .|  -+||+|+||+|.++  |  |+|||.++|.++.+.|++ ++.++.+.
T Consensus       238 ~g~~VaVQG~GnVG~~aa~~L~e-------~G--akvVavsD~~G~iy--d--~~Gld~~~l~~~~~~k~~~~~~v~~~~  304 (456)
T 3r3j_A          238 ENKKCLVSGSGNVAQYLVEKLIE-------KG--AIVLTMSDSNGYIL--E--PNGFTKEQLNYIMDIKNNQRLRLKEYL  304 (456)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-------HT--CCBCCEECSSCEEE--C--TTCCCHHHHHHHHHHHHTSCCCGGGGG
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEECCCCcEE--C--CCCCCHHHHHHHHHHHHhcCcchhhhh
Confidence            44578999999999999988765       35  68999999999999  6  999999999987665664 45576664


Q ss_pred             CC
Q 034422           84 GG   85 (95)
Q Consensus        84 ~~   85 (95)
                      ..
T Consensus       305 ~~  306 (456)
T 3r3j_A          305 KY  306 (456)
T ss_dssp             GT
T ss_pred             hc
Confidence            33

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=98.30  E-value=5.3e-07  Score=72.99  Aligned_cols=47  Identities=26%  Similarity=0.266  Sum_probs=41.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHh-cCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHAN-LGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k-~Gi~lrVvgVaDSk~   49 (95)
                      -|++++|+|+|+|+||+.++++|.++++.+++ .|.+++|++|+|++.
T Consensus         7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~   54 (444)
T 3mtj_A            7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL   54 (444)
T ss_dssp             SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH
T ss_pred             hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH
Confidence            37899999999999999999999998886654 599999999999864

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=98.26  E-value=3.8e-07  Score=74.43  Aligned_cols=67  Identities=15%  Similarity=0.281  Sum_probs=50.7

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCC-CHHHHHHHHhhhcCC-CCcccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEF-NDNLLSEICRLKAGH-SSLSTL   82 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GL-d~~~ll~~~~~K~~~-g~l~~l   82 (95)
                      +--+|+|.|+|+||+.+++.+.+       .|  .+||+|+||+|.++  |  |+|| |++.+-++.+.|+.. ++++.+
T Consensus       229 ~g~~v~VqG~GnVG~~~a~~L~~-------~G--akvVavsD~~G~i~--d--p~Gi~d~edi~~l~~~k~~~~g~v~~y  295 (449)
T 1bgv_A          229 VGKTVALAGFGNVAWGAAKKLAE-------LG--AKAVTLSGPDGYIY--D--PEGITTEEKINYMLEMRASGRNKVQDY  295 (449)
T ss_dssp             TTCEEEECCSSHHHHHHHHHHHH-------HT--CEEEEEEETTEEEE--C--TTCSCSHHHHHHHHHHHHHCCCCTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEeCCceEE--C--CCcCCCHHHHHHHHHHHhccCCChhhc
Confidence            44568999999999999977754       34  69999999999999  6  9999 555444444447665 577666


Q ss_pred             cC
Q 034422           83 IG   84 (95)
Q Consensus        83 ~~   84 (95)
                      +.
T Consensus       296 ~~  297 (449)
T 1bgv_A          296 AD  297 (449)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.91  E-value=1.8e-05  Score=64.68  Aligned_cols=69  Identities=25%  Similarity=0.456  Sum_probs=53.7

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcC-CCCcccccC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAG-HSSLSTLIG   84 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~-~g~l~~l~~   84 (95)
                      --+|+|=|+|+||..+++.+.+       .|  -+||+|+||+|.++  |  |+|||.+.|.++.+.|+. .+.++.+..
T Consensus       235 Gk~vaVQG~GnVG~~aa~~L~e-------~G--akvVavsD~~G~i~--d--~~Gid~e~l~~l~e~k~~~~g~v~~~~~  301 (450)
T 4fcc_A          235 GMRVSVSGSGNVAQYAIEKAME-------FG--ARVITASDSSGTVV--D--ESGFTKEKLARLIEIKSSRDGRVADYAK  301 (450)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-------TT--CEEEEEEETTEEEE--C--TTCCCHHHHHHHHHHHTSTTCCHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHh-------cC--CeEEEEecCCceEE--e--CCCCCHHHHHHHHHHhcccCCccccccc
Confidence            3468999999999999988865       35  68999999999999  6  999999999888765543 345555544


Q ss_pred             CCC
Q 034422           85 GFG   87 (95)
Q Consensus        85 ~~~   87 (95)
                      .+|
T Consensus       302 ~~g  304 (450)
T 4fcc_A          302 EFG  304 (450)
T ss_dssp             HHT
T ss_pred             cCC
Confidence            443

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.64  E-value=2.5e-05  Score=58.25  Aligned_cols=48  Identities=15%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |.+||.|+|.|||+|.+|+.-++.+..-.+.+.... ..+||||+|.+.
T Consensus        20 ~~~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~-~~~lvav~d~~~   67 (393)
T 4fb5_A           20 FQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVE-RPRLVHLAEANA   67 (393)
T ss_dssp             ----CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSC-CCEEEEEECC--
T ss_pred             ccCCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCC-CcEEEEEECCCH
Confidence            467999999999999999977766655444433321 478999999643

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=97.57  E-value=4.9e-05  Score=60.94  Aligned_cols=55  Identities=24%  Similarity=0.299  Sum_probs=44.5

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICR   71 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~   71 (95)
                      +--.|.|+|+|+||+.+++.+..        .+..+|++++|+++...  |  ++|+|+++|++.++
T Consensus       211 ~gktvgI~G~G~VG~~vA~~l~~--------~~G~kVv~~sD~~g~~~--~--~~gvdl~~L~~~~d  265 (419)
T 1gtm_A          211 KGKTIAIQGYGNAGYYLAKIMSE--------DFGMKVVAVSDSKGGIY--N--PDGLNADEVLKWKN  265 (419)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH--------TTCCEEEEEECSSCEEE--E--EEEECHHHHHHHHH
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHH--------hcCCEEEEEeCCCcccc--C--ccCCCHHHHHHHHH
Confidence            34568999999999999886643        13579999999998776  5  78999999998854

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.40  E-value=0.00011  Score=55.38  Aligned_cols=41  Identities=27%  Similarity=0.509  Sum_probs=29.3

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |..|+.++|.|||+|++|+.+++.+.+..        +++++||+|.+.
T Consensus         4 M~~M~~irv~IIG~G~iG~~~~~~l~~~~--------~~elvav~d~~~   44 (304)
T 3bio_A            4 MTDDKKIRAAIVGYGNIGRYALQALREAP--------DFEIAGIVRRNP   44 (304)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHCT--------TEEEEEEECC--
T ss_pred             CccCCCCEEEEECChHHHHHHHHHHhcCC--------CCEEEEEEcCCH
Confidence            56678899999999999999888775421        388999998643

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.10  E-value=0.00045  Score=51.33  Aligned_cols=45  Identities=16%  Similarity=0.116  Sum_probs=33.3

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .|+.|+|.|||+|.+|+.-++.+.+-. .........+|+||+|++
T Consensus         3 ~M~klrvgiIG~G~ig~~h~~~~~~~~-~~~~~~~~~~l~av~d~~   47 (390)
T 4h3v_A            3 AMTNLGIGLIGYAFMGAAHSQAWRSAP-RFFDLPLHPDLNVLCGRD   47 (390)
T ss_dssp             -CCEEEEEEECHHHHHHHHHHHHHHHH-HHSCCSSEEEEEEEECSS
T ss_pred             CCCcCcEEEEcCCHHHHHHHHHHHhCc-cccccccCceEEEEEcCC
Confidence            699999999999999998777665532 223334467899999964

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.01  E-value=0.00037  Score=52.83  Aligned_cols=37  Identities=22%  Similarity=0.489  Sum_probs=31.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|.|+|+|++|+.+++.+.+..        ++++++|+|++
T Consensus         1 M~~irV~IiG~G~mG~~~~~~l~~~~--------~~elvav~d~~   37 (320)
T 1f06_A            1 MTNIRVAIVGYGNLGRSVEKLIAKQP--------DMDLVGIFSRR   37 (320)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCS--------SEEEEEEEESS
T ss_pred             CCCCEEEEEeecHHHHHHHHHHhcCC--------CCEEEEEEcCC
Confidence            77889999999999999988776531        48999999976

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.85  E-value=0.0011  Score=50.87  Aligned_cols=47  Identities=13%  Similarity=0.227  Sum_probs=33.1

Q ss_pred             Ccce-eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            2 ATLK-KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         2 ~~mk-~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .+|+ +|+|.|||+|.+|+..++.+.+.....-...-+.+||||+|.+
T Consensus        21 ~~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~   68 (412)
T 4gqa_A           21 QSMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQD   68 (412)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSS
T ss_pred             ccccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCC
Confidence            3574 6999999999999988887766444433333468999999964

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.80  E-value=0.0014  Score=49.33  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |.+|+.++|.|||+|++|+..++.+.+..       =.+++++|+|.+
T Consensus         8 m~~~~~~rvgiiG~G~~g~~~~~~l~~~~-------~~~~lvav~d~~   48 (354)
T 3q2i_A            8 PITDRKIRFALVGCGRIANNHFGALEKHA-------DRAELIDVCDID   48 (354)
T ss_dssp             CCCSSCEEEEEECCSTTHHHHHHHHHHTT-------TTEEEEEEECSS
T ss_pred             cCCCCcceEEEEcCcHHHHHHHHHHHhCC-------CCeEEEEEEcCC
Confidence            44567899999999999998887766532       148899999964

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.77  E-value=0.001  Score=50.24  Aligned_cols=41  Identities=20%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CcceeeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            2 ATLKKIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      .+|+.++|.|||+|.+|+ ..++.+.+..        +++|+||+|.+..
T Consensus        21 ~~M~~~rvgiiG~G~ig~~~~~~~l~~~~--------~~~lvav~d~~~~   62 (330)
T 4ew6_A           21 QSMSPINLAIVGVGKIVRDQHLPSIAKNA--------NFKLVATASRHGT   62 (330)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHHHHCT--------TEEEEEEECSSCC
T ss_pred             ccCCCceEEEEecCHHHHHHHHHHHHhCC--------CeEEEEEEeCChh
Confidence            468999999999999998 6777776421        4899999997643

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.74  E-value=0.0011  Score=50.39  Aligned_cols=38  Identities=34%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +|+.++|.|||+|.+|+..++.+.+..        +++|++|+|.+
T Consensus         2 ~m~~~~vgiiG~G~~g~~~~~~l~~~~--------~~~l~av~d~~   39 (359)
T 3e18_A            2 SLKKYQLVIVGYGGMGSYHVTLASAAD--------NLEVHGVFDIL   39 (359)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHTST--------TEEEEEEECSS
T ss_pred             CCCcCcEEEECcCHHHHHHHHHHHhCC--------CcEEEEEEcCC
Confidence            488999999999999998887665421        48899999964

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.71  E-value=0.0009  Score=50.75  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=28.8

Q ss_pred             CCcceeeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            1 MATLKKIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +++|+.++|.|||+|.+|+ ..++.+.+..        +++|++|+|.+
T Consensus        22 ~~~m~~~rigiIG~G~~g~~~~~~~l~~~~--------~~~l~av~d~~   62 (350)
T 3rc1_A           22 PANANPIRVGVIGCADIAWRRALPALEAEP--------LTEVTAIASRR   62 (350)
T ss_dssp             ----CCEEEEEESCCHHHHHTHHHHHHHCT--------TEEEEEEEESS
T ss_pred             CCCCCceEEEEEcCcHHHHHHHHHHHHhCC--------CeEEEEEEcCC
Confidence            4679999999999999998 6777665421        47889999864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.55  E-value=0.0017  Score=48.68  Aligned_cols=38  Identities=16%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +|+.++|.|||+|.+|+..++.+.+.      .  +++|++|+|.+
T Consensus         2 ~m~~~~igiiG~G~~g~~~~~~l~~~------~--~~~l~av~d~~   39 (330)
T 3e9m_A            2 SLDKIRYGIMSTAQIVPRFVAGLRES------A--QAEVRGIASRR   39 (330)
T ss_dssp             -CCCEEEEECSCCTTHHHHHHHHHHS------S--SEEEEEEBCSS
T ss_pred             CCCeEEEEEECchHHHHHHHHHHHhC------C--CcEEEEEEeCC
Confidence            47889999999999999988877542      1  48899999964

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.48  E-value=0.0027  Score=47.39  Aligned_cols=40  Identities=20%  Similarity=0.250  Sum_probs=29.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      +|+.++|.|||+|.+|+.+++.+.+.       + +.++++|+|.+..
T Consensus         2 ~m~~~rigiiG~G~ig~~~~~~l~~~-------~-~~~~~av~d~~~~   41 (329)
T 3evn_A            2 SLSKVRYGVVSTAKVAPRFIEGVRLA-------G-NGEVVAVSSRTLE   41 (329)
T ss_dssp             ---CEEEEEEBCCTTHHHHHHHHHHH-------C-SEEEEEEECSCSS
T ss_pred             CCCceEEEEEechHHHHHHHHHHHhC-------C-CcEEEEEEcCCHH
Confidence            47889999999999999988776532       1 4889999997543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.44  E-value=0.0028  Score=47.85  Aligned_cols=40  Identities=25%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.|+.++|.|||+|++|+.+++.+.+..        ++++++|+|++.
T Consensus         2 ~~~~~~~vgiiG~G~ig~~~~~~l~~~~--------~~~lv~v~d~~~   41 (362)
T 1ydw_A            2 ATETQIRIGVMGCADIARKVSRAIHLAP--------NATISGVASRSL   41 (362)
T ss_dssp             ----CEEEEEESCCTTHHHHHHHHHHCT--------TEEEEEEECSSH
T ss_pred             CCCCceEEEEECchHHHHHHHHHHhhCC--------CcEEEEEEcCCH
Confidence            4577899999999999999888765321        378999999653

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.43  E-value=0.0023  Score=48.64  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=30.0

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ..|+.++|.|||+|.+|+..++.+.++.+       .+++++|+|.+
T Consensus        19 ~~m~~~rvgiIG~G~~g~~~~~~l~~~~~-------~~~lvav~d~~   58 (357)
T 3ec7_A           19 FQGMTLKAGIVGIGMIGSDHLRRLANTVS-------GVEVVAVCDIV   58 (357)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHTCT-------TEEEEEEECSS
T ss_pred             cCCCeeeEEEECCcHHHHHHHHHHHhhCC-------CcEEEEEEeCC
Confidence            36888999999999999998887763211       38899999964

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.33  E-value=0.0027  Score=48.53  Aligned_cols=37  Identities=16%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +.++|.|+|+|+||+.+++.+.++.+       .+++++|+|.+
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~-------~~elvav~d~~   39 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAK-------YLEMGAMVGID   39 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCS-------SEEEEEEECSC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCc-------CeEEEEEEeCC
Confidence            56899999999999999998764221       47899999964

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.32  E-value=0.0021  Score=48.66  Aligned_cols=40  Identities=20%  Similarity=0.489  Sum_probs=32.1

Q ss_pred             CcceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            2 ATLKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         2 ~~mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.|+.++|+|+| +|.+|+.+++.+.+..        ++++||+.|++.
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~--------~~eLv~~~d~~~   43 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAP--------DATLVGALDRTG   43 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCT--------TEEEEEEBCCTT
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEEecC
Confidence            458889999999 8999999999997643        489999999764

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.31  E-value=0.0023  Score=47.59  Aligned_cols=43  Identities=21%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ..|+.++|.|||+|.+|+..++.+.+..     ..-++++++|+|.+.
T Consensus         3 ~~~~~~rvgiIG~G~iG~~~~~~l~~~~-----~~~~~~lvav~d~~~   45 (294)
T 1lc0_A            3 TNSGKFGVVVVGVGRAGSVRLRDLKDPR-----SAAFLNLIGFVSRRE   45 (294)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHTSHH-----HHTTEEEEEEECSSC
T ss_pred             CCCCcceEEEEEEcHHHHHHHHHHhccc-----cCCCEEEEEEECchH
Confidence            4567899999999999999888775421     122489999999753

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.30  E-value=0.0032  Score=46.59  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|++|+. .++.+.+.      .  ++++++|+|.+.
T Consensus         2 ~m~~~~vgiiG~G~~g~~~~~~~l~~~------~--~~~lvav~d~~~   41 (319)
T 1tlt_A            2 SLKKLRIGVVGLGGIAQKAWLPVLAAA------S--DWTLQGAWSPTR   41 (319)
T ss_dssp             ---CEEEEEECCSTHHHHTHHHHHHSC------S--SEEEEEEECSSC
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHHhC------C--CeEEEEEECCCH
Confidence            488899999999999996 77766442      1  378899998643

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.27  E-value=0.0027  Score=49.38  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .++|.|+|||.+|+.+++.+.+. +       +++||+|.|+
T Consensus         3 ~ikVgI~G~GrIGr~l~R~l~~~-p-------~vevvaI~d~   36 (337)
T 3e5r_O            3 KIKIGINGFGRIGRLVARVALQS-E-------DVELVAVNDP   36 (337)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-S-------SEEEEEEECS
T ss_pred             ceEEEEECcCHHHHHHHHHHhCC-C-------CeEEEEEECC
Confidence            47899999999999999998753 1       4899999984

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.25  E-value=0.0032  Score=48.99  Aligned_cols=33  Identities=18%  Similarity=0.462  Sum_probs=28.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|||.||+.+++.+.++      .  +++||+|+|+
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~------~--~~evvaV~d~   35 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQ------D--DMEVIGVTKT   35 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS------S--SEEEEEEEES
T ss_pred             eEEEEECCCHHHHHHHHHHHhC------C--CceEEEEecC
Confidence            7899999999999999998653      1  4899999995

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.20  E-value=0.0035  Score=47.95  Aligned_cols=34  Identities=15%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.|+|+|.+|+.+++.+.+..        +++|++|+|++
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~--------~~elvav~d~~   36 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQD--------DMELIGITKTK   36 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCT--------TEEEEEEEESS
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCC--------CCEEEEEEcCC
Confidence            78999999999999999987531        37999999964

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.11  E-value=0.0037  Score=47.00  Aligned_cols=38  Identities=11%  Similarity=0.169  Sum_probs=30.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+.++|.|||+|.+|+..++.+.+..        +++|++|+|.+.
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~--------~~~lvav~d~~~   40 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSE--------KLKLVTCYSRTE   40 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCS--------SEEEEEEECSSH
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCC--------CcEEEEEECCCH
Confidence            56789999999999998887775421        488999999643

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.10  E-value=0.0034  Score=48.56  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .++|.|+|||.+|+.+++.+.+.      .  +++||+|.|.
T Consensus         3 ~ikVgI~G~G~iGr~~~R~l~~~------~--~vevvaI~d~   36 (335)
T 1u8f_O            3 KVKVGVNGFGRIGRLVTRAAFNS------G--KVDIVAINDP   36 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH------C--SSEEEEEECS
T ss_pred             ceEEEEEccCHHHHHHHHHHHcC------C--CcEEEEecCC
Confidence            48999999999999999998753      1  4789999983

