Citrus Sinensis ID: 034456

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Secondary Structure (PSIPRED)
ccEEEEEEEEEcccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAISTVSIHifgdvpssplvgvLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSvdkfsednedkvsrierskttplledekaettqacaep
Flexible Loop (DISEMBL)
maistvsihifgdvpssplVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFsednedkvsrierskttplledekaettqacaep
Low Complexity Region (SEG)
MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Disordered region (IsUnstruct)
****TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK***********************************
Disordered Region (DISOPRED)
***STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD************************************
Disordered Region (DISEMBL)
MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFS*********IERSKTTPLLE*************
Disordered Region (DISPRO)
*AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVD************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
Q9FLG8	484	Probable sphingolipid tra	yes	no	0.851	0.165	0.710	2e-27
F4IKF6	510	Probable sphingolipid tra	no	no	0.744	0.137	0.611	2e-19
Q6NMN6	492	Probable sphingolipid tra	no	no	0.627	0.119	0.661	5e-17

>sp|Q9FLG8|SPNS2_ARATH Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1

 Score =  120 bits (302), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/83 (71%), Positives = 71/83 (85%), Gaps = 3/83 (3%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STVSIHIFGDVPSSPLVGVLQD VNNWR T+L+LT +LFPAAAIW IGIFL+SVD++
Sbjct: 403 MAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRY 462

Query: 61  SEDNE-DKVSRIERSKTTPLLED 82
           +ED+E D V+R   S   PLL++
Sbjct: 463 NEDSEPDAVTR--ESTAAPLLQE 483

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.
Arabidopsis thaliana (taxid: 3702)

>sp|F4IKF6|SPNS3_ARATH Probable sphingolipid transporter spinster homolog 3 OS=Arabidopsis thaliana GN=At2g22730 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/72 (61%), Positives = 59/72 (81%), Gaps = 2/72 (2%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MAISTV+IHIFGDVPSSPLVG++QD +N+WR+T LILT+ILF AAAIWFIG    +++ F
Sbjct: 428 MAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAIWFIGKI--NLNSF 485

Query: 61  SEDNEDKVSRIE 72
             ++E  + +I+
Sbjct: 486 YSNDESFLVQIK 497

Probable sphingolipid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMN6|SPNS1_ARATH Probable sphingolipid transporter spinster homolog 1 OS=Arabidopsis thaliana GN=At5g65687 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK 59
           MA STV IHI GDVPSSPL G +QD + NWR++ LI+T+ILF AA IW IGIF++SVD+
Sbjct: 409 MASSTVLIHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDR 467

Probable sphingolipid transporter that plays a central role in endosomes and/or lysosomes storage.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
296088668	427	unnamed protein product [Vitis vinifera]	0.978	0.215	0.739	2e-34
359496250	466	PREDICTED: protein spinster homolog 1-li	0.978	0.197	0.739	4e-34
255554517	541	transporter, putative [Ricinus communis]	1.0	0.173	0.755	5e-34
356519493	530	PREDICTED: protein spinster homolog 1-li	0.957	0.169	0.711	6e-33
356527981	537	PREDICTED: protein spinster homolog 1-li	0.957	0.167	0.711	9e-33
356546730	532	PREDICTED: protein spinster homolog 1-li	0.936	0.165	0.727	5e-32
357476101	562	Spinster-like protein [Medicago truncatu	0.968	0.161	0.695	2e-31
356557609	496	PREDICTED: LOW QUALITY PROTEIN: protein	0.989	0.187	0.666	7e-30
357446115	525	Spinster-like protein [Medicago truncatu	0.989	0.177	0.634	1e-29
357446117	571	Spinster-like protein [Medicago truncatu	0.925	0.152	0.645	9e-29

>gi|296088668|emb|CBI38036.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/92 (73%), Positives = 81/92 (88%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IHIFGDVPSSPLVGVLQD VNNWRETALILT+ILF AA IWFIGIFLH VD+F
Sbjct: 336 MAMSTVAIHIFGDVPSSPLVGVLQDSVNNWRETALILTSILFLAAGIWFIGIFLHGVDRF 395

