Citrus Sinensis ID: 034588

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccEEEEEEcccccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGVTKEKVESTLtsklnpshlevidtsggcgaKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA
Flexible Loop (DISEMBL)
mgvtkekvestltsklnpshlevIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA
Low Complexity Region (SEG)
MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA
Disordered region (IsUnstruct)
********************LEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEE****I************************
Disordered Region (DISOPRED)
*****EKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMT**************
Disordered Region (DISEMBL)
**************KLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAM***************
Disordered Region (DISPRO)
**VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	90	2.2.26 [Sep-21-2011]
O14280	84	Uncharacterized bolA-like	yes	no	0.9	0.964	0.487	2e-16
Q9USK1	116	Uncharacterized bolA-like	yes	no	0.733	0.568	0.484	2e-14
Q9H3K6	86	BolA-like protein 2 OS=Ho	yes	no	0.933	0.976	0.430	4e-13
Q8BGS2	86	BolA-like protein 2 OS=Mu	yes	no	0.922	0.965	0.435	7e-13
P53082	120	Fe repressor of activatio	yes	no	0.8	0.6	0.434	3e-10
Q3T138	135	BolA-like protein 1 OS=Bo	no	no	0.933	0.622	0.402	6e-10
Q56585	102	Protein BolA homolog OS=V	N/A	no	0.911	0.803	0.388	1e-09
Q53S33	107	BolA-like protein 3 OS=Ho	no	no	0.566	0.476	0.529	2e-09
Q8CEI1	110	BolA-like protein 3 OS=Mu	no	no	0.722	0.590	0.469	2e-09
Q3SZ84	110	BolA-like protein 3 OS=Bo	no	no	0.566	0.463	0.529	3e-09

>sp|O14280|YETB_SCHPO Uncharacterized bolA-like protein C8C9.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8C9.11 PE=3 SV=2

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 3  VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
          V  +++E  + + L P+H+E+ D SGGCG  FE+ IVS  FEGK  LARHRLVN  L+E 
Sbjct: 2  VNAQQLELLIQNTLEPTHIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEV 61

Query: 63 MKQIHALSIKKAMTPEQWKQQQ 84
          +K IHA + +K  +P QW+  Q
Sbjct: 62 IKDIHAFT-QKCYSPAQWEALQ 82

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9USK1|YJ2B_SCHPO Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.11c PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 50/66 (75%)

Query: 6  EKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQ 65
           +++  LT KL+PS L VID SGGCG+ +++ I S+ F+GK  LA+HRLVN+ L+EE++ 
Sbjct: 34 RRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIRN 93

Query: 66 IHALSI 71
          +H L++
Sbjct: 94 MHGLNL 99

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9H3K6|BOLA2_HUMAN BolA-like protein 2 OS=Homo sapiens GN=BOLA2 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
          M ++ E +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVNA L
Sbjct: 1  MELSAEYLREKLQRDLEAEHVEVEDTTLNRCSCSFRVLVVSAKFEGKPLLQRHRLVNACL 60

Query: 60 EEEMKQIHALSIKKAMTPEQWKQQQE 85
           EE+  IHA   +K +TP+QW ++++
Sbjct: 61 AEELPHIHAFE-QKTLTPDQWARERQ 85

Homo sapiens (taxid: 9606)

>sp|Q8BGS2|BOLA2_MOUSE BolA-like protein 2 OS=Mus musculus GN=Bola2 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
          M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L
Sbjct: 1  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 60

Query: 60 EEEMKQIHALSIKKAMTPEQWKQQQ 84
           EE+  IHA   +K +TPEQW +Q+
Sbjct: 61 AEELPHIHAFE-QKTLTPEQWTRQR 84

Mus musculus (taxid: 10090)

>sp|P53082|FRA2_YEAST Fe repressor of activation 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRA2 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 4/76 (5%)

Query: 5   KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK 64
           +E++ES +       H+ V D S GCG  F+I +VS+ F+GK  L R R VN A++EE++
Sbjct: 44  RERIESAIP---QVYHIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQ 100

Query: 65  QIHALSIKKAMTPEQW 80
           +IHA S  K  T E+W
Sbjct: 101 EIHAFSC-KCYTEEEW 115

Involved in the regulation of the iron regulon in response to decreased mitochondrial iron-sulfur cluster synthesis. May be involved in mitochondrial organization and biogenesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q3T138|BOLA1_BOVIN BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 8/92 (8%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAK------FEIEIVSEQFEGKRLLARHRL 54
           +G  +  + + L   LNP  LE+ + SGG          F + +VS +FEG   L RHRL
Sbjct: 29  IGPVEAAIRTKLEQALNPEVLELRNESGGHAVPPGSETHFRVAVVSSRFEGLSPLQRHRL 88

Query: 55  VNAALEEEMK-QIHALSIKKAMTPEQWKQQQE 85
           V+AAL EE+   +HAL+I +A TP QWK+  +
Sbjct: 89  VHAALSEELAGPVHALAI-QARTPAQWKENPQ 119

Bos taurus (taxid: 9913)

>sp|Q56585|BOLA_VIBAL Protein BolA homolog OS=Vibrio alginolyticus GN=bolA PE=3 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 57/90 (63%), Gaps = 8/90 (8%)

Query: 3  VTKEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRLVN 56
          + +E +E  L S+L PS+L+VI+ S       G  + F++ +VS+ F G+RL+ RHR V+
Sbjct: 1  MIQEIIEKKLHSELQPSYLKVINESYMHNVPPGSESHFKVIVVSDSFAGQRLIGRHRQVH 60