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.08  E-value=0.004  Score=48.46  Aligned_cols=37  Identities=22%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             ceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|+|+| +|.||+.+++++.+. +       ++++++|+|++
T Consensus        14 M~~~kV~IiGAtG~iG~~llr~L~~~-p-------~~elvai~~~~   51 (359)
T 1xyg_A           14 EKDIRIGLLGASGYTGAEIVRLLANH-P-------HFQVTLMTADR   51 (359)
T ss_dssp             -CCEEEEEECCSSHHHHHHHHHHHTC-S-------SEEEEEEBCST
T ss_pred             ccCcEEEEECcCCHHHHHHHHHHHcC-C-------CcEEEEEeCch
Confidence            5678999999 999999999998753 2       47899998864

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.08  E-value=0.0047  Score=46.01  Aligned_cols=37  Identities=19%  Similarity=0.435  Sum_probs=28.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+.++|+|+|+|.+|+.+++.+.+..        + ++|++.|.+.
T Consensus         1 M~MmkI~ViGaGrMG~~i~~~l~~~~--------~-eLva~~d~~~   37 (243)
T 3qy9_A            1 MASMKILLIGYGAMNQRVARLAEEKG--------H-EIVGVIENTP   37 (243)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT--------C-EEEEEECSSC
T ss_pred             CCceEEEEECcCHHHHHHHHHHHhCC--------C-EEEEEEecCc
Confidence            44578999999999999999886521        4 7899988753

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.07  E-value=0.0059  Score=45.33  Aligned_cols=40  Identities=23%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      .|+.++|.|||+|++|+..++.+.++.     .  .+++++|+|.+.
T Consensus         5 ~~~~~~v~iiG~G~ig~~~~~~l~~~~-----~--~~~~vav~d~~~   44 (346)
T 3cea_A            5 TRKPLRAAIIGLGRLGERHARHLVNKI-----Q--GVKLVAACALDS   44 (346)
T ss_dssp             CCCCEEEEEECCSTTHHHHHHHHHHTC-----S--SEEEEEEECSCH
T ss_pred             CCCcceEEEEcCCHHHHHHHHHHHhcC-----C--CcEEEEEecCCH
Confidence            467799999999999999888765211     1  478899998643

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.03  E-value=0.0051  Score=46.73  Aligned_cols=39  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|.+|+. .++.+.+..        +++|++|+|.+.
T Consensus         2 ~M~~~rigiIG~G~~g~~~~~~~l~~~~--------~~~l~av~d~~~   41 (359)
T 3m2t_A            2 SLSLIKVGLVGIGAQMQENLLPSLLQMQ--------DIRIVAACDSDL   41 (359)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHTCT--------TEEEEEEECSSH
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHHhCC--------CcEEEEEEcCCH
Confidence            488899999999999985 777765421        489999999753

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=95.90  E-value=0.0055  Score=45.36  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +++.++|.|||+|++|+.+++.+.+..        ++++++|+|.+.
T Consensus         7 ~~~~~~igiIG~G~~g~~~~~~l~~~~--------~~~~v~v~d~~~   45 (315)
T 3c1a_A            7 NNSPVRLALIGAGRWGKNYIRTIAGLP--------GAALVRLASSNP   45 (315)
T ss_dssp             --CCEEEEEEECTTTTTTHHHHHHHCT--------TEEEEEEEESCH
T ss_pred             CCCcceEEEECCcHHHHHHHHHHHhCC--------CcEEEEEEeCCH
Confidence            456789999999999999888776521        378899999754

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=95.88  E-value=0.0067  Score=48.55  Aligned_cols=28  Identities=21%  Similarity=0.348  Sum_probs=23.0

Q ss_pred             CCcceeeCEEEEee-ccccHHHHHHHHhhhH
Q 034422            1 MATLKKIPSVLMGC-GGVGRQLLQHIVSCRS   30 (95)
Q Consensus         1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~~~   30 (95)
                      |..|  ++|.|+|+ |.||++.+++|.+.++
T Consensus         1 m~~m--~rI~ILGsTGSIG~~~l~vi~~~p~   29 (388)
T 1r0k_A            1 MSQP--RTVTVLGATGSIGHSTLDLIERNLD   29 (388)
T ss_dssp             -CCC--EEEEEETTTSHHHHHHHHHHHHTGG
T ss_pred             CCCc--eEEEEECCCeEeHHHHHHHHHhCcC
Confidence            5556  66799999 9999999999988654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.88  E-value=0.0076  Score=44.99  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|++|+..++.+.+..        +++|++|+|.+
T Consensus         4 ~~rvgiiG~G~~g~~~~~~l~~~~--------~~~l~av~d~~   38 (344)
T 3euw_A            4 TLRIALFGAGRIGHVHAANIAANP--------DLELVVIADPF   38 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCT--------TEEEEEEECSS
T ss_pred             ceEEEEECCcHHHHHHHHHHHhCC--------CcEEEEEECCC
Confidence            478999999999999887765521        37899999864

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.83  E-value=0.0064  Score=47.52  Aligned_cols=40  Identities=15%  Similarity=0.267  Sum_probs=29.4

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.|+.++|.|||+|.+|+..++.+.+.      .  .++|++|+|.+.
T Consensus        16 ~~~~~~rvgiIG~G~~g~~h~~~l~~~------~--~~~lvav~d~~~   55 (444)
T 2ixa_A           16 FNPKKVRIAFIAVGLRGQTHVENMARR------D--DVEIVAFADPDP   55 (444)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHTC------T--TEEEEEEECSCH
T ss_pred             CCCCCceEEEEecCHHHHHHHHHHHhC------C--CcEEEEEEeCCH
Confidence            357889999999999999877666431      1  489999999643

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.80  E-value=0.0027  Score=47.67  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             ceeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+.++|+|+|+ |.+|+.+++.+.+.+      +  ++|+|++|...
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~------~--~elva~~d~~~   41 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALE------G--VQLGAALEREG   41 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHST------T--EECCCEECCTT
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCC------C--CEEEEEEecCc
Confidence            77899999999 999999999886532      2  68888888643

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.79  E-value=0.0051  Score=46.56  Aligned_cols=39  Identities=18%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|.+|+. .++.+.+.      .  +++|+||+|.+.
T Consensus         2 ~~~~~rvgiiG~G~~g~~~~~~~l~~~------~--~~~l~av~d~~~   41 (362)
T 3fhl_A            2 SLEIIKTGLAAFGMSGQVFHAPFISTN------P--HFELYKIVERSK   41 (362)
T ss_dssp             -CCCEEEEESCCSHHHHHTTHHHHHHC------T--TEEEEEEECSSC
T ss_pred             CCCceEEEEECCCHHHHHHHHHHHhhC------C--CeEEEEEEcCCH
Confidence            478899999999999986 55555431      1  389999999764

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=95.77  E-value=0.0049  Score=46.69  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=29.1

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|.+|+. .++.+.+.      .  +++|+||+|++.
T Consensus         2 ~m~~~rvgiiG~G~~g~~~~~~~l~~~------~--~~~l~av~d~~~   41 (358)
T 3gdo_A            2 SLDTIKVGILGYGLSGSVFHGPLLDVL------D--EYQISKIMTSRT   41 (358)
T ss_dssp             CTTCEEEEEECCSHHHHHTTHHHHTTC------T--TEEEEEEECSCH
T ss_pred             CCCcceEEEEccCHHHHHHHHHHHhhC------C--CeEEEEEEcCCH
Confidence            477899999999999987 55554321      1  388999999753

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.76  E-value=0.0045  Score=48.56  Aligned_cols=39  Identities=18%  Similarity=0.399  Sum_probs=30.7

Q ss_pred             CcceeeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            2 ATLKKIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ..|+.++|.|||+|.+|+ .+++.+.+..        +++|++|+|.+
T Consensus        79 ~~~~~irigiIG~G~~g~~~~~~~l~~~~--------~~~lvav~d~~  118 (433)
T 1h6d_A           79 PEDRRFGYAIVGLGKYALNQILPGFAGCQ--------HSRIEALVSGN  118 (433)
T ss_dssp             CCCCCEEEEEECCSHHHHHTHHHHTTTCS--------SEEEEEEECSC
T ss_pred             CCCCceEEEEECCcHHHHHHHHHHHhhCC--------CcEEEEEEcCC
Confidence            358899999999999997 7877664311        47899999964

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.66  E-value=0.0065  Score=46.85  Aligned_cols=37  Identities=32%  Similarity=0.478  Sum_probs=29.2

Q ss_pred             ceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|+|+| +|.||+.+++.+.+. +       +++|++|++|+
T Consensus         2 ~~~~kV~IiGAtG~iG~~llr~L~~~-p-------~~elvai~~s~   39 (350)
T 2ep5_A            2 ADKIKVSLLGSTGMVGQKMVKMLAKH-P-------YLELVKVSASP   39 (350)
T ss_dssp             CCCEEEEEESCSSHHHHHHHHHHTTC-S-------SEEEEEEECCG
T ss_pred             CCCcEEEEECcCCHHHHHHHHHHHhC-C-------CcEEEEEecCh
Confidence            4568999999 999999999988642 1       47899998543

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.66  E-value=0.0035  Score=46.17  Aligned_cols=38  Identities=18%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .|+.++|.|||+|++|+. .++.+.+.      .  ++++++|+|.+
T Consensus         3 ~M~~~~igiIG~G~~g~~~~~~~l~~~------~--~~~l~av~d~~   41 (308)
T 3uuw_A            3 AMKNIKMGMIGLGSIAQKAYLPILTKS------E--RFEFVGAFTPN   41 (308)
T ss_dssp             --CCCEEEEECCSHHHHHHTHHHHTSC------S--SSEEEEEECSC
T ss_pred             ccccCcEEEEecCHHHHHHHHHHHHhC------C--CeEEEEEECCC
Confidence            588899999999999996 77766432      1  37889999964

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.62  E-value=0.0097  Score=46.34  Aligned_cols=34  Identities=21%  Similarity=0.544  Sum_probs=28.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhh--hHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC--RSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~--~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|+|.||+.+++++.+.  ++       +++||+|.|.
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~~-------~~eivai~~~   38 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRRA-------EITVVAINEL   38 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGGG-------TEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCCC-------CEEEEEEeCC
Confidence            7899999999999999998751  22       4889999874

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.61  E-value=0.0064  Score=47.94  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=27.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      |+.++|.|+|||.||+.+++++.+. +       +++||+|.|
T Consensus        15 ~~~ikVgI~G~G~iGr~llR~l~~~-p-------~veivaind   49 (354)
T 3cps_A           15 YFQGTLGINGFGRIGRLVLRACMER-N-------DITVVAIND   49 (354)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHTC-S-------SCEEEEEEC
T ss_pred             CcceEEEEECCCHHHHHHHHHHHcC-C-------CeEEEEecC
Confidence            4558999999999999999998753 1       478899998

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.60  E-value=0.0093  Score=45.35  Aligned_cols=39  Identities=26%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             cceeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|.+|+. .++.+.+.      .  +++|+||+|++.
T Consensus         4 ~~~~~rvgiiG~G~~g~~~~~~~l~~~------~--~~~l~av~d~~~   43 (364)
T 3e82_A            4 SNNTINIALIGYGFVGKTFHAPLIRSV------P--GLNLAFVASRDE   43 (364)
T ss_dssp             ---CEEEEEECCSHHHHHTHHHHHHTS------T--TEEEEEEECSCH
T ss_pred             CCCcceEEEECCCHHHHHHHHHHHhhC------C--CeEEEEEEcCCH
Confidence            356799999999999987 55555331      1  379999999754

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.53  E-value=0.011  Score=46.11  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=28.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|||.||+.+++.+.++.      +=+++||+|.|.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~------~~~~evvaInd~   37 (339)
T 3b1j_A            3 IRVAINGFGRIGRNFLRCWFGRQ------NTDLEVVAINNT   37 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCS------CCSEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhcC------CCCeEEEEEecC
Confidence            78999999999999999987632      125889999874

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.52  E-value=0.011  Score=44.50  Aligned_cols=40  Identities=28%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             cc-eeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            3 TL-KKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         3 ~m-k~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      +| +.++|.|||+|.+|+. .++.+.+.      .  +++|+||+|++..
T Consensus         3 ~M~~~~rvgiiG~G~~g~~~~~~~~~~~------~--~~~l~av~d~~~~   44 (352)
T 3kux_A            3 AMADKIKVGLLGYGYASKTFHAPLIMGT------P--GLELAGVSSSDAS   44 (352)
T ss_dssp             TTTCCEEEEEECCSHHHHHTHHHHHHTS------T--TEEEEEEECSCHH
T ss_pred             cccCCceEEEECCCHHHHHHHHHHHhhC------C--CcEEEEEECCCHH
Confidence            45 5699999999999997 56655432      1  3799999997543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.51  E-value=0.012  Score=43.78  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=28.1

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|.+|+..++.+.+.      .  ++++++|+|.+
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~------~--~~~l~av~d~~   37 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGN------A--DARLVAVADAF   37 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC------T--TEEEEEEECSS
T ss_pred             ceEEEEECCCHHHHHHHHHHhhC------C--CcEEEEEECCC
Confidence            47899999999999988877552      1  37899999964

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.47  E-value=0.011  Score=48.10  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      .++.|+|.|||+|.+|+.+++++.+        .=+++|++|+|.+-
T Consensus        20 ~~k~IRVGIIGaG~iG~~~~~~l~~--------~~~veLvAV~D~~~   58 (446)
T 3upl_A           20 TGKPIRIGLIGAGEMGTDIVTQVAR--------MQGIEVGALSARRL   58 (446)
T ss_dssp             TTCCEEEEEECCSHHHHHHHHHHTT--------SSSEEEEEEECSST
T ss_pred             cCCceEEEEECChHHHHHHHHHHhh--------CCCcEEEEEEeCCH
Confidence            3578999999999999999987654        12589999999653

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.36  E-value=0.013  Score=46.74  Aligned_cols=35  Identities=26%  Similarity=0.512  Sum_probs=28.5

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|||.||+.+++++.++.      +=+++||+|.|.
T Consensus         3 ikVgInGfGrIGr~vlR~l~~~~------~~~veIVaInd~   37 (380)
T 2d2i_A            3 IRVAINGFGRIGRNFLRCWFGRQ------NTDLEVVAINNT   37 (380)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCS------SCSEEEEEEECS
T ss_pred             cEEEEECcCHHHHHHHHHHhcCC------CCCEEEEEEecC
Confidence            78999999999999999987532      125889999883

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=95.33  E-value=0.014  Score=43.65  Aligned_cols=36  Identities=22%  Similarity=0.436  Sum_probs=28.1

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|.+|+..++.+.++.+       ++++++|+|.+
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~-------~~~l~av~d~~   37 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLS-------GAEIVAVTDVN   37 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCS-------SEEEEEEECSS
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCC-------CcEEEEEEcCC
Confidence            3789999999999998887763211       48899999964

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.27  E-value=0.011  Score=47.15  Aligned_cols=42  Identities=14%  Similarity=0.216  Sum_probs=32.5

Q ss_pred             CCcceeeCEEEEee----ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            1 MATLKKIPSVLMGC----GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         1 ~~~mk~I~v~LiG~----G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |..|+.++|.|||+    |.+|+..++.+.+..+       .++||||+|.+.
T Consensus        34 ~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~-------~~~lvav~d~~~   79 (479)
T 2nvw_A           34 VPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSS-------QFQIVALYNPTL   79 (479)
T ss_dssp             SGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTT-------TEEEEEEECSCH
T ss_pred             CCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCC-------CeEEEEEEeCCH
Confidence            45688899999999    8889888887765311       478999999643

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.14  E-value=0.013  Score=45.21  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=28.3

Q ss_pred             eeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +.++|+|+| +|.||+.+++++.+. +       ++++++|++++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~-p-------~~elv~v~s~~   39 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSH-P-------YLEVKQVTSRR   39 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTC-T-------TEEEEEEBCST
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcC-C-------CcEEEEEECch
Confidence            357899999 899999999988753 1       46788888853

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.06  E-value=0.018  Score=44.44  Aligned_cols=34  Identities=21%  Similarity=0.556  Sum_probs=28.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.|+|+|.+|+.+++.+.+. +       +++|++|+|.+
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~-p-------~~elvav~d~~   35 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQ-P-------DMKLVGVAKTS   35 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-T-------TEEEEEEECSS
T ss_pred             eEEEEEecCHHHHHHHHHHHcC-C-------CCEEEEEEcCC
Confidence            6899999999999999998653 1       38899999964

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.04  E-value=0.014  Score=43.87  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=30.0

Q ss_pred             CCcceeeCEEEEeec-cccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            1 MATLKKIPSVLMGCG-GVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G-~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |-..+.++|.|||+| .+|+..++.+.+.       +=+++|++|+|.+
T Consensus        13 ~~~~~~irvgiIG~G~~~g~~~~~~l~~~-------~~~~~lvav~d~~   54 (340)
T 1zh8_A           13 MKPLRKIRLGIVGCGIAARELHLPALKNL-------SHLFEITAVTSRT   54 (340)
T ss_dssp             ---CCCEEEEEECCSHHHHHTHHHHHHTT-------TTTEEEEEEECSS
T ss_pred             cCCCCceeEEEEecCHHHHHHHHHHHHhC-------CCceEEEEEEcCC
Confidence            445678999999999 7998888776542       1248999999964

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.03  E-value=0.02  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.543  Sum_probs=28.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.|+|+|.||+.+++.+.+.+        ++++++|.|.+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~--------~~elvav~d~~   35 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQD--------DMKVIGVSKTR   35 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSS--------SEEEEEEEESS
T ss_pred             eEEEEEeECHHHHHHHHHHHcCC--------CcEEEEEEcCC
Confidence            67899999999999999986532        48999998854

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=94.97  E-value=0.021  Score=42.39  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             cceeeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            3 TLKKIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|+.++|.|||+|.+|. ..++.+       +..+  ++|++|+|.+.
T Consensus         1 ~M~~~rvgiiG~G~~~~~~~~~~l-------~~~~--~~lvav~d~~~   39 (336)
T 2p2s_A            1 GMKKIRFAAIGLAHNHIYDMCQQL-------IDAG--AELAGVFESDS   39 (336)
T ss_dssp             ---CCEEEEECCSSTHHHHHHHHH-------HHTT--CEEEEEECSCT
T ss_pred             CCCccEEEEECCChHHHHHhhhhh-------cCCC--cEEEEEeCCCH
Confidence            48899999999999985 444433       1223  78999999653

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=94.95  E-value=0.016  Score=43.35  Aligned_cols=34  Identities=15%  Similarity=0.268  Sum_probs=27.4

