Citrus Sinensis ID: 034483
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 93 | ||||||
| 255575173 | 117 | hydrolase, hydrolyzing O-glycosyl compou | 0.935 | 0.743 | 0.839 | 7e-39 | |
| 356556872 | 113 | PREDICTED: glucan endo-1,3-beta-glucosid | 0.978 | 0.805 | 0.791 | 2e-38 | |
| 356549590 | 113 | PREDICTED: glucan endo-1,3-beta-glucosid | 0.978 | 0.805 | 0.780 | 3e-38 | |
| 225461844 | 114 | PREDICTED: glucan endo-1,3-beta-glucosid | 0.978 | 0.798 | 0.780 | 1e-37 | |
| 224061367 | 115 | predicted protein [Populus trichocarpa] | 0.978 | 0.791 | 0.791 | 1e-37 | |
| 224113663 | 120 | predicted protein [Populus trichocarpa] | 0.978 | 0.758 | 0.780 | 4e-37 | |
| 388500902 | 113 | unknown [Medicago truncatula] | 0.978 | 0.805 | 0.736 | 2e-35 | |
| 388496298 | 113 | unknown [Lotus japonicus] | 0.978 | 0.805 | 0.714 | 6e-35 | |
| 217075282 | 113 | unknown [Medicago truncatula] | 0.978 | 0.805 | 0.725 | 3e-34 | |
| 224119052 | 102 | predicted protein [Populus trichocarpa] | 0.860 | 0.784 | 0.825 | 2e-33 |
| >gi|255575173|ref|XP_002528491.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] gi|223532100|gb|EEF33908.1| hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/87 (83%), Positives = 80/87 (91%)
Query: 5 QKTWCVAKPSSDQAALLANINYACSQIDCRILQKGYPCFYPDNLMNHASISMNLYYQAKG 64
QKTWCVAKPSSDQA LLANINYACSQ+DCRILQKG PCF PDNLMNHASI+MN+YYQ++G
Sbjct: 31 QKTWCVAKPSSDQATLLANINYACSQVDCRILQKGCPCFSPDNLMNHASIAMNMYYQSRG 90
Query: 65 RNRWNCDFRNSALIVTTDPSYSKCVYS 91
RNRWNCDFRNS LIV TDPSY C+Y+
Sbjct: 91 RNRWNCDFRNSGLIVMTDPSYGNCIYA 117
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556872|ref|XP_003546744.1| PREDICTED: glucan endo-1,3-beta-glucosidase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549590|ref|XP_003543175.1| PREDICTED: glucan endo-1,3-beta-glucosidase-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225461844|ref|XP_002285661.1| PREDICTED: glucan endo-1,3-beta-glucosidase [Vitis vinifera] gi|147766908|emb|CAN67524.1| hypothetical protein VITISV_000410 [Vitis vinifera] gi|302142792|emb|CBI20087.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224061367|ref|XP_002300444.1| predicted protein [Populus trichocarpa] gi|222847702|gb|EEE85249.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224113663|ref|XP_002332529.1| predicted protein [Populus trichocarpa] gi|222832641|gb|EEE71118.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|388500902|gb|AFK38517.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|388496298|gb|AFK36215.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
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| >gi|217075282|gb|ACJ86001.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|224119052|ref|XP_002331313.1| predicted protein [Populus trichocarpa] gi|222873896|gb|EEF11027.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 93 | ||||||
| TAIR|locus:2202945 | 115 | AT1G78520 "AT1G78520" [Arabido | 0.956 | 0.773 | 0.677 | 6e-32 | |
| TAIR|locus:2043979 | 121 | AT2G43670 "AT2G43670" [Arabido | 0.913 | 0.702 | 0.564 | 2.5e-26 | |
| TAIR|locus:4515103362 | 114 | AT4G09462 "AT4G09462" [Arabido | 0.967 | 0.789 | 0.527 | 1.6e-22 | |
| TAIR|locus:4515103363 | 116 | AT4G09464 "AT4G09464" [Arabido | 0.967 | 0.775 | 0.516 | 4.3e-22 | |
| TAIR|locus:4515103365 | 116 | AT4G09467 "AT4G09467" [Arabido | 0.967 | 0.775 | 0.516 | 4.3e-22 | |
| TAIR|locus:4010713875 | 116 | AT4G09465 "AT4G09465" [Arabido | 0.967 | 0.775 | 0.516 | 5.5e-22 | |
