Citrus Sinensis ID: 034496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Secondary Structure (PSIPRED)
ccEEEEHHHccHHHHHccEEEEEEEcccEEEEEcccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHEHEHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEccccccccHcccHHHHHHHHHHHHHHHcccccccHHHHHHHcEEEcccc
Coil and Loop (DISEMBL)
MFFTILMKFQWSKQVLEAKMIWVDRlgfdvriscpqkglfdvripfptevtdekgakssfNCMSQQAWEVEknyqspnfkkvkhlkqipyrgl
Flexible Loop (DISEMBL)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPtevtdekgakssFNCMSQQAWEVEknyqspnfkkvkhlkqipyrgl
Low Complexity Region (SEG)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Disordered region (IsUnstruct)
*FFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEV*******************************************
Disordered Region (DISOPRED)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYR**
Disordered Region (DISEMBL)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Disordered Region (DISPRO)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFFTILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNFKKVKHLKQIPYRGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
225443292	324	PREDICTED: uncharacterized protein LOC10	0.849	0.243	0.810	1e-30
298204792	318	unnamed protein product [Vitis vinifera]	0.849	0.248	0.810	1e-30
147855252	304	hypothetical protein VITISV_020994 [Viti	0.849	0.259	0.784	7e-29
224113295	322	predicted protein [Populus trichocarpa]	0.860	0.248	0.787	2e-28
35187431	185	fiber protein Fb4 [Gossypium barbadense]	0.849	0.427	0.772	3e-27
358248688	305	uncharacterized protein LOC100814950 [Gl	0.795	0.242	0.756	4e-27
388518743	312	unknown [Lotus japonicus]	0.795	0.237	0.743	8e-27
316936736	320	glutamyl-tRNA reductase binding protein	0.860	0.25	0.7	4e-26
316936734	320	glutamyl-tRNA reductase binding protein	0.860	0.25	0.687	1e-25
449432392	320	PREDICTED: uncharacterized protein LOC10	0.806	0.234	0.72	3e-25

>gi|225443292|ref|XP_002274572.1| PREDICTED: uncharacterized protein LOC100260424 [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 70/79 (88%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           Q LEAK+IWVDRLGFD+RIS PQK +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKN
Sbjct: 245 QALEAKLIWVDRLGFDMRISSPQKDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKN 304

Query: 74  YQSPNFKKVKHLKQIPYRG 92
           Y +P+FKKVK LKQI YRG
Sbjct: 305 YNAPDFKKVKQLKQITYRG 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204792|emb|CBI25290.3| unnamed protein product [Vitis vinifera]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 70/79 (88%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           Q LEAK+IWVDRLGFD+RIS PQK +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKN
Sbjct: 239 QALEAKLIWVDRLGFDMRISSPQKDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKN 298

Query: 74  YQSPNFKKVKHLKQIPYRG 92
           Y +P+FKKVK LKQI YRG
Sbjct: 299 YNAPDFKKVKQLKQITYRG 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855252|emb|CAN79599.1| hypothetical protein VITISV_020994 [Vitis vinifera]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 68/79 (86%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           Q  EAK+IWVDRLGFD+RIS PQ  +F+VRIPFP EVTDEKGAKSSFN MSQ AWEVEKN
Sbjct: 225 QAXEAKLIWVDRLGFDMRISSPQXDVFEVRIPFPREVTDEKGAKSSFNSMSQLAWEVEKN 284

Query: 74  YQSPNFKKVKHLKQIPYRG 92
           Y +P+FKKVK LKQI YRG
Sbjct: 285 YNAPDFKKVKQLKQIAYRG 303

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113295|ref|XP_002316448.1| predicted protein [Populus trichocarpa] gi|222865488|gb|EEF02619.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 69/80 (86%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           QV EAKMIWVDRLGFD+R+  PQKG FDVRIPFP EVTD KGAKSSFN MSQ AWEVEKN
Sbjct: 243 QVSEAKMIWVDRLGFDMRLWSPQKGTFDVRIPFPREVTDVKGAKSSFNGMSQLAWEVEKN 302