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.|||+|++|+..++.+.+..        ++++++|+|.+
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~--------~~~l~av~d~~   36 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMID--------DAILYAISDVR   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGST--------TEEEEEEECSC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCC--------CcEEEEEECCC
Confidence            78999999999999887765421        38999999964

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=94.84  E-value=0.015  Score=44.69  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=31.3

Q ss_pred             eeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            5 KKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         5 k~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.++|+++| +|.+|+.+++.+.+..        ++++||+.|++.
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~--------~~eLvg~vd~~~   57 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRK--------DVELCAVLVRKG   57 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCS--------SEEEEEEBCCTT
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCC--------CCEEEEEEecCC
Confidence            568999999 9999999999988643        589999999864

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=94.77  E-value=0.016  Score=43.18  Aligned_cols=37  Identities=11%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .+++.|||+|.+|+..++.+.+.      .+.+++|++|+|.+
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~------~~~~~~l~av~d~~   38 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTL------PRSEHQVVAVAARD   38 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTS------CTTTEEEEEEECSS
T ss_pred             ccEEEEECchHHHHHHHHHHHhC------CCCCeEEEEEEcCC
Confidence            37899999999999887766432      12368999999964

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=94.76  E-value=0.025  Score=43.89  Aligned_cols=33  Identities=21%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|.|||.+|+.+++++.+.        =+++||+|.|+
T Consensus         2 ikVgI~G~G~iG~~l~R~l~~~--------~~veiv~i~~~   34 (330)
T 1gad_O            2 IKVGINGFGRIGRIVFRAAQKR--------SDIEIVAINDL   34 (330)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC--------SSEEEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHcC--------CCeEEEEEcCC
Confidence            6899999999999999998763        15899999986

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.56  E-value=0.022  Score=44.60  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=30.2

Q ss_pred             ceeeCEEEEee----ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGC----GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~----G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      |+.++|.|||+    |.+|+..++.+.+..+       .++||+|+|.+.
T Consensus        18 m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~-------~~~lvav~d~~~   60 (438)
T 3btv_A           18 AAPIRVGFVGLNAAKGWAIKTHYPAILQLSS-------QFQITALYSPKI   60 (438)
T ss_dssp             -CCEEEEEESCCTTSSSTTTTHHHHHHHTTT-------TEEEEEEECSSH
T ss_pred             cCCCEEEEEcccCCCChHHHHHHHHHHhcCC-------CeEEEEEEeCCH
Confidence            46799999999    8999998888765311       389999999643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.54  E-value=0.018  Score=36.45  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |.+++.-+|+|+|+|.+|+.+++.+.+
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~   27 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHR   27 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHH
Confidence            455555568999999999999998865

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=94.39  E-value=0.036  Score=42.11  Aligned_cols=36  Identities=8%  Similarity=0.171  Sum_probs=25.0

Q ss_pred             ceeeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|.|||+|.++. .++..+.       ..  .++|+||+|.+
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~-------~~--~~~lvav~d~~   60 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLL-------RA--GARLAGFHEKD   60 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHH-------HT--TCEEEEEECSC
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhh-------cC--CcEEEEEEcCC
Confidence            5789999999999985 3444432       12  37899999964

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=94.32  E-value=0.023  Score=43.64  Aligned_cols=34  Identities=24%  Similarity=0.455  Sum_probs=27.4

Q ss_pred             eeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .++|+|+| +|.||+.+++.+.+.       . +++|+++.+|
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~-------p-~~ev~~i~~s   42 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADH-------P-MFELTALAAS   42 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-------S-SEEEEEEEEC
T ss_pred             cceEEEECcCCHHHHHHHHHHhcC-------C-CCEEEEEEcc
Confidence            37899999 999999999987642       1 4789999854

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=94.19  E-value=0.022  Score=42.87  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=26.2

Q ss_pred             eeCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|.+|+ ..++.+.+       . =+++|++|+|++
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~l~~-------~-~~~~l~av~d~~   37 (349)
T 3i23_A            2 TVKMGFIGFGKSANRYHLPYVMI-------R-ETLEVKTIFDLH   37 (349)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTT-------C-TTEEEEEEECTT
T ss_pred             eeEEEEEccCHHHHHHHHHHHhh-------C-CCeEEEEEECCC
Confidence            37899999999998 45554433       1 148999999976

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.18  E-value=0.014  Score=44.09  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=28.5

Q ss_pred             cceeeCEEEEe-eccccHH-HH----HHHHhhhHH-H-HhcCCeEEEEEEEcC
Q 034422            3 TLKKIPSVLMG-CGGVGRQ-LL----QHIVSCRSL-H-ANLGVHLRVVGVSDS   47 (95)
Q Consensus         3 ~mk~I~v~LiG-~G~VG~~-Ll----~~I~~~~~~-~-~k~Gi~lrVvgVaDS   47 (95)
                      +|++++|.||| +|.+|+. .+    +.+.+.... + ....+.+++ +|+|.
T Consensus         3 ~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~-av~~~   54 (383)
T 3oqb_A            3 TTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDP-ILVGR   54 (383)
T ss_dssp             CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEE-EEECS
T ss_pred             CCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceee-EEEcC
Confidence            78999999999 9999997 55    555442211 1 123344555 67765

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=94.13  E-value=0.028  Score=43.22  Aligned_cols=38  Identities=13%  Similarity=0.244  Sum_probs=28.4

Q ss_pred             eeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +.++|+|+| +|.||+.+++++.+..      .=+++++++++++
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~------~p~~elv~i~s~~   40 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQERE------FPVDELFLLASER   40 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTT------CCEEEEEEEECTT
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCC------CCCEEEEEEECCC
Confidence            457899999 9999999999886531      0146788887643

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.10  E-value=0.032  Score=43.33  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|+|.||+.++|++.+..      +=+++||+|.|.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~------~p~~eivain~~   35 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERK------NPDIEVVAINDL   35 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT------CTTCEEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCC------CCCeEEEEEEcC
Confidence            57899999999999999987631      014789999883

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=94.07  E-value=0.026  Score=43.93  Aligned_cols=31  Identities=26%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|.|||.||+.+++.+.++         ++.|++|.|
T Consensus         1 ikVgInG~G~IGr~vlr~l~~~---------~~evvaind   31 (331)
T 2g82_O            1 MKVGINGFGRIGRQVFRILHSR---------GVEVALIND   31 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH---------TCCEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC---------CCEEEEEec
Confidence            4789999999999999988642         467888887

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.07  E-value=0.026  Score=36.55  Aligned_cols=22  Identities=14%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .-+++++|+|.+|+++++.+.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~   27 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTA   27 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHH
Confidence            3468999999999999998876

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=93.99  E-value=0.038  Score=43.19  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=27.8

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++|.|+|||.||+.++|++.++.      .=+++||+|.|
T Consensus         2 ikVgInG~G~IGr~llR~l~~~~------~p~~eivaInd   35 (337)
T 1rm4_O            2 LKVAINGFGRIGRNFLRCWHGRK------DSPLDVVVIND   35 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCS------SCSEEEEEEEC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCC------CCCeEEEEEEc
Confidence            68999999999999999987631      12589999987

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=93.98  E-value=0.035  Score=44.20  Aligned_cols=33  Identities=18%  Similarity=0.427  Sum_probs=27.6

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .++|+|.|||.|||.+++.+.++         ++.||+|-|.
T Consensus        21 ~~kVaInGfGrIGr~vlr~l~e~---------~~~ivaIndl   53 (356)
T 3hja_A           21 SMKLAINGFGRIGRNVFKIAFER---------GIDIVAINDL   53 (356)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT---------TCEEEEEECS
T ss_pred             CeEEEEECCCHHHHHHHHHHHHC---------CCCEEEEeCC
Confidence            58999999999999999987753         4789999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.95  E-value=0.049  Score=35.99  Aligned_cols=24  Identities=8%  Similarity=0.058  Sum_probs=20.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+.-+++|+|+|.||+.+++.+.+
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~   24 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQ   24 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH
Confidence            555678999999999999998865

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=93.88  E-value=0.061  Score=41.19  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=28.9

Q ss_pred             cceeeCEEEEeecc---ccHHHHHHHHhhhHHHHhcCCeEEEEE-EEcCC
Q 034422            3 TLKKIPSVLMGCGG---VGRQLLQHIVSCRSLHANLGVHLRVVG-VSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~---VG~~Ll~~I~~~~~~~~k~Gi~lrVvg-VaDSk   48 (95)
                      .|+.++|.|||+|.   +|+..+..+...       + ++++++ |+|++
T Consensus         9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~-------~-~~~lva~v~d~~   50 (398)
T 3dty_A            9 IPQPIRWAMVGGGSQSQIGYIHRCAALRD-------N-TFVLVAGAFDID   50 (398)
T ss_dssp             SCSCEEEEEEECCTTCSSHHHHHHHHHGG-------G-SEEEEEEECCSS
T ss_pred             ccCcceEEEEcCCccchhHHHHHHHHhhC-------C-CeEEEEEEeCCC
Confidence            48899999999999   998777655321       1 378888 88864

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=93.81  E-value=0.031  Score=41.54  Aligned_cols=36  Identities=11%  Similarity=0.230  Sum_probs=25.9

Q ss_pred             eeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +.||+.|||+|.+|+. .+..+.+       .. +++|+||+|++
T Consensus        22 ~mirigiIG~G~ig~~~~~~~~~~-------~~-~~~lvav~d~~   58 (350)
T 4had_A           22 SMLRFGIISTAKIGRDNVVPAIQD-------AE-NCVVTAIASRD   58 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHH-------CS-SEEEEEEECSS
T ss_pred             CccEEEEEcChHHHHHHHHHHHHh-------CC-CeEEEEEECCC
Confidence            4489999999999975 3444432       21 48899999964

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=93.69  E-value=0.05  Score=42.20  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             cceeeCEEEEeecc---ccHHHHHHHHhhhHHHHhcCCeEEEEE-EEcCC
Q 034422            3 TLKKIPSVLMGCGG---VGRQLLQHIVSCRSLHANLGVHLRVVG-VSDSK   48 (95)
Q Consensus         3 ~mk~I~v~LiG~G~---VG~~Ll~~I~~~~~~~~k~Gi~lrVvg-VaDSk   48 (95)
                      .|+.++|.|||+|.   +|+..+..+..       .+ ++++|+ |+|++
T Consensus        34 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~-------~~-~~~lva~v~d~~   75 (417)
T 3v5n_A           34 RQKRIRLGMVGGGSGAFIGAVHRIAARL-------DD-HYELVAGALSST   75 (417)
T ss_dssp             -CCCEEEEEESCC--CHHHHHHHHHHHH-------TS-CEEEEEEECCSS
T ss_pred             cCCcceEEEEcCCCchHHHHHHHHHHhh-------CC-CcEEEEEEeCCC
Confidence            38899999999999   88876655432       11 378886 98864

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=93.64  E-value=0.043  Score=42.66  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=28.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|+|||.+|+.+++++.+.        =+++||+|.|.
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~--------~~veivain~~   34 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKN--------PDIEVVAVNDL   34 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTC--------TTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhCC--------CCeEEEEEeCC
Confidence            6899999999999999998653        15889999884

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=93.61  E-value=0.036  Score=43.67  Aligned_cols=33  Identities=21%  Similarity=0.421  Sum_probs=28.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|.|||-|||.+++.+.++ +       ++.||+|.|+
T Consensus         3 ikV~InGfGrIGr~v~r~l~~~-~-------~~evvaInd~   35 (342)
T 2ep7_A            3 IKVGINGFGRIGRSFFRASWGR-E-------EIEIVAINDL   35 (342)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTC-T-------TCEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHHhC-C-------CceEEEEecC
Confidence            6899999999999999988653 1       4899999984

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=93.44  E-value=0.075  Score=34.05  Aligned_cols=30  Identities=20%  Similarity=0.441  Sum_probs=23.7

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      +++|+|||-|..|..++..+.+       +|+++.|+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~-------~G~~V~v~   31 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA-------AGHQVHLF   31 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-------TTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-------CCCCEEEE
Confidence            3799999999999999987754       47665543

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=93.44  E-value=0.04  Score=41.09  Aligned_cols=33  Identities=15%  Similarity=0.294  Sum_probs=26.2

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|++++..++.+          .-+++|+||+|.+
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l----------~~~~~lvav~d~~   34 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL----------DEECSITGIAPGV   34 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC----------CTTEEEEEEECSS
T ss_pred             ceEEEEEccchhHHHHHHhc----------CCCcEEEEEecCC
Confidence            38999999999998766655          1258999999964

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.31  E-value=0.074  Score=38.37  Aligned_cols=31  Identities=13%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRV   41 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrV   41 (95)
                      |++++|+|||-|.+|..++..+++       +|+++.|
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~-------~G~~V~v   32 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAK-------YGLKTLM   32 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-------TTCCEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-------CCCcEEE
Confidence            899999999999999999877654       5766443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=93.28  E-value=0.068  Score=38.08  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=26.2

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +|.+||+|.+|+.+++.+.+       .|  +++++|+|++.
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~-------~g--~~lv~v~d~~~   34 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLER-------NG--FEIAAILDVRG   34 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-------TT--CEEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHhc-------CC--CEEEEEEecCc
Confidence            68999999999999987752       24  57788888753

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=93.17  E-value=0.082  Score=41.49  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=28.8

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|.|||-|||.+++.+.++..     +=++.||+|.|+
T Consensus         2 ikVaInGfGrIGr~v~r~l~~~~~-----~~~~evvaInd~   37 (335)
T 1obf_O            2 IRVAINGYGRIGRNILRAHYEGGK-----SHDIEIVAINDL   37 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTS-----CSSEEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-----CCCcEEEEEeCC
Confidence            689999999999999998875311     125899999993

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=93.15  E-value=0.027  Score=41.24  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=26.6

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCccee
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVV   52 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~   52 (95)
                      +..+++|+|+|++|+++++.+..     .+.|  +++||+.|.+-...
T Consensus        84 ~~~rV~IIGAG~~G~~La~~~~~-----~~~g--~~iVg~~D~dp~k~  124 (215)
T 2vt3_A           84 EMTDVILIGVGNLGTAFLHYNFT-----KNNN--TKISMAFDINESKI  124 (215)
T ss_dssp             ---CEEEECCSHHHHHHHHCC-------------CCEEEEEESCTTTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHhc-----ccCC--cEEEEEEeCCHHHH
Confidence            45789999999999999984221     1223  78999999754443

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=93.08  E-value=0.067  Score=42.25  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      .|..++|.|=|||-|||.+++.+.++ +       +++||+|.|
T Consensus         8 ~~~~~kv~INGfGrIGr~v~ra~~~~-~-------~~evvaInd   43 (345)
T 2b4r_O            8 HMAATKLGINGFGRIGRLVFRAAFGR-K-------DIEVVAIND   43 (345)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHTC-S-------SEEEEEEEC
T ss_pred             chhheEEEEeCCchHHHHHHHHHhhC-C-------CcEEEEEcC
Confidence            47788999999999999999998753 1       589999999

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=92.99  E-value=0.04  Score=42.40  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=19.9

Q ss_pred             eeCEEEEe-eccccHHHHHHHHh
Q 034422            6 KIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      .++|+|+| +|.||+.+++++.+
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~   28 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDE   28 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHh
Confidence            47999999 99999999998875

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=92.98  E-value=0.067  Score=41.67  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             ceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            4 LKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         4 mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |+.++|+|+| .|.||+.+++++.+...+ .  ..+++++++++++
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~-~--~~~~ei~~l~s~~   49 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAY-A--DGRLRIGALTAAT   49 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHH-H--TTSEEEEEEEESS
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCC-C--CccEEEEEEECCC
Confidence            5558899999 999999999999753201 0  1136677777543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.93  E-value=0.043  Score=38.84  Aligned_cols=24  Identities=17%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||+|++|+++++.+.+
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~   44 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTA   44 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHh
Confidence            555789999999999999998865

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=92.86  E-value=0.061  Score=39.57  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=25.8

Q ss_pred             eCEEEEeeccccHHH-HHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQL-LQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~L-l~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.+||+|++|+.. ++.+.+       .  ..++++|+|.+
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~-------~--~~~~vav~d~~   34 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRA-------T--GGEVVSMMSTS   34 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHH-------T--TCEEEEEECSC
T ss_pred             CeEEEEcccHHHHHhhhHHhhc-------C--CCeEEEEECCC
Confidence            478999999999997 766654       1  36889999964

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.80  E-value=0.045  Score=41.44  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=22.2

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |-.|+..+|+++|.|+||.+++-.+..+
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~   28 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQ   28 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhC
Confidence            5678888999999999999999887653

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=92.79  E-value=0.046  Score=41.39  Aligned_cols=30  Identities=20%  Similarity=0.585  Sum_probs=24.9

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ..++|+++|||+||+.+++.           + ++++++|.|
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~-----------~-~leLv~v~~   40 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL-----------G-NFEKIYAYD   40 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH-----------S-CCSEEEEEC
T ss_pred             ccceEEEECcCHHHHHHHhc-----------C-CcEEEEEEe
Confidence            45789999999999999887           2 577778777

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=92.77  E-value=0.12  Score=33.43  Aligned_cols=38  Identities=18%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ++.-+++|+|.|.-|+.+++.+.+..        .++++|+.|...
T Consensus         2 ~~~~~vlIiGaG~~g~~l~~~l~~~~--------g~~vvg~~d~~~   39 (141)
T 3nkl_A            2 NAKKKVLIYGAGSAGLQLANMLRQGK--------EFHPIAFIDDDR   39 (141)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHSS--------SEEEEEEECSCG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC--------CcEEEEEEECCc
Confidence            45567899999999999999987531        389999998653

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=92.58  E-value=0.062  Score=39.73  Aligned_cols=33  Identities=12%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             eCEEEEeeccccH-HHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGR-QLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~-~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|.|||+|++|+ ..++.+.+..        ..+|+ |+|.+
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~--------~~~l~-v~d~~   36 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWP--------DIELV-LCTRN   36 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTST--------TEEEE-EECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCC--------CceEE-EEeCC
Confidence            7899999999998 5887775421        25667 77753

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=92.56  E-value=0.07  Score=40.68  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             eeCEEEEeec-cccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCG-GVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G-~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+| .+|+..++.+.+..        ++++++|+|.+
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~~--------~~~l~av~d~~   37 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHHP--------DAQIVAACDPN   37 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHCT--------TEEEEEEECSC
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhCC--------CeEEEEEEeCC
Confidence            5889999999 89988887775421        38899999964

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=91.85  E-value=0.072  Score=38.76  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      +..+++|+|+|+.|+++++.+..     .  . .+++||+.|..-.
T Consensus        79 ~~~rV~IIGaG~~G~~la~~~~~-----~--~-g~~iVg~~D~dp~  116 (211)
T 2dt5_A           79 RKWGLCIVGMGRLGSALADYPGF-----G--E-SFELRGFFDVDPE  116 (211)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCC-----C--S-SEEEEEEEESCTT
T ss_pred             CCCEEEEECccHHHHHHHHhHhh-----c--C-CcEEEEEEeCCHH
Confidence            45789999999999999974211     1  2 5899999996433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.84  E-value=0.08  Score=33.35  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|+|+|+|.+|+.+++.+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~   25 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE   25 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHh
Confidence            468999999999999998864

