Citrus Sinensis ID: 034523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MAIRFLRIVNAKQALRRALMVseastvpkghLAVYVGEIeksrfvvpvsylkhpsfQNLLSQAEEefgfdhpmggltipcseKVFMDLTSRL
Flexible Loop (DISEMBL)
mairflriVNAKQALRRALmvseastvpkgHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Low Complexity Region (SEG)
MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Disordered region (IsUnstruct)
**IRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFM******
Disordered Region (DISOPRED)
*AIR****V*********************HLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Disordered Region (DISEMBL)
MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Disordered Region (DISPRO)
*AIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
P33081	82	Auxin-induced protein 15A	no	no	0.815	0.914	0.696	3e-24
P33082	82	Auxin-induced protein X15	no	no	0.815	0.914	0.658	5e-23
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.847	0.847	0.630	1e-21
P33080	92	Auxin-induced protein X10	no	no	0.760	0.760	0.647	2e-21
P33079	93	Auxin-induced protein 10A	no	no	0.978	0.967	0.543	2e-21
P33083	90	Auxin-induced protein 6B	no	no	0.760	0.777	0.704	3e-21

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 64/79 (81%), Gaps = 4/79 (5%)

Query: 14 ALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPM 73
           +R+A   S+A+  PKG+LAVYVGE  K RFV+PVSYL  PSFQ+LLSQAEEEFG+DHPM
Sbjct: 7  GIRKA---SKAADAPKGYLAVYVGEKLK-RFVIPVSYLNQPSFQDLLSQAEEEFGYDHPM 62

Query: 74 GGLTIPCSEKVFMDLTSRL 92
          GGLTIPCSE VF  +TS L
Sbjct: 63 GGLTIPCSEDVFQCITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 4/79 (5%)

Query: 14 ALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPM 73
           +R+A   S A   PKG+LAVYVGE  K RFV+PVSY+  PSFQ+LL+QAEEEFG+DHPM
Sbjct: 7  GIRKA---SNAVDAPKGYLAVYVGEKMK-RFVIPVSYMNQPSFQDLLTQAEEEFGYDHPM 62

Query: 74 GGLTIPCSEKVFMDLTSRL 92
          GGLTIPCSE+VF  +T  L
Sbjct: 63 GGLTIPCSEEVFQRITCCL 81

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 64/84 (76%), Gaps = 6/84 (7%)

Query: 14 ALRRALMV-SEAST----VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFG 68
           +R+ L   +EAS+     PKG+LAVYVGE  K RFV+PVS+L  P FQ+LLSQAEEEFG
Sbjct: 7  GIRKTLSARNEASSKVLDAPKGYLAVYVGENMK-RFVIPVSHLNQPLFQDLLSQAEEEFG 65

Query: 69 FDHPMGGLTIPCSEKVFMDLTSRL 92
          +DHPMGGLTIPCSE +F  +TS L
Sbjct: 66 YDHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%), Gaps = 1/71 (1%)

Query: 22 SEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCS 81
          S++  VPKG+L VYVG+ +  RF++PVSYL  PSFQ+LL+QAEEEFG+DHPMGGLTIPC 
Sbjct: 20 SKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCK 78

Query: 82 EKVFMDLTSRL 92
          E  F+ +TS L
Sbjct: 79 EDEFLTVTSHL 89

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          M  R   IV  + +       S+   VPKG+ AVYVG+ +  RF +PVSYL  PSFQ LL
Sbjct: 1  MGFRIAGIVR-RTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELL 58

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFG+DHPMGGLTIPC E+ F+++T+ L
Sbjct: 59 SQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 57/71 (80%), Gaps = 1/71 (1%)

Query: 22 SEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCS 81
          S+A  V KG+LAVYVGE +  RFV+PVSYL  PSFQ+LLSQAEEEFG+ HP GGLTIPCS
Sbjct: 20 SKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCS 78

Query: 82 EKVFMDLTSRL 92
          E VF  +TS L
Sbjct: 79 EDVFQHITSFL 89

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
297744698	107	unnamed protein product [Vitis vinifera]	1.0	0.859	0.728	4e-34
359474902	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.739	4e-34
225427862	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.728	8e-34
225427834	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.728	1e-33
359474898	95	PREDICTED: auxin-induced protein X15-lik	1.0	0.968	0.728	1e-33
297744700	136	unnamed protein product [Vitis vinifera]	0.967	0.654	0.741	1e-33
225427852	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.728	2e-33
359475065	95	PREDICTED: auxin-induced protein X15 [Vi	1.0	0.968	0.717	2e-33
359475067	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.706	1e-32
225427854	95	PREDICTED: auxin-induced protein 10A5 [V	1.0	0.968	0.706	3e-32

