Citrus Sinensis ID: 034469

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccEEEcEEEccccEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEccEEcccccEEEEEcccccc
Coil and Loop (DISEMBL)
masskgggmekMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAStalhdlslrpqgakmLVPLTaslyvpgtldDARKVLVDIGTENDG
Flexible Loop (DISEMBL)
masskgggmekMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG
Low Complexity Region (SEG)
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG
Disordered region (IsUnstruct)
************************************************************GAKMLVPLTASLYVPGTLDDARKVLVDI******
Disordered Region (DISOPRED)
***********MS***LKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA*************LVPLTASLYVPGTLDDARKVLVDIGTE***
Disordered Region (DISEMBL)
************SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG
Disordered Region (DISPRO)
********MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
P57742	151	Probable prefoldin subuni	yes	no	0.946	0.589	0.797	6e-33
Q54V55	160	Probable prefoldin subuni	yes	no	0.829	0.487	0.405	2e-10
Q99471	154	Prefoldin subunit 5 OS=Ho	yes	no	0.851	0.519	0.375	4e-10
Q8HYI9	154	Prefoldin subunit 5 OS=Bo	yes	no	0.851	0.519	0.375	5e-10
Q9WU28	154	Prefoldin subunit 5 OS=Mu	yes	no	0.851	0.519	0.375	5e-10
Q5RAY0	154	Prefoldin subunit 5 OS=Po	yes	no	0.851	0.519	0.375	5e-10
Q9VCZ8	168	Probable prefoldin subuni	yes	no	0.851	0.476	0.362	3e-09
Q21993	152	Probable prefoldin subuni	yes	no	0.914	0.565	0.348	4e-09
A8XPL7	154	Probable prefoldin subuni	N/A	no	0.914	0.558	0.337	7e-09
Q04493	163	Prefoldin subunit 5 OS=Sa	yes	no	0.904	0.521	0.369	7e-09

>sp|P57742|PFD5_ARATH Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290 PE=1 SV=1

 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 80/89 (89%)

Query: 2  ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
          +SS  G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRPQG
Sbjct: 3  SSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRPQG 62

Query: 62 AKMLVPLTASLYVPGTLDDARKVLVDIGT 90
           KMLVPLTASLYVPGTLD+A KVLVDIGT
Sbjct: 63 KKMLVPLTASLYVPGTLDEADKVLVDIGT 91

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54V55|PFD5_DICDI Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5 PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
          +S+EQL+ ++EQ + E+  L +S+  ++ A+++   A  A+  L     G  MLVPLT+S
Sbjct: 14 LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSS 72

Query: 72 LYVPGTLDDARKVLVDIGT 90
          +Y+PG ++   KVLVDIGT
Sbjct: 73 IYLPGKINSNEKVLVDIGT 91

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
          ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9  ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71 SLYVPGTLDDARKVLVDIGT 90
          S+YVPG L D   VL+D+GT
Sbjct: 69 SMYVPGKLHDVEHVLIDVGT 88

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Homo sapiens (taxid: 9606)

>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
          ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L    +G ++LVPLT+
Sbjct: 9  ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTS 68

Query: 71 SLYVPGTLDDARKVLVDIGT 90
          S+YVPG L D   VL+D+GT
Sbjct: 69 SMYVPGKLHDVEHVLIDVGT 88

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Bos taurus (taxid: 9913)

>sp|Q9WU28|PFD5_MOUSE Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
          ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9  ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71 SLYVPGTLDDARKVLVDIGT 90
          S+YVPG L D   VL+D+GT
Sbjct: 69 SMYVPGKLHDVEHVLIDVGT 88

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Mus musculus (taxid: 10090)

>sp|Q5RAY0|PFD5_PONAB Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
          ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct: 9  ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query: 71 SLYVPGTLDDARKVLVDIGT 90
          S+YVPG L D   VL+D+GT
Sbjct: 69 SMYVPGKLHDVEHVLIDVGT 88

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins. Represses the transcriptional activity of MYC.

Pongo abelii (taxid: 9601)

>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 49/80 (61%)

Query: 11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
          K+S EQL  IK++ + E+  +QDSL+ +    ++   +  AL       +  ++LVPLT+
Sbjct: 18 KLSPEQLIQIKQEFEQEITNVQDSLSTLHGCQAKYAGSKEALGTFQPNWENRQILVPLTS 77

Query: 71 SLYVPGTLDDARKVLVDIGT 90
          S+YVPG + D  + ++DIGT
Sbjct: 78 SMYVPGRVKDLNRFVIDIGT 97

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=pfd-5 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query: 5  KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
          KG  + ++S++QL  +++  + E+N  Q+S N ++   +R E + +AL D+ +   G   
Sbjct: 6  KGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTA 65

Query: 65 LVPLTASLYVPGTLDDARKVLVDIGT 90
          L+PL+ SLY+   L D  K LV+IGT
Sbjct: 66 LIPLSESLYIRAELSDPSKHLVEIGT 91

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XPL7|PFD5_CAEBR Probable prefoldin subunit 5 OS=Caenorhabditis briggsae GN=pfd-5 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 51/86 (59%)

Query: 5  KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
          +G  + ++S++QL  +++  + E+   QDS N ++   SR E + +AL D+ +   G   
Sbjct: 6  RGVPLSELSLQQLGELQKNCEQELTFFQDSFNALKALLSRNEKSISALEDVKVGTAGHTA 65

Query: 65 LVPLTASLYVPGTLDDARKVLVDIGT 90
          L+PL+ SLY+   L D  K +V+IGT
Sbjct: 66 LIPLSESLYIRAELSDPNKHMVEIGT 91

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q04493|PFD5_YEAST Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM5 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 7/92 (7%)

Query: 3  SSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ-- 60
          SS+   + K++ EQL A+K+Q D E+     SL  +  A  +    +  + D+    Q  
Sbjct: 2  SSQKIDLTKLNPEQLNAVKQQFDQELQHFTQSLQALTMAKGKF---TECIDDIKTVSQAG 58

Query: 61 --GAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
            G K+LVP +ASLY+PG + D +K +VDIGT
Sbjct: 59 NEGQKLLVPASASLYIPGKIVDNKKFMVDIGT 90

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
255559796	180	prefoldin subunit, putative [Ricinus com	0.957	0.5	0.875	2e-38
224083880	158	predicted protein [Populus trichocarpa]	0.957	0.569	0.8	8e-36
154254839	118	putative c-myc binding protein [Olea eur	0.936	0.745	0.793	7e-34
224096514	158	predicted protein [Populus trichocarpa]	0.946	0.563	0.786	1e-33
449464306	160	PREDICTED: probable prefoldin subunit 5-	0.957	0.562	0.735	2e-33
225462560	151	PREDICTED: probable prefoldin subunit 5	0.957	0.596	0.817	2e-33
118482380	158	unknown [Populus trichocarpa]	0.946	0.563	0.786	3e-33
218184785	121	hypothetical protein OsI_34105 [Oryza sa	0.957	0.743	0.777	4e-32
110289298	124	prefoldin subunit 5, putative, expressed	0.957	0.725	0.777	5e-32
16905198	150	putative c-myc binding protein [Oryza sa	0.957	0.6	0.777	6e-32