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACA 92
           +E++E   +RI++S TTPLLED+ A+T +A A
Sbjct: 396 NEESEHHATRIDKSNTTPLLEDKTADTAEASA 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496250|ref|XP_002264030.2| PREDICTED: protein spinster homolog 1-like [Vitis vinifera]

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/92 (73%), Positives = 81/92 (88%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IHIFGDVPSSPLVGVLQD VNNWRETALILT+ILF AA IWFIGIFLH VD+F
Sbjct: 375 MAMSTVAIHIFGDVPSSPLVGVLQDSVNNWRETALILTSILFLAAGIWFIGIFLHGVDRF 434

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACA 92
           +E++E   +RI++S TTPLLED+ A+T +A A
Sbjct: 435 NEESEHHATRIDKSNTTPLLEDKTADTAEASA 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554517|ref|XP_002518297.1| transporter, putative [Ricinus communis] gi|223542517|gb|EEF44057.1| transporter, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/94 (75%), Positives = 81/94 (86%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+S VSIHIFGDVPSSPLVGVLQD++NNWR TALILTAILFPAA IWFIGIFL SVDKF
Sbjct: 448 MAMSIVSIHIFGDVPSSPLVGVLQDKINNWRLTALILTAILFPAAFIWFIGIFLKSVDKF 507

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACAEP 94
           +E++E +V+  +RS TTPLLE + AETT   AEP
Sbjct: 508 NEESEHQVAVTDRSNTTPLLEGKTAETTATSAEP 541

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519493|ref|XP_003528407.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/90 (71%), Positives = 79/90 (87%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IHIFGDVPSSPLVG++QD++NNWR TALILT I FPAAAIWFIGIFL SVD+F
Sbjct: 435 MAMSTVAIHIFGDVPSSPLVGLMQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRF 494

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQA 90
           +ED+E +VS +ER+ T PLLE+  AET+ +
Sbjct: 495 NEDSEHEVSSVERTSTAPLLEENTAETSAS 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527981|ref|XP_003532584.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  144 bits (362), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 64/90 (71%), Positives = 79/90 (87%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IHIFGDVPSSPLVG++QD++NNWR TALILT I FPAAAIWFIGIFL SVD+F
Sbjct: 442 MAMSTVAIHIFGDVPSSPLVGLIQDKINNWRTTALILTTIFFPAAAIWFIGIFLPSVDRF 501

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQA 90
           +ED+E +VS +ER+ T PLLE+  AET+ +
Sbjct: 502 NEDSEHEVSSVERTSTAPLLEEGTAETSAS 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546730|ref|XP_003541776.1| PREDICTED: protein spinster homolog 1-like [Glycine max]

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/88 (72%), Positives = 76/88 (86%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV IHIFGDVPSSPLVGVLQD +NNWR TALILT+ILF AA IWFIGIFLH+VD+F
Sbjct: 438 MAMSTVVIHIFGDVPSSPLVGVLQDNINNWRTTALILTSILFLAAGIWFIGIFLHTVDRF 497

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETT 88
            ED+E +VS +ERS T PLL+++  ET+
Sbjct: 498 DEDSEHQVSNVERSNTMPLLQEKTGETS 525

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476101|ref|XP_003608336.1| Spinster-like protein [Medicago truncatula] gi|355509391|gb|AES90533.1| Spinster-like protein [Medicago truncatula]

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/92 (69%), Positives = 79/92 (85%), Gaps = 1/92 (1%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IHIFGDVPS+PLVGV+QD +NNWR TALILT I FPAAAIWFIGIFL+S DKF
Sbjct: 471 MAMSTVAIHIFGDVPSAPLVGVVQDHINNWRTTALILTTIFFPAAAIWFIGIFLNSKDKF 530

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAE-TTQAC 91
           +E++E +VSR+E + T PLLE++ AE  +Q C
Sbjct: 531 NEESEHQVSRVEGTTTAPLLEEKTAEPKSQEC 562

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557609|ref|XP_003547108.1| PREDICTED: LOW QUALITY PROTEIN: protein spinster homolog 1-like [Glycine max]

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/93 (66%), Positives = 76/93 (81%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+S V+IHIF DVPSSPLVGVLQD +NNWR TA ILT+ILF AA I FIGIFLHSVD+F
Sbjct: 402 MAMSAVAIHIFVDVPSSPLVGVLQDNINNWRTTAFILTSILFLAAGICFIGIFLHSVDRF 461