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=91.72  E-value=0.085  Score=41.18  Aligned_cols=27  Identities=19%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             CCcc-eeeCEEEEe-eccccHHHHHHHHh
Q 034422            1 MATL-KKIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~m-k~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      |--| +.++|+|+| -|.||++|+++|.+
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~   29 (359)
T 4dpk_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSN   29 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTT
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHh
Confidence            3345 469999999 69999999997754

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=91.72  E-value=0.085  Score=41.18  Aligned_cols=27  Identities=19%  Similarity=0.484  Sum_probs=20.2

Q ss_pred             CCcc-eeeCEEEEe-eccccHHHHHHHHh
Q 034422            1 MATL-KKIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~m-k~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      |--| +.++|+|+| -|.||++|+++|.+
T Consensus         1 ~~~M~~~~kVaIvGATGyvG~eLlrlL~~   29 (359)
T 4dpl_A            1 MILMRRTLKAAILGATGLVGIEYVRMLSN   29 (359)
T ss_dssp             -----CCEEEEETTTTSTTHHHHHHHHTT
T ss_pred             CCcCCCCCeEEEECCCCHHHHHHHHHHHh
Confidence            3345 469999999 69999999997754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.71  E-value=0.078  Score=37.59  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=20.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+..+|.+||+|++|+++++.+.+.
T Consensus         2 m~~m~i~iiG~G~mG~~~a~~l~~~   26 (262)
T 2rcy_A            2 MENIKLGFMGLGQMGSALAHGIANA   26 (262)
T ss_dssp             CSSSCEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHC
Confidence            4445799999999999999988763

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=91.58  E-value=0.13  Score=40.52  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      |..++|.|=|||-+||-++|.+.++       + +++||+|-|
T Consensus         1 m~~~kv~INGfGrIGr~v~R~~~~~-------~-~~~ivaiNd   35 (337)
T 3v1y_O            1 MGKIKIGINGFGRIGRLVARVALQS-------E-DVELVAVND   35 (337)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHTC-------S-SEEEEEEEC
T ss_pred             CCceEEEEECCChHHHHHHHHHHhC-------C-CcEEEEEeC
Confidence            4467899999999999999987753       2 589999988

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=91.50  E-value=0.16  Score=40.14  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      ++| .++|.|=|||-+||-++|.+.++       + +++||+|-|
T Consensus         1 ~~m-~~kv~INGfGrIGr~v~R~~~~~-------~-~~~ivaind   36 (338)
T 3lvf_P            1 GSM-AVKVAINGFGRIGRLAFRRIQEV-------E-GLEVVAVND   36 (338)
T ss_dssp             CCC-CEEEEEECCSHHHHHHHHHHHTS-------T-TEEEEEEEC
T ss_pred             CCc-cEEEEEECCCcHHHHHHHHHHHC-------C-CceEEEEec
Confidence            456 47899999999999999987753       1 589999988

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=91.29  E-value=0.11  Score=41.06  Aligned_cols=38  Identities=13%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             CcceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            2 ATLKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         2 ~~mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .+|+.++|+|+| -|.||++|++++.+. +       .++|+.++.|
T Consensus        15 ~~M~~~kVaIvGAtG~vG~ell~lL~~h-p-------~~el~~l~aS   53 (381)
T 3hsk_A           15 SHMSVKKAGVLGATGSVGQRFILLLSKH-P-------EFEIHALGAS   53 (381)
T ss_dssp             ---CCEEEEEETTTSHHHHHHHHHHTTC-S-------SEEEEEEEEC
T ss_pred             ccCCccEEEEECCCChHHHHHHHHHHcC-C-------CceEEEeecc
Confidence            368889999999 699999999987662 2       2566666433

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=91.18  E-value=0.093  Score=37.94  Aligned_cols=25  Identities=20%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+..+|.+||+|++|+++++.+.+.
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~   28 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRD   28 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhC
Confidence            6566799999999999999988753

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=91.06  E-value=0.19  Score=37.61  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +++.|||+ |.+|+..++.+.+       .+  .+++||+|.+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~-------~~--~~lvav~d~~~   38 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKD-------TG--NCLVSAYDIND   38 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHH-------TT--CEEEEEECSSC
T ss_pred             eEEEEECCCcHHHHHHHHHHHh-------CC--CEEEEEEcCCH
Confidence            67799999 5799988877754       13  58999999743

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=90.90  E-value=0.095  Score=40.86  Aligned_cols=26  Identities=19%  Similarity=0.454  Sum_probs=22.1

Q ss_pred             CcceeeCEEEEee-ccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      ++|+.+||+|+|- |+||+.|+-+|.+
T Consensus        20 ~s~~~vKVaViGAaG~IG~~la~~la~   46 (345)
T 4h7p_A           20 GSMSAVKVAVTGAAGQIGYALVPLIAR   46 (345)
T ss_dssp             --CCCEEEEEESTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECcCcHHHHHHHHHHHh
Confidence            5799999999996 9999999988875

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=90.81  E-value=0.15  Score=38.20  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=26.3

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |..|+..+|+|||-|.+|.+++..+.+       +|+++.|+
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~-------~G~~v~v~   55 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQ-------NGIDVSVY   55 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHT-------TTCEEEEE
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHH-------CCCCEEEE
Confidence            556777899999999999999987764       47665544

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=90.81  E-value=0.053  Score=39.95  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc-eec
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL-VVA   53 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~-l~~   53 (95)
                      ..+..+++|+|+|+.|+++++.+..     ++.  .+++||+.|..-. .++
T Consensus        81 ~~~~~~V~IvGaG~lG~aLa~~~~~-----~~~--g~~iVg~~D~dp~~kiG  125 (212)
T 3keo_A           81 DHSTTNVMLVGCGNIGRALLHYRFH-----DRN--KMQISMAFDLDSNDLVG  125 (212)
T ss_dssp             TTSCEEEEEECCSHHHHHHTTCCCC-----TTS--SEEEEEEEECTTSTTTT
T ss_pred             CCCCCEEEEECcCHHHHHHHHhhhc-----ccC--CeEEEEEEeCCchhccC
Confidence            3456789999999999998876421     122  5999999997655 443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=90.71  E-value=0.11  Score=38.51  Aligned_cols=27  Identities=11%  Similarity=0.271  Sum_probs=21.0

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ..|...+|.+||.|++|.+++..+.+.
T Consensus         4 ~~m~~mkI~iIG~G~mG~~~a~~l~~~   30 (354)
T 1x0v_A            4 GSMASKKVCIVGSGNWGSAIAKIVGGN   30 (354)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHhc
Confidence            346556899999999999999998763

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=90.69  E-value=0.22  Score=37.14  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=26.2

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +++.|||+ |.+|+..++.+.+       .+  .+++||+|.+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~-------~~--~~lvav~d~~~   38 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKE-------VG--GVLVASLDPAT   38 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHH-------TT--CEEEEEECSSC
T ss_pred             eEEEEECCChHHHHHHHHHHHh-------CC--CEEEEEEcCCH
Confidence            67899999 5699988777754       13  58999999753

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=90.66  E-value=0.16  Score=40.75  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhH-H-HHh-----------c-CCeEEEEEEEcCCcceecc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRS-L-HAN-----------L-GVHLRVVGVSDSKSLVVAS   54 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~-~-~~k-----------~-Gi~lrVvgVaDSk~~l~~~   54 (95)
                      +.++|+|+|.||+|++|++=|..-+. . ++.           + --+++|||..|-+..-++.
T Consensus        14 ~~~rVaIVGvGN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~   77 (367)
T 1gr0_A           14 TEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGF   77 (367)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTS
T ss_pred             cCCCEEEECcChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHH
Confidence            45899999999999999997766442 1 111           1 1278899999865555543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.64  E-value=0.1  Score=40.07  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++|+..+|.++|.|.||.+++..+..+
T Consensus         3 ~~m~~~kI~viGaG~vG~~~a~~l~~~   29 (324)
T 3gvi_A            3 GSMARNKIALIGSGMIGGTLAHLAGLK   29 (324)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCcCCEEEEECCCHHHHHHHHHHHhC
Confidence            578888999999999999998877653

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=90.64  E-value=0.12  Score=38.52  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             eeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      .++|.|||+|.+|+. .++.+..+.       =+++|++|+|.+
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~-------~~~~l~av~d~~   38 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRK-------DSWHVAHIFRRH   38 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCT-------TTEEEEEEECSS
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcC-------CCeEEEEEEcCC
Confidence            478999999999985 344121211       148999999974

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.34  E-value=0.14  Score=36.38  Aligned_cols=25  Identities=20%  Similarity=0.529  Sum_probs=20.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+..+|+|.|.|.+|+++++.+.++
T Consensus         1 M~~~~ilVtGaG~iG~~l~~~L~~~   25 (286)
T 3gpi_A            1 MSLSKILIAGCGDLGLELARRLTAQ   25 (286)
T ss_dssp             -CCCCEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC
Confidence            3344689999999999999998764

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=90.33  E-value=0.12  Score=38.54  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||.|++|..++..+.+
T Consensus         1 M~~mkI~IiGaG~~G~~~a~~L~~   24 (335)
T 3ghy_A            1 MSLTRICIVGAGAVGGYLGARLAL   24 (335)
T ss_dssp             -CCCCEEEESCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH
Confidence            445588999999999999999876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.28  E-value=0.14  Score=31.30  Aligned_cols=21  Identities=14%  Similarity=0.379  Sum_probs=18.3

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|+|+|.|.+|+++++.+.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~   26 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKT   26 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHh
Confidence            367999999999999998765

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.17  E-value=0.13  Score=37.90  Aligned_cols=24  Identities=13%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||+|++|+++++.+.+
T Consensus         1 M~~~~I~iIG~G~mG~aia~~l~~   24 (280)
T 3tri_A            1 MNTSNITFIGGGNMARNIVVGLIA   24 (280)
T ss_dssp             -CCSCEEEESCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHH
Confidence            455678999999999999999876

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=90.06  E-value=0.17  Score=33.14  Aligned_cols=20  Identities=30%  Similarity=0.582  Sum_probs=18.3

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++|+|+|.+|+.+++.+.+
T Consensus         9 ~viIiG~G~~G~~la~~L~~   28 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLA   28 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHH
Confidence            68999999999999999876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.80  E-value=0.14  Score=37.70  Aligned_cols=24  Identities=13%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.++|.|.+|+.++..+.+
T Consensus         2 m~~mki~iiG~G~~G~~~a~~L~~   25 (359)
T 1bg6_A            2 IESKTYAVLGLGNGGHAFAAYLAL   25 (359)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCcCeEEEECCCHHHHHHHHHHHh
Confidence            455689999999999999998865

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=89.51  E-value=0.15  Score=38.97  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=21.9

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|+..+|.++|.|.||.+++..+..+
T Consensus         2 ~m~~~kI~iiGaG~vG~~~a~~l~~~   27 (321)
T 3p7m_A            2 AMARKKITLVGAGNIGGTLAHLALIK   27 (321)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhC
Confidence            57778899999999999999887653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.31  E-value=0.18  Score=36.36  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=19.4

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+|.+||.|++|..++..+.+.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~   30 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALR   30 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC
Confidence            4689999999999999988764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.05  E-value=0.17  Score=34.51  Aligned_cols=36  Identities=39%  Similarity=0.575  Sum_probs=25.2

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |..|++  |+|.| .|.||+++++.+.++       |  .+|+++..+
T Consensus         1 M~~m~~--ilItGatG~iG~~l~~~L~~~-------g--~~V~~~~r~   37 (227)
T 3dhn_A            1 MEKVKK--IVLIGASGFVGSALLNEALNR-------G--FEVTAVVRH   37 (227)
T ss_dssp             --CCCE--EEEETCCHHHHHHHHHHHHTT-------T--CEEEEECSC
T ss_pred             CCCCCE--EEEEcCCchHHHHHHHHHHHC-------C--CEEEEEEcC
Confidence            666654  69999 699999999998763       3  356666554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=89.03  E-value=0.41  Score=34.65  Aligned_cols=38  Identities=8%  Similarity=0.230  Sum_probs=27.1

Q ss_pred             cceeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            3 TLKKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      +|+..+|+|.|. |.||+++++.+.++       |-+.+|+++..+
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~-------g~~~~v~~~~~~   59 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQS-------YETYKIINFDAL   59 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHH-------CTTEEEEEEECC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhh-------CCCcEEEEEecc
Confidence            345567899998 99999999988763       445777777654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=88.92  E-value=0.18  Score=35.88  Aligned_cols=22  Identities=27%  Similarity=0.569  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .++|.+||+|.+|+.+++.+.+
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~   31 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR   31 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH
Confidence            4689999999999999998865

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=88.69  E-value=0.29  Score=36.28  Aligned_cols=33  Identities=18%  Similarity=0.416  Sum_probs=24.8

Q ss_pred             eCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|+|+|+ |.+|+.+++.+.+..      +  ++++++.|+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~------~--~elva~~d~   34 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAAD------D--LTLSAELDA   34 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCT------T--CEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC------C--CEEEEEEcc
Confidence            37899997 999999999875432      2  567777664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=88.61  E-value=0.42  Score=38.04  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |.+|...+|+|||-|.+|..++-.+.+
T Consensus        21 M~~~~~~dVlIVGaGpaGl~~A~~La~   47 (549)
T 2r0c_A           21 MNAPIETDVLILGGGPVGMALALDLAH   47 (549)
T ss_dssp             -CCCEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             cCCCCCCCEEEECcCHHHHHHHHHHHH
Confidence            556778999999999999999987754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=88.37  E-value=0.19  Score=36.89  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=20.9

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      |.+|+..+|+|.| .|.||+++++.+.++
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~   47 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILET   47 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHH
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhC
Confidence            5567667889999 699999999988764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=88.36  E-value=0.21  Score=35.70  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.+||.|++|+.++..+.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~   24 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ   24 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHh
Confidence            468999999999999999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=88.36  E-value=0.46  Score=33.75  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|..|.+.+..+.+
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~   24 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRR   24 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH
Confidence            778999999999999999988865

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=88.30  E-value=0.42  Score=35.58  Aligned_cols=22  Identities=14%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.+||+|.+|+.+++.+.+
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~   52 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCE   52 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHh
Confidence            3578999999999999998875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=88.23  E-value=0.23  Score=32.77  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=18.8

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .-+|+|+|+|.+|+.+++.+.+
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~   40 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS   40 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh
Confidence            3568999999999999988764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=88.21  E-value=0.23  Score=37.09  Aligned_cols=24  Identities=13%  Similarity=0.325  Sum_probs=19.8

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||.|++|.+++..+.+
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~   43 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTA   43 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH
Confidence            455689999999999999998865

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.02  E-value=0.22  Score=37.04  Aligned_cols=24  Identities=8%  Similarity=0.176  Sum_probs=19.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||+|.+|+++++.+.+
T Consensus        22 ~~~~~I~iIG~G~mG~~~A~~L~~   45 (312)
T 3qsg_A           22 SNAMKLGFIGFGEAASAIASGLRQ   45 (312)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECccHHHHHHHHHHHH
Confidence            345678999999999999998875

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=87.98  E-value=0.51  Score=37.88  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=39.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhH-HHHhcC-----------CeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRS-LHANLG-----------VHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~-~~~k~G-----------i~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      |..|+|+|+|.|||+++|++=+..-|. .-+..|           -|+.|||--|     ++..  .-|-|+.+++..
T Consensus        11 ~~mIrVaIvGvGnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~D-----Id~~--kvgk~l~eAi~~   81 (394)
T 3cin_A           11 HHMVKVLILGQGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYD-----VDRA--KIGKKLSEVVKQ   81 (394)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEE-----CBTT--TTTSBHHHHHHH
T ss_pred             cceeEEEEecCCHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEec-----CCcc--hhHHHHHHHHhh
Confidence            456999999999999999998876333 212212           3788888877     3332  446677666543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.94  E-value=0.23  Score=34.53  Aligned_cols=20  Identities=15%  Similarity=0.287  Sum_probs=18.4

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|+|+|.+|+.+++.+.+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~   21 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS   21 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHh
Confidence            68999999999999998875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.92  E-value=0.38  Score=35.86  Aligned_cols=26  Identities=12%  Similarity=0.143  Sum_probs=20.2

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..++.++|+|||.|.+|.+++..+.+
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~   44 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQ   44 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHh
Confidence            35678999999999999999988865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.82  E-value=0.29  Score=32.92  Aligned_cols=22  Identities=14%  Similarity=0.380  Sum_probs=19.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      -+|+|+|+|.+|+.+++.+.++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~   61 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRAR   61 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhc
Confidence            4789999999999999988653

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=87.75  E-value=0.4  Score=37.93  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=26.7

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      +.++|.|.|||.+||.+++.....       +  ++||+|-|
T Consensus         6 ~~~kvgInGFGRIGrlv~R~~~~~-------~--veivainD   38 (346)
T 3h9e_O            6 RELTVGINGFGRIGRLVLRACMEK-------G--VKVVAVND   38 (346)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-------T--CEEEEEEC
T ss_pred             CeeEEEEECCChHHHHHHHHHHhC-------C--CEEEEEeC
Confidence            347889999999999998876532       4  78999987

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=87.75  E-value=0.29  Score=35.25  Aligned_cols=21  Identities=14%  Similarity=0.447  Sum_probs=18.7

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++|.+||+|.+|+.+++.+.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~   26 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLK   26 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH
T ss_pred             ceEEEECchHHHHHHHHHHHh
Confidence            478999999999999998865

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=87.70  E-value=0.24  Score=37.27  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |...+|.+||.|.+|+++++.+.+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~   54 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRR   54 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHh
Confidence            334678999999999999998875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=87.07  E-value=0.28  Score=35.59  Aligned_cols=21  Identities=19%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             eCEEEEee-ccccHHHHHHHHh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      .+|.+||+ |.+|+++++.+.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~   33 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHD   33 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHh
Confidence            46899999 9999999998865

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=86.97  E-value=0.29  Score=40.20  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             eCEEEEeeccccHHHHHHHHhhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCR   29 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~   29 (95)
                      .+|++||+|+||+..++.+.++.
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~   36 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKF   36 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHB
T ss_pred             CCEEEECcCHHHHHHHHHHHhCC
Confidence            57899999999999999998754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=86.92  E-value=0.49  Score=35.31  Aligned_cols=32  Identities=16%  Similarity=0.084  Sum_probs=25.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |+..+|+|||-|-+|.+++..+.+       +|+++.|+
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~-------~G~~v~v~   34 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRD-------AGVDVDVY   34 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHH-------TTCEEEEE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-------CCCCEEEE
Confidence            667899999999999999988765       47664444