>gi|255559796|ref|XP_002520917.1| prefoldin subunit, putative [Ricinus communis] gi|223539883|gb|EEF41462.1| prefoldin subunit, putative [Ricinus communis]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/96 (87%), Positives = 87/96 (90%), Gaps = 6/96 (6%)

Query: 1  MASSKGGG------MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD 54
          MASSKGGG      MEKMSVEQLKA+KEQTDLEVNLLQDSLNNIRTAT+RLE ASTALHD
Sbjct: 1  MASSKGGGAARIGEMEKMSVEQLKALKEQTDLEVNLLQDSLNNIRTATTRLEIASTALHD 60

Query: 55 LSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          LSLRPQG KMLVPLTASLYVPGTLD+A KVLVDIGT
Sbjct: 61 LSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDIGT 96

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083880|ref|XP_002307156.1| predicted protein [Populus trichocarpa] gi|222856605|gb|EEE94152.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/100 (80%), Positives = 84/100 (84%), Gaps = 10/100 (10%)

Query: 1   MASSKGGG----------MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST 50
           MASSKGG           MEKMSVEQLKA+KEQTDLEVNLLQDSLNNI+TAT RLE  +T
Sbjct: 1   MASSKGGATSPAVLRASEMEKMSVEQLKALKEQTDLEVNLLQDSLNNIKTATGRLEITAT 60

Query: 51  ALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
           +LHDLSLRPQG KMLVPLTASLYVPGTLDDA KVLVDIGT
Sbjct: 61  SLHDLSLRPQGKKMLVPLTASLYVPGTLDDADKVLVDIGT 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|154254839|gb|ABS72002.1| putative c-myc binding protein [Olea europaea]

 Score =  147 bits (371), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/92 (79%), Positives = 81/92 (88%), Gaps = 4/92 (4%)

Query: 3  SSKGGG----MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR 58
          +S+G G    MEKMS+EQL+A+KEQ DLE NL QDSLNNIRTAT+RLE ASTALHDLSLR
Sbjct: 2  ASRGAGVGLEMEKMSLEQLRALKEQADLEFNLFQDSLNNIRTATARLEIASTALHDLSLR 61

Query: 59 PQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          PQG KMLVPLTASLYVPG+LDDA KVLVD+GT
Sbjct: 62 PQGKKMLVPLTASLYVPGSLDDADKVLVDVGT 93

Source: Olea europaea

Species: Olea europaea

Genus: Olea

Family: Oleaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096514|ref|XP_002310641.1| predicted protein [Populus trichocarpa] gi|222853544|gb|EEE91091.1| predicted protein [Populus trichocarpa]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 81/89 (91%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           A+++   MEKMS+EQLKA+KEQTDLE NLLQDSLNNI+TAT RLE A+T+L+DL+LRPQG
Sbjct: 12  AAARASDMEKMSIEQLKAVKEQTDLEFNLLQDSLNNIKTATGRLEVAATSLNDLALRPQG 71

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGT 90
            KMLVPLTASLYVPGTLDDA +VLVDIGT
Sbjct: 72  KKMLVPLTASLYVPGTLDDADRVLVDIGT 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464306|ref|XP_004149870.1| PREDICTED: probable prefoldin subunit 5-like [Cucumis sativus] gi|449484948|ref|XP_004157026.1| PREDICTED: probable prefoldin subunit 5-like [Cucumis sativus]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 82/102 (80%), Gaps = 12/102 (11%)

Query: 1   MASSKGGG------------MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESA 48
           MAS KGG             +EKMSVEQL+A KEQTD+EVNLL DSLNNIRTATSRL+ A
Sbjct: 1   MASRKGGSSGGEGVRSLELELEKMSVEQLRAFKEQTDMEVNLLHDSLNNIRTATSRLDIA 60

Query: 49  STALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
           S ALHDLSLRPQG +MLVPLTASLYVPGTLD+A KVLVD+GT
Sbjct: 61  SAALHDLSLRPQGKRMLVPLTASLYVPGTLDEADKVLVDVGT 102

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462560|ref|XP_002267649.1| PREDICTED: probable prefoldin subunit 5 [Vitis vinifera] gi|147795534|emb|CAN63324.1| hypothetical protein VITISV_018866 [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 80/93 (86%), Gaps = 3/93 (3%)

Query: 1  MASSKG---GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL 57
          MAS  G     MEKMS+E LKA+KEQTDLEVNLLQDSLNNIRTATSRLE AS AL+DLSL
Sbjct: 1  MASKAGIRVPEMEKMSIEHLKALKEQTDLEVNLLQDSLNNIRTATSRLEIASAALNDLSL 60

Query: 58 RPQGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          RPQG KMLVPLTASLYVPG LDDA KVLVD+GT
Sbjct: 61 RPQGKKMLVPLTASLYVPGKLDDADKVLVDVGT 93

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482380|gb|ABK93113.1| unknown [Populus trichocarpa]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 80/89 (89%)

Query: 2   ASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQG 61
           A+++   MEKMS+EQLKA+KEQTDLE NLLQDSLNNI TAT RLE A+T+L+DL+LRPQG
Sbjct: 12  AAARASDMEKMSIEQLKAVKEQTDLEFNLLQDSLNNIETATGRLEVAATSLNDLALRPQG 71

Query: 62  AKMLVPLTASLYVPGTLDDARKVLVDIGT 90
            KMLVPLTASLYVPGTLDDA +VLVDIGT
Sbjct: 72  KKMLVPLTASLYVPGTLDDADRVLVDIGT 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184785|gb|EEC67212.1| hypothetical protein OsI_34105 [Oryza sativa Indica Group] gi|222613043|gb|EEE51175.1| hypothetical protein OsJ_31962 [Oryza sativa Japonica Group]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 79/90 (87%)

Query: 1  MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
          MAS     +EK+SVEQLKA+KEQTDLEVNLLQDSL  IR+A +RLE+AS ALHDLSLRP+
Sbjct: 1  MASPPRIEVEKLSVEQLKALKEQTDLEVNLLQDSLTKIRSAATRLENASAALHDLSLRPK 60

Query: 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          G KMLVPLTASLYVPGTLDD+ KVLVD+GT
Sbjct: 61 GKKMLVPLTASLYVPGTLDDSEKVLVDVGT 90

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110289298|gb|ABG66156.1| prefoldin subunit 5, putative, expressed [Oryza sativa Japonica Group]

 Score =  141 bits (356), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 79/90 (87%)

Query: 1  MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
          MAS     +EK+SVEQLKA+KEQTDLEVNLLQDSL  IR+A +RLE+AS ALHDLSLRP+
Sbjct: 1  MASPPRIEVEKLSVEQLKALKEQTDLEVNLLQDSLTKIRSAATRLENASAALHDLSLRPK 60

Query: 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          G KMLVPLTASLYVPGTLDD+ KVLVD+GT
Sbjct: 61 GKKMLVPLTASLYVPGTLDDSEKVLVDVGT 90

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16905198|gb|AAL31068.1|AC090120_14 putative c-myc binding protein [Oryza sativa Japonica Group] gi|31432776|gb|AAP54369.1| prefoldin subunit 5, putative, expressed [Oryza sativa Japonica Group] gi|215693783|dbj|BAG88982.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  141 bits (355), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/90 (77%), Positives = 79/90 (87%)

