Citrus Sinensis ID: 034497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MASKFSNSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPKIKKNDS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MASKFSNSFLLLRFCRRSNAvaagnvggkqpAAAEVMRKMTDMkaesvcgvekeefwmrdpntgnwipesqfnqidaADLRDQllpkikknds
Flexible Loop (DISEMBL)
MASKFSNSFLLLRFCRRSNAvaagnvggkqpAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDqllpkikknds
Low Complexity Region (SEG)
MASKFSNSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPKIKKNDS
Disordered region (IsUnstruct)
*******SFLLLRFCRRSNAVAAGN*********************SVCGVEKEEFWMRDPNTGNWIPESQFN********************
Disordered Region (DISOPRED)
********FLLLRFCRRSNA************************************WMRDPNTGNWIPESQFNQIDAADLR************
Disordered Region (DISEMBL)
********FLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPKIKKNDS
Disordered Region (DISPRO)
****FSNSFLLLRFCRRSNAVAAGNVGGK***********************KEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASKFSNSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPKIKKNDS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
255584448	91	conserved hypothetical protein [Ricinus	0.860	0.879	0.5	6e-12
359482897	93	PREDICTED: uncharacterized protein LOC10	0.827	0.827	0.435	4e-11
351720876	93	uncharacterized protein LOC100305512 [Gl	0.666	0.666	0.478	4e-10
357142618	86	PREDICTED: late embryogenesis abundant p	0.731	0.790	0.428	2e-08
242035535	95	hypothetical protein SORBIDRAFT_01g03307	0.913	0.894	0.369	1e-07
224071009	57	predicted protein [Populus trichocarpa]	0.548	0.894	0.538	2e-07
357119680	88	PREDICTED: uncharacterized protein LOC10	0.365	0.386	0.676	3e-07
125561745	105	hypothetical protein OsI_29438 [Oryza sa	0.763	0.676	0.472	4e-07
42407625	105	hypothetical protein [Oryza sativa Japon	0.763	0.676	0.472	8e-07
357514293	97	hypothetical protein MTR_8g022990 [Medic	0.838	0.804	0.392	9e-07

>gi|255584448|ref|XP_002532955.1| conserved hypothetical protein [Ricinus communis] gi|223527284|gb|EEF29439.1| conserved hypothetical protein [Ricinus communis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 57/86 (66%), Gaps = 6/86 (6%)

Query: 7  NSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVC--GVEKEEFWMRDPNTG 64
          ++FLLL   +RS AVA  ++   QP  + VMRK  ++ AE +    V+ E FWMRDP TG
Sbjct: 7  SNFLLL--SKRSYAVATESLNV-QPLLS-VMRKAQELAAEELAEKKVKDETFWMRDPKTG 62

Query: 65 NWIPESQFNQIDAADLRDQLLPKIKK 90
          NWIPES F +IDAADLR + L + +K
Sbjct: 63 NWIPESHFGEIDAADLRRKFLSRKEK 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482897|ref|XP_003632857.1| PREDICTED: uncharacterized protein LOC100855396 [Vitis vinifera]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 8/85 (9%)

Query: 8  SFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKM-----TDMKAESVCGVEKEEFWMRDPN 62
          SFLL  FC R +  AA      QP A+ V + M     +D K E+    +KE FWM+DP 
Sbjct: 8  SFLL--FCNRRSYAAAAETAVVQPVASAVRKAMDSTTTSDSKTEAAAQ-QKESFWMKDPK 64

Query: 63 TGNWIPESQFNQIDAADLRDQLLPK 87
          TGNWIPE+ F+  D   LR++ LP+
Sbjct: 65 TGNWIPEAHFDDTDVVALREKFLPR 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720876|ref|NP_001236423.1| uncharacterized protein LOC100305512 [Glycine max] gi|255625741|gb|ACU13215.1| unknown [Glycine max]

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/69 (47%), Positives = 46/69 (66%), Gaps = 7/69 (10%)

Query: 32 AAAEVMRKM---TDMKAES----VCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQL 84
            AE +RK    T MK++S    V  +++E+FWMRDP +GNWIPE+ F Q+DAA+LR++ 
Sbjct: 21 VVAESLRKQIEGTTMKSKSASDNVINIKEEKFWMRDPKSGNWIPENHFGQVDAAELREKF 80

Query: 85 LPKIKKNDS 93
          LP    N S
Sbjct: 81 LPTRHTNSS 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357142618|ref|XP_003572634.1| PREDICTED: late embryogenesis abundant protein Lea5-like [Brachypodium distachyon]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 9/77 (11%)

Query: 11 LLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPES 70
          LL   RR  A +AG         AE    M    + +     +E FWMRDP TGNWIPE+
Sbjct: 9  LLSLSRRGYAASAG---------AERASAMAARISATEGAAGREIFWMRDPKTGNWIPEN 59