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=86.87  E-value=0.5  Score=34.36  Aligned_cols=29  Identities=17%  Similarity=0.329  Sum_probs=23.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      ++|+|||-|-+|..++-.+.       ++|+++.|+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~-------~~G~~v~v~   30 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLR-------KHGIKVTIY   30 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-------HTTCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-------hCCCCEEEE
Confidence            57899999999999988765       468876654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=86.85  E-value=0.38  Score=34.13  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             CCcceeeCEEEEee-ccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      |.+|+  +|+|.|. |.+|+++++.+.++
T Consensus         1 M~~~~--~ilVtGatG~iG~~l~~~L~~~   27 (308)
T 1qyc_A            1 MGSRS--RILLIGATGYIGRHVAKASLDL   27 (308)
T ss_dssp             -CCCC--CEEEESTTSTTHHHHHHHHHHT
T ss_pred             CCCCC--EEEEEcCCcHHHHHHHHHHHhC
Confidence            55565  4699996 99999999998763

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=86.73  E-value=0.21  Score=37.84  Aligned_cols=22  Identities=18%  Similarity=0.578  Sum_probs=18.6

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+||+|+|+|.||+.+++.+.+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~   37 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD   37 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT
T ss_pred             ccEEEEECCCHHHHHHHHHHhc
Confidence            3568999999999999988754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=86.69  E-value=0.3  Score=36.75  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |..++..+|.|+|.|.||.+++..+..
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~   27 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMN   27 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHh
Confidence            555566789999999999999977654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=86.68  E-value=0.56  Score=36.75  Aligned_cols=32  Identities=25%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      -.|+|+|+|+||+.+++.+.       +.|  .+|+ ++|++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~-------~~G--akVv-vsD~~  207 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAA-------EAG--AQLL-VADTD  207 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-------HTT--CEEE-EECSC
T ss_pred             CEEEEECcCHHHHHHHHHHH-------HCC--CEEE-EEeCC
Confidence            35799999999999987653       346  3666 77753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=86.49  E-value=0.37  Score=31.20  Aligned_cols=27  Identities=15%  Similarity=0.421  Sum_probs=22.8

Q ss_pred             CCcceeeCEEEEeeccccH-HHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGR-QLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~-~Ll~~I~~   27 (95)
                      |..|+.++|+++|-.+||. +|++.+..
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHh
Confidence            6778999999999999997 56677665

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=86.35  E-value=0.37  Score=33.85  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=18.9

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.++|+|++|+++++.+.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~   49 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVG   49 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHH
Confidence            3578999999999999998865

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=86.16  E-value=0.36  Score=36.84  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=21.2

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .|+.-+|.++|.|.||.+++..+..
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~   29 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQ   29 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHh
Confidence            3556689999999999999988875

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=86.12  E-value=0.68  Score=35.79  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=21.6

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |..|+..+|+|||-|..|-+.+..+.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~   27 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQ   27 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHH
Confidence            778888999999999999999988754

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=85.84  E-value=0.37  Score=34.77  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=19.6

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      |..|++  |+|.| .|.||+++++.+.++
T Consensus         1 Ms~m~~--vlVTGatG~iG~~l~~~L~~~   27 (348)
T 1oc2_A            1 MSQFKN--IIVTGGAGFIGSNFVHYVYNN   27 (348)
T ss_dssp             --CCSE--EEEETTTSHHHHHHHHHHHHH
T ss_pred             CCcCcE--EEEeCCccHHHHHHHHHHHHh
Confidence            666654  68998 699999999988763

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=85.83  E-value=0.27  Score=35.95  Aligned_cols=24  Identities=21%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++.-+|+|+|+|++|+++++.+..
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~   49 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAG   49 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHH
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHH
Confidence            455689999999999999998865

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=85.77  E-value=0.34  Score=35.60  Aligned_cols=22  Identities=14%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.+||+|.+|+.+++.+.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~   36 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE   36 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHH
Confidence            4589999999999999998865

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=85.53  E-value=0.33  Score=37.76  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++++|+|||.| .|+.-++.+.+..+       .+++|||+|++
T Consensus         6 ~~~rv~VvG~G-~g~~h~~a~~~~~~-------~~elvav~~~~   41 (372)
T 4gmf_A            6 PKQRVLIVGAK-FGEMYLNAFMQPPE-------GLELVGLLAQG   41 (372)
T ss_dssp             -CEEEEEECST-TTHHHHHTTSSCCT-------TEEEEEEECCS
T ss_pred             CCCEEEEEehH-HHHHHHHHHHhCCC-------CeEEEEEECCC
Confidence            45899999998 68765554443211       37889999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=85.47  E-value=0.42  Score=37.68  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+|.+||.|.||..++..+.+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~   27 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHM   27 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhc
Confidence            4789999999999999988764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=85.42  E-value=0.37  Score=31.85  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=18.5

Q ss_pred             eCEEEEee-ccccHHHHHHHHhh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      .+|+|.|. |.+|+++++.+.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~   26 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA   26 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC
Confidence            35789998 99999999998763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=85.35  E-value=0.41  Score=36.18  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=20.4

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +..+|+++|.|.||..++-.+..+
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~   29 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALR   29 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC
Confidence            458999999999999999887664

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=85.31  E-value=0.46  Score=33.72  Aligned_cols=21  Identities=19%  Similarity=0.607  Sum_probs=18.9

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.+||+|++|+++++.+.+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~   23 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMIN   23 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHh
Confidence            478999999999999999876

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=85.25  E-value=0.38  Score=36.61  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +||.|+|.|+||++++-.+..+
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~   22 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLN   22 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhC
Confidence            4689999999999999887653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=85.10  E-value=0.46  Score=34.23  Aligned_cols=21  Identities=19%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.+||+|.+|+.+++.+.+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~   25 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLK   25 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHH
Confidence            468999999999999998864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=85.02  E-value=0.4  Score=34.28  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++...+|.+||.|++|+++++.+.+
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~   40 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALAD   40 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHH
Confidence            4556778999999999999988875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=85.00  E-value=0.43  Score=34.86  Aligned_cols=22  Identities=14%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.+||+|.+|+.+++.+.+
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~   51 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLK   51 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEEcccHHHHHHHHHHHh
Confidence            4679999999999999998864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.97  E-value=0.22  Score=39.67  Aligned_cols=21  Identities=29%  Similarity=0.680  Sum_probs=18.7

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++|+|+|+|.||+.+++.+.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~   24 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVG   24 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHH
Confidence            458999999999999999865

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=84.65  E-value=0.56  Score=37.31  Aligned_cols=26  Identities=27%  Similarity=0.134  Sum_probs=21.4

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .|+..+|.+||.|.||..++..+.+.
T Consensus         6 ~~~~mkI~VIG~G~vG~~~A~~La~~   31 (481)
T 2o3j_A            6 FGKVSKVVCVGAGYVGGPTCAMIAHK   31 (481)
T ss_dssp             SCCCCEEEEECCSTTHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhc
Confidence            34456899999999999999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=84.57  E-value=0.7  Score=35.30  Aligned_cols=27  Identities=15%  Similarity=0.220  Sum_probs=22.3

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |..|+..+|+|||.|..|-+.+..+.+
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~   27 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLA   27 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHh
Confidence            556777899999999999999998875

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=84.52  E-value=0.37  Score=37.59  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             eCEEEEe-eccccHHHHHHHHhhh
Q 034422            7 IPSVLMG-CGGVGRQLLQHIVSCR   29 (95)
Q Consensus         7 I~v~LiG-~G~VG~~Ll~~I~~~~   29 (95)
                      ++|+|+| +|.||+.+++.+..++
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~   25 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEER   25 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcC
Confidence            4789999 9999999999555544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=84.38  E-value=0.28  Score=35.76  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=20.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++.-+|+|+|+|++|+.+++.+.+
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~   52 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLAS   52 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHH
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHH
Confidence            345678999999999999998875

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.34  E-value=0.64  Score=33.89  Aligned_cols=20  Identities=20%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||.|.+|+++++.+.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~   25 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAF   25 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHh
Confidence            57999999999999998874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=84.27  E-value=0.42  Score=36.44  Aligned_cols=25  Identities=20%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|.++++.+.+
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~   57 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTR   57 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHH
Confidence            4566789999999999999998876

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=84.27  E-value=0.77  Score=33.95  Aligned_cols=24  Identities=17%  Similarity=0.039  Sum_probs=19.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|.+|.+++..+.+
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~   32 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQ   32 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH
Confidence            666899999999999999988765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=83.74  E-value=1  Score=32.47  Aligned_cols=24  Identities=13%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|..|-+.+..+.+
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~   25 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKD   25 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CccCcEEEECcCHHHHHHHHHHHH
Confidence            778899999999999999998854

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=83.63  E-value=0.22  Score=38.37  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=21.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++.-+|+|+|+|++|.++++.+..
T Consensus        33 ~L~~~~VlivG~GGlG~~ia~~La~   57 (346)
T 1y8q_A           33 RLRASRVLLVGLKGLGAEIAKNLIL   57 (346)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHH
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHH
Confidence            4566789999999999999998875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=83.54  E-value=0.51  Score=36.27  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |+..+|.+||.|++|.+++..+.+.
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~   51 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARK   51 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTT
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHC
Confidence            3456899999999999999999863

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=83.43  E-value=0.81  Score=34.28  Aligned_cols=32  Identities=16%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCe-EEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVH-LRVV   42 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~-lrVv   42 (95)
                      |+..+|+|||-|.+|.+++..+.+       +|++ +.|+
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~-------~G~~~v~v~   34 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQ-------AGIGKVTLL   34 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH-------TTCSEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-------CCCCeEEEE
Confidence            567899999999999999988765       3665 5544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=83.42  E-value=0.51  Score=34.62  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.3

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.+||+|.+|+++++.+.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~   28 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLR   28 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH
Confidence            4578999999999999998875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=83.40  E-value=0.49  Score=36.51  Aligned_cols=24  Identities=13%  Similarity=0.458  Sum_probs=19.6

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|.+||+|.+|+.+++.+.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~   43 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRK   43 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHh
Confidence            455678999999999999998875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=83.38  E-value=0.93  Score=32.35  Aligned_cols=24  Identities=8%  Similarity=0.091  Sum_probs=21.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|..|.+.+..+.+
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~   29 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAAR   29 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH
Confidence            467899999999999999988865

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=83.19  E-value=0.61  Score=34.12  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.++|.|++|..++..+.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~   23 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQ   23 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHH
Confidence            478999999999999999876

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=83.18  E-value=0.54  Score=36.08  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +..+|.++|.|+||.+++..+..+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~   27 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQ   27 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC
Confidence            456789999999999999988763

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=83.12  E-value=1.2  Score=36.71  Aligned_cols=40  Identities=13%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             CCcce--eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            1 MATLK--KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         1 ~~~mk--~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      |.+|+  ..+|+|||-|.+|..++-.+.+...  ..+|++++|+
T Consensus         1 m~~~~~~~~dVlIVGaGpaGL~lA~~La~~~~--~~~Gi~v~vi   42 (665)
T 1pn0_A            1 MTKYSESYCDVLIVGAGPAGLMAARVLSEYVR--QKPDLKVRII   42 (665)
T ss_dssp             -CCEEEEEEEEEEECCSHHHHHHHHHHHHHHH--HSTTCCEEEE
T ss_pred             CCCCCCCCCcEEEECcCHHHHHHHHHHhcccc--ccCCCCEEEE
Confidence            55664  4789999999999999988876211  2268775544

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=83.12  E-value=0.73  Score=36.98  Aligned_cols=25  Identities=24%  Similarity=0.506  Sum_probs=19.8

Q ss_pred             ceeeCEEEEe-eccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      |...+|.|+| .|.||+.-++.+.+.
T Consensus         1 M~~k~i~ILGsTGSIG~~tldVi~~~   26 (376)
T 3a06_A            1 MEERTLVILGATGSIGTQTLDVLKKV   26 (376)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHS
T ss_pred             CCcceEEEECCCCHHHHHHHHHHHhC
Confidence            4446789999 599999999999764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=83.10  E-value=0.7  Score=34.13  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..+|.+||+|.+|+++++.+.+
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~   30 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLK   30 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHH
Confidence            3578999999999999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=83.04  E-value=0.56  Score=33.46  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=18.0

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|++|+++++.+.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~   21 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRR   21 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHH
Confidence            58999999999999998865

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=82.99  E-value=0.75  Score=33.91  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.++|.|++|..++..+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~   23 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQR   23 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHH
Confidence            478999999999999999876

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=82.85  E-value=1.1  Score=35.03  Aligned_cols=36  Identities=17%  Similarity=0.299  Sum_probs=27.3

Q ss_pred             eeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ..|+|+|+| .|.||++|++++.+. +       .++|+.++.++
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~h-P-------~~el~~l~S~~   48 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNH-P-------EAKITYLSSRT   48 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHC-T-------TEEEEEEECST
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcC-C-------CcEEEEEeCcc
Confidence            458999997 699999999999863 2       34666676543

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=82.84  E-value=1.1  Score=33.13  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++..+|+|||-|.+|.+++..+.+
T Consensus         4 ~~~~dVvIVGaG~aGl~~A~~L~~   27 (399)
T 2x3n_A            4 DNHIDVLINGCGIGGAMLAYLLGR   27 (399)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHh
Confidence            346899999999999999988765

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=82.83  E-value=0.81  Score=33.10  Aligned_cols=20  Identities=20%  Similarity=0.376  Sum_probs=18.0

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||.|++|+++++.+.+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~   22 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVR   22 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHH
Confidence            57999999999999998875

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=82.75  E-value=0.56  Score=31.36  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=18.4

Q ss_pred             CEEEEe-eccccHHHHHHHHhh
Q 034422            8 PSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      +|+|.| .|.+|+++++++.++
T Consensus         7 ~vlVtGatG~iG~~l~~~l~~~   28 (215)
T 2a35_A            7 RVLLAGATGLTGEHLLDRILSE   28 (215)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHC
T ss_pred             eEEEECCCcHHHHHHHHHHHhC
Confidence            579998 799999999999874

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=82.70  E-value=0.39  Score=35.92  Aligned_cols=22  Identities=9%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+|.+||+|.+|+++++.+.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~   46 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR   46 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT
T ss_pred             CeEEEECccHHHHHHHHHHHHc
Confidence            4689999999999999988763

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=82.66  E-value=0.95  Score=36.92  Aligned_cols=26  Identities=12%  Similarity=0.212  Sum_probs=22.2

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ..|+..+|+|||-|.+|..++-.+.+
T Consensus        19 ~~M~~~DVvIVGgG~AGl~aA~~Lar   44 (591)
T 3i3l_A           19 SHMTRSKVAIIGGGPAGSVAGLTLHK   44 (591)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEECcCHHHHHHHHHHHc
Confidence            35788999999999999999987765

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=82.58  E-value=0.56  Score=35.87  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             eCEEEEe-eccccHHHHHHHHhh
Q 034422            7 IPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      ++|+|+| +|.||+.+++++.++
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~   23 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEAR   23 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC
Confidence            4789999 999999999998853

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=82.35  E-value=1.1  Score=31.65  Aligned_cols=26  Identities=19%  Similarity=0.232  Sum_probs=22.8

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +.|+..+|+|||-|..|-+.+..+.+
T Consensus         1 ~~~~~~~vvIIG~G~aGl~aA~~l~~   26 (320)
T 1trb_A            1 GTTKHSKLLILGSGPAGYTAAVYAAR   26 (320)
T ss_dssp             CCEEEEEEEEECCSHHHHHHHHHHHT
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHH
Confidence            35788999999999999999988865

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=82.23  E-value=0.61  Score=34.69  Aligned_cols=22  Identities=14%  Similarity=0.240  Sum_probs=19.1

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+|.++|.|.+|.+++..+.++
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~   26 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD   26 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            4689999999999999988653

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=82.12  E-value=0.55  Score=35.60  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             cc-eeeCEEEEeeccccHHHHHHHHhh
Q 034422            3 TL-KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         3 ~m-k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +| ++.+|+++|.|+||.+++-.+..+
T Consensus         1 ~~~~~~KI~IiGaG~vG~~~a~~l~~~   27 (318)
T 1ez4_A            1 SMPNHQKVVLVGDGAVGSSYAFAMAQQ   27 (318)
T ss_dssp             CBTTBCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHcC
Confidence            35 347899999999999999887654

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=82.07  E-value=0.6  Score=35.40  Aligned_cols=23  Identities=13%  Similarity=0.307  Sum_probs=19.4

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++.+|+++|.|.+|.+++..+..
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~   35 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQ   35 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh
Confidence            33589999999999999887765

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=82.00  E-value=1.1  Score=35.11  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=18.7

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      -+|+|+|+|.+|+.+++.+.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~   25 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLS   25 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHH
Confidence            368999999999999998876

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=81.99  E-value=0.46  Score=35.20  Aligned_cols=24  Identities=8%  Similarity=0.149  Sum_probs=20.5

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+++|.+||.|.+|.+++..+.+.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~   28 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSV   28 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHT
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHC
Confidence            345789999999999999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=81.96  E-value=1.3  Score=30.96  Aligned_cols=24  Identities=13%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|..|-+.+..+.+
T Consensus         1 M~~~dVvVVGgG~aGl~aA~~la~   24 (232)
T 2cul_A            1 MAAYQVLIVGAGFSGAETAFWLAQ   24 (232)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH
Confidence            677899999999999999988765

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=81.66  E-value=0.66  Score=33.18  Aligned_cols=21  Identities=14%  Similarity=0.313  Sum_probs=18.2

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.+||+|.+|+.+++.+.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~   24 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLAR   24 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHh
Confidence            368999999999999988764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=81.65  E-value=1.1  Score=31.61  Aligned_cols=25  Identities=20%  Similarity=0.011  Sum_probs=21.2

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+..+|+|||-|..|-+.+..+.+
T Consensus         4 ~~~~~~vvIIG~G~aGl~aA~~l~~   28 (332)
T 3lzw_A            4 DTKVYDITIIGGGPVGLFTAFYGGM   28 (332)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHH
Confidence            4566899999999999999887765

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=81.37  E-value=0.68  Score=33.77  Aligned_cols=26  Identities=12%  Similarity=0.249  Sum_probs=18.6

Q ss_pred             cceeeCEEEEee-ccccHHHHHHHHhh
Q 034422            3 TLKKIPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      +|+..+|+|.|. |.||+++++.+.++
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~   69 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDK   69 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHC
Confidence            345567899997 99999999998763

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=81.32  E-value=0.94  Score=32.47  Aligned_cols=20  Identities=20%  Similarity=0.617  Sum_probs=18.1

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|.+|+++++.+.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~   21 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMK   21 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHH
T ss_pred             eEEEEeccHHHHHHHHHHHH
Confidence            68999999999999998865