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACAE 93
            ED+E +VS +ERS T PLL+++  ET+ + A+
Sbjct: 462 DEDSEHQVSNVERSNTMPLLQEKTGETSASPAQ 494

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446115|ref|XP_003593335.1| Spinster-like protein [Medicago truncatula] gi|355482383|gb|AES63586.1| Spinster-like protein [Medicago truncatula]

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/93 (63%), Positives = 79/93 (84%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           +A+STV+IH+FGDVPSSPLVGVLQD +N+WR T LILT ILFPAA IWFIGIF+HS+D+F
Sbjct: 429 IAMSTVAIHLFGDVPSSPLVGVLQDSINSWRTTVLILTTILFPAAGIWFIGIFVHSMDRF 488

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACAE 93
            + +E +VS++ERS T PLL+++  ET+ + A+
Sbjct: 489 EDVSEHQVSKVERSCTIPLLQEKTGETSLSPAQ 521

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446117|ref|XP_003593336.1| Spinster-like protein [Medicago truncatula] gi|355482384|gb|AES63587.1| Spinster-like protein [Medicago truncatula]

 Score =  130 bits (327), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/93 (64%), Positives = 75/93 (80%), Gaps = 6/93 (6%)

Query: 1   MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
           MA+STV+IH+FGDVPSSPLVGVLQD +NNWR TALILT ILFPAA IWFIGIF+HSVD+F
Sbjct: 481 MAMSTVAIHLFGDVPSSPLVGVLQDSINNWRATALILTTILFPAAGIWFIGIFVHSVDRF 540

Query: 61  SEDNEDKVSRIERSKTTPLLEDEKAETTQACAE 93
            +D+E +V       T PLL+++  ET+ + A+
Sbjct: 541 EDDSEQQVC------TIPLLQEKTGETSISHAQ 567

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2179401	484	AT5G64500 "AT5G64500" [Arabido	0.851	0.165	0.710	2.2e-25
TAIR|locus:2066045	510	AT2G22730 "AT2G22730" [Arabido	0.648	0.119	0.718	1.4e-17
TAIR|locus:504954889	492	AT5G65687 "AT5G65687" [Arabido	0.797	0.152	0.594	2.7e-17

TAIR|locus:2179401 AT5G64500 "AT5G64500" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 59/83 (71%), Positives = 71/83 (85%)

Query:     1 MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDKF 60
             MA+STVSIHIFGDVPSSPLVGVLQD VNNWR T+L+LT +LFPAAAIW IGIFL+SVD++
Sbjct:   403 MAMSTVSIHIFGDVPSSPLVGVLQDYVNNWRVTSLVLTFVLFPAAAIWSIGIFLNSVDRY 462

Query:    61 SEDNE-DKVSRIERSKTTPLLED 82
             +ED+E D V+R   S   PLL++
Sbjct:   463 NEDSEPDAVTR--ESTAAPLLQE 483

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0046520 "sphingoid biosynthetic process" evidence=RCA

TAIR|locus:2066045 AT2G22730 "AT2G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 46/64 (71%), Positives = 55/64 (85%)

Query:     1 MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIG-IFLHSVDK 59
             MAISTV+IHIFGDVPSSPLVG++QD +N+WR+T LILT+ILF AAAIWFIG I L+S   
Sbjct:   428 MAISTVAIHIFGDVPSSPLVGIVQDHINSWRKTTLILTSILFLAAAIWFIGKINLNSF-- 485

Query:    60 FSED 63
             +S D
Sbjct:   486 YSND 489

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:504954889 AT5G65687 "AT5G65687" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 47/79 (59%), Positives = 60/79 (75%)

Query:     1 MAISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK- 59
             MA STV IHI GDVPSSPL G +QD + NWR++ LI+T+ILF AA IW IGIF++SVD+ 
Sbjct:   409 MASSTVLIHILGDVPSSPLYGKMQDHLKNWRKSTLIITSILFLAAIIWGIGIFMNSVDRS 468