>gi|297744698|emb|CBI37960.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 78/92 (84%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE EK RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT ++
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCKI 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474902|ref|XP_002276058.2| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147776039|emb|CAN65270.1| hypothetical protein VITISV_040137 [Vitis vinifera]

 Score =  148 bits (374), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 68/92 (73%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE EK RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETEKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427862|ref|XP_002272231.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|359474896|ref|XP_003631552.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera] gi|147804680|emb|CAN62608.1| hypothetical protein VITISV_016869 [Vitis vinifera]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427834|ref|XP_002271501.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474898|ref|XP_003631553.1| PREDICTED: auxin-induced protein X15-like [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTCSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744700|emb|CBI37962.3| unnamed protein product [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 76/89 (85%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPESTNVPKGHVPVYVGEAQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLT 89
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLT 89

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427852|ref|XP_002276227.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSLESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFIDLTYSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475065|ref|XP_003631579.1| PREDICTED: auxin-induced protein X15 [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 77/92 (83%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAI F RI+ AKQ LRR L  +E++ VPKGH+ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIHFQRIIPAKQILRRILPSAESTNVPKGHVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQA EEFGFDHP+GGLTIPC E+ F+DLT RL
Sbjct: 61 SQAAEEFGFDHPLGGLTIPCREEAFIDLTCRL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475067|ref|XP_003631580.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 76/92 (82%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E++ VPKGH+ +YVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILSSPESTNVPKGHVPIYVGEYQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+G LTIPC E+ F+DLT  L
Sbjct: 61 SQAEEEFGFDHPLGALTIPCREEAFIDLTFSL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427854|ref|XP_002276250.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera] gi|147804682|emb|CAN62610.1| hypothetical protein VITISV_016871 [Vitis vinifera]

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/92 (70%), Positives = 76/92 (82%)

Query: 1  MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLL 60
          MAIRF RI+ AKQ LRR L   E + VPKG++ VYVGE +K RFV+P+SYLKHPSFQNLL
Sbjct: 1  MAIRFQRIIPAKQILRRILPSPEPTNVPKGYVPVYVGETQKKRFVIPISYLKHPSFQNLL 60

Query: 61 SQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          SQAEEEFGFDHP+GGLTIPC E+ F++LT  L
Sbjct: 61 SQAEEEFGFDHPLGGLTIPCREEAFINLTCGL 92

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	0.989	0.919	0.649	2.8e-27
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	1.0	0.938	0.627	3.5e-27
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.891	0.872	0.633	1.2e-24
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.923	0.934	0.613	5.3e-24
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.934	0.955	0.617	5.3e-24
TAIR|locus:2161558	88	AT5G18030 "AT5G18030" [Arabido	0.945	0.988	0.597	8.7e-24
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.858	0.752	0.650	2.9e-23
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.902	0.922	0.6	3.8e-23
TAIR|locus:2161538	90	SAUR19 "AT5G18010" [Arabidopsi	0.934	0.955	0.595	6.1e-23
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.869	0.888	0.634	6.1e-23

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 63/97 (64%), Positives = 78/97 (80%)

Query:     1 MAIRFLRIV-NAKQALRRALMVSEAST-----VPKGHLAVYVGEIEKSRFVVPVSYLKHP 54
             MAIR  R++ ++KQ LR+A ++S +S+     VPKG+LAVYVGE    RFVVPVSYL  P
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    55 SFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR 91
             SFQ+LL +AEEEFGFDHPMGGLTIPCSE++F+DL SR
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 59/94 (62%), Positives = 75/94 (79%)

Query:     1 MAIRFLRIVNAKQALRRALMVSEAST-VPKGHLAVYVGEI-EKSRFVVPVSYLKHPSFQN 58
             MAIR  R++ + + L ++L  S  +  +PKGHLAVYVGE+ +K RFVVPV+YL HP FQ 
Sbjct:     1 MAIRISRVLQSSKQLLKSLSHSSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQK 60