Query: 1  MASSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQ 60
          MAS     +EK+SVEQLKA+KEQTDLEVNLLQDSL  IR+A +RLE+AS ALHDLSLRP+
Sbjct: 1  MASPPRIEVEKLSVEQLKALKEQTDLEVNLLQDSLTKIRSAATRLENASAALHDLSLRPK 60

Query: 61 GAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
          G KMLVPLTASLYVPGTLDD+ KVLVD+GT
Sbjct: 61 GKKMLVPLTASLYVPGTLDDSEKVLVDVGT 90

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
TAIR|locus:2166811	151	PFD5 "prefoldin 5" [Arabidopsi	0.957	0.596	0.802	6e-32
UNIPROTKB|E2RC92	154	PFDN5 "Uncharacterized protein	0.851	0.519	0.387	3.9e-12
DICTYBASE|DDB_G0280607	160	pfdn5 "prefoldin subunit 5" [D	0.829	0.487	0.405	1.3e-11
ZFIN|ZDB-GENE-030131-6858	153	pfdn5 "prefoldin 5" [Danio rer	0.872	0.535	0.378	2.2e-11
UNIPROTKB|Q8HYI9	154	PFDN5 "Prefoldin subunit 5" [B	0.851	0.519	0.375	2.8e-11
UNIPROTKB|Q99471	154	PFDN5 "Prefoldin subunit 5" [H	0.851	0.519	0.375	2.8e-11
UNIPROTKB|F1SFR2	160	PFDN5 "Uncharacterized protein	0.851	0.5	0.375	2.8e-11
MGI|MGI:1928753	154	Pfdn5 "prefoldin 5" [Mus muscu	0.851	0.519	0.375	2.8e-11
RGD|1311436	154	Pfdn5 "prefoldin subunit 5" [R	0.851	0.519	0.375	2.8e-11
WB|WBGene00020112	152	pfd-5 [Caenorhabditis elegans	0.914	0.565	0.348	3.2e-10

TAIR|locus:2166811 PFD5 "prefoldin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 73/91 (80%), Positives = 81/91 (89%)

Query:     1 MASSKGGG-MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP 59
             MASS   G MEKM ++QLKA+KEQ DLEVNLLQDSLNNIRTAT RL++A+ AL+DLSLRP
Sbjct:     1 MASSSSRGEMEKMGIDQLKALKEQADLEVNLLQDSLNNIRTATVRLDAAAAALNDLSLRP 60

Query:    60 QGAKMLVPLTASLYVPGTLDDARKVLVDIGT 90
             QG KMLVPLTASLYVPGTLD+A KVLVDIGT
Sbjct:    61 QGKKMLVPLTASLYVPGTLDEADKVLVDIGT 91

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E2RC92 PFDN5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 31/80 (38%), Positives = 50/80 (62%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   LH L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLHVLNKNNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    69 SMYVPGKLHDVEHVLIDVGT 88

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

DICTYBASE|DDB_G0280607 pfdn5 "prefoldin subunit 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 32/79 (40%), Positives = 52/79 (65%)

Query:    12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTAS 71
             +S+EQL+ ++EQ + E+  L +S+  ++ A+++   A  A+  L     G  MLVPLT+S
Sbjct:    14 LSLEQLQMVREQVEAEIQQLSESIQQLKHASNKYIEAKEAMGGLK-GTDGKDMLVPLTSS 72

Query:    72 LYVPGTLDDARKVLVDIGT 90
             +Y+PG ++   KVLVDIGT
Sbjct:    73 IYLPGKINSNEKVLVDIGT 91

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA;ISS

ZFIN|ZDB-GENE-030131-6858 pfdn5 "prefoldin 5" [Danio rerio (taxid:7955)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:     9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPL 68
             + ++S+ QL+ +K Q D E   L  S+  ++   ++   A  +L+ L+   +G ++LVPL
Sbjct:     5 LTELSLPQLEGLKTQLDQETEFLSSSIAQLKVVQTKYVEAKDSLNVLNKSNEGKELLVPL 64

Query:    69 TASLYVPGTLDDARKVLVDIGT 90
             T+S+YVPG L D   VLVD+GT
Sbjct:    65 TSSMYVPGKLHDVDHVLVDVGT 86

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q8HYI9 PFDN5 "Prefoldin subunit 5" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/80 (37%), Positives = 49/80 (61%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L    +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    69 SMYVPGKLHDVEHVLIDVGT 88

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|Q99471 PFDN5 "Prefoldin subunit 5" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    69 SMYVPGKLHDVEHVLIDVGT 88

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|F1SFR2 PFDN5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:    15 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 74

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    75 SMYVPGKLHDVEHVLIDVGT 94

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

MGI|MGI:1928753 Pfdn5 "prefoldin 5" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    69 SMYVPGKLHDVEHVLIDVGT 88

GO:0005634 "nucleus" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

RGD|1311436 Pfdn5 "prefoldin subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 30/80 (37%), Positives = 50/80 (62%)

Query:    11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
             ++++ QL+ +K Q D EV  L  S+  ++   ++   A   L+ L+   +G ++LVPLT+
Sbjct:     9 ELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTS 68

Query:    71 SLYVPGTLDDARKVLVDIGT 90
             S+YVPG L D   VL+D+GT
Sbjct:    69 SMYVPGKLHDVEHVLIDVGT 88

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA;ISO

WB|WBGene00020112 pfd-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 30/86 (34%), Positives = 52/86 (60%)

Query:     5 KGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM 64
             KG  + ++S++QL  +++  + E+N  Q+S N ++   +R E + +AL D+ +   G   
Sbjct:     6 KGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAGHTA 65

Query:    65 LVPLTASLYVPGTLDDARKVLVDIGT 90
             L+PL+ SLY+   L D  K LV+IGT
Sbjct:    66 LIPLSESLYIRAELSDPSKHLVEIGT 91

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P57742	PFD5_ARATH	No assigned EC number	0.7977	0.9468	0.5894	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00050283	hypothetical protein (158 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_IV4438	hypothetical protein (125 aa)				•	•	•	•		0.785
	estExt_fgenesh4_pm.C_LG_VI0254	SubName- Full=Putative uncharacterized protein; (129 aa)				•	•	•	•		0.459
	grail3.0068014301	SubName- Full=Putative uncharacterized protein; (145 aa)				•	•	•	•		0.456
	eugene3.00051398	hypothetical protein (70 aa)			•						0.431
	estExt_fgenesh4_pm.C_LG_IX0111	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•					0.430
	eugene3.00081447	hypothetical protein (145 aa)				•	•	•	•		0.425
	estExt_fgenesh4_pm.C_LG_X0573	hypothetical protein (192 aa)				•	•	•	•		0.424
	estExt_fgenesh4_pg.C_LG_VIII0908	hypothetical protein (196 aa)				•	•	•	•		0.423
	eugene3.00060477	SubName- Full=Putative uncharacterized protein; (270 aa)			•						0.420
	estExt_fgenesh4_pm.C_660004	SubName- Full=Putative uncharacterized protein; (114 aa)			•	•					0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	94
TIGR00293	126	TIGR00293, TIGR00293, prefoldin, archaeal alpha su	2e-18
cd00584	129	cd00584, Prefoldin_alpha, Prefoldin alpha subunit;	7e-16
pfam02996	120	pfam02996, Prefoldin, Prefoldin subunit	9e-14
cd00890	129	cd00890, Prefoldin, Prefoldin is a hexameric molec	1e-10
COG1730	145	COG1730, GIM5, Predicted prefoldin, molecular chap	2e-08
PRK03947	140	PRK03947, PRK03947, prefoldin subunit alpha; Revie	6e-06