Query:    60 --FSEDNEDKVSRIERSKT 76
                SED+E +  ++E SKT
Sbjct:   469 NEVSEDDEVEEDKLE-SKT 486


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  11 22  0.36    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  558 (59 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.92u 0.13s 11.05t   Elapsed:  00:00:00
  Total cpu time:  10.92u 0.13s 11.05t   Elapsed:  00:00:00
  Start:  Mon May 20 16:48:39 2013   End:  Mon May 20 16:48:39 2013

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLG8	SPNS2_ARATH	No assigned EC number	0.7108	0.8510	0.1652	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrOATP2 sugar transporter/spinster transmembrane protein (468 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.09
TIGR00805	633	oat sodium-independent organic anion transporter.	96.51
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.07
TIGR00892	455	2A0113 monocarboxylate transporter 1.	94.21
KOG3626	735	consensus Organic anion transporter [Secondary met	94.03
PRK15462	493	dipeptide/tripeptide permease D; Provisional	91.16
PRK09584	500	tppB putative tripeptide transporter permease; Rev	90.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	90.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	88.15
PRK03893	496	putative sialic acid transporter; Provisional	87.75
PRK03699	394	putative transporter; Provisional	87.6
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	87.11
PRK09528	420	lacY galactoside permease; Reviewed	87.02
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	86.63
PRK09705	393	cynX putative cyanate transporter; Provisional	86.14
PRK10207	489	dipeptide/tripeptide permease B; Provisional	85.51
PRK10133	438	L-fucose transporter; Provisional	84.78
PRK11663	434	regulatory protein UhpC; Provisional	83.54
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	83.44
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	83.4
KOG0569	485	consensus Permease of the major facilitator superf	82.96
TIGR00893	399	2A0114 d-galactonate transporter.	82.93
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	82.25
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	82.01
PRK05122	399	major facilitator superfamily transporter; Provisi	81.98
PRK09874	408	drug efflux system protein MdtG; Provisional	80.9

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.09  E-value=3.2e-11  Score=100.74  Aligned_cols=67  Identities=28%  Similarity=0.337  Sum_probs=58.7

Q ss_pred             ChhhHhHHHhcCCCCchhHHHHHHHhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Q 034456            1 MAISTVSIHIFGDVPSSPLVGVLQDRVNNWR----------ETALILTAILFPAAAIWFIGIFLHSVDKFSEDNEDK   67 (94)
Q Consensus         1 mA~~~~~iHllGDapSP~LiG~iSD~i~~lr----------~al~i~~~~l~la~~~~~~~a~~~~~dr~~~~~~~~   67 (94)
                      +|++++++|+|||+++|||+|++||++++++          .++..|.+.+..++..+....+....||++.....+
T Consensus       387 ~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~~~~~~~~~~~s~~~~a~~l~~a~~~~~~~~f~v~~d~~~~~~~~~  463 (493)
T KOG1330|consen  387 YALDTVFEHIFGDAASPYIVGILSDKLRGYKPAGGIDSVLQTSLRLCAALLAKALIWSIGSPFGVCCDRYSFLYFVQ  463 (493)
T ss_pred             HHHHHHHHHHhccCCCcceehhHHHHhhCCCccccccccccchhhhhHHHHHHHHHHhhccceeeeecccccccccc
Confidence            4789999999999999999999999997555          788999999999988877778888999999886444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=96.51  E-value=0.0073  Score=51.08  Aligned_cols=54  Identities=26%  Similarity=0.416  Sum_probs=39.9

Q ss_pred             ChhhHhHHHhcCCCCchhHHHHHHHhH--------------------HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 034456            1 MAISTVSIHIFGDVPSSPLVGVLQDRV--------------------NNWRETALILTAIL-FPAAAIWFIGIFL   54 (94)
Q Consensus         1 mA~~~~~iHllGDapSP~LiG~iSD~i--------------------~~lr~al~i~~~~l-~la~~~~~~~a~~   54 (94)
                      +++|.+++++||..|+|.+.|++-|+-                    +.+|+.+....+.+ +++.++++++.++
T Consensus       556 lg~~~~~~rllg~iP~pi~fG~~iD~sC~~W~~~~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  630 (633)
T TIGR00805       556 IGLQWLCMRVFATIPAPILFGLLIDVSCLHWQTLCCGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFILIL  630 (633)
T ss_pred             hhHHHHHHHHhcCCChhHHHhhhhhchhheeccccCCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            468999999999999999999999965                    23887776554444 4555555555544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.07  E-value=0.025  Score=44.74  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             HhHHHhcCCCCchhHHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDR-----------VNNWRETALILTAILFPAAAIWF   49 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~-----------i~~lr~al~i~~~~l~la~~~~~   49 (94)
                      ....-++|++.+|+++|++.|.           ..+|+.+++++....+++.++++
T Consensus       391 ~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        391 GTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            3455667999999999999992           23499999988888888766654