Query:    59 LLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
             LL +AEEEFGFDHPMGGLTIPC+E++F+DL SRL
Sbjct:    61 LLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 57/90 (63%), Positives = 71/90 (78%)

Query:     1 MAIRFLRIVNAKQALRRALMVSEASTVPKGHLAVYVGE-IE-KSRFVVPVSYLKHPSFQN 58
             MAIR  R++N+KQ+ +      + S VPKGH+AVYVGE +E K RFVVP+SYL HPSFQ 
Sbjct:     1 MAIRLSRVINSKQSQK------QQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQG 54

Query:    59 LLSQAEEEFGFDHPMGGLTIPCSEKVFMDL 88
             LLS+AEEEFGF+HP+GGLTIPC E+ F+ L
Sbjct:    55 LLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/88 (61%), Positives = 69/88 (78%)

Query:     5 FLR-IVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQA 63
             F+R ++ AK+ L R+   + AS  PKG LAVYVGE +K R++VP+SYL  PSFQ LLS++
Sbjct:     3 FVRSLLGAKKILSRS--TTAASAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKS 60

Query:    64 EEEFGFDHPMGGLTIPCSEKVFMDLTSR 91
             EEEFGFDHPMGGLTIPC E  F+++TSR
Sbjct:    61 EEEFGFDHPMGGLTIPCPEDTFINVTSR 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 55/89 (61%), Positives = 68/89 (76%)

Query:     5 FLR-IVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQA 63
             F+R ++ AK+ L R+      S  PKG LAVYVGE +K R++VPVSYL  PSFQ LLS++
Sbjct:     3 FVRSLLGAKKILSRS--TGAGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKS 60

Query:    64 EEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
             EEEFGFDHPMGGLTIPC E  F+++TSRL
Sbjct:    61 EEEFGFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161558 AT5G18030 "AT5G18030" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/87 (59%), Positives = 66/87 (75%)

Query:     6 LRIVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEE 65
             + +V +    ++ L  S AS  PKG LAVYVGE +K R++VP+SYL  PSFQ LLS++EE
Sbjct:     1 MALVRSLLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEE 60

Query:    66 EFGFDHPMGGLTIPCSEKVFMDLTSRL 92
             EFGFDHPMGGLTIPC E  F+++TSRL
Sbjct:    61 EFGFDHPMGGLTIPCPEDTFINVTSRL 87

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/83 (65%), Positives = 64/83 (77%)

Query:    14 ALRRALMVSEASTVPKGHLAVYVGE---IEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD 70
             A R     S +  VPKGH+AVYVGE   +EK RFVVP+S+L HPSF+  LS+AEEEFGF+
Sbjct:    22 ANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFN 81

Query:    71 HPMGGLTIPCSEKVFMDL-TSRL 92
             HPMGGLTIPC E+VF+DL  SRL
Sbjct:    82 HPMGGLTIPCREEVFLDLIASRL 104

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 51/85 (60%), Positives = 66/85 (77%)

Query:     8 IVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEF 67
             ++ AK+ L R+   +  S  PKG LAVYVGE +K R++VP+SYL  PSFQ LLS++E+EF
Sbjct:     7 LLGAKKILSRS--TAAVSAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEF 64

Query:    68 GFDHPMGGLTIPCSEKVFMDLTSRL 92
             GFDHPMGGLTIPC E  F+++TSRL
Sbjct:    65 GFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161538 SAUR19 "AT5G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 53/89 (59%), Positives = 68/89 (76%)

Query:     5 FLR-IVNAKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQA 63
             F+R ++ AK+ L R+   +  S  PKG LAVYVGE +K R++VP+SYL  PSFQ LLS++
Sbjct:     3 FVRSLLGAKKILSRS--TAAGSAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKS 60

Query:    64 EEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
             EEEFGF HPMGGLTIPC E  F+++TSRL
Sbjct:    61 EEEFGFAHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/82 (63%), Positives = 64/82 (78%)

Query:    11 AKQALRRALMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFD 70
             AK+ L R+   +  S  PKG LAVYVGE +K R++VP+SYL  PSFQ LLS++EEEFGFD
Sbjct:    10 AKKILSRS--AAAVSAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFD 67