>gnl|CDD|129394 TIGR00293, TIGR00293, prefoldin, archaeal alpha subunit/eukaryotic subunit 5

 Score = 73.5 bits (181), Expect = 2e-18
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
          ++QL A  +    +V  LQ  +  +R   + LE+A   L DL    +G + LVP+ A  +
Sbjct: 1  LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSF 59

Query: 74 VPGTLDDARKVLVDIGT 90
          V   + D  KVLV IG+
Sbjct: 60 VKAKVKDTDKVLVSIGS 76

Members of this protein family, rich in coiled coil regions, are molecular chaperones in the class of the prefoldin (GimC) alpha subunit. Prefoldin is a hexamer of two alpha and four beta subunits. This protein appears universal in the archaea but is restricted to Aquifex aeolicus among bacteria so far. Eukaryotes have several related proteins; only prefoldin subunit 5, which appeared the most similar to archaeal prefoldin alpha, is included in this model. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil [Protein fate, Protein folding and stabilization]. Length = 126

>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 66.9 bits (164), Expect = 7e-16
 Identities = 28/77 (36%), Positives = 39/77 (50%)

Query: 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
          +EQL A  +    E+  LQ  L  +  A +  E A   L  L    +G + LVPL A ++
Sbjct: 1  LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVF 60

Query: 74 VPGTLDDARKVLVDIGT 90
          V   + D  KVLVD+GT
Sbjct: 61 VKAKVKDTDKVLVDLGT 77

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|202504 pfam02996, Prefoldin, Prefoldin subunit

 Score = 61.1 bits (149), Expect = 9e-14
 Identities = 26/67 (38%), Positives = 34/67 (50%)

Query: 25 DLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKV 84
            E+  LQ  L  +R A   LE     L  L    +G ++LVPL A L+V G + D  KV
Sbjct: 2  KQEIESLQAELARLREAIEELEKTLETLKTLKKEDEGKEVLVPLGAGLFVKGEVIDTDKV 61

Query: 85 LVDIGTE 91
          LVD+G  
Sbjct: 62 LVDLGAG 68

This family comprises of several prefoldin subunits. The biogenesis of the cytoskeletal proteins actin and tubulin involves interaction of nascent chains of each of the two proteins with the oligomeric protein prefoldin (PFD) and their subsequent transfer to the cytosolic chaperonin CCT (chaperonin containing TCP-1). Electron microscopy shows that eukaryotic PFD, which has a similar structure to its archaeal counterpart, interacts with unfolded actin along the tips of its projecting arms. In its PFD-bound state, actin seems to acquire a conformation similar to that adopted when it is bound to CCT. Length = 120

>gnl|CDD|238453 cd00890, Prefoldin, Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

 Score = 53.5 bits (129), Expect = 1e-10
 Identities = 25/77 (32%), Positives = 39/77 (50%)

Query: 14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
          +++L A  +Q   ++  LQ  L  +    +  E A   L  L    +  ++LVPL A L+
Sbjct: 1  LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLF 60

Query: 74 VPGTLDDARKVLVDIGT 90
          V   + D  KVLVD+GT
Sbjct: 61 VKAEVKDDDKVLVDLGT 77

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils. Length = 129

>gnl|CDD|224644 COG1730, GIM5, Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 24/78 (30%), Positives = 42/78 (53%)

Query: 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
           +E+L A  +    ++  LQ  +  +  A S L++A   L +L    +G ++LVP+ A L
Sbjct: 7  ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGL 66

Query: 73 YVPGTLDDARKVLVDIGT 90
          +V   + D  KV+V IG+
Sbjct: 67 FVKAKVKDMDKVIVSIGS 84

Length = 145

>gnl|CDD|235179 PRK03947, PRK03947, prefoldin subunit alpha; Reviewed

 Score = 41.4 bits (98), Expect = 6e-06
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 10/79 (12%)

Query: 14 VEQLKAIKEQTDL---EVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA 70
            QL+A++ Q +    ++  LQ S+N + TA   LE   +         +G + LVP+ A
Sbjct: 12 AAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSK-------GEGKETLVPIGA 64

Query: 71 SLYVPGTLDDARKVLVDIG 89
            +V   + D  KV+V +G
Sbjct: 65 GSFVKAKVKDKDKVIVSLG 83

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	100.0
PRK01203	130	prefoldin subunit alpha; Provisional	99.94
PRK14011	144	prefoldin subunit alpha; Provisional	99.94
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.92
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.89
PRK03947	140	prefoldin subunit alpha; Reviewed	99.87
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.86
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.8
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	99.76
KOG3130	514	consensus Uncharacterized conserved protein [Funct	97.65
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	97.22
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	96.66
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	96.02
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	95.35
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	94.72
PRK03947	140	prefoldin subunit alpha; Reviewed	94.53
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	94.52
PRK14011	144	prefoldin subunit alpha; Provisional	93.92
PRK01203	130	prefoldin subunit alpha; Provisional	93.42
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	93.26
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	92.92
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	91.83
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	89.88
PRK09343	121	prefoldin subunit beta; Provisional	86.79
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	86.17
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	85.58
KOG3047	157	consensus Predicted transcriptional regulator UXT	84.66
PF14282	106	FlxA: FlxA-like protein	84.37
PF04568	100	IATP: Mitochondrial ATPase inhibitor, IATP; InterP	82.73
PF08700	87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	82.64
PRK09343	121	prefoldin subunit beta; Provisional	82.58

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-37  Score=217.36  Aligned_cols=93  Identities=53%  Similarity=0.748  Sum_probs=90.1

Q ss_pred             CC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEec
Q 034469            1 MA-SSKGGGMEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLD   79 (94)
Q Consensus         1 m~-~~~~i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~   79 (94)
                      |+ .+++||++.|+|+||.++++|+++|+++|++|+++|+.++.||.+|++||+.+++.++|+++|||||+|+||||++.
T Consensus         1 ma~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~   80 (153)
T KOG3048|consen    1 MAEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLS   80 (153)
T ss_pred             CCCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceec
Confidence            44 35889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeeEEecCCCcc
Q 034469           80 DARKVLVDIGTEND   93 (94)
Q Consensus        80 d~~kVlVdIGtGy~   93 (94)
                      |++|||||||||||
T Consensus        81 d~~k~lVDIGTGYy   94 (153)
T KOG3048|consen   81 DNSKFLVDIGTGYY   94 (153)
T ss_pred             cccceeEeccCceE
Confidence            99999999999998

>PRK01203 prefoldin subunit alpha; Provisional

Probab=99.94  E-value=2.4e-26  Score=158.97  Aligned_cols=79  Identities=11%  Similarity=0.278  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG   94 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~   94 (94)
                      +++.+..+.+++|++.|+++++.|+.++++|.+|+++|+.++ .++++++|||||+|+||||++.|+++||||||||||.
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~-~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~V   81 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNE-LDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYI   81 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEE
Confidence            567888899999999999999999999999999999999976 4567999999999999999999999999999999983