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=94.21  E-value=0.027  Score=44.76  Aligned_cols=47  Identities=21%  Similarity=0.319  Sum_probs=40.0

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH   55 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~   55 (94)
                      .-+|=..+|++.|++.|..++++..++++..+++++++++.++..+.
T Consensus       378 ~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~~~~~~  424 (455)
T TIGR00892       378 ECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAIGNYIN  424 (455)
T ss_pred             HHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHHHHHHH
Confidence            45678889999999999987799999999999998888777776655

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.03  E-value=0.28  Score=43.60  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.9

Q ss_pred             ChhhHhHHHhcCCCCchhHHHHHHHhH
Q 034456            1 MAISTVSIHIFGDVPSSPLVGVLQDRV   27 (94)
Q Consensus         1 mA~~~~~iHllGDapSP~LiG~iSD~i   27 (94)
                      |++|.+++-+||=-|||.+.|++-|.-
T Consensus       624 lG~~~~~irllg~IPsPIifG~~ID~t  650 (735)
T KOG3626|consen  624 LGFQWMLIRLLGFIPSPIIFGAVIDTT  650 (735)
T ss_pred             hHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence            578999999999999999999999954

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=91.16  E-value=0.33  Score=40.58  Aligned_cols=52  Identities=12%  Similarity=0.169  Sum_probs=40.9

Q ss_pred             hhhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034456            2 AISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLH   55 (94)
Q Consensus         2 A~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~   55 (94)
                      ++.-..++ +|-..+|++.|++.++.+ ||.+|.++...++++.+.|+.+....
T Consensus       141 ~i~Y~~~n-lG~~iap~l~g~L~~~~G-w~~~F~iaaigm~l~li~~~~~~~~l  192 (493)
T PRK15462        141 SLMYAAGN-VGSIIAPIACGYAQEEYS-WAMGFGLAAVGMIAGLVIFLCGNRHF  192 (493)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHHhhhC-hHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            34555666 588999999999999887 99999998888888877776655443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=90.94  E-value=0.29  Score=39.92  Aligned_cols=48  Identities=8%  Similarity=-0.033  Sum_probs=37.8

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSV   57 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~~~   57 (94)
                      .-+|=+.+|.+.|++.|+.+ ||++++++...++++.+.|+....+..+
T Consensus       159 ~~iG~~~gp~i~g~l~~~~g-~~~~F~i~~i~~~i~~i~~~~~~~~~~~  206 (500)
T PRK09584        159 INIGSFFSMLATPWLAAKYG-WSVAFALSVVGMLITVVNFAFCQRWVKQ  206 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            34567789999999999887 9999999988888887777666555443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=90.68  E-value=0.32  Score=38.32  Aligned_cols=38  Identities=21%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   47 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~   47 (94)
                      .+-|-..+|++.|++.|+.+ ++.+++++....+++.++
T Consensus       393 ~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        393 YLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             HHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence            33334457999999999988 999999888877776544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=88.15  E-value=0.6  Score=38.64  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456           15 PSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus        15 pSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      .+|.++|++.|..++.|++++...+.++++.+++
T Consensus       431 lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll  464 (477)
T PF11700_consen  431 LGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL  464 (477)
T ss_pred             HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            4799999999999889999998888888877765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03893 putative sialic acid transporter; Provisional

Probab=87.75  E-value=0.71  Score=36.07  Aligned_cols=36  Identities=14%  Similarity=0.124  Sum_probs=25.5

Q ss_pred             hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456           10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   46 (94)
Q Consensus        10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~   46 (94)
                      -+|...+|.+.|++.|+++ ++.++++......+.++
T Consensus       412 ~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~~~~  447 (496)
T PRK03893        412 ALGGALAPILGALIAQRLD-LGTALASLSFSLTFVVI  447 (496)
T ss_pred             hHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHH
Confidence            3677889999999999987 77776555444444333