Query: 74  YQSPNFKKVKHLKQIPYRGL 93
           YQ+ NFKKV+ LKQI ++GL
Sbjct: 303 YQTLNFKKVQQLKQITHKGL 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|35187431|gb|AAQ84307.1| fiber protein Fb4 [Gossypium barbadense]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 68/79 (86%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           QV EAKMIWVD LGFD+RI  PQKG+FDVRIPFP EVTDEKGAKSSFN MSQ AWEVEKN
Sbjct: 105 QVSEAKMIWVDCLGFDLRIYSPQKGVFDVRIPFPREVTDEKGAKSSFNGMSQLAWEVEKN 164

Query: 74  YQSPNFKKVKHLKQIPYRG 92
           + +P+F+KVK LK+I Y G
Sbjct: 165 FHAPDFEKVKPLKKIVYSG 183

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248688|ref|NP_001240179.1| uncharacterized protein LOC100814950 [Glycine max] gi|255639606|gb|ACU20097.1| unknown [Glycine max]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 65/74 (87%)

Query: 15  VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 74
           V EAKM+WVDRLGFD+R+S P KG+FDVRIPFP EVTDEKGAKS+FNCMSQ AWEVE+N+
Sbjct: 227 VSEAKMLWVDRLGFDMRLSSPHKGVFDVRIPFPREVTDEKGAKSTFNCMSQLAWEVERNF 286

Query: 75  QSPNFKKVKHLKQI 88
           Q P+F KVK LK +
Sbjct: 287 QHPDFSKVKELKPV 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518743|gb|AFK47433.1| unknown [Lotus japonicus]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 65/74 (87%)

Query: 15  VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 74
           V +AKM+WVDRLGFD+R+SCP +G F+ RIPFP EVTDEKGAKSSFNCMSQ AWEVEKN+
Sbjct: 237 VSQAKMVWVDRLGFDMRLSCPLQGTFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKNF 296

Query: 75  QSPNFKKVKHLKQI 88
             P+F+KVK LKQ+
Sbjct: 297 HPPDFQKVKQLKQV 310

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316936736|gb|ADU60362.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 64/80 (80%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           QV +AKM+WVDRLGFDVR   PQ  +F+ RIPFP EVTDEKGAKSSFNCMSQ AWEVEKN
Sbjct: 241 QVSDAKMLWVDRLGFDVRFRSPQNDVFEARIPFPREVTDEKGAKSSFNCMSQLAWEVEKN 300

Query: 74  YQSPNFKKVKHLKQIPYRGL 93
           + +  F+K K LK+I Y GL
Sbjct: 301 FHAAEFEKAKQLKKIEYTGL 320

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316936734|gb|ADU60361.1| glutamyl-tRNA reductase binding protein [Nicotiana tabacum]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/80 (68%), Positives = 63/80 (78%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           QV +AKM+WVDRLGFDVR   PQ  +F+ RIPFP EV DEKGAKSSFNCMSQ AWEVEKN
Sbjct: 241 QVSDAKMLWVDRLGFDVRFRSPQNDVFEARIPFPREVADEKGAKSSFNCMSQLAWEVEKN 300

Query: 74  YQSPNFKKVKHLKQIPYRGL 93
           + +  F+K K LK+I Y GL
Sbjct: 301 FHAAEFEKAKQLKKIEYTGL 320

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432392|ref|XP_004133983.1| PREDICTED: uncharacterized protein LOC101210647 [Cucumis sativus] gi|449487540|ref|XP_004157677.1| PREDICTED: uncharacterized protein LOC101224538 [Cucumis sativus]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 64/75 (85%)

Query: 14  QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKN 73
           Q  EAK+IWVDRLGFDVRI  PQ G+F++RIPFP EVTDEKGAKS+FN MSQQAWEVEKN
Sbjct: 239 QFTEAKLIWVDRLGFDVRIFSPQNGIFEIRIPFPREVTDEKGAKSTFNGMSQQAWEVEKN 298

Query: 74  YQSPNFKKVKHLKQI 88
           + +P+F++VK  K I
Sbjct: 299 FVAPDFERVKQFKMI 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2094741	317	PGR7 "AT3G21200" [Arabidopsis	0.784	0.230	0.702	6.1e-23

TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/74 (70%), Positives = 61/74 (82%)

Query:    15 VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNY 74
             V E KMIW+DRLGFD+R+  P +G++DVRIPFP EVTDEKGAKSSFN MSQ AWEVEK+Y
Sbjct:   233 VSETKMIWMDRLGFDLRVWSP-RGVYDVRIPFPMEVTDEKGAKSSFNGMSQLAWEVEKSY 291