Query:    71 HPMGGLTIPCSEKVFMDLTSRL 92
             HPMGGLTIPC E  F+++TSRL
Sbjct:    68 HPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.6309	0.8478	0.8478	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035997001 SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgun sequence); (95 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	92
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-36
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-31
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	5e-31
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	9e-25

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  117 bits (296), Expect = 3e-36
 Identities = 52/100 (52%), Positives = 60/100 (60%), Gaps = 10/100 (10%)

Query: 1  MAIRFLRIVNAKQALRRA--------LMVSEASTVPKGHLAVYVGEIEKSRFVVPVSYLK 52
          MA R  +  +AK+ +  A           S ++ VPKGH AVYVGE E  RFVVP+SYL 
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 53 HPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL 92
          HP FQ LL +AEEEFGFD   GGLTIPC   VF  L   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  105 bits (263), Expect = 3e-31
 Identities = 45/66 (68%), Positives = 52/66 (78%), Gaps = 2/66 (3%)

Query: 27  VPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFM 86
           VPKGH  VYVGE  +SR++VP+S+L HP FQ+LL QAEEEFGFDH M GLTIPC E VF 
Sbjct: 40  VPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDM-GLTIPCEEVVFR 97

Query: 87  DLTSRL 92
            LTS +
Sbjct: 98  SLTSMI 103

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  104 bits (261), Expect = 5e-31
 Identities = 52/75 (69%), Positives = 62/75 (82%), Gaps = 4/75 (5%)

Query: 22  SEASTVPKGHLAVYVGE---IEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTI 78
           S +  VPKGH+AVYVGE   +EK RFVVP+S+L HPSF+  LS+AEEEFGF+HPMGGLTI
Sbjct: 30  SSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTI 89

Query: 79  PCSEKVFMDL-TSRL 92
           PC E+VF+DL  SRL
Sbjct: 90  PCREEVFLDLIASRL 104

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 89.0 bits (220), Expect = 9e-25
 Identities = 43/70 (61%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 22  SEASTVPKGHLAVYVGE-IEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPC 80
           + +  VPKGH+AVYVGE +EK RFVVP+SYL HP F+  L++AEEE GF H MGGLTIPC
Sbjct: 34  TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPC 93

Query: 81  SEKVFMDLTS 90
            E+ F+ L +
Sbjct: 94  REESFLHLIT 103

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	82.18
PRK02899	197	adaptor protein; Provisional	82.17

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=227.41  Aligned_cols=90  Identities=57%  Similarity=0.925  Sum_probs=82.8

Q ss_pred             Ccccchh----HHHHHHHHHHhhhhccc---------cCCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhc
Q 034523            1 MAIRFLR----IVNAKQALRRALMVSEA---------STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEF   67 (92)
Q Consensus         1 m~~~~~~----~~~~k~~lkr~~~~~k~---------~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   67 (92)
                      |||++.+    ++++||+||||+|.++.         .+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            7888664    56899999999998654         47899999999998 8999999999999999999999999999


Q ss_pred             CCcCCCCceeeeCCHHHHHHHHhcC
Q 034523           68 GFDHPMGGLTIPCSEKVFMDLTSRL   92 (92)
Q Consensus        68 G~~~~~G~L~iPC~~~~Fe~vl~~L   92 (92)
                      ||+|+ |+|+|||+++.|++++|+|
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHh
Confidence            99998 8999999999999999986

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=221.27  Aligned_cols=90  Identities=61%  Similarity=1.058  Sum_probs=81.3

Q ss_pred             CcccchhHHHH-HHHHHHhhhhccc--------cCCCCCeEEEEeecC---cceEEEEEccCCCcHHHHHHHHhHHHhcC
Q 034523            1 MAIRFLRIVNA-KQALRRALMVSEA--------STVPKGHLAVYVGEI---EKSRFVVPVSYLKHPSFQNLLSQAEEEFG   68 (92)
Q Consensus         1 m~~~~~~~~~~-k~~lkr~~~~~k~--------~~vpkG~~aVyVG~~---~~~RfvVp~~~L~hP~F~~LL~~aeeEfG   68 (92)
                      ||++.++|.+. ||+|+|++ .+++        .+|||||||||||++   +++||+||++|||||.|++||++||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG   79 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG   79 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            99999999865 99999998 4322        589999999999972   58999999999999999999999999999