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.94  E-value=4e-26  Score=160.06  Aligned_cols=78  Identities=18%  Similarity=0.304  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND   93 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~   93 (94)
                      ++++...-++|.+|+++|+++++.|+.++++|.+|+++|+.++   .++++|||||+|+||||+++|+|+||||||||||
T Consensus         5 lq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~---~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~   81 (144)
T PRK14011          5 LQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLK---TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIY   81 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeE
Confidence            5666666799999999999999999999999999999999876   4799999999999999999999999999999998


Q ss_pred             C
Q 034469           94 G   94 (94)
Q Consensus        94 ~   94 (94)
                      .
T Consensus        82 V   82 (144)
T PRK14011         82 L   82 (144)
T ss_pred             E
Confidence            3

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.3e-24  Score=151.40  Aligned_cols=85  Identities=28%  Similarity=0.427  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecC
Q 034469           10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIG   89 (94)
Q Consensus        10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIG   89 (94)
                      ++.++++|.+..+.|+++++.|++++..|+.++++|+.|+++|+.++...+|+|+|||+|+++||+|+++|+++|||+||
T Consensus         4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG   83 (145)
T COG1730           4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG   83 (145)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Confidence            45789999999999999999999999999999999999999999999866689999999999999999999999999999


Q ss_pred             CCccC
Q 034469           90 TENDG   94 (94)
Q Consensus        90 tGy~~   94 (94)
                      +|||+
T Consensus        84 sg~~a   88 (145)
T COG1730          84 SGYYA   88 (145)
T ss_pred             Cceee
Confidence            99995

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.89  E-value=1.4e-22  Score=136.87  Aligned_cols=80  Identities=33%  Similarity=0.431  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND   93 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~   93 (94)
                      +++|.+..++|+++++.|++++..|..++.+|..++++|+.+++. ++.++|||||+++||||++.++++|+|+||+|||
T Consensus         1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~   79 (126)
T TIGR00293         1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYY   79 (126)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEE
Confidence            478999999999999999999999999999999999999999865 7899999999999999999999999999999998


Q ss_pred             C
Q 034469           94 G   94 (94)
Q Consensus        94 ~   94 (94)
                      .
T Consensus        80 v   80 (126)
T TIGR00293        80 V   80 (126)
T ss_pred             E
Confidence            3

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.87  E-value=2.3e-21  Score=133.27  Aligned_cols=82  Identities=26%  Similarity=0.481  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN   92 (94)
Q Consensus        13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy   92 (94)
                      .+++|....++|+++++.|++++..|..++.++..|+++|+.+++..++.++|||||+++||+|++.++++|+|+|||||
T Consensus         7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~   86 (140)
T PRK03947          7 ELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGY   86 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCE
Confidence            46888899999999999999999999999999999999999998766789999999999999999999999999999999


Q ss_pred             cC
Q 034469           93 DG   94 (94)
Q Consensus        93 ~~   94 (94)
                      |.
T Consensus        87 ~v   88 (140)
T PRK03947         87 SA   88 (140)
T ss_pred             EE
Confidence            83

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.86  E-value=5e-21  Score=129.75  Aligned_cols=81  Identities=35%  Similarity=0.463  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND   93 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~   93 (94)
                      +++|..+.++++++++.+++++..|+..+.+|..++++|+.+++...+.++|||||+++|+||++.++++|+|+||+|||
T Consensus         1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~   80 (129)
T cd00584           1 LEQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYY   80 (129)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEE
Confidence            47899999999999999999999999999999999999999987667899999999999999999999999999999998


Q ss_pred             C
Q 034469           94 G   94 (94)
Q Consensus        94 ~   94 (94)
                      .
T Consensus        81 v   81 (129)
T cd00584          81 V   81 (129)
T ss_pred             E
Confidence            3

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.80  E-value=8.3e-19  Score=117.49  Aligned_cols=81  Identities=31%  Similarity=0.444  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND   93 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~   93 (94)
                      +++|....++|+++++.|++++..|+..+.+|..++++|+.+.....+.++++|+|+++||||++.++++|+|+||+|||
T Consensus         1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~   80 (129)
T cd00890           1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY   80 (129)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Confidence            47899999999999999999999999999999999999999988777889999999999999999999999999999998


Q ss_pred             C
Q 034469           94 G   94 (94)
Q Consensus        94 ~   94 (94)
                      .
T Consensus        81 v   81 (129)
T cd00890          81 V   81 (129)
T ss_pred             E
Confidence            3

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=99.76  E-value=8e-19  Score=116.84  Aligned_cols=71  Identities=28%  Similarity=0.479  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469           24 TDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG   94 (94)
Q Consensus        24 l~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~   94 (94)
                      |+++++.+++.+..|+..+.+|..++++|+.|+..+.+.++|||+|+++||||++.++++|+|+||+|||+
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~v   71 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYV   71 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEE
Confidence            45678899999999999999999999999999875778999999999999999999999999999999984

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG3130 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=9.4e-05  Score=59.99  Aligned_cols=56  Identities=20%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCccC
Q 034469           38 IRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTENDG   94 (94)
Q Consensus        38 L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~~   94 (94)
                      -+.....|...++-++.+. .+=.-+||||||.-.|+||+++-++.|.|..|.||||
T Consensus        22 ~~~v~~dye~~~erl~~~~-kkLs~~Imvpig~~a~mpG~lVhTNevtv~~g~nyf~   77 (514)
T KOG3130|consen   22 RKKVDNDYEALRERLSTLP-KKLSYNIMVPIGPFAFMPGKLVHTNEVTVLLGDNYFA   77 (514)
T ss_pred             HHHHhhhHHHHHHHHHHhh-hhcccceeeecccccccccceeeechhhhhhccchHh
Confidence            3444566777777777764 3345799999999999999999999999999999996

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.22  E-value=0.00052  Score=45.54  Aligned_cols=68  Identities=26%  Similarity=0.370  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-------------CCCCeEEEecCCCeeeeeEecc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR-------------PQGAKMLVPLTASLYVPGTLDD   80 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~-------------~~~~eiLVPLt~slyV~gkl~d   80 (94)
                      .++|.+..+.+.++++.++..+..++.+...+.....+.......             .++.+++|+||.+.||.-.+.+
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e   87 (129)
T cd00890           8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence            467777778999999999999999998888777766555443211             1567899999999999987765


Q ss_pred             C
Q 034469           81 A   81 (94)
Q Consensus        81 ~   81 (94)
                      .
T Consensus        88 A   88 (129)
T cd00890          88 A   88 (129)
T ss_pred             H
Confidence            4

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=96.66  E-value=0.0043  Score=41.68  Aligned_cols=68  Identities=25%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhccC-------CCCCCeEEEecCCCeeeeeEecc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST------ALHDLSL-------RPQGAKMLVPLTASLYVPGTLDD   80 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~------al~~l~~-------~~~~~eiLVPLt~slyV~gkl~d   80 (94)
                      .++|.+..+.++++++.++..+..+..+...+..-..      ++-.+..       -.+..+++||||++.||.-.+.+
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE~~~~e   87 (129)
T cd00584           8 LQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVEKDLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEEecHHH
Confidence            4677777788999999999999998877766655543      1111211       13457899999999999987765