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=81.24  E-value=0.72  Score=32.55  Aligned_cols=21  Identities=24%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|.+||.|++|..++..+.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~   22 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ   22 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT
T ss_pred             eEEEECcCHHHHHHHHHHHhC
Confidence            589999999999999988763

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=82.16  E-value=0.3  Score=34.43  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++..+|.+||+|++|+++++.+.+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~   40 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQ   40 (201)
Confidence            344578999999999999998865

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=81.18  E-value=0.73  Score=35.67  Aligned_cols=23  Identities=17%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             cceeeCEEEEe-eccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      +|  ++|+|+| -|.||+++++++.+
T Consensus         3 ~M--~kv~IvGatG~vG~~l~~~L~~   26 (337)
T 3dr3_A            3 AM--LNTLIVGASGYAGAELVTYVNR   26 (337)
T ss_dssp             CC--EEEEEETTTSHHHHHHHHHHHH
T ss_pred             Cc--eEEEEECCCChHHHHHHHHHHh
Confidence            46  6889999 59999999998875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=81.13  E-value=0.6  Score=33.49  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=19.1

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      |..|   +|+|.| .|.||+++++++.++
T Consensus         1 M~~m---~vlVTGatG~iG~~l~~~L~~~   26 (336)
T 2hun_A            1 MHSM---KLLVTGGMGFIGSNFIRYILEK   26 (336)
T ss_dssp             --CC---EEEEETTTSHHHHHHHHHHHHH
T ss_pred             CCCC---eEEEECCCchHHHHHHHHHHHh
Confidence            4455   489999 699999999988763

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=81.10  E-value=1.3  Score=34.67  Aligned_cols=24  Identities=13%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+..+|+|||-|.+|.+.+..+.+
T Consensus         1 M~~~DVvIIGgGi~G~~~A~~La~   24 (501)
T 2qcu_A            1 METKDLIVIGGGINGAGIAADAAG   24 (501)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHh
Confidence            677899999999999999988765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=80.99  E-value=0.75  Score=32.18  Aligned_cols=22  Identities=14%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      .+|.+||.|.+|+++++.+.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~   41 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIA   41 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC
Confidence            4689999999999999988753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=80.97  E-value=0.71  Score=33.75  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=18.7

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|+|+|.|.||..++..+.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~   28 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQ   28 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHh
Confidence            578999999999999988865

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=80.94  E-value=0.96  Score=32.08  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             CCcceeeCEEEEe-eccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      |..|+  +|+|.| .|.+|+++++.+.++
T Consensus         1 M~~~~--~ilVtGatG~iG~~l~~~L~~~   27 (313)
T 1qyd_A            1 MDKKS--RVLIVGGTGYIGKRIVNASISL   27 (313)
T ss_dssp             -CCCC--CEEEESTTSTTHHHHHHHHHHT
T ss_pred             CCCCC--EEEEEcCCcHHHHHHHHHHHhC
Confidence            54444  479999 599999999998763

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=80.85  E-value=0.74  Score=34.00  Aligned_cols=21  Identities=14%  Similarity=0.414  Sum_probs=18.6

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.+||+|.+|+++++.+.+
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~   42 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLK   42 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHH
Confidence            467999999999999998875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=80.84  E-value=0.75  Score=32.44  Aligned_cols=20  Identities=15%  Similarity=0.321  Sum_probs=18.1

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|.+|+++++.+.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~   21 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVK   21 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHH
Confidence            58999999999999998865

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=80.80  E-value=1.1  Score=35.17  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=27.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ++|.|=|||-+||-++|.+.++       + +++||+|-|.
T Consensus         2 ~kv~INGfGrIGr~v~R~~~~~-------~-~~~ivaiNd~   34 (332)
T 3pym_A            2 VRVAINGFGRIGRLVMRIALSR-------P-NVEVVALNDP   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHS-------T-TCEEEEEECT
T ss_pred             eEEEEECCCcHHHHHHHHHHhC-------C-CcEEEEEeCC
Confidence            6789999999999999987753       1 4889999883

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=80.79  E-value=0.54  Score=33.28  Aligned_cols=21  Identities=10%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++|.+||+|.+|+.+++.+.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~   24 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQ   24 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT
T ss_pred             cEEEEECCCHHHHHHHHHHHh
Confidence            368999999999999998864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=80.68  E-value=0.72  Score=36.57  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++|.+||.|.||..++..+.++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~   24 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL   24 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhc
Confidence            4789999999999999988763

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=80.61  E-value=0.97  Score=32.11  Aligned_cols=19  Identities=21%  Similarity=0.543  Sum_probs=17.3

Q ss_pred             CEEEEeeccccHHHHHHHH
Q 034422            8 PSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~   26 (95)
                      +|.+||+|.+|+.+++.+.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~   21 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLA   21 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHH
T ss_pred             eEEEEcccHHHHHHHHHHh
Confidence            5899999999999999875

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=80.55  E-value=0.72  Score=34.12  Aligned_cols=21  Identities=14%  Similarity=0.363  Sum_probs=18.9

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|.|+|.|++|..++..+.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~   23 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAK   23 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHh
Confidence            468999999999999999876

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=80.36  E-value=0.75  Score=36.45  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |...+|.+||.|.+|++++..+.+
T Consensus         3 m~~~~IgvIG~G~mG~~lA~~L~~   26 (474)
T 2iz1_A            3 MAQANFGVVGMAVMGKNLALNVES   26 (474)
T ss_dssp             CTTBSEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeeHHHHHHHHHHHHh
Confidence            444679999999999999998875

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=80.34  E-value=0.93  Score=32.41  Aligned_cols=20  Identities=15%  Similarity=0.375  Sum_probs=17.7

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|++|+++++.+.+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~   22 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRR   22 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHH
T ss_pred             EEEEEecCHHHHHHHHHHHh
Confidence            47999999999999998865

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=80.30  E-value=0.71  Score=34.49  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=18.4

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||.|++|.+++..+.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~   36 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK   36 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT
T ss_pred             eEEEECCCHHHHHHHHHHHh
Confidence            78999999999999998865

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=80.28  E-value=0.67  Score=31.63  Aligned_cols=20  Identities=25%  Similarity=0.574  Sum_probs=17.9

Q ss_pred             CEEEEe-eccccHHHHHHHHh
Q 034422            8 PSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      +|.++| .|++|+++++.+.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~   22 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLAT   22 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCHHHHHHHHHHHH
Confidence            579999 99999999998865

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=80.18  E-value=0.75  Score=34.07  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=18.2

Q ss_pred             eCEEEEeeccccHHHHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~   26 (95)
                      .+|.++|.|++|..++..+.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~   22 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS   22 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh
Confidence            46899999999999999986

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=80.08  E-value=0.81  Score=32.36  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.8

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|++|+++++.+.+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~   21 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRS   21 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHH
T ss_pred             eEEEEechHHHHHHHHHHHH
Confidence            57999999999999998864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=80.05  E-value=0.43  Score=33.38  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=18.4

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      -+++|+|+|.+|+.+++.+.+
T Consensus        10 ~~viI~G~G~~G~~la~~L~~   30 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRG   30 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTT
T ss_pred             CEEEEECCChHHHHHHHHHHh
Confidence            368999999999999998864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=80.01  E-value=1.5  Score=32.41  Aligned_cols=23  Identities=17%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ...+|+|||-|..|...+-.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~   26 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK   26 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh
Confidence            45899999999999999987765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1ebfa1	168	c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogena	8e-05

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 8e-05
 Identities = 13/88 (14%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 5  KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDN 64
          K +   ++G G VG   L  +++ +S      +   +V +++++  +++ D        +
Sbjct: 3  KVVNVAVIGAGVVGSAFLDQLLAMKS-----TITYNLVLLAEAERSLISKDFSPLNVGSD 57

Query: 65 LLSEICRLKAGHSSLSTLIGGFGGNPLI 92
            + +         L  LI     +P  
Sbjct: 58 WKAALAASTTKTLPLDDLIAHLKTSPKP 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	99.25
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	98.4
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	98.33
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	98.29
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	98.25
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	98.11
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.59
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.95
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.57
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.47
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.37
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.3
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.15
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.76
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.48
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.31
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.02
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.84
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.79
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.6
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.43
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.29
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.25
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.88
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.54
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.38
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.34
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.94
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	92.88
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.86
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.74
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.72
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.64
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.59
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.44
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.42
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.4
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	92.36
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.35
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	92.03
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.03
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	91.93
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.72
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.5
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.47
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.4
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	90.88
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	90.77
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.73
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.1
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.93
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	89.76
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	89.74
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.5
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	89.43
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	89.3
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	89.25
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.87
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	88.79
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	88.63
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	88.27
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	87.81
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	87.79
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.66
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	87.65
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.65
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	87.48
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.36
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.91
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.75
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	86.49
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	86.4
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	86.38
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	86.12
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	86.1
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	85.55
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	85.32
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	85.12
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	84.74
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	84.74
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	84.61
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	84.44
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.28
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.02
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	83.81
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	83.59
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.36
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.27
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.9
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	82.9
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	82.49
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	82.01
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.69
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	81.64
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	80.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	80.58
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	80.44
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	80.42
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.14
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	80.14

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=2.4e-12  Score=89.54  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=46.6

Q ss_pred             cceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHH
Q 034422            3 TLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNL   65 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~   65 (95)
                      |+|+|+|+|+|||+||++|+++|.+++     ++++++|++|+||+++++  +  ++|++.+.
T Consensus         1 s~k~i~I~l~G~G~VG~~l~~~l~~~~-----~~l~~~v~~i~~s~~~~~--~--~~g~~~~~   54 (168)
T d1ebfa1           1 STKVVNVAVIGAGVVGSAFLDQLLAMK-----STITYNLVLLAEAERSLI--S--KDFSPLNV   54 (168)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHCC-----CSSEEEEEEEECSSBEEE--C--SSCSCCSC
T ss_pred             CCCEEEEEEEeCCHHHHHHHHHHHHhH-----HHhhhheEEEEEeeeeee--c--ccccchHh
Confidence            579999999999999999999998754     478999999999999999  4  66776643

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.40  E-value=9.7e-08  Score=69.96  Aligned_cols=65  Identities=28%  Similarity=0.423  Sum_probs=52.9

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG   84 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~   84 (95)
                      +--+|+|-|||+||..+++.+.+      +.|  .+||+|+|++|.++  +  |+|+|.+++++.   |.+.+++..+++
T Consensus        31 ~g~~v~IqGfGnVG~~~a~~L~~------~~G--~kvv~vsD~~g~i~--~--~~G~d~~~l~~~---~~~~~~~~~~~~   95 (239)
T d1gtma1          31 KGKTIAIQGYGNAGYYLAKIMSE------DFG--MKVVAVSDSKGGIY--N--PDGLNADEVLKW---KNEHGSVKDFPG   95 (239)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH------TTC--CEEEEEECSSCEEE--E--EEEECHHHHHHH---HHHHSSSTTCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH------hcC--cceeecccccccee--c--CCcCCHHHHHHH---HHhccccccCCC
Confidence            34568999999999999987743      234  69999999999999  5  889999999988   666677776654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=3.5e-07  Score=66.65  Aligned_cols=66  Identities=30%  Similarity=0.372  Sum_probs=52.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCccccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLI   83 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~   83 (95)
                      .+..+|+|=|||+||+.+++.+.+      +.|  -+|++|+|++|.++  +  |+|||...|.+.   |++.+.+..++
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~------e~G--a~vv~vsd~~G~i~--~--~~Gld~~~l~~~---~~~~~~~~~~~   93 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQ------ELG--SKVVAVSDSRGGIY--N--PEGFDVEELIRY---KKEHGTVVTYP   93 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH------HHC--CEEEEEEETTEEEE--C--TTCCCHHHHHHH---HHHSSCSTTCS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH------hcC--CceEEeecCCCcEE--e--ccccchHHHHHH---HHhhcceeccc
Confidence            345678999999999999988743      245  58999999999998  6  999999999988   65666665554


Q ss_pred             C
Q 034422           84 G   84 (95)
Q Consensus        84 ~   84 (95)
                      +
T Consensus        94 ~   94 (234)
T d1b26a1          94 K   94 (234)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=6.8e-07  Score=67.71  Aligned_cols=63  Identities=17%  Similarity=0.309  Sum_probs=52.5

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhhhcCCCCcccccC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRLKAGHSSLSTLIG   84 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~K~~~g~l~~l~~   84 (95)
                      --+|+|=|||+||+.+++.+.+       .|  -+||+|+||+|.+.  +  ++|||.+.|.+.   |.+.+++...++
T Consensus        36 gktvaIqGfGnVG~~~A~~L~e-------~G--akvv~vsD~~G~i~--~--~~Gld~~~L~~~---~~~~~~~~~~~~   98 (293)
T d1hwxa1          36 DKTFAVQGFGNVGLHSMRYLHR-------FG--AKCVAVGESDGSIW--N--PDGIDPKELEDF---KLQHGTILGFPK   98 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-------TT--CEEEEEEETTEEEC--C--TTCCCHHHHHHH---HHTTSSSTTCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-------CC--CEEEEEEccchhhc--c--ccccchHHHHHH---HHHcCCeecccc
Confidence            3468999999999999988865       35  79999999999998  6  899999999988   666677765544

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=98.25  E-value=2.4e-07  Score=68.57  Aligned_cols=71  Identities=18%  Similarity=0.275  Sum_probs=53.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHHHhh--hcCCCCccc
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEICRL--KAGHSSLST   81 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~~~~--K~~~g~l~~   81 (95)
                      ++--+++|=|||+||+.+++.+.+       +|  -+|++|+||+|.++  |  |+|||.+++++....  ....+++.+
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e-------~G--akvvavsD~~G~i~--~--~~Gld~~~l~~~~~~~~~~~~~~~~~  100 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAE-------LG--AKAVTLSGPDGYIY--D--PEGITTEEKINYMLEMRASGRNKVQD  100 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHH-------HT--CEEEEEEETTEEEE--C--TTCSCSHHHHHHHHHHHHHCCCCTHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-------cC--CeEEEEecCCceEe--c--CCCCCHHHHHHHHHHHhhhcCcchhh
Confidence            344578999999999999988854       45  78999999999999  6  999999999876431  123455555


Q ss_pred             ccCCCC
Q 034422           82 LIGGFG   87 (95)
Q Consensus        82 l~~~~~   87 (95)
                      +...++
T Consensus       101 ~~~~~~  106 (255)
T d1bgva1         101 YADKFG  106 (255)
T ss_dssp             HHHHHT
T ss_pred             hhhhcC
Confidence            544433

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=98.11  E-value=1.1e-06  Score=64.07  Aligned_cols=53  Identities=23%  Similarity=0.381  Sum_probs=45.4

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      .+--+|+|=|||+||+.+++.+.+       .|  .+|++|+|++|.+.  +  ++|||.+.|.+.
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~-------~G--akvv~vsD~~g~i~--~--~~Gld~~~l~~~   81 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEK-------MG--AKVIAVSDINGVAY--R--KEGLNVELIQKN   81 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT-------TT--CEEEEEECSSCEEE--C--TTCCCTHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-------cC--CeEEEeeccccccc--c--cccccHHHHHHH
Confidence            344578999999999999988764       45  68999999999999  6  899999998876

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.59  E-value=1.5e-05  Score=53.66  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=33.0

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcce
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLV   51 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l   51 (95)
                      |++|+|.|+|+|++|+..++.+.+..        ++++|+|+|++...
T Consensus         1 M~kirvgiiG~G~ig~~~~~~l~~~~--------~~elvav~~~~~~~   40 (170)
T d1f06a1           1 MTNIRVAIVGYGNLGRSVEKLIAKQP--------DMDLVGIFSRRATL   40 (170)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCS--------SEEEEEEEESSSCC
T ss_pred             CCcceEEEECChHHHHHHHHHHHhCC--------CcEEEEEEeccccc
Confidence            88999999999999999988876522        48899999986543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00029  Score=47.30  Aligned_cols=39  Identities=28%  Similarity=0.512  Sum_probs=29.1

Q ss_pred             ceeeCEEEEeeccccHHH-HHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            4 LKKIPSVLMGCGGVGRQL-LQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~L-l~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ||.+++.|||+|.+|+.+ ++.+.+       ..=.++|+||+|++.
T Consensus         1 MkkirigiIG~G~~g~~~h~~~l~~-------~~~~~~i~~v~d~~~   40 (181)
T d1zh8a1           1 LRKIRLGIVGCGIAARELHLPALKN-------LSHLFEITAVTSRTR   40 (181)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHT-------TTTTEEEEEEECSSH
T ss_pred             CCCcEEEEEcCCHHHHHHHHHHHHh-------CCCCeEEEEEEeccH
Confidence            899999999999999863 554433       222478999999743

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.57  E-value=0.00071  Score=46.41  Aligned_cols=35  Identities=17%  Similarity=0.477  Sum_probs=29.6

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +++|+|.|||.+||.+++.+.++.        ++.||+|.|.+
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~--------dieiVaINd~~   36 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQD--------DMELIGITKTK   36 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCT--------TEEEEEEEESS
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCC--------CceEEEEecCC
Confidence            479999999999999999886643        58999999843

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.47  E-value=0.0011  Score=45.77  Aligned_cols=34  Identities=21%  Similarity=0.543  Sum_probs=29.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      |||+|.|||.+||.++|.+.++.        +++||+|.|..
T Consensus         2 IKVaINGfGRIGR~v~Ral~~~~--------dievVaInd~~   35 (178)
T d1b7go1           2 VNVAVNGYGTIGKRVADAIIKQP--------DMKLVGVAKTS   35 (178)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCT--------TEEEEEEECSS
T ss_pred             eEEEEECCCHHHHHHHHHHHhCC--------CCEEEEEECCC
Confidence            68899999999999999987742        48999999854

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.37  E-value=0.001  Score=44.95  Aligned_cols=37  Identities=16%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +++++.|+|.|++|+.++..+.++.+       .+++++|+|++
T Consensus         3 kkirvaIIGaG~ig~~~~~~~l~~~~-------~~el~avas~~   39 (157)
T d1nvmb1           3 QKLKVAIIGSGNIGTDLMIKVLRNAK-------YLEMGAMVGID   39 (157)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCS-------SEEEEEEECSC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHhhCC-------cceEEEEEecc
Confidence            56999999999999976543332222       36888999854

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.15  E-value=0.0026  Score=42.14  Aligned_cols=34  Identities=24%  Similarity=0.465  Sum_probs=26.6

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .|++.|||+|.+|+..++.+..-.        +++|+||+|.
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~--------~~~i~ai~d~   34 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAP--------NATISGVASR   34 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCT--------TEEEEEEECS
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCC--------CCEEEEEEeC
Confidence            378999999999998777664311        4789999995

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.76  E-value=0.0043  Score=42.37  Aligned_cols=33  Identities=27%  Similarity=0.580  Sum_probs=27.3