Query: 71 QFNQIDAADLRDQLLPK 87
          +F ++DAA+LR QLL +
Sbjct: 60 RFAEVDAAELRAQLLSR 76

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242035535|ref|XP_002465162.1| hypothetical protein SORBIDRAFT_01g033070 [Sorghum bicolor] gi|241919016|gb|EER92160.1| hypothetical protein SORBIDRAFT_01g033070 [Sorghum bicolor]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 7/92 (7%)

Query: 1  MASKFSNSFLLLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGV-------EK 53
          M+SK  +SF+    CRRS  V A  V  +  +AA  +      K + V          + 
Sbjct: 1  MSSKIGSSFVSSLICRRSYGVYATAVNVQHASAAAAVAATPMAKTDVVAAAADASRAKQD 60

Query: 54 EEFWMRDPNTGNWIPESQFNQIDAADLRDQLL 85
          ++FWMRDP TG WIPE++F ++D  DLR++L+
Sbjct: 61 DKFWMRDPKTGCWIPENRFQEVDVVDLRNRLI 92

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071009|ref|XP_002303328.1| predicted protein [Populus trichocarpa] gi|222840760|gb|EEE78307.1| predicted protein [Populus trichocarpa]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)

Query: 37 MRKMTDMKA-ESVCGVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLLPK 87
          MRK  D+K+ E +     +EFWMRDP TGNWIPES F  ID A++R++ L K
Sbjct: 1  MRKARDVKSSEDLETGGSKEFWMRDPKTGNWIPESHFGDIDVAEMREKFLSK 52

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357119680|ref|XP_003561563.1| PREDICTED: uncharacterized protein LOC100826408 [Brachypodium distachyon]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 31/34 (91%)

Query: 52 EKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLL 85
          +KE FWMRDPNTG WIPE++F+++DA +LR+QLL
Sbjct: 52 KKEVFWMRDPNTGCWIPENRFDEVDAVELRNQLL 85

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125561745|gb|EAZ07193.1| hypothetical protein OsI_29438 [Oryza sativa Indica Group]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 15  CRRS-NAVAAGNVGGKQPAAAEVMRKMTDMKAE--SVCGVEKEEFWMRDPNTGNWIPESQ 71
           CRRS +A AA  V  ++PA A        ++A   +  G ++  FWMR+P TGNW+PE+ 
Sbjct: 27  CRRSFSAAAAAAVRQQEPATAAAAGTTAKLQAAEGAAAGSKEGFFWMREPRTGNWMPENH 86

Query: 72  FNQIDAADLRDQLL 85
           FN +DAADLR QLL
Sbjct: 87  FNDVDAADLRSQLL 100

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42407625|dbj|BAD08740.1| hypothetical protein [Oryza sativa Japonica Group] gi|125603617|gb|EAZ42942.1| hypothetical protein OsJ_27532 [Oryza sativa Japonica Group]

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 15  CRRS-NAVAAGNVGGKQPAAAEVMRKMTDMKAE--SVCGVEKEEFWMRDPNTGNWIPESQ 71
           CRRS +A AA  V  ++PA A        ++A   +  G ++  FWMR+P TGNW+PE+ 
Sbjct: 27  CRRSFSAAAAAAVRQQEPATAAAAGTTAKLQAAEGAAAGSKEGFFWMREPRTGNWMPENH 86

Query: 72  FNQIDAADLRDQLL 85
           FN +DAADLR QLL
Sbjct: 87  FNDVDAADLRSQLL 100

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514293|ref|XP_003627435.1| hypothetical protein MTR_8g022990 [Medicago truncatula] gi|355521457|gb|AET01911.1| hypothetical protein MTR_8g022990 [Medicago truncatula]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 11 LLRFCRRSNAVAAGNVGGKQPAAAEVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPES 70
          LL   ++  AV A ++  +       + K    ++ SV   E++ FWMRDP TGNWIPE+
Sbjct: 15 LLHIRKQCYAVVAKSLRLQGTKTNMEVVKTNVKESISVANEERKIFWMRDPKTGNWIPEN 74

Query: 71 QFNQI-DAADLRDQLLPKI 88
           F ++ D ADLR++ L KI
Sbjct: 75 HFGEVDDDADLRNKFLSKI 93

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2133279	97	SAG21 "AT4G02380" [Arabidopsis	0.860	0.824	0.359	6.3e-05

TAIR|locus:2133279 SAG21 "AT4G02380" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query:     1 MASKFSNSFLLLRFCRRSNAVAA--GNV--GGKQPAAAEVMRKMTDMKAESVCGVEKEEF 56
             + S F +  L     RR  A  A  G+V  GG+  A A  + K   ++ ES   +     
Sbjct:    10 IVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASAVMKKKGVE-ESTQKIS---- 64

Query:    57 WMRDPNTGNWIPESQFNQIDAADLRDQLL 85
             W+ DP TG + PE+  N+IDAA+LR  LL
Sbjct:    65 WVPDPKTGYYRPETGSNEIDAAELRAALL 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.36    30
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  111 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.19u 0.17s 9.36t   Elapsed:  00:00:00
  Total cpu time:  9.19u 0.17s 9.36t   Elapsed:  00:00:00
  Start:  Thu May  9 17:17:01 2013   End:  Thu May  9 17:17:01 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009790 "embryo development" evidence=ISS