| TAIR|locus:2095440 | 121 | AT3G28250 "AT3G28250" [Arabido | 0.913 | 0.702 | 0.517 | 9e-22 | |
| TAIR|locus:4515103364 | 116 | AT4G09466 "AT4G09466" [Arabido | 0.967 | 0.775 | 0.494 | 1e-20 | |
| TAIR|locus:2043999 | 123 | AT2G43660 "AT2G43660" [Arabido | 0.956 | 0.723 | 0.461 | 1.5e-19 | |
| TAIR|locus:2122338 | 116 | AT4G09090 "AT4G09090" [Arabido | 0.892 | 0.715 | 0.476 | 5.1e-19 |
| TAIR|locus:2202945 AT1G78520 "AT1G78520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 61/90 (67%), Positives = 71/90 (78%)
Query: 2 VNGQ-KTWCVAKPSSDQAALLANINYACSQIDCRILQKGYPCFYPDNLMNHASISMNLYY 60
VN + KTWCVAKPSSDQ AL NIN+ACS +DCR+L G PC+ P NL+NHASI+MNLYY
Sbjct: 25 VNAETKTWCVAKPSSDQVALQDNINFACSHVDCRVLLSGCPCYSPSNLINHASIAMNLYY 84
Query: 61 QAKGRNRWNCDFRNSALIVTTDPSYSKCVY 90
QA GRN WNC+F+NS LI T+PSY C Y
Sbjct: 85 QANGRNYWNCNFKNSGLITITNPSYGNCYY 114
|
|
| TAIR|locus:2043979 AT2G43670 "AT2G43670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103362 AT4G09462 "AT4G09462" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103363 AT4G09464 "AT4G09464" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103365 AT4G09467 "AT4G09467" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4010713875 AT4G09465 "AT4G09465" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095440 AT3G28250 "AT3G28250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:4515103364 AT4G09466 "AT4G09466" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2043999 AT2G43660 "AT2G43660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2122338 AT4G09090 "AT4G09090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00027945001 | SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotgun sequence); (114 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 93 | |||
| smart00768 | 85 | smart00768, X8, Possibly involved in carbohydrate | 3e-32 | |
| pfam07983 | 77 | pfam07983, X8, X8 domain | 5e-14 |
| >gnl|CDD|197867 smart00768, X8, Possibly involved in carbohydrate binding | Back alignment and domain information |
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Score = 106 bits (268), Expect = 3e-32
Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 7 TWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGR 65
WCVAKP +D+AAL A ++YAC Q DC +Q G C+ P+ + HAS + N YYQ +G+
Sbjct: 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQ 60
Query: 66 NRWNCDFRNSALIVTTDPSYSKCVY 90
+ CDF +A I TTDPS C +
Sbjct: 61 SSGACDFSGTATITTTDPSTGSCKF 85
|
The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. Length = 85 |
| >gnl|CDD|219681 pfam07983, X8, X8 domain | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 93 | |||
| smart00768 | 85 | X8 Possibly involved in carbohydrate binding. The | 100.0 | |
| PF07983 | 78 | X8: X8 domain; InterPro: IPR012946 The X8 domain [ | 99.96 |
| >smart00768 X8 Possibly involved in carbohydrate binding | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=200.04 Aligned_cols=84 Identities=48% Similarity=0.935 Sum_probs=82.3
Q ss_pred cceEeCCCCCHHHHHHHHHhhcCc-cccccccCCCCCCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCceEEEecCCCC
Q 034483 7 TWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNSALIVTTDPSY 85 (93)
Q Consensus 7 ~wCV~~~~~~~~~l~~~l~~aCg~-~dC~~I~~~g~c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~A~i~~~dps~ 85 (93)
+|||+|+++++++|+++|+|||++ +||++|++||+||+|+++++|||||||+|||++++.+++|||+|+|+|++.||+.