Query:    75 QSPNFKKVKHLKQI 88
                +F KVK LKQ+
Sbjct:   292 CPADFNKVKLLKQV 305


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.137   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.45    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.51u 0.12s 10.63t   Elapsed:  00:00:00
  Total cpu time:  10.51u 0.12s 10.63t   Elapsed:  00:00:00
  Start:  Thu May  9 17:16:42 2013   End:  Thu May  9 17:16:42 2013

GO:0009507 "chloroplast" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP

GO:0043495 "protein anchor" evidence=IDA

GO:0070455 "positive regulation of heme biosynthetic process" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00025279001 SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (96 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam10615	81	pfam10615, DUF2470, Protein of unknown function (D	0.001

>gnl|CDD|204534 pfam10615, DUF2470, Protein of unknown function (DUF2470)

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)

Query: 17 EAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTD 52
           A+M  +D  G D+R+         +RIPF   +TD
Sbjct: 39 SARMTGIDPEGMDLRV-----DGATLRIPFDHPLTD 69

This family is a putative haem-iron utilisation family, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however this could not be confirmed. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF10615	83	DUF2470: Protein of unknown function (DUF2470); In	99.52
COG0748	245	HugZ Putative heme iron utilization protein [Inorg	97.66

>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known

Probab=99.52  E-value=1.7e-14  Score=93.47  Aligned_cols=57  Identities=37%  Similarity=0.547  Sum_probs=46.8

Q ss_pred             hhhhhhhcCc-ccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHH
Q 034496            4 TILMKFQWSK-QVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS   64 (93)
Q Consensus         4 ~~~~~~~~~~-~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~   64 (93)
                      .+|++++.|+ .++.|+|++||++||++++   + +...+||||++|++|.+++|.+||+|+
T Consensus        26 ~~~~~~~~~~~~~~~a~m~~id~~G~~l~~---~-~~~~~ripF~~p~~~~~e~r~~lV~ma   83 (83)
T PF10615_consen   26 LLYARHYGGVPDAASARMTDIDRDGFDLRV---G-GDQDVRIPFPPPVTDPEEARDALVEMA   83 (83)
T ss_dssp             HHHHHHHHT-SSSSS-EEEEEETTEEEEEE---T-TTEEEEEE-SS---SHCCHHHHHHHHH
T ss_pred             HHHHHhcCCCCCCCCEEEEEEeccccEEEE---e-CCcceEcCCCCCCCCHHHHHHHHHHhC
Confidence            4688999999 4789999999999999999   4 679999999999999999999999996

; PDB: 3GAS_D 3SWJ_A 2ARZ_B.

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]

Probab=97.66  E-value=2.4e-05  Score=61.01  Aligned_cols=64  Identities=6%  Similarity=-0.052  Sum_probs=53.5

Q ss_pred             hhhhhcCcc-cceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496            6 LMKFQWSKQ-VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV   70 (93)
Q Consensus         6 ~~~~~~~~~-at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~   70 (93)
                      ++..+-++. ++..+|.+||+.|+++.++..+ +....|++|.+|+.+.+|.+.+++.|++.+...
T Consensus       177 yaqv~~~~~e~~~~~I~~Id~~gdfll~~l~~-~~gl~v~gFgqa~~~~~d~~~~lV~l~~~~h~~  241 (245)
T COG0748         177 YAQVLAQLAEATGGRIKGIDAMGDFLLFQLTP-GQGLFVKGFGQAYAISGDGRIALVGLAGGPHGF  241 (245)
T ss_pred             HHHHHHHHhhhhcchhhcccccccceeeeccC-CCceEEeccchhhccccchhHHHHHHhcCcccc
Confidence            444455553 5567799999999999999877 889999999999999999999999999875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	7e-10
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	7e-10
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	7e-08
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	2e-04
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	5e-04

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258

 Score = 52.6 bits (125), Expect = 7e-10
 Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 17  EAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 67
             K+  +D  G D+            R+ F   V   K  + +   + + +
Sbjct: 213 RWKITSIDPDGIDLAS-----ASDLARLWFAERVETLKQFEKALAQLLKGS 258