Q ss_pred             CcCCCCceeeeCCHHHHHHHHhc
Q 034523           69 FDHPMGGLTIPCSEKVFMDLTSR   91 (92)
Q Consensus        69 ~~~~~G~L~iPC~~~~Fe~vl~~   91 (92)
                      |+|++|+|+|||+++.|++++++
T Consensus        80 f~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         80 FNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCCEEeeCCHHHHHHHHHh
Confidence            99966999999999999999874

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=210.23  Aligned_cols=91  Identities=54%  Similarity=0.928  Sum_probs=81.2

Q ss_pred             CcccchhHHHHHHHHHHhhhhccc------------cCCCCCeEEEEeec-CcceEEEEEccCCCcHHHHHHHHhHHHhc
Q 034523            1 MAIRFLRIVNAKQALRRALMVSEA------------STVPKGHLAVYVGE-IEKSRFVVPVSYLKHPSFQNLLSQAEEEF   67 (92)
Q Consensus         1 m~~~~~~~~~~k~~lkr~~~~~k~------------~~vpkG~~aVyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeeEf   67 (92)
                      ||+....+++.||++|-.+...|+            .+|||||+|||||+ ++++||+||++|||||+|++||++|||||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEf   80 (108)
T PLN03219          1 MGLMRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEEC   80 (108)
T ss_pred             CchHHHHHhhHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHh
Confidence            788888899999998866555432            56999999999998 46999999999999999999999999999


Q ss_pred             CCcCCCCceeeeCCHHHHHHHHhc
Q 034523           68 GFDHPMGGLTIPCSEKVFMDLTSR   91 (92)
Q Consensus        68 G~~~~~G~L~iPC~~~~Fe~vl~~   91 (92)
                      ||+|++|+|+|||+++.|++++++
T Consensus        81 Gf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         81 GFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCEEEeCCHHHHHHHHHh
Confidence            999866999999999999999974

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.5e-36  Score=202.64  Aligned_cols=66  Identities=70%  Similarity=1.112  Sum_probs=64.0

Q ss_pred             cCCCCCeEEEEeecCcceEEEEEccCCCcHHHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhcC
Q 034523           25 STVPKGHLAVYVGEIEKSRFVVPVSYLKHPSFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSRL   92 (92)
Q Consensus        25 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~L   92 (92)
                      .++|+||+|||||+ +++||+||++|||||+|++||++|||||||+++ |+|+|||+++.|++++|+|
T Consensus        34 ~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   34 SDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             CCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHh
Confidence            77899999999998 899999999999999999999999999999997 9999999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=82.18  E-value=1  Score=28.53  Aligned_cols=54  Identities=22%  Similarity=0.223  Sum_probs=39.0

Q ss_pred             EEeecCcceEEEEEccCCC-cH--HHHHHHHhHHHhcCCcCCCCceeeeCCHHHHHHHHhc
Q 034523           34 VYVGEIEKSRFVVPVSYLK-HP--SFQNLLSQAEEEFGFDHPMGGLTIPCSEKVFMDLTSR   91 (92)
Q Consensus        34 VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG~~~~~G~L~iPC~~~~Fe~vl~~   91 (92)
                      +=||.   ++|.++.+-|. +|  .|..+++....... +.++|.+-|-++...|++|+.-
T Consensus         3 lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~-~~~~~~~fiDRdp~~F~~IL~y   59 (94)
T PF02214_consen    3 LNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDDY-DDDDGEYFIDRDPELFEYILNY   59 (94)
T ss_dssp             EEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGGE-ETTTTEEEESS-HHHHHHHHHH
T ss_pred             EEECC---EEEEEcHHHHhhCCCChhhhHHhhcccccc-CCccceEEeccChhhhhHHHHH
Confidence            44775   89999998887 54  68888886532222 2234899999999999999864

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=82.17  E-value=1.2  Score=32.99  Aligned_cols=24  Identities=25%  Similarity=0.726  Sum_probs=20.4

Q ss_pred             HHHHHHHHhHHHhcCCcCCCCceee
Q 034523           54 PSFQNLLSQAEEEFGFDHPMGGLTI   78 (92)
Q Consensus        54 P~F~~LL~~aeeEfG~~~~~G~L~i   78 (92)
                      -+|.++|++|..|+||.-+ |||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccC-CeEEE
Confidence            3577779999999999976 99976

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00