T Consensus 1 ~wCv~~~~~~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps~ 80 (85)
T smart00768 1 LWCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPST 80 (85)
T ss_pred CccccCCCCCHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCCC
Confidence 599999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred Ceeee
Q 034483 86 SKCVY 90 (93)
Q Consensus 86 ~~C~~ 90 (93)
++|+|
T Consensus 81 ~~C~~ 85 (85)
T smart00768 81 GSCKF 85 (85)
T ss_pred CccCC
Confidence 99986
|
The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
| >PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 93 | ||||
| 2jon_A | 101 | Solution Structure Of The C-Terminal Domain Ole E 9 | 6e-21 |
| >pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 Length = 101 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 93 | |||
| 2jon_A | 101 | Beta-1,3-glucanase; olive pollen, allergen; NMR {O | 3e-34 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 8e-14 |
| >2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} Length = 101 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-34
Identities = 44/88 (50%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 4 GQKTWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQA 62
+WCV KP L NINYACSQ IDC +Q G CF P+ + HA+ MNLYYQ
Sbjct: 9 AAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQH 68
Query: 63 KGRNRWNCDFRNSALIVTTDPSYSKCVY 90
GRN WNCDF +A + T+PSY C +
Sbjct: 69 AGRNSWNCDFSQTATLTNTNPSYGACNF 96
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Length = 555 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 93 | |||
| 2jon_A | 101 | Beta-1,3-glucanase; olive pollen, allergen; NMR {O | 100.0 | |
| 2w61_A | 555 | GAS2P, glycolipid-anchored surface protein 2; glyc | 99.95 |
| >2jon_A Beta-1,3-glucanase; olive pollen, allergen; NMR {Olea europaea} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=221.01 Aligned_cols=90 Identities=49% Similarity=0.975 Sum_probs=86.8
Q ss_pred CCccceEeCCCCCHHHHHHHHHhhcCc-cccccccCCCCCCCCCChhhhHhHHHHHHHHHhCCCCCCCCCCCceEEEecC
Q 034483 4 GQKTWCVAKPSSDQAALLANINYACSQ-IDCRILQKGYPCFYPDNLMNHASISMNLYYQAKGRNRWNCDFRNSALIVTTD 82 (93)
Q Consensus 4 ~~~~wCV~~~~~~~~~l~~~l~~aCg~-~dC~~I~~~g~c~~~~t~~~~aSya~N~Yyq~~~~~~~aCdF~G~A~i~~~d 82 (93)
..++|||+|+++++++|+++|+|||++ +||++|++||+||.|+++++|||||||+|||++++..++|||+|+|+|+++|
T Consensus 9 ~~~~wCVak~~~~~~~l~~~ldyACg~gaDC~~I~~gg~Cy~p~t~~~haSyAfN~YYq~~~~~~~aCdF~G~A~it~~d 88 (101)
T 2jon_A 9 AAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGRNSWNCDFSQTATLTNTN 88 (101)
T ss_dssp CCSCEEEECTTSCHHHHHHHHHHHTTTSSSSSTTCCCSSSCSSCCTTHHHHHHHHHHHHHHTSSGGGCCSCSSEEEESSC
T ss_pred CCCcEEEECCCCCHHHHHHHHHHHcCCCCCccccCcCCcccCCCCHHHHHHHHHHHHHHHcCCCCCccCCCCeEEEeecC
Confidence 467899999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeecC
Q 034483 83 PSYSKCVYSYL 93 (93)
Q Consensus 83 ps~~~C~~~~~ 93 (93)
||.++|+|+++
T Consensus 89 PS~g~C~f~~~ 99 (101)
T 2jon_A 89 PSYGACNFPSG 99 (101)
T ss_dssp CCCSSSCCCCS
T ss_pred CCCCceecCCC
Confidence 99999999863
|
| >2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00