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247

 Score = 52.8 bits (125), Expect = 7e-10
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 6   LMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQ 65
            ++         A++  +D  GF +RI     G     +PFP    +    + +   +++
Sbjct: 181 YVELAGLPAHAAAQLAGIDTEGFHLRI-----GQGLHWLPFPAACGNPGAVRQALVQLAR 235

Query: 66  QA-WEVEKNYQS 76
              W   +  Q 
Sbjct: 236 AERWPTVEPEQG 247

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259

 Score = 47.0 bits (111), Expect = 7e-08
 Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 4/72 (5%)

Query: 13 KQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEK 72
                    VD  G  +  +        +RI F  EV D K  K++   + Q   +   
Sbjct: 28 HHAENVAFKSVDSQGIVIGYN----NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKTHD 83

Query: 73 NYQSPNFKKVKH 84
                  K   
Sbjct: 84 LKGVEEEVKAFK 95

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 13/57 (22%)

Query: 23  VDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVEKNYQSPNF 79
           +  LG DV IS PQKG        P        A      +S  A +  ++ +S  F
Sbjct: 185 MKELGIDVLISAPQKGW---SST-P-------CA--GLVMLSAAAIKKVESTESNCF 228

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 5  ILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMS 64
          +  KF   +QV +  +  VD  G D+  +       ++R+ FP +  +     +  +   
Sbjct: 21 LCKKFGGIEQVQDVFLKSVDFNGLDLVYN----DKENLRVEFPKKADENTIKDTIISLCM 76

Query: 65 QQAWEVEKNYQSPNFKKVKH 84
              E   +       +   
Sbjct: 77 SAKSEQNFSGVEKELNEFML 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
2arz_A	247	Hypothetical protein PA4388; hypothetical protein,	99.51
3gas_A	259	Heme oxygenase; FMN-binding split barrel, oxidored	99.51
3swj_A	251	CHUZ, putative uncharacterized protein; heme oxyge	99.45
3dnh_A	258	Uncharacterized protein ATU2129; APC6114, agrobact	99.3

>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1

Probab=99.51  E-value=1.2e-14  Score=106.26  Aligned_cols=63  Identities=14%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             hhhhhhhcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHhh
Q 034496            4 TILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEVE   71 (93)
Q Consensus         4 ~~~~~~~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~~   71 (93)
                      ..|++++.|+..+.|+|++||++||||++.     ...+||||++|++|.+++|.+|++|+++||+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~iD~~G~~l~~~-----~~~~Ri~F~~~~~~~~~~~~~l~~m~~~a~~~~  241 (247)
T 2arz_A          179 AHYVELAGLPAHAAAQLAGIDTEGFHLRIG-----QGLHWLPFPAACGNPGAVRQALVQLARAERWPT  241 (247)
T ss_dssp             HHHHHHHCCCCSSCCEEEEECSSEEEEEET-----TEEEEEECSSCCCSHHHHHHHHHHHHHCSSCCC
T ss_pred             HHHHHHhCCCCccceEEEEEccCCCEEEEC-----CEEEEEeCCCcCCCHHHHHHHHHHHHHHhHhhc
Confidence            467889999988889999999999999992     378999999999999999999999999998654

>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}

Probab=99.51  E-value=2.2e-14  Score=108.83  Aligned_cols=63  Identities=22%  Similarity=0.138  Sum_probs=58.0

Q ss_pred             hhhhhhhcCcc-cceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496            4 TILMKFQWSKQ-VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV   70 (93)
Q Consensus         4 ~~~~~~~~~~~-at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~   70 (93)
                      .+|++++.|++ +++|+|++||++||+|++   + +...+||||++|++|++|+|.+||+|+++|+++
T Consensus        18 ~~y~~~~~~~~~~~~a~m~~iD~~G~~l~~---~-~~~~~ri~F~~~~~~~~~~r~~lV~m~~~A~~~   81 (259)
T 3gas_A           18 KGLLKKFGQVHHAENVAFKSVDSQGIVIGY---N-NNQTLRIEFNHEVKDPKDYKNATIELCQSVEKT   81 (259)
T ss_dssp             HHHHHHHHCCCSCCSCEEEEEETTEEEEEE---T-TTEEEEEECSSCCCCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCCCceEEEEEecCccEEEE---C-CceEEEEeCCCcCCCHHHHHHHHHHHHHHHHHh
Confidence            46899999995 789999999999999999   2 468999999999999999999999999999976