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +|+|-|||-+||.+++.+..+.        ++.||+|.|..
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~--------di~vvaInd~~   35 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQD--------DMKVIGVSKTR   35 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSS--------SEEEEEEEESS
T ss_pred             EEEEEcCcHHHHHHHHHHHhCC--------CceEEEEecCC
Confidence            5699999999999999886532        58999999853

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.48  E-value=0.0033  Score=43.54  Aligned_cols=36  Identities=14%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             eeeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            5 KKIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      ++|+|+|||+|++|+. +++.+..       .. .++|+||+|.+
T Consensus        32 ~~iriaiIG~G~~~~~~~~~~~~~-------~~-~~~ivav~d~~   68 (221)
T d1h6da1          32 RRFGYAIVGLGKYALNQILPGFAG-------CQ-HSRIEALVSGN   68 (221)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTT-------CS-SEEEEEEECSC
T ss_pred             CCEEEEEEcCcHHHHHHHHHHHHh-------CC-CceEEEEecCC
Confidence            6799999999999974 4444322       11 58999999964

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.31  E-value=0.012  Score=38.50  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=38.5

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceecccCCCCCCCHHHHHH
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSE   68 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~   68 (95)
                      -....++|+|||+|.+|+..++.+.+.+..   .  .+.++++.+++..-.-..  ....|.+++++
T Consensus         3 ~~~~k~kv~iIG~G~~g~~h~~~l~~~~~~---~--~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~   62 (172)
T d1lc0a1           3 TNSGKFGVVVVGVGRAGSVRLRDLKDPRSA---A--FLNLIGFVSRRELGSLDE--VRQISLEDALR   62 (172)
T ss_dssp             CCCCSEEEEEECCSHHHHHHHHHHTSHHHH---T--TEEEEEEECSSCCCEETT--EEBCCHHHHHH
T ss_pred             CCCCCcEEEEEcCCHHHHHHHHHHHhCCCC---c--EEEEEeccchHHHHHhhc--cCcCCHHHHHh
Confidence            345779999999999999888777653321   1  256777777754333222  44556666554

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.02  E-value=0.0024  Score=41.27  Aligned_cols=43  Identities=19%  Similarity=0.184  Sum_probs=32.2

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcceeccc
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSLVVASD   55 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~l~~~d   55 (95)
                      ++++|+|+|.|+.|++|++.+..      +.  .++++|..|......+..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~------~~--~~~iv~fiDdd~~k~G~~   44 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGF------GE--SFELRGFFDVDPEKVGRP   44 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCC------CS--SEEEEEEEESCTTTTTCE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhh------cC--CcEEEEEEeCchHhcCCE
Confidence            57899999999999999874421      12  489999999866665443

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.84  E-value=0.0095  Score=38.45  Aligned_cols=32  Identities=16%  Similarity=0.412  Sum_probs=24.3

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGV   44 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV   44 (95)
                      ||.  |.+||+|.+|.++++-+.+       +|.+.+|+|+
T Consensus         1 Mk~--I~IIG~G~mG~sla~~L~~-------~g~~~~I~~~   32 (171)
T d2g5ca2           1 MQN--VLIVGVGFMGGSFAKSLRR-------SGFKGKIYGY   32 (171)
T ss_dssp             CCE--EEEESCSHHHHHHHHHHHH-------TTCCSEEEEE
T ss_pred             CCE--EEEEccCHHHHHHHHHHHh-------cCCCeEEEEE
Confidence            664  6899999999999988754       3455666665

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.79  E-value=0.011  Score=40.68  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=28.1

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      +|+|.|=|||-+||.++|++.++.        +++||+|-|+
T Consensus         1 tikigINGFGRIGR~v~R~~~~~~--------~i~ivaINd~   34 (166)
T d1gado1           1 TIKVGINGFGRIGRIVFRAAQKRS--------DIEIVAINDL   34 (166)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCS--------SEEEEEEECS
T ss_pred             CeEEEEECCcHHHHHHHHHHhhCC--------CeEEEEEeCC
Confidence            367899999999999999776532        5899999983

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.60  E-value=0.016  Score=40.30  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=30.2

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +|+|.|=|||-+||.++|++.++.    ..+-+++||+|-|..
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~----~~~~~i~iv~Ind~~   40 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDG----LLGTEIDVVAVVDMN   40 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT----CBTTTEEEEEEEESC
T ss_pred             CeEEEEECCChHHHHHHHHHHHcC----CCCCCeEEEEEecCC
Confidence            378999999999999999876631    123469999998843

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.018  Score=37.24  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=25.5

Q ss_pred             eeCEEEEeeccccHH-HHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            6 KIPSVLMGCGGVGRQ-LLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~-Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      .++|.|||+|.+|+. .++.+.+       .. +++++||+|.+.
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~-------~~-~~~i~~v~d~~~   37 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAA-------AS-DWTLQGAWSPTR   37 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHS-------CS-SEEEEEEECSSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHh-------CC-CcEEEEEEechh
Confidence            378999999999975 3443332       21 488999999754

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=94.29  E-value=0.013  Score=40.23  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |+|.|=|||-+||.++|++.++      .+-+++||+|-|+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~------~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGR------KDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC------SSCSEEEEEEECT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEEcCC
Confidence            6889999999999999976653      2335999999873

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.25  E-value=0.021  Score=39.08  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      +|+|.|=|||-+||.++|++.++     ...=+++||+|-|+
T Consensus         1 tikigINGfGRIGR~v~R~~~~~-----~~~~~~~vvaINd~   37 (173)
T d1obfo1           1 TIRVAINGYGRIGRNILRAHYEG-----GKSHDIEIVAINDL   37 (173)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT-----TSCSSEEEEEEECS
T ss_pred             CeEEEEECCcHHHHHHHHHHHhC-----CCCCCeEEEEEcCC
Confidence            36789999999999999988753     11336899999984

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=93.88  E-value=0.018  Score=39.54  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=27.8

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      .|+|.|=|||-+||.++|++.++.        ++++|+|-|.
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~--------~~~ivaINd~   34 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSG--------KVDIVAINDP   34 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC--------SSEEEEEECS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCC--------CcEEEEecCC
Confidence            378999999999999999876532        3788999883

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.54  E-value=0.016  Score=36.50  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.4

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++|+|+|+|.+|+.+++.+.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~   21 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE   21 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHH
Confidence            368999999999999988765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.018  Score=38.81  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CcceeeCEEEEeeccccHHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .+|++-||.|||.|+||..++-.+..
T Consensus        15 ~~~~~~KI~IIGaG~VG~~~A~~l~~   40 (159)
T d2ldxa1          15 DKLSRCKITVVGVGDVGMACAISILL   40 (159)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHT
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHh
Confidence            46788899999999999999987765

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.34  E-value=0.017  Score=37.94  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=24.0

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHhh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |.+...-||.|||.|.||.+++-.+..+
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~   28 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQ   28 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhc
Confidence            6677778999999999999999877663

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.94  E-value=0.021  Score=36.76  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=17.5

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ||.+||+|.+|+++++.+.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~   21 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRR   21 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHH
Confidence            58999999999999988754

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.88  E-value=0.034  Score=36.32  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             eeeCEEEEee-ccccHHHHHHHHh
Q 034422            5 KKIPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      |.|+|+|+|- |.||++|++++.+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~   24 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDE   24 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh
Confidence            4689999987 9999999999965

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.86  E-value=0.044  Score=37.20  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCC
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSK   48 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk   48 (95)
                      +|.|=|||-+||.+++++.++.        +++||+|-|+.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~--------~~~iv~INd~~   34 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRK--------DIEVVAINDPF   34 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCS--------SEEEEEEECTT
T ss_pred             eEEEECCCHHHHHHHHHHhhCC--------CcEEEEECCCC
Confidence            5789999999999999886632        48999998843

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.74  E-value=0.03  Score=38.08  Aligned_cols=31  Identities=29%  Similarity=0.508  Sum_probs=25.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      |+|.|=|||-+||.++|.+.+       .+  ++||+|-|
T Consensus         1 ikigINGfGRIGR~~~R~l~~-------~~--i~iv~INd   31 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHS-------RG--VEVALIND   31 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-------HT--CCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHhc-------CC--CEEEEECC
Confidence            578999999999999987543       23  67899987

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=92.72  E-value=0.036  Score=37.97  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=28.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |+|.|=|||-+||.+++++.++.        ++++|+|-|.
T Consensus         2 ikIgINGfGRIGR~v~R~~l~~~--------~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGFGRIGRNVFRAALKNP--------DIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCT--------TEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCC--------CcEEEEEcCC
Confidence            78999999999999999887532        5899999883

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.64  E-value=0.048  Score=37.29  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=27.3

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      +|.|=|||-+||.++|++.++.      +-+++||+|-|
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~------~~~i~vvaINd   34 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERK------NPDIEVVAIND   34 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT------CTTCEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhcc------CCCEEEEEecc
Confidence            5789999999999999887642      34599999977

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=0.038  Score=35.12  Aligned_cols=27  Identities=26%  Similarity=0.532  Sum_probs=23.7

Q ss_pred             cceeeCEEEEeeccccH-HHHHHHHhhh
Q 034422            3 TLKKIPSVLMGCGGVGR-QLLQHIVSCR   29 (95)
Q Consensus         3 ~mk~I~v~LiG~G~VG~-~Ll~~I~~~~   29 (95)
                      +|+.++|+|+|-.+||. +|++.+...+
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCC
Confidence            59999999999999998 8888887643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.44  E-value=0.069  Score=36.29  Aligned_cols=35  Identities=11%  Similarity=0.287  Sum_probs=28.2

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      .++|+|||-|-+|..++..+.+  ..+++.|+++.|+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~--~~~~~~G~~v~vl   41 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSE--YVRQKPDLKVRII   41 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH--HHHHSTTCCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHh--cccccCCCcEEEE
Confidence            4899999999999999999985  3345678776655

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.42  E-value=0.033  Score=34.56  Aligned_cols=20  Identities=15%  Similarity=0.419  Sum_probs=17.8

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++|+|+|.+|+.+++.+.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~   21 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR   21 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHH
Confidence            36899999999999999876

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.40  E-value=0.037  Score=37.20  Aligned_cols=25  Identities=12%  Similarity=0.401  Sum_probs=22.4

Q ss_pred             cceeeCEEEEee-ccccHHHHHHHHh
Q 034422            3 TLKKIPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~mk~I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      ++++|||+|+|- |.||++|++++.+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~   27 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLAN   27 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTT
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHh
Confidence            678999999995 8899999998875

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=92.36  E-value=0.029  Score=36.91  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++.||.|||.|.||.+++..+..+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~   27 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQ   27 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc
Confidence            345889999999999999888774

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.049  Score=36.01  Aligned_cols=40  Identities=30%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             ceeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCcc
Q 034422            4 LKKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKSL   50 (95)
Q Consensus         4 mk~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~~   50 (95)
                      |+  +|+|+|- |.||+.+++.+.+++++-     ..+++..+.|+..
T Consensus         1 Mk--kVaIvGATG~VGqeli~~Ll~~~~~p-----~~~l~~~~ss~s~   41 (146)
T d1t4ba1           1 MQ--NVGFIGWRGMVGSVLMQRMVEERDFD-----AIRPVFFSTSQLG   41 (146)
T ss_dssp             CC--EEEEESTTSHHHHHHHHHHHHTTGGG-----GSEEEEEESSSTT
T ss_pred             Cc--EEEEECCccHHHHHHHHHHHhCCCCC-----eeEEEEeeccccc
Confidence            66  5799998 999999999877755431     2445566655444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=92.03  E-value=0.071  Score=33.25  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=18.0

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|+|+|.|.+|+.+++.+.++
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~   24 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS   24 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHhC
Confidence            468999999999999887654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.03  E-value=0.032  Score=35.78  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=18.5

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ||.+||+|++|+++++.|.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~   21 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRS   21 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHH
Confidence            58999999999999999877

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.93  E-value=0.061  Score=39.29  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             eeeCEEEEeeccccHHHHHHHHhhhHHHHhc---CC-----------eEEEEEEEcCCcceecccCCCCCCCHHHHH
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVSCRSLHANL---GV-----------HLRVVGVSDSKSLVVASDVFTKEFNDNLLS   67 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~---Gi-----------~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll   67 (95)
                      +.|+|+|+|.||+.++|++=|..-++--..+   |+           |+.+|+-.|     +|..  .=|.|+.+.+
T Consensus         1 ~kIrVaIvGvGNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafD-----VD~~--KVGkdlseAi   70 (243)
T d1gr0a1           1 TEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFD-----VDAK--KVGFDLSDAI   70 (243)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEE-----CBTT--TTTSBHHHHT
T ss_pred             CceEEEEEcchHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEe-----cCcc--ccCCcHHHHH
Confidence            4699999999999999999998733211222   43           789999888     5443  6677777544

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.72  E-value=0.071  Score=36.58  Aligned_cols=41  Identities=12%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             eeeCEEEEeeccccHHHHH-HHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            5 KKIPSVLMGCGGVGRQLLQ-HIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~-~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      +.|+|.+||+|+.|.-..+ ++    +.+.+..=+++||||+|.+.
T Consensus        15 k~irvgiIG~G~~~~~~~~~h~----~ai~~~~~~~~ivav~d~~~   56 (237)
T d2nvwa1          15 RPIRVGFVGLTSGKSWVAKTHF----LAIQQLSSQFQIVALYNPTL   56 (237)
T ss_dssp             CCEEEEEECCCSTTSHHHHTHH----HHHHHTTTTEEEEEEECSCH
T ss_pred             CCeEEEEEecCccccHHHHHHH----HHHHhcCCCeEEEEEEcCCH
Confidence            6799999999997642222 11    11223222589999998643

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.50  E-value=0.067  Score=36.50  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=25.6

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      ||.|=|||-+||.+++++.++       +  +++|+|-|+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~-------~--~~ivaINd~   32 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEM-------G--AQVVAVNDP   32 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH-------T--CCEEEEECT
T ss_pred             eEEEECCcHHHHHHHHHHHhC-------C--CcEEEECCC
Confidence            679999999999999987742       3  578999884

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.041  Score=34.55  Aligned_cols=21  Identities=24%  Similarity=0.692  Sum_probs=18.7

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +||+|+|.|++|+.++..+.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~   21 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK   21 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHH
Confidence            368999999999999988876

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.029  Score=37.63  Aligned_cols=37  Identities=22%  Similarity=0.429  Sum_probs=29.4

Q ss_pred             eeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcCCc
Q 034422            5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDSKS   49 (95)
Q Consensus         5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDSk~   49 (95)
                      ..|+|+|.|+ |..|+++++.+.+...        ++++|..|+++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~--------~~lv~~~~~~~   40 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEG--------VQLGAALEREG   40 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTT--------EECCCEECCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--------CEEEEEEeccc
Confidence            4689999996 9999999999887542        67778777643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.40  E-value=0.079  Score=35.71  Aligned_cols=31  Identities=23%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      ||. +|+|||.|.+|..++-.+.       ++|+++.|+
T Consensus         1 mk~-~V~IvGaGp~Gl~~A~~L~-------~~G~~v~vl   31 (292)
T d1k0ia1           1 MKT-QVAIIGAGPSGLLLGQLLH-------KAGIDNVIL   31 (292)
T ss_dssp             CBC-SEEEECCSHHHHHHHHHHH-------HHTCCEEEE
T ss_pred             CCC-CEEEECcCHHHHHHHHHHH-------HCCCCEEEE
Confidence            444 8999999999999998765       458775555

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.077  Score=34.49  Aligned_cols=25  Identities=32%  Similarity=0.539  Sum_probs=21.7

Q ss_pred             ceeeCEEEEeeccccH-HHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGR-QLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~-~Ll~~I~~~   28 (95)
                      |++|+|+++|--+||. +|++.+...
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999998 677777663

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=90.88  E-value=0.048  Score=35.98  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=19.3

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+-||.|||.|+||+.++-.+..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~   28 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCAL   28 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh
Confidence            56789999999999998876654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.77  E-value=0.17  Score=31.80  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=27.5

Q ss_pred             CcceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            2 ATLKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         2 ~~mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      |.|++|  +|.| -|.||+++++.+.++       |-+++|+++..+
T Consensus         1 ~~~~tV--lVtGatG~iG~~l~~~Ll~~-------g~~v~v~~~~R~   38 (252)
T d2q46a1           1 ANLPTV--LVTGASGRTGQIVYKKLKEG-------SDKFVAKGLVRS   38 (252)
T ss_dssp             CSCCEE--EEESTTSTTHHHHHHHHHHT-------TTTCEEEEEESC
T ss_pred             CCCCEE--EEECCccHHHHHHHHHHHHC-------CCcEEEEEEcCC
Confidence            467777  8998 799999999998764       334567766544

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.73  E-value=0.054  Score=34.90  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=18.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +||.|||.|+||.+++..+..+
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~   22 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEK   22 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC
Confidence            4689999999999999777653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.061  Score=36.82  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=19.8

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +.-+|+|+|+|++|..+++.+.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~   51 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLAS   51 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHH
T ss_pred             hCCCEEEECCCHHHHHHHHHHHH
Confidence            45679999999999999988864

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.93  E-value=0.048  Score=35.61  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=20.6

Q ss_pred             ce-eeCEEEEee-ccccHHHHHHHHh
Q 034422            4 LK-KIPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk-~I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      |+ .++|.|+|. |.||+.++-.|..
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~   26 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAA   26 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            44 579999996 9999999998875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=89.76  E-value=0.072  Score=34.55  Aligned_cols=20  Identities=20%  Similarity=0.370  Sum_probs=17.9

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ||.+||.|+||.+++-.+..
T Consensus         3 KI~IIGaG~VG~~~A~~l~~   22 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAA   22 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHh
Confidence            78999999999999988765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.74  E-value=0.072  Score=34.46  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=18.2

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +||.|||.|+||.+++-.+..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~   21 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLM   21 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHh
Confidence            478999999999999877765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.50  E-value=0.064  Score=32.99  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=17.8

Q ss_pred             CEEEE-eeccccHHHHHHHHhh
Q 034422            8 PSVLM-GCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~Li-G~G~VG~~Ll~~I~~~   28 (95)
                      +|+++ |.|++|+++++.+.++
T Consensus         2 ki~vigGaG~iG~alA~~la~~   23 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL   23 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC
Confidence            46888 8999999999988763

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.43  E-value=0.096  Score=33.77  Aligned_cols=20  Identities=15%  Similarity=0.428  Sum_probs=18.0

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|.+||+|++|+++++.+.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~   21 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLK   21 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHH
Confidence            48999999999999998865

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.30  E-value=0.093  Score=34.03  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++|-+||+|+.|.++++.+.++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~   23 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK   23 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEEeehHHHHHHHHHHHHC
Confidence            3689999999999999998763

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.25  E-value=0.082  Score=34.45  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=18.6

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +||.|||.|.||.+++-.+..+
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~   22 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLN   22 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc
Confidence            4789999999999999776653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.87  E-value=0.09  Score=33.59  Aligned_cols=21  Identities=14%  Similarity=0.346  Sum_probs=18.0