>PRK03699 putative transporter; Provisional

Probab=87.60  E-value=0.66  Score=35.62  Aligned_cols=47  Identities=6%  Similarity=0.072  Sum_probs=37.2

Q ss_pred             HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL   54 (94)
Q Consensus         7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~   54 (94)
                      ..+-+|-..+|++.|++.|+.+ ++.++++...+.+++.+.+++..++
T Consensus       336 ~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  382 (394)
T PRK03699        336 TCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCILLGFV  382 (394)
T ss_pred             HhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999877 8999888888877777665555554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=87.11  E-value=1  Score=35.27  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             hhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456            3 ISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   47 (94)
Q Consensus         3 ~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~   47 (94)
                      +......+.|.+.+|++.|++.|+.+ +..+++++..+.+++.+.
T Consensus       385 ~~~~~~~~gg~~~gp~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~  428 (438)
T TIGR00712       385 FTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIL  428 (438)
T ss_pred             hhchHHHhhhhhhcchhHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence            34445566678899999999999887 888887777666665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09528 lacY galactoside permease; Reviewed

Probab=87.02  E-value=0.69  Score=35.72  Aligned_cols=40  Identities=33%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456            8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus         8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      .+-+|-+.+|++.|++.|..+ +|.++.++..+.+++.+++
T Consensus       360 ~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        360 AKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHH
Confidence            466788899999999999987 9999988777666555443

>TIGR00889 2A0110 nucleoside transporter

Probab=86.63  E-value=0.81  Score=36.07  Aligned_cols=41  Identities=20%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             HHHhcCCCCchhHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHH
Q 034456            7 SIHIFGDVPSSPLVGVLQDRVN-----NWRETALILTAILFPAAAI   47 (94)
Q Consensus         7 ~iHllGDapSP~LiG~iSD~i~-----~lr~al~i~~~~l~la~~~   47 (94)
                      ..+-+|-+.+|++.|++.|+.+     +|+.+++++....+++++.
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l  397 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVL  397 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHH
Confidence            4577888999999999999974     3898888777776665543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=86.14  E-value=0.98  Score=34.90  Aligned_cols=35  Identities=14%  Similarity=-0.004  Sum_probs=28.4

Q ss_pred             CCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456           14 VPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus        14 apSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      ..+|++.|++.|+.+++..+++++.+.++++.++.
T Consensus       343 ~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK09705        343 GLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIIT  377 (393)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            34899999999999888888888888777665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=85.51  E-value=0.77  Score=37.56  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=33.8

Q ss_pred             cCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456           11 FGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL   54 (94)
Q Consensus        11 lGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~   54 (94)
                      +|-+.+|.+.|++.++.+ ||+++++++..++++.+.|+.+...
T Consensus       154 ig~~~g~~l~g~l~~~~g-w~~~F~i~~i~~~~~~~~~~~~~~~  196 (489)
T PRK10207        154 IGSLISLSLAPVIADKFG-YSVTYNLCGAGLIIALLVYFACRGM  196 (489)
T ss_pred             HHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHHHHHHHcchh
Confidence            466778999999999987 9999999887777776666655433

>PRK10133 L-fucose transporter; Provisional

Probab=84.78  E-value=1.9  Score=34.37  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=26.9

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTA   39 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~   39 (94)
                      ++....+|.+..|+++|+++|+.+++|.++++...
T Consensus       386 l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~  420 (438)
T PRK10133        386 FIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_pred             HHhHHhccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            34456789999999999999987557888864433

>PRK11663 regulatory protein UhpC; Provisional

Probab=83.54  E-value=1.3  Score=34.75  Aligned_cols=39  Identities=10%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      .-+|=+.+|+++|++.|+.+ |+..+.+...+.+++++.+
T Consensus       382 ~~~g~~~~p~~~g~l~~~~g-~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        382 AYLGAALSGYPLAKVLEIWH-WTGFFVVISIAAGISALLL  420 (434)
T ss_pred             HHHHHHHhcccHHHHHHhcc-cHHHHHHHHHHHHHHHHHH
Confidence            44566789999999999987 8888877777766665433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=83.44  E-value=1.3  Score=32.77  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALI   36 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i   36 (94)
                      +.....+|.+.+.++.|+++||++ -|..+.+
T Consensus        42 ~~~~~~~~~~~~~~~~g~l~dr~g-~r~~~~~   72 (366)
T TIGR00886        42 LVAVPVLAGAVLRIILGFLVDKFG-PRYTTTL   72 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhC-chHHHHH
Confidence            456788899999999999999997 3444433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=83.40  E-value=0.91  Score=32.99  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=24.2