>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}

Probab=99.45  E-value=5.1e-14  Score=105.76  Aligned_cols=62  Identities=23%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             hhhhhhhcCcc-cceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496            4 TILMKFQWSKQ-VLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV   70 (93)
Q Consensus         4 ~~~~~~~~~~~-at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~   70 (93)
                      .+|++++.|+. +++|+|++||++||+|.+   | +...+||||++|+ |++++|.+||+|+++|+..
T Consensus        19 ~~~a~~~~~~~~~~~~~~~~iD~~g~~l~~---~-~~~~~ri~F~~~~-~~~~~r~~lv~m~~~a~~~   81 (251)
T 3swj_A           19 VDLCKKFGGIEQVQDVFLKSVDFNGLDLVY---N-DKENLRVEFPKKA-DENTIKDTIISLCMSAKSE   81 (251)
T ss_dssp             HHHHHHHTCCSCCC-CEEEEEETTEEEEEC-------CEEEEECSSCC-CTTTHHHHHHHHHHHHSSS
T ss_pred             HHHHHHhCCCCCCCeeEEEEEecccCEEEe---C-CceEEEEeCCCCC-CHHHHHHHHHHHHHhcccc
Confidence            47899999995 889999999999999998   2 4689999999999 9999999999999999876

>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens}

Probab=99.30  E-value=1.4e-12  Score=97.71  Aligned_cols=58  Identities=16%  Similarity=-0.005  Sum_probs=51.4

Q ss_pred             hhhhhhhcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHHHh
Q 034496            4 TILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAWEV   70 (93)
Q Consensus         4 ~~~~~~~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~e~   70 (93)
                      ..|++ +.|+.++.|+|+|||++||||++     +...+||||+   +|.+++|++|++|+++|+++
T Consensus       201 ~~~~~-~~~~~~~~a~~~~vD~~G~dl~~-----~~~~~Ri~F~---~d~~~~r~~lv~m~~~ar~~  258 (258)
T 3dnh_A          201 SRLAV-LAGAKTGRWKITSIDPDGIDLAS-----ASDLARLWFA---ERVETLKQFEKALAQLLKGS  258 (258)
T ss_dssp             HHHHH-HTTCCCSSCEEEEEETTEEEEEC-----SSCEEEEECS---SCCCSHHHHHHHHHHHTC--
T ss_pred             HHHHH-hCCCCCCcEEEEEEccCcCEEEE-----CCEEEEeeCC---CCHHHHHHHHHHHHHHhhcC
Confidence            35777 88998899999999999999998     3589999999   99999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2arza1	238	b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps	2e-10

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 17  EAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQA 67
            A++  +D  GF +RI     G     +PFP    +    + +   +++  
Sbjct: 188 AAQLAGIDTEGFHLRI-----GQGLHWLPFPAACGNPGAVRQALVQLARAE 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2arza1	238	Hypothetical protein PA4388 {Pseudomonas aeruginos	99.5

>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=9.9e-15  Score=105.98  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             hhhhhhhcCcccceeEEeeeecCccEEEEEcCCCCeeeEEecCCcccCChHHHHHHHHHHHHHHH
Q 034496            4 TILMKFQWSKQVLEAKMIWVDRLGFDVRISCPQKGLFDVRIPFPTEVTDEKGAKSSFNCMSQQAW   68 (93)
Q Consensus         4 ~~~~~~~~~~~at~ArMlgIDr~GmdLrV~~~g~~~~~vRIpF~~pvtD~~dar~aLV~M~r~A~   68 (93)
                      .++++++.++++.+|+|++||++||+|++     +...+||||++|++|.+++|.+|++|+++|+
T Consensus       175 ~~~~~~~~~~~~~~a~m~~iD~~G~~l~~-----~~~~~ri~F~~~~~~~~~~r~~lv~l~~~ar  234 (238)
T d2arza1         175 AHYVELAGLPAHAAAQLAGIDTEGFHLRI-----GQGLHWLPFPAACGNPGAVRQALVQLARAER  234 (238)
T ss_dssp             HHHHHHHCCCCSSCCEEEEECSSEEEEEE-----TTEEEEEECSSCCCSHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHhCCCCCCceEEEEEccCcCEEEE-----CCEEEEEeCCCcCCCHHHHHHHHHHHHHHhh
Confidence            36788999999999999999999999999     3468999999999999999999999999886