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0006979 "response to oxidative stress" evidence=RCA;IMP

GO:0042631 "cellular response to water deprivation" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam03242	94	pfam03242, LEA_3, Late embryogenesis abundant prot	2e-15

>gnl|CDD|217449 pfam03242, LEA_3, Late embryogenesis abundant protein

 Score = 65.2 bits (159), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 1  MASKFSNSFLLLRF---------CRR--SNAVAAGNVGGKQPAAAEVMRKMTDMKAESVC 49
          MA   SN+ LL             RR  + A AA   G  +  AA            S  
Sbjct: 1  MARSLSNAKLLSALVADGVSAAVHRRGYAAAAAAMRSGATRGGAAREAEMRPKAGEGSG- 59

Query: 50 GVEKEEFWMRDPNTGNWIPESQFNQIDAADLRDQLL 85
                 W+ DP TG + PE+  N+ID A+LR  LL
Sbjct: 60 --AATSSWVPDPVTGYYRPENHANEIDPAELRAMLL 93

Members of this family are similar to late embryogenesis abundant proteins. Members of the family have been isolated in a number of different screens. However, the molecular function of these proteins remains obscure. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PF03242	93	LEA_3: Late embryogenesis abundant protein; InterP	100.0
PF02736	42	Myosin_N: Myosin N-terminal SH3-like domain; Inter	86.61

>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []

Probab=100.00  E-value=1.1e-38  Score=216.88  Aligned_cols=83  Identities=36%  Similarity=0.500  Sum_probs=61.4

Q ss_pred             Ccccchh---------hhhhhhhhhhhhhHhhhcccCCCchHH-HHHHHhhhhhhhhccccccccccccCCCCccccCCC
Q 034497            1 MASKFSN---------SFLLLRFCRRSNAVAAGNVGGKQPAAA-EVMRKMTDMKAESVCGVEKEEFWMRDPNTGNWIPES   70 (93)
Q Consensus         1 MArs~sn---------~~lsl~~~RRgYaaAA~~~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~WmpDP~TG~y~Pen   70 (93)
                      |||||||         +.|+++++||||+++++.  +.+++.. .+.++. +...+.++..++++|||||||||||||||
T Consensus         1 MArsls~ak~lsal~~~~~s~~~~rRgYaaaA~~--~~~sa~r~g~~~~~-~~~~~~~~~~~~~~~W~pDPvTGyyrPen   77 (93)
T PF03242_consen    1 MARSLSNAKVLSALVSDAFSSLISRRGYAAAAAA--VRSSAARGGAAGKA-KMASKAGEDSKEKSSWMPDPVTGYYRPEN   77 (93)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHhhcccccccccc-hhhhhcccccccccccccCCCCccccCCC
Confidence            9999999         567888899999999984  2221100 011111 11122233478899999999999999999


Q ss_pred             CcCcCCHHHHHHhhCC
Q 034497           71 QFNQIDAADLRDQLLP   86 (93)
Q Consensus        71 ~~~e~D~aeLR~~lL~   86 (93)
                      ||+|||+||||++||+
T Consensus        78 ~~~EiD~AeLR~~lL~   93 (93)
T PF03242_consen   78 HFGEIDAAELRAKLLK   93 (93)
T ss_pred             CCCCCCHHHHHHHHhC
Confidence            9999999999999996

This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress

>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold

Probab=86.61  E-value=0.23  Score=28.78  Aligned_cols=13  Identities=31%  Similarity=0.662  Sum_probs=10.6

Q ss_pred             ccccccCCCCccc
Q 034497           54 EEFWMRDPNTGNW   66 (93)
Q Consensus        54 ~~~WmpDP~TG~y   66 (93)
                      +.-|+|||..||=
T Consensus         2 ~~vWvpD~~egfv   14 (42)
T PF02736_consen    2 KWVWVPDPKEGFV   14 (42)
T ss_dssp             TEEEEEESSSSEE
T ss_pred             CEEEEeCCcccEE
Confidence            3469999999984

It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2mysa1	46	Myosin S1 fragment, N-terminal domain {Chicken (Ga	83.88

>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.88  E-value=0.14  Score=28.94  Aligned_cols=14  Identities=14%  Similarity=0.249  Sum_probs=11.7

Q ss_pred             cccccccCCCCccc
Q 034497           53 KEEFWMRDPNTGNW   66 (93)
Q Consensus        53 ~~~~WmpDP~TG~y   66 (93)
                      ++..|||||+-||=
T Consensus         2 Kk~vwVpD~ke~yv   15 (46)
T d2mysa1           2 KSSVFVVHPKQSFV   15 (46)
T ss_dssp             TTEEEEECSSSSEE
T ss_pred             CceEEcccCcccEE
Confidence            46679999999984