Q ss_pred             eCEEEEeeccccHHHHHHHHh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +||.+||+|+.|+++++-+.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~   21 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVK   21 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHH
Confidence            368999999999999997754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=88.79  E-value=0.13  Score=33.00  Aligned_cols=15  Identities=13%  Similarity=0.541  Sum_probs=13.0

Q ss_pred             eeCEEEEeeccccHH
Q 034422            6 KIPSVLMGCGGVGRQ   20 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~   20 (95)
                      +|+|.|||+|+.|+.
T Consensus         1 tirvgiiG~G~~~~~   15 (167)
T d1xeaa1           1 SLKIAMIGLGDIAQK   15 (167)
T ss_dssp             CEEEEEECCCHHHHH
T ss_pred             CeEEEEEcCCHHHHH
Confidence            478999999999965

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=88.63  E-value=0.09  Score=36.34  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +--+|+|-|||+||+.+++.+.+
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~   48 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAE   48 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH
Confidence            33568999999999999988765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.27  E-value=0.076  Score=34.27  Aligned_cols=20  Identities=10%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ||.+||+|+.|+++++.+.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~   21 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQ   21 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTT
T ss_pred             EEEEEeccHHHHHHHHHHHh
Confidence            58999999999999998765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=87.81  E-value=0.12  Score=32.77  Aligned_cols=21  Identities=14%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++++||.|++|.+++..+.++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~   23 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALK   23 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT
T ss_pred             EEEEECccHHHHHHHHHHHHC
Confidence            579999999999999999875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.79  E-value=0.17  Score=32.57  Aligned_cols=23  Identities=17%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      |++  |.+||.|..|.++++.|.++
T Consensus         1 M~k--Ig~IGlG~MG~~iA~~L~~~   23 (162)
T d3cuma2           1 MKQ--IAFIGLGHMGAPMATNLLKA   23 (162)
T ss_dssp             CCE--EEEECCSTTHHHHHHHHHHT
T ss_pred             CCE--EEEEEEHHHHHHHHHHHHHC
Confidence            555  69999999999999998774

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.66  E-value=0.051  Score=35.46  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.4

Q ss_pred             eeeCEEEEe-eccccHHHHHHHHhh
Q 034422            5 KKIPSVLMG-CGGVGRQLLQHIVSC   28 (95)
Q Consensus         5 k~I~v~LiG-~G~VG~~Ll~~I~~~   28 (95)
                      +.++|.|+| .|+||.+++-.|.++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~   26 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNG   26 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHH
Confidence            467999999 599999999988753

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=87.65  E-value=0.12  Score=33.74  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      -||.|||.|+||.+++-.+..+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~   23 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQR   23 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHhc
Confidence            4789999999999999888753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.65  E-value=0.2  Score=31.55  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=17.7

Q ss_pred             CEEEEe-eccccHHHHHHHHh
Q 034422            8 PSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      +|.+|| .|.+|+.+++.+.+
T Consensus        11 kI~iIGg~G~mG~~la~~L~~   31 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRA   31 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCHHHHHHHHHHHH
Confidence            679999 89999999998764

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=87.48  E-value=0.12  Score=34.52  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.1

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +++-||.|||.|+||++++-.+..
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~   41 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILG   41 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh
Confidence            345699999999999999887765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.36  E-value=0.13  Score=33.87  Aligned_cols=22  Identities=36%  Similarity=0.505  Sum_probs=18.1

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +-||.|||.|.||++++-.+..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~   24 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ   24 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHh
Confidence            3589999999999999965544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.91  E-value=0.24  Score=30.26  Aligned_cols=24  Identities=17%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             CcceeeCEEEEeecccc-HHHHHHHHh
Q 034422            2 ATLKKIPSVLMGCGGVG-RQLLQHIVS   27 (95)
Q Consensus         2 ~~mk~I~v~LiG~G~VG-~~Ll~~I~~   27 (95)
                      -++++  +.++|.|++| ++||+.+.+
T Consensus         6 ~~~~~--ihfiGigG~GMs~LA~~L~~   30 (96)
T d1p3da1           6 RRVQQ--IHFIGIGGAGMSGIAEILLN   30 (96)
T ss_dssp             TTCCE--EEEETTTSTTHHHHHHHHHH
T ss_pred             hhCCE--EEEEEECHHHHHHHHHHHHh
Confidence            34454  5999999999 666666654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.75  E-value=0.15  Score=33.39  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=18.2

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ||.|||.|+||.+++-.+..+
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~   23 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQ   23 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHhc
Confidence            579999999999999887753

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.49  E-value=0.18  Score=33.60  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=18.7

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|.++|.|.||..++-.++++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~   22 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR   22 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhC
Confidence            589999999999999998764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=86.40  E-value=0.19  Score=33.33  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.9

Q ss_pred             ce-eeCEEEEeeccccHHHHHHHHh
Q 034422            4 LK-KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk-~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |+ .++|+|||-|-+|.+.+..+.+
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~   25 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAK   25 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHH
Confidence            65 5999999999999999987765

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=86.38  E-value=0.18  Score=32.64  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=17.6

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ||.|||.|.||.+++-.+..
T Consensus         3 KI~IIGaG~VG~~~a~~l~~   22 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMAL   22 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHh
Confidence            78999999999999876655

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=86.12  E-value=0.15  Score=34.91  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=17.4

Q ss_pred             eeCEEEEeeccccHHHHHHHH
Q 034422            6 KIPSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~   26 (95)
                      --+|.|+|+|+||+.+++.+.
T Consensus        43 gk~vgIiG~G~IG~~va~~l~   63 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIME   63 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHH
T ss_pred             CCeEEEecccccchhHHHhHh
Confidence            346899999999999988764

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=86.10  E-value=0.4  Score=34.73  Aligned_cols=56  Identities=14%  Similarity=0.152  Sum_probs=39.2

Q ss_pred             eCEEEEeeccccHHHHHHHHhhhH-HHHhc-----------CCeEEEEEEEcCCcceecccCCCCCCCHHHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSCRS-LHANL-----------GVHLRVVGVSDSKSLVVASDVFTKEFNDNLLSEI   69 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~~~-~~~k~-----------Gi~lrVvgVaDSk~~l~~~d~~~~GLd~~~ll~~   69 (95)
                      |+|.|+|.|+|.+.++.=+..-+. ..+..           ..|+.|||=-|     ++++  .-|-|..+++..
T Consensus         3 IrV~ivG~GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~D-----Id~~--kvgk~l~eai~~   70 (275)
T d1vjpa1           3 VKVLILGQGYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYD-----VDRA--KIGKKLSEVVKQ   70 (275)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEE-----CBTT--TTTSBHHHHHHH
T ss_pred             eEEEEeeccHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEec-----CCcc--hhHHHHHHHHHh
Confidence            899999999999999998877433 22222           23788888777     4444  566677766543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.56  E-value=0.2  Score=31.62  Aligned_cols=20  Identities=5%  Similarity=0.066  Sum_probs=17.9

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .++|+|+|.+|+.+++.+.+
T Consensus         5 HiII~G~g~~g~~l~~~L~~   24 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ   24 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHH
Confidence            47999999999999998865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=85.55  E-value=0.23  Score=29.39  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=17.8

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|+++|+|.-|++.++.+.++
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~   27 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLAR   27 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT
T ss_pred             EEEEEeECHHHHHHHHHHHHC
Confidence            689999999999998776653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=85.32  E-value=0.17  Score=34.40  Aligned_cols=20  Identities=20%  Similarity=0.338  Sum_probs=17.2

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .|.|+|+|+||+.+++.+..
T Consensus        51 tvgIiG~G~IG~~va~~l~~   70 (193)
T d1mx3a1          51 TLGIIGLGRVGQAVALRAKA   70 (193)
T ss_dssp             EEEEECCSHHHHHHHHHHHT
T ss_pred             eEEEeccccccccceeeeec
Confidence            57999999999999987653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=85.12  E-value=0.22  Score=33.39  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             CEEEEeeccccHHHHHHHHhh
Q 034422            8 PSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      +|+++|.|.-|.+++.++.+.
T Consensus         9 KI~ViGaG~wGtAlA~~La~~   29 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKK   29 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT
T ss_pred             eEEEECCCHHHHHHHHHHHHc
Confidence            579999999999999999874

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=84.74  E-value=0.18  Score=35.72  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             ceeeCEEEEeeccccHHHHHHHHh
Q 034422            4 LKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      ++--+|+|-|||+||+.+++.+.+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~   60 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNT   60 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH
Confidence            344568999999999999988755

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.74  E-value=0.16  Score=38.53  Aligned_cols=23  Identities=26%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             eeeCEEEEeeccccHHHHHHHHh
Q 034422            5 KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         5 k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +.-+|+|+|+|++|.++++.+..
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~   58 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLAL   58 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHT
T ss_pred             hcCeEEEECCCHHHHHHHHHHHH
Confidence            45689999999999999998865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.61  E-value=0.2  Score=32.91  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.5

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      ++|.++|.|+.|.+++..+.++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~   22 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN   22 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC
Confidence            4789999999999999999863

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.44  E-value=0.19  Score=32.66  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             eCEEEEee-ccccHHHHHHHHhh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      ++|+|+|- |.||++|++++.+.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H   24 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEES   24 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcC
Confidence            58999998 99999999988653

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.28  E-value=0.28  Score=34.15  Aligned_cols=25  Identities=24%  Similarity=0.555  Sum_probs=21.0

Q ss_pred             CCcceeeCEEEEeeccccHHHHHHHHh
Q 034422            1 MATLKKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         1 ~~~mk~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      |-+||+|  +|||.|..|-+.+..+.+
T Consensus         1 m~~~KrV--aIIGaG~sGl~~A~~L~~   25 (335)
T d2gv8a1           1 LPTIRKI--AIIGAGPSGLVTAKALLA   25 (335)
T ss_dssp             CCSCCEE--EEECCSHHHHHHHHHHHT
T ss_pred             CCCCCeE--EEECcCHHHHHHHHHHHH
Confidence            7788875  999999999998876654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.02  E-value=0.22  Score=32.41  Aligned_cols=20  Identities=25%  Similarity=0.581  Sum_probs=17.2

Q ss_pred             CEEEEee-ccccHHHHHHHHh
Q 034422            8 PSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      ||.|+|. |.||++++-.+..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~   22 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN   22 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT
T ss_pred             eEEEECCCChHHHHHHHHHHh
Confidence            6899995 9999999977764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.81  E-value=0.43  Score=30.86  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=18.8

Q ss_pred             eeCEEEEeeccccHHHHHHHHh
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      .++|+|||-|-.|..++..+.+
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~   22 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQ   22 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHh
Confidence            3689999999999999887764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=83.59  E-value=0.29  Score=31.78  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.3

Q ss_pred             eCEEEEeeccccHHHHHHHHhh
Q 034422            7 IPSVLMGCGGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~~~   28 (95)
                      -+|.+||+|+.|.++++.|.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~   24 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH   24 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC
Confidence            3689999999999999998764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.36  E-value=0.35  Score=29.37  Aligned_cols=25  Identities=16%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             cc-eeeCEEEEeeccccHHHHHHHHh
Q 034422            3 TL-KKIPSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         3 ~m-k~I~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      || +.++|+|||-|--|...|..+++
T Consensus         1 ~m~~~yDviViGaG~~Gl~~A~~La~   26 (297)
T d2bcgg1           1 TIDTDYDVIVLGTGITECILSGLLSV   26 (297)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHH
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHH
Confidence            44 67999999999999998877654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.27  E-value=0.24  Score=33.61  Aligned_cols=20  Identities=20%  Similarity=0.360  Sum_probs=16.7

Q ss_pred             eCEEEEeeccccHHHHHHHH
Q 034422            7 IPSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         7 I~v~LiG~G~VG~~Ll~~I~   26 (95)
                      -+|.|+|+|+||+.+++.+.
T Consensus        46 ktvgIiG~G~IG~~va~~l~   65 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFK   65 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHH
T ss_pred             eeeeeeeccccccccccccc
Confidence            35899999999999987653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.90  E-value=0.24  Score=33.24  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=26.7

Q ss_pred             eeeCEEEEee-ccccHHHHHHHHhhhHHHHhcCCeEEEEEE
Q 034422            5 KKIPSVLMGC-GGVGRQLLQHIVSCRSLHANLGVHLRVVGV   44 (95)
Q Consensus         5 k~I~v~LiG~-G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgV   44 (95)
                      +.++|.|+|- |+||..++-.|.+..-+=..+-++++++-+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di   63 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS   63 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC
Confidence            5689999995 999999999887632221233444444433

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.90  E-value=0.21  Score=32.56  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=17.7

Q ss_pred             eCEEEEee-ccccHHHHHHHHh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~   27 (95)
                      +||.|+|. |+||++++-.+..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~   22 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAK   22 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHh
Confidence            36899995 9999999988765

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.49  E-value=0.27  Score=32.35  Aligned_cols=21  Identities=19%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             eCEEEEe-eccccHHHHHHHHh
Q 034422            7 IPSVLMG-CGGVGRQLLQHIVS   27 (95)
Q Consensus         7 I~v~LiG-~G~VG~~Ll~~I~~   27 (95)
                      ++|+|+| -|.||++|+++|.+
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~   23 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNR   23 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH
T ss_pred             cEEEEECcccHHHHHHHHHHHh
Confidence            6789999 79999999998876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.01  E-value=0.62  Score=28.09  Aligned_cols=32  Identities=22%  Similarity=0.387  Sum_probs=24.2

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEEc
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSD   46 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaD   46 (95)
                      +++++|-|.+|-+++..+.       +.|.+++++--.|
T Consensus        24 ~v~IiGgG~ig~E~A~~l~-------~~G~~Vtlve~~~   55 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYA-------NFGTKVTILEGAG   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHH-------HTTCEEEEEESSS
T ss_pred             eEEEECCCccceeeeeeec-------ccccEEEEEEecc
Confidence            6899999999999997664       4587776664333

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.69  E-value=0.35  Score=32.38  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=17.6

Q ss_pred             eeCEEEEeeccccHHHHHHHH
Q 034422            6 KIPSVLMGCGGVGRQLLQHIV   26 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~   26 (95)
                      --+|.|+|+|.||+.+++.+.
T Consensus        42 gk~vgIiG~G~IG~~va~~l~   62 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILA   62 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHH
T ss_pred             CceEEEeccccccccceeeee
Confidence            346899999999999997665

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.64  E-value=0.69  Score=28.58  Aligned_cols=28  Identities=14%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      +++|||-|.+|-+++..+.       +.|.+++|+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~-------~lG~~Vtii   49 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLA-------GIGLDVTVM   49 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHH-------HTTCCEEEE
T ss_pred             eEEEECCCccHHHHHHHHh-------hcCCeEEEE
Confidence            6899999999999998554       468888887

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.10  E-value=0.3  Score=31.79  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=18.3

Q ss_pred             eCEEEEee-ccccHHHHHHHHhh
Q 034422            7 IPSVLMGC-GGVGRQLLQHIVSC   28 (95)
Q Consensus         7 I~v~LiG~-G~VG~~Ll~~I~~~   28 (95)
                      +||.|+|. |.||++++-.|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~   23 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQ   23 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhC
Confidence            47899995 99999999777654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.92  E-value=0.71  Score=28.06  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=23.4

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEEEE
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVGVS   45 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVa   45 (95)
                      ++++||-|.+|-+++..+.       +.|.++.|+--.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~-------~~G~~Vtlve~~   53 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVIN-------GLGAKTHLFEMF   53 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHH-------HTTCEEEEECSS
T ss_pred             EEEEECCChhhHHHHHHhh-------ccccEEEEEeec
Confidence            4899999999999987653       458777666433

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.58  E-value=0.68  Score=28.47  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             CEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEEE
Q 034422            8 PSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVVG   43 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvg   43 (95)
                      +|+++|-|.+|-+++..+.       +.|.+++++-
T Consensus        24 ~v~IiGgG~iG~E~A~~l~-------~~g~~Vtlv~   52 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIK-------RLGIDSYIFA   52 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHH-------TTTCEEEEEC
T ss_pred             EEEEECCchHHHHHHHHHH-------hccccceeee
Confidence            5799999999999998775       4576666543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=80.44  E-value=0.68  Score=29.98  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=22.9

Q ss_pred             eeCEEEEeeccccHHHHHHHHhhhHHHHhcCCeEEEE
Q 034422            6 KIPSVLMGCGGVGRQLLQHIVSCRSLHANLGVHLRVV   42 (95)
Q Consensus         6 ~I~v~LiG~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVv   42 (95)
                      +-||+|||-|-.|..++..+.       ++|+++.|+
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~-------~~G~~v~v~   33 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLR-------DAGVDVDVY   33 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHH-------HTTCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHH-------HCCCCEEEE
Confidence            357899999999999987754       468765544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.42  E-value=0.36  Score=30.14  Aligned_cols=25  Identities=32%  Similarity=0.682  Sum_probs=21.0

Q ss_pred             ceeeCEEEEeeccccH-HHHHHHHhh
Q 034422            4 LKKIPSVLMGCGGVGR-QLLQHIVSC   28 (95)
Q Consensus         4 mk~I~v~LiG~G~VG~-~Ll~~I~~~   28 (95)
                      ||.++|+++|-.+||. +|++.+..+
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            8999999999999997 566777653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=0.73  Score=29.82  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             cceeeCEEEEe-eccccHHHHHHHHhhhHHHHhcCCeEEEEEEEcC
Q 034422            3 TLKKIPSVLMG-CGGVGRQLLQHIVSCRSLHANLGVHLRVVGVSDS   47 (95)
Q Consensus         3 ~mk~I~v~LiG-~G~VG~~Ll~~I~~~~~~~~k~Gi~lrVvgVaDS   47 (95)
                      +||+  |+|+| -|.+|+++++++.++       |.  +|++++.+
T Consensus         2 ~~kk--IlV~GatG~iG~~v~~~Ll~~-------g~--~V~~~~R~   36 (205)
T d1hdoa_           2 AVKK--IAIFGATGQTGLTTLAQAVQA-------GY--EVTVLVRD   36 (205)
T ss_dssp             CCCE--EEEESTTSHHHHHHHHHHHHT-------TC--EEEEEESC
T ss_pred             CCCE--EEEECCCCHHHHHHHHHHHHC-------cC--EEEEEEcC
Confidence            4555  59999 699999999988653       53  56666643

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=80.14  E-value=0.73  Score=27.80  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=17.5

Q ss_pred             CEEEEeeccccHHHHHHHHh
Q 034422            8 PSVLMGCGGVGRQLLQHIVS   27 (95)
Q Consensus         8 ~v~LiG~G~VG~~Ll~~I~~   27 (95)
                      +|+|||-|.+|-+++..|.+
T Consensus         4 rivIvGgG~~G~e~A~~l~~   23 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKL   23 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHH
T ss_pred             cEEEECccHHHHHHHHHHHH
Confidence            57999999999999988754