Q ss_pred             C
Q 034469           81 A   81 (94)
Q Consensus        81 ~   81 (94)
                      .
T Consensus        88 A   88 (129)
T cd00584          88 A   88 (129)
T ss_pred             H
Confidence            4

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=96.02  E-value=0.044  Score=38.70  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccC----------CCCCCeEEEecCCCeeeeeE
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALH---DLSL----------RPQGAKMLVPLTASLYVPGT   77 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~---~l~~----------~~~~~eiLVPLt~slyV~gk   77 (94)
                      ++.+.+.-+.|++++..|..++..++.+...+...+..=+   .|=|          -....+++||||+|.||.=.
T Consensus        15 lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~   91 (145)
T COG1730          15 LQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKS   91 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeec
Confidence            4667777788999999999999999998877666543331   1211          13347999999999999644

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=95.35  E-value=0.044  Score=36.56  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTA--LHDLSL----------RPQGAKMLVPLTASLYVPGTLD   79 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~a--l~~l~~----------~~~~~eiLVPLt~slyV~gkl~   79 (94)
                      .++|.+..+.+++.+..+..++..++.+..-+..-...  .+.+=|          -.+...|+|+||++.||-=.+.
T Consensus         8 ~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~   85 (126)
T TIGR00293         8 LQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAE   85 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHH
Confidence            35666666777777777777777777665444222211  111111          1234678888888888865443

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=94.72  E-value=0.11  Score=34.42  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeee
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP   75 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~   75 (94)
                      ++++..-.++++++++.+..+++.|.....+...+++.|+.+.   ++..++-++|. +||+
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~---~d~~vyk~VG~-vlv~   62 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP---DDTPVYKSVGN-LLVK   62 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchhHHHhch-hhhe
Confidence            4666677788999999999999998877777666666666654   57789888887 5554

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=94.53  E-value=0.33  Score=33.01  Aligned_cols=66  Identities=27%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST---ALHDLSL----------RPQGAKMLVPLTASLYVPGTLD   79 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~---al~~l~~----------~~~~~eiLVPLt~slyV~gkl~   79 (94)
                      .+++.+..+.+.+++..|...+..++.+...+..-..   ..+.+-+          -.+...++|+||++.||.=.+.
T Consensus        15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~vE~~~~   93 (140)
T PRK03947         15 LQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSAEKDLD   93 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEEEecHH
Confidence            4566666677777777777777777766644432221   0011111          1234577888888888765544

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.72  Score=33.86  Aligned_cols=76  Identities=16%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---CCCeEEEecCCCeeeeeEeccCCeeEEecCC
Q 034469           17 LKAIKEQTDLE---VNLLQDSLNNIRTATSRLESASTALHDLSLRP---QGAKMLVPLTASLYVPGTLDDARKVLVDIGT   90 (94)
Q Consensus        17 L~~l~~ql~qe---i~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~---~~~eiLVPLt~slyV~gkl~d~~kVlVdIGt   90 (94)
                      |..+++++.+-   -..+-+....|+.-+-.+..+.+.+..|...+   +.-+..+-|..++|.++.+.++++|-+=+|+
T Consensus        39 l~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGA  118 (187)
T KOG3313|consen   39 LKKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGA  118 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecc
Confidence            44555444443   23445556666666677777777777776432   2358899999999999999999999999998


Q ss_pred             Cc
Q 034469           91 EN   92 (94)
Q Consensus        91 Gy   92 (94)
                      ..
T Consensus       119 nV  120 (187)
T KOG3313|consen  119 NV  120 (187)
T ss_pred             ee
Confidence            63

>PRK14011 prefoldin subunit alpha; Provisional

Probab=93.92  E-value=0.19  Score=35.28  Aligned_cols=66  Identities=11%  Similarity=0.108  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------CCCCCeEEEecCCCeeeeeEec
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSL----------RPQGAKMLVPLTASLYVPGTLD   79 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~----------~~~~~eiLVPLt~slyV~gkl~   79 (94)
                      ++++.+.-+.|.++++.|+.....+..++..+......-+-|=|          -.+...+||++|++.||.=.+.
T Consensus        12 l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VEk~~~   87 (144)
T PRK14011         12 LEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLEKDVS   87 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEEecHH
Confidence            56677777888888888888888888777665533221111211          1234678999999999865443

>PRK01203 prefoldin subunit alpha; Provisional

Probab=93.42  E-value=0.25  Score=34.32  Aligned_cols=66  Identities=14%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccC-------CCCCCeEEEecCCCeeeeeEec
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAS-----TALHDLSL-------RPQGAKMLVPLTASLYVPGTLD   79 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~-----~al~~l~~-------~~~~~eiLVPLt~slyV~gkl~   79 (94)
                      ++.+.+..+.|++|++.|+.....+..++..+....     +.|=-|.+       -.+...++|.+|+|.||.=.+.
T Consensus         9 ~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK~~e   86 (130)
T PRK01203          9 LNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAEERE   86 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEecHH
Confidence            355667778899999999999999988776654421     11111111       1345689999999999975443

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=93.26  E-value=1.3  Score=28.00  Aligned_cols=58  Identities=14%  Similarity=0.280  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeee
Q 034469           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPG   76 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~g   76 (94)
                      +++..-.+.+.+++..+..++..|.....++..+.+.|+.+.   ++..++..+|. +||+-
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~---~~~~~y~~vG~-~fv~~   58 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLD---DDRKVYKSVGK-MFVKQ   58 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---TT-EEEEEETT-EEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcchhHHHHhH-HHHHh
Confidence            345556677888888888888888877776666666666654   45788888855 56653

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=92.92  E-value=0.29  Score=31.97  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeee
Q 034469           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP   75 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~   75 (94)
                      +++..-.++++++++.+..+++.|.....+...+.+.|..+.   ++..++-++|. +||+
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~---~d~~vy~~VG~-vfv~   58 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA---DDAEVYKLVGN-VLVK   58 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcchHHHHhhh-HHhh
Confidence            456677789999999999999999888777777777777665   46677777776 4444

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=91.83  E-value=1.1  Score=27.25  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=26.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469            7 GGMEKMSVEQLKAIKEQTDLEVNLLQDSLNN   37 (94)
Q Consensus         7 i~l~~L~~~qL~~l~~ql~qei~~l~~s~~~   37 (94)
                      =||+.||+.+|..-...|++||..+.+.+..
T Consensus        16 ~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   16 EDLSLLSVEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             CCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998888877755

The function of this family is unknown.