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILT   38 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~   38 (94)
                      ++.+..+|.+.+.++.|.++|+++ -|+.+.++.
T Consensus        43 ~~s~~~~~~~~~~~~~G~l~d~~G-~r~~~~~~~   75 (377)
T TIGR00890        43 WFTLLLIGLAMSMPVGGLLADKFG-PRAVAMLGG   75 (377)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHcC-ccchhHHhH
Confidence            456778888899999999999997 344444333

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=82.96  E-value=1.5  Score=37.00  Aligned_cols=50  Identities=24%  Similarity=0.231  Sum_probs=43.4

Q ss_pred             hHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            4 STVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFL   54 (94)
Q Consensus         4 ~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~   54 (94)
                      .++.++.+|-+.+.++.|++.|+.+ -+.+++++.+..++++++.....++
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~G-RK~~l~~~~~l~~~~~~~~~~s~~~  113 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFG-RKNALLLSNLLAVLAALLMGLSKSA  113 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3678899999999999999999998 4789999999999999988777654

>TIGR00893 2A0114 d-galactonate transporter

Probab=82.93  E-value=1.5  Score=31.71  Aligned_cols=41  Identities=10%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF   49 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~   49 (94)
                      .-+|-+.+|++.|++.|..++++..+.++....+++.+.++
T Consensus       356 ~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       356 GNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            36788899999999999887788888877777777666543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=82.25  E-value=2.2  Score=35.89  Aligned_cols=39  Identities=26%  Similarity=0.372  Sum_probs=26.9

Q ss_pred             hHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 034456            6 VSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAA   45 (94)
Q Consensus         6 ~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~   45 (94)
                      ++.-..|.+.=|++.|+++|+.+ .+..+.+.|..+.+-.
T Consensus       364 l~maivGGAiiP~l~G~i~d~~g-~~~~~~~~pllc~lyV  402 (422)
T COG0738         364 LVMAIVGGAIIPPLQGVIADMFG-IQLTFLIVPLLCYLYV  402 (422)
T ss_pred             eeeheecchHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence            34456899999999999999998 4555444444444333

>TIGR01272 gluP glucose/galactose transporter

Probab=82.01  E-value=1.8  Score=33.01  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=24.3

Q ss_pred             HHHhcCCCCchhHHHHHHHhHHHHHHHHHH
Q 034456            7 SIHIFGDVPSSPLVGVLQDRVNNWRETALI   36 (94)
Q Consensus         7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i   36 (94)
                      ..-.+|.+..|+++|+++|+.+ ++.++++
T Consensus       271 ~~~~~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       271 CLAIVGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             HHHHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence            4445899999999999999988 8888763

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=81.98  E-value=1.6  Score=33.14  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=28.3

Q ss_pred             hcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456           10 IFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   47 (94)
Q Consensus        10 llGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~   47 (94)
                      -+|-+.+|++.|++.|+.+ ++.+++++..+.+++.++
T Consensus       348 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~  384 (399)
T PRK05122        348 DLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLAL  384 (399)
T ss_pred             HHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHH
Confidence            3455677899999999887 899888877776665443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=80.90  E-value=2.9  Score=31.47  Aligned_cols=39  Identities=13%  Similarity=0.217  Sum_probs=31.6

Q ss_pred             HhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456            9 HIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus         9 HllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      .-+|-+.+|++.|++.|..+ ++..+.++....++++++.
T Consensus       356 ~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        356 RDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             HHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Confidence            45677888999999999887 8998888887777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	93.32
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	84.24
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	81.68
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	81.14
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	80.67

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=93.32  E-value=0.033  Score=40.63  Aligned_cols=47  Identities=17%  Similarity=0.249  Sum_probs=36.5