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=89.88  E-value=1.9  Score=28.11  Aligned_cols=59  Identities=25%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccC----------CCCCCeEEEecCCCeeeeeEecc
Q 034469           22 EQTDLEVNLLQDSLNNIRTATSRLESAST---ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDD   80 (94)
Q Consensus        22 ~ql~qei~~l~~s~~~L~~a~~~~~~~~~---al~~l~~----------~~~~~eiLVPLt~slyV~gkl~d   80 (94)
                      +.++++++.|+..+..+..+...+..-..   ..+.+-|          -.+...++|+||++.||.=.+.+
T Consensus         6 ~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~e   77 (120)
T PF02996_consen    6 ENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEE   77 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHH
Confidence            45556666666666655555544333222   2222211          13457899999999999765543

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK09343 prefoldin subunit beta; Provisional

Probab=86.79  E-value=2.5  Score=28.53  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCC
Q 034469           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTA   70 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~   70 (94)
                      +++..-.++++++++.+..+.+.|.....+...+.+-|+.|   +++..|+-++|.
T Consensus        10 q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L---~~d~~VYk~VG~   62 (121)
T PRK09343         10 QAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKL---PDDTPIYKIVGN   62 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCcchhHHHhhH
Confidence            44445557777777777777777776555555555555444   456677665553

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=86.17  E-value=5.4  Score=28.08  Aligned_cols=58  Identities=16%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             CCCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 034469            1 MASSKGGGMEK---MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLR   58 (94)
Q Consensus         1 m~~~~~i~l~~---L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~   58 (94)
                      ||..+++..+-   .+-+.+..-.++|.+|.+.|.+.+..|.+-..++.-.+++|+.+.+.
T Consensus         1 m~~a~~~~~~~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~   61 (140)
T KOG4098|consen    1 MAAAQSGSGTAKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPT   61 (140)
T ss_pred             CchhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChh
Confidence            55444443332   33356677779999999999999999999999999999999888653

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=85.58  E-value=1.7  Score=29.78  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeE
Q 034469           11 KMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKM   64 (94)
Q Consensus        11 ~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~ei   64 (94)
                      ++| +++.++-.++++=-+.++.-+.+.+...+.+.++..|++.|....++.+|
T Consensus         3 ~lp-p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~v   55 (119)
T COG1382           3 QLP-PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPV   55 (119)
T ss_pred             CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence            344 55555554444444444444555555556677777777777655555544

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=84.66  E-value=4.8  Score=28.52  Aligned_cols=51  Identities=8%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhcc-CCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCcc
Q 034469           43 SRLESASTALHDLS-LRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEND   93 (94)
Q Consensus        43 ~~~~~~~~al~~l~-~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy~   93 (94)
                      ++|..-+-+++.|. ...+..+.-+-||-..|+.-.+-|+.+|+|-+|-|+|
T Consensus        47 aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~ff   98 (157)
T KOG3047|consen   47 AEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFF   98 (157)
T ss_pred             HHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeeccee
Confidence            45555555555543 2333456678899999999999999999999999987

>PF14282 FlxA: FlxA-like protein

Probab=84.37  E-value=4.5  Score=26.68  Aligned_cols=36  Identities=11%  Similarity=0.218  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469           10 EKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL   45 (94)
Q Consensus        10 ~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~   45 (94)
                      ..+++++-....+.|+++|+.|+.+|.+|+.-+.+-
T Consensus        42 ~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~   77 (106)
T PF14282_consen   42 SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ   77 (106)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999999999999988766543

>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface

Probab=82.73  E-value=4.3  Score=26.99  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=25.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTAT   42 (94)
Q Consensus        13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~   42 (94)
                      .-+||..|++++++|+.+-.+.|..|+..+
T Consensus        70 EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I   99 (100)
T PF04568_consen   70 EKEQLKKLKEKLKEEIEHHRKEIDELEKHI   99 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            358999999999999999999998887654

It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi

Probab=82.64  E-value=8.8  Score=23.51  Aligned_cols=48  Identities=10%  Similarity=0.285  Sum_probs=36.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcc
Q 034469            9 MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTAT-SRLESASTALHDLS   56 (94)
Q Consensus         9 l~~L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~-~~~~~~~~al~~l~   56 (94)
                      +.+.++.++..+.++|..++......++.+=... .+|..+-+.|..++
T Consensus        16 l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~   64 (87)
T PF08700_consen   16 LKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSME   64 (87)
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999988765433 56666666666654

Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].

>PRK09343 prefoldin subunit beta; Provisional

Probab=82.58  E-value=10  Score=25.53  Aligned_cols=12  Identities=25%  Similarity=0.351  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHh
Q 034469           43 SRLESASTALHD   54 (94)
Q Consensus        43 ~~~~~~~~al~~   54 (94)
                      ..++++..+++.
T Consensus        35 ~q~~e~~~~~~E   46 (121)
T PRK09343         35 LELREINKALEE   46 (121)
T ss_pred             HHHHHHHHHHHH
Confidence            333344444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	9e-15
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii} Length = 151

 Score = 64.3 bits (156), Expect = 9e-15
 Identities = 15/83 (18%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 9  MEKMSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLS-LRPQGAKMLVP 67
               +E+L    +    +  +L  +L  +  A + +++    L +L  +  +  ++LVP
Sbjct: 6  QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVP 65

Query: 68 LTASLYVPGTLDDARKVLVDIGT 90
          + A  ++ G + D    +V +G+
Sbjct: 66 IGAGSFLKGVIVDKNNAIVSVGS 88

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 Length = 133

 Score = 63.4 bits (154), Expect = 1e-14
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
          ++ ++ A       +V L+Q  +  +R   S LE     L D+  +  G++ LVP+ A  
Sbjct: 2  ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVPVGAGS 60

Query: 73 YVPGTLDDARKVLVDIGT 90
          ++   L D  +V++ +G 
Sbjct: 61 FIKAELKDTSEVIMSVGA 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 35.6 bits (81), Expect = 9e-04
 Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 28/92 (30%)

Query: 14  VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLY 73
           +E L+ +  Q D       D  +NI+    R+ S    L  L                L 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYEN-------CLL 248

Query: 74  VPGTLDDAR------------KVLVDIGTEND 93
           V   L + +            K+L+   T   
Sbjct: 249 V---LLNVQNAKAWNAFNLSCKILL---TTRF 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.9
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.87
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	96.7
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	96.13
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	92.1
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	91.41
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	90.15
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	89.13

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.90  E-value=3.7e-23  Score=140.01  Aligned_cols=80  Identities=24%  Similarity=0.429  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN   92 (94)
Q Consensus        13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy   92 (94)
                      .+++|.+++++|++++++++++++.|+.++.+|..|+++|+.|++ .++.++|||||+++||||++.|+++|+|+||+||
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~   80 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV   80 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCE
Confidence            489999999999999999999999999999999999999999986 6689999999999999999999999999999999


Q ss_pred             c
Q 034469           93 D   93 (94)
Q Consensus        93 ~   93 (94)
                      |
T Consensus        81 ~   81 (133)
T 1fxk_C           81 A   81 (133)
T ss_dssp             E
T ss_pred             E
Confidence            8

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.87  E-value=3.7e-22  Score=138.17  Aligned_cols=82  Identities=18%  Similarity=0.352  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCCeEEEecCCCeeeeeEeccCCeeEEecCC
Q 034469           12 MSVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRP-QGAKMLVPLTASLYVPGTLDDARKVLVDIGT   90 (94)
Q Consensus        12 L~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~-~~~eiLVPLt~slyV~gkl~d~~kVlVdIGt   90 (94)
                      -.+++|.+++++|++++++|+++++.|+.|.+++.++.++++.++..+ ++.++|||||+++||||++.|+++|+||||+
T Consensus         9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~   88 (151)
T 2zdi_C            9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS   88 (151)
T ss_dssp             THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence            457999999999999999999999999999999999999999888766 7899999999999999999999999999999