Q ss_pred             hhHhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            3 ISTVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFI   50 (94)
Q Consensus         3 ~~~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~   50 (94)
                      +..+...++|-+.+|++.|++.|+.+ ++..++++..+.+++.++++.
T Consensus       386 ~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          386 FTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHH
Confidence            34444555588899999999999887 888888888888877776654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=84.24  E-value=1.2  Score=32.26  Aligned_cols=43  Identities=16%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIW   48 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~   48 (94)
                      +.....+|.+.+.++.|+++||++ -|..+.+..++..++.+++
T Consensus        66 ~~~~~~~~~~i~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~~  108 (438)
T 3o7q_A           66 IQSAFYFGYFIIPIPAGILMKKLS-YKAGIITGLFLYALGAALF  108 (438)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhc-chHHHHHHHHHHHHHHHHH
Confidence            456677788889999999999997 4555555555544444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=81.68  E-value=0.93  Score=32.86  Aligned_cols=42  Identities=17%  Similarity=-0.045  Sum_probs=29.3

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAI   47 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~   47 (94)
                      +..+..+|.+.+.++.|+++|+++ -|..+.++.++..++.++
T Consensus        67 ~~~~~~~~~~~~~~~~G~l~dr~g-~r~~l~~~~~~~~~~~~~  108 (451)
T 1pw4_A           67 ALSGISIAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLF  108 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHH
Confidence            456677888888999999999997 455555555544444433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=81.14  E-value=0.93  Score=33.64  Aligned_cols=41  Identities=12%  Similarity=0.213  Sum_probs=31.9

Q ss_pred             HHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            8 IHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWF   49 (94)
Q Consensus         8 iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~   49 (94)
                      ..-+|-..+|++.|++.++.+ ||..++++....+++.++++
T Consensus       154 ~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          154 GINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            345677788999999999887 99999988776666665544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=80.67  E-value=0.72  Score=34.14  Aligned_cols=39  Identities=18%  Similarity=0.326  Sum_probs=29.8

Q ss_pred             HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 034456            7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAA   46 (94)
Q Consensus         7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~   46 (94)
                      .+-.+|=+.++.+.|+++|+++ -|..++++.++..++++
T Consensus        62 s~~~~G~~iG~~~~G~laDr~G-Rk~~l~~~~~l~~i~~i  100 (491)
T 4gc0_A           62 ASALIGCIIGGALGGYCSNRFG-RRDSLKIAAVLFFISGV  100 (491)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence            3456677788999999999998 47777777776666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	94.18
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	91.39
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	86.59

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=94.18  E-value=0.0095  Score=41.21  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFI   50 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~   50 (94)
                      .+...+.|-..+|++.|++.|+.+ ++..++++....+++.+++..
T Consensus       385 ~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         385 GLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHH
Confidence            344566677778999999999987 888888777776666665443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=91.39  E-value=0.038  Score=36.50  Aligned_cols=49  Identities=16%  Similarity=0.203  Sum_probs=34.6

Q ss_pred             HHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 034456            7 SIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPAAAIWFIGIFLHSVDK   59 (94)
Q Consensus         7 ~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la~~~~~~~a~~~~~dr   59 (94)
                      ..+-+|-+.+|++.|++.|+.+ ++.+++++..+.++++++   ..++.++++
T Consensus       356 ~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~---~~~~l~~~~  404 (417)
T d1pv7a_         356 FFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLI---SVFTLSGPG  404 (417)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH---HHHHSCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHH---HHHhhcCCC
Confidence            3456788889999999999998 888887776665555443   334444444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=86.59  E-value=0.11  Score=34.11  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=26.7

Q ss_pred             HhHHHhcCCCCchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 034456            5 TVSIHIFGDVPSSPLVGVLQDRVNNWRETALILTAILFPA   44 (94)
Q Consensus         5 ~~~iHllGDapSP~LiG~iSD~i~~lr~al~i~~~~l~la   44 (94)
                      ++.+..++.....++.|+++||+++ |..++++.....++
T Consensus        48 i~s~~~l~~~i~~~~~G~l~Dr~gr-r~~l~~~~~~~~~~   86 (417)
T d1pv7a_          48 IFAAISLFSLLFQPLFGLLSDKLGL-RKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTT-CTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHH
Confidence            4556777888889999999999973 54444444333333