Q ss_pred             Ccc
Q 034469           91 END   93 (94)
Q Consensus        91 Gy~   93 (94)
                      |||
T Consensus        89 g~~   91 (151)
T 2zdi_C           89 GYA   91 (151)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            998

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=96.70  E-value=0.02  Score=36.58  Aligned_cols=60  Identities=15%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeE
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGT   77 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gk   77 (94)
                      .+++..-.++++++++.+..++..+..-..+...+.+.|+.+.   ++..++.|+| ++||+-.
T Consensus         8 ~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~---~d~~vy~~iG-~vfv~~~   67 (117)
T 2zqm_A            8 VQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP---DDAVVYKTVG-TLIVKTT   67 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---TTCCEEEEET-TEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCcHhHHHhh-HHHhhcc
Confidence            3566666688899999999999998877777777777666664   4677999999 5666543

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=96.13  E-value=0.08  Score=33.21  Aligned_cols=60  Identities=10%  Similarity=0.087  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeE
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGT   77 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gk   77 (94)
                      ++++..-.++++++++.+..+++.++.-..+...+.+.|+.+.   ++..++.++| ++||+-.
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~---~d~~vy~~iG-~vfv~~~   62 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA---DDAEVYKSSG-NILIRVA   62 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTCCEEEEET-TEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCchHHHHHh-HHHHhcc
Confidence            5677777788999999999999998877777777777777664   4667999998 4566543

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=92.10  E-value=0.42  Score=32.03  Aligned_cols=59  Identities=14%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcc-CC-----------------CCCCeEEEecCCCee
Q 034469           15 EQLKAIKEQTDLEVNLL---QDSLNNIRTATSRLESASTALHDLS-LR-----------------PQGAKMLVPLTASLY   73 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l---~~s~~~L~~a~~~~~~~~~al~~l~-~~-----------------~~~~eiLVPLt~sly   73 (94)
                      ++|...-+.+.+.++.|   ...+.       ++..++++|+.++ ..                 .+...|+|.||++.|
T Consensus        19 qql~~~~~~l~~~~~~L~~a~~~~~-------e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~   91 (151)
T 2zdi_C           19 QVLQAQAQILAQNLELLNLAKAEVQ-------TVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYA   91 (151)
T ss_dssp             HHHTTTTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeE
Confidence            34444446777777777   55554       4555566666554 21                 234679999999999


Q ss_pred             eeeEecc
Q 034469           74 VPGTLDD   80 (94)
Q Consensus        74 V~gkl~d   80 (94)
                      |.=.+.+
T Consensus        92 vE~~~~e   98 (151)
T 2zdi_C           92 VERSIDE   98 (151)
T ss_dssp             EEEEHHH
T ss_pred             EEecHHH
Confidence            9765543

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=91.41  E-value=0.98  Score=28.40  Aligned_cols=41  Identities=20%  Similarity=0.325  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD   54 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~   54 (94)
                      .+||..|++.++.|+++-...|..|+.++.+....+.-|+.
T Consensus        39 kEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           39 KEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            58999999999999999999999999888877766666553

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=90.15  E-value=1.1  Score=26.61  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRL   45 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~   45 (94)
                      ++||..+...+.+|+..++.-++.|+...+.+
T Consensus        29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L   60 (63)
T 2w6a_A           29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQL   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence            68888999999999999999998888766544

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=89.13  E-value=1.3  Score=28.74  Aligned_cols=66  Identities=8%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccC----------CCCCCeEEEecCCCeeeeeEecc
Q 034469           15 EQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESAST--ALHDLSL----------RPQGAKMLVPLTASLYVPGTLDD   80 (94)
Q Consensus        15 ~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~--al~~l~~----------~~~~~eiLVPLt~slyV~gkl~d   80 (94)
                      +++...-+.+.++++.+...+..++.+...+..-..  ..+.+-|          -.+...|+|.||.+.||.=.+.+
T Consensus        11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~e   88 (133)
T 1fxk_C           11 NIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFED   88 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHH
Confidence            566666678888888888888888877665544331  1111101          12345799999999999765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	94
d1fxkc_	133	a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Met	1e-09

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 133

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.1 bits (117), Expect = 1e-09
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASL 72
          ++ ++ A       +V L+Q  +  +R   S LE     L D+  +  G++ LVP+ A  
Sbjct: 2  ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGK-DGSETLVPVGAGS 60

Query: 73 YVPGTLDDARKVLVDIGTE 91
          ++   L D  +V++ +G  
Sbjct: 61 FIKAELKDTSEVIMSVGAG 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.87
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	94.88
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	91.36

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=6.6e-22  Score=131.89  Aligned_cols=81  Identities=23%  Similarity=0.405  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeeeeEeccCCeeEEecCCCc
Q 034469           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVPGTLDDARKVLVDIGTEN   92 (94)
Q Consensus        13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~gkl~d~~kVlVdIGtGy   92 (94)
                      +++||....+.++++++.|++++..|+..+++|..++++|+.++. ..++++|||||+++||||++.++++|+||||+||
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~-~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~   80 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGV   80 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCeEEEEcCCceEEEEEecCCCceEEEecCCe
Confidence            589999999999999999999999999999999999999999984 5688999999999999999999999999999999


Q ss_pred             cC
Q 034469           93 DG   94 (94)
Q Consensus        93 ~~   94 (94)
                      |.
T Consensus        81 ~v   82 (133)
T d1fxkc_          81 AI   82 (133)
T ss_dssp             EE
T ss_pred             ee
Confidence            84

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.88  E-value=0.044  Score=34.27  Aligned_cols=67  Identities=7%  Similarity=0.174  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c---------cC-CCCCCeEEEecCCCeeeeeEecc
Q 034469           14 VEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHD--L---------SL-RPQGAKMLVPLTASLYVPGTLDD   80 (94)
Q Consensus        14 ~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~--l---------~~-~~~~~eiLVPLt~slyV~gkl~d   80 (94)
                      .++|.+.-+.++++++.++..+..+..+...+..-.+.-+.  +         .. -.+..+++|+||++.||.=.+.+
T Consensus        10 ~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE~~~~e   88 (133)
T d1fxkc_          10 LNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFED   88 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeeeecHHH
Confidence            35666677889999999999999999888776654432211  1         00 13457899999999999755443

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.36  E-value=0.83  Score=27.38  Aligned_cols=59  Identities=10%  Similarity=0.118  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEecCCCeeee
Q 034469           13 SVEQLKAIKEQTDLEVNLLQDSLNNIRTATSRLESASTALHDLSLRPQGAKMLVPLTASLYVP   75 (94)
Q Consensus        13 ~~~qL~~l~~ql~qei~~l~~s~~~L~~a~~~~~~~~~al~~l~~~~~~~eiLVPLt~slyV~   75 (94)
                      +++++..-.++++++++.+..++++|.....+...+.+.|+.+.   ++..++=.+ ++++|+
T Consensus         2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~---~d~~vyk~v-G~vLv~   60 (107)
T d1fxka_           2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA---DDAEVYKSS-GNILIR   60 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---TTCCEEEEE-TTEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---cccHHHHHh-cchhhc
Confidence            46778888899999999999999999987777776666666654   344554333 344455