Query: 57 AALEEEM-KQIHALSIKKAMTPEQWKQQQE 85
            L +E+   IHAL+I    T E+WK++Q+
Sbjct: 61 QILADELDNHIHALAI-HTYTDEEWKREQD 89

Vibrio alginolyticus (taxid: 663)

>sp|Q53S33|BOLA3_HUMAN BolA-like protein 3 OS=Homo sapiens GN=BOLA3 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 41/51 (80%)

Query: 21  LEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSI 71
           ++V D SGGCGA +EI+I SE+F+ KR + +H++VN AL+EE+K++H L I
Sbjct: 50  IKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKEMHGLRI 100

Homo sapiens (taxid: 9606)

>sp|Q8CEI1|BOLA3_MOUSE BolA-like protein 3 OS=Mus musculus GN=Bola3 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 7   KVESTLTSKL-NPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQ 65
           KV   L  K    + ++V D SGGCGA +EI+I SE+F+ KR + +H++VN AL+EE+K 
Sbjct: 38  KVTQVLKEKFPRATAIQVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKG 97

Query: 66  IHALSI 71
           +H L I
Sbjct: 98  MHGLRI 103

Mus musculus (taxid: 10090)

>sp|Q3SZ84|BOLA3_BOVIN BolA-like protein 3 OS=Bos taurus GN=BOLA3 PE=3 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 40/51 (78%)

Query: 21  LEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSI 71
           ++V D SGGCGA +EI+I SE+F+ KR + +H++VN AL+EE+K +H L I
Sbjct: 53  IKVTDISGGCGAMYEIKIESEEFKEKRTVQQHQMVNQALKEEIKGMHGLRI 103

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
255562387	93	transcription regulator, putative [Ricin	0.955	0.924	0.906	3e-38
351726395	93	uncharacterized protein LOC100500634 [Gl	0.966	0.935	0.862	8e-38
225431595	93	PREDICTED: uncharacterized protein LOC10	0.955	0.924	0.860	7e-37
358248048	93	uncharacterized protein LOC100778528 [Gl	0.966	0.935	0.850	1e-36
284433786	93	putative transcription regulator [Jatrop	0.955	0.924	0.883	1e-36
330318580	90	bola-like family protein [Camellia sinen	0.966	0.966	0.850	3e-36
357519787	93	BolA-like protein [Medicago truncatula]	0.966	0.935	0.827	3e-36
449459240	94	PREDICTED: uncharacterized bolA-like pro	0.944	0.904	0.870	3e-36
297797489	95	hypothetical protein ARALYDRAFT_332687 [	0.977	0.926	0.806	3e-34
225431597	125	PREDICTED: uncharacterized protein LOC10	0.955	0.688	0.627	2e-32

>gi|255562387|ref|XP_002522200.1| transcription regulator, putative [Ricinus communis] gi|223538571|gb|EEF40175.1| transcription regulator, putative [Ricinus communis]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 81/86 (94%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VESTL +KLNPSHLEV DTSGGCGA F IEIVSEQFEGKRLL RHRLVNAALE
Sbjct: 1  MGVTKEQVESTLKTKLNPSHLEVTDTSGGCGASFAIEIVSEQFEGKRLLERHRLVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQES 86
          EEMKQIHALSIKKA+TPEQWKQQQES
Sbjct: 61 EEMKQIHALSIKKAVTPEQWKQQQES 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726395|ref|NP_001237125.1| uncharacterized protein LOC100500634 [Glycine max] gi|255630800|gb|ACU15761.1| unknown [Glycine max]

 Score =  160 bits (405), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 75/87 (86%), Positives = 83/87 (95%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VES+L +KLNPSHLEV+DTSGGCGA F +EIVSEQFEGKRLL RHR+VNAALE
Sbjct: 1  MGVTKEEVESSLKAKLNPSHLEVVDTSGGCGASFVVEIVSEQFEGKRLLERHRMVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQESN 87
          EEMKQIHALSIKKA+TP+QWKQQQESN
Sbjct: 61 EEMKQIHALSIKKAVTPDQWKQQQESN 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431595|ref|XP_002282721.1| PREDICTED: uncharacterized protein LOC100245396 isoform 1 [Vitis vinifera] gi|296088614|emb|CBI37605.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (397), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 81/86 (94%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE VES+LTS +NPSHLEVIDTSGGCGA F IEIVSEQFEGKRLL RHR+VNAAL+
Sbjct: 1  MGVTKEDVESSLTSVMNPSHLEVIDTSGGCGASFAIEIVSEQFEGKRLLERHRMVNAALQ 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQES 86
          EE+KQIHALSIKKA+TPEQWKQQQE+
Sbjct: 61 EELKQIHALSIKKALTPEQWKQQQEA 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248048|ref|NP_001239800.1| uncharacterized protein LOC100778528 [Glycine max] gi|255640600|gb|ACU20585.1| unknown [Glycine max]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 81/87 (93%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VE +L +KLNPSHLEV+D SGGCGA F +EIVSEQFEGKRLL RHR+VNAALE
Sbjct: 1  MGVTKEQVELSLKAKLNPSHLEVVDISGGCGASFVVEIVSEQFEGKRLLERHRMVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQESN 87
          EEMKQIHALSIKKA+TPEQWKQQQESN
Sbjct: 61 EEMKQIHALSIKKAVTPEQWKQQQESN 87

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433786|gb|ADB85099.1| putative transcription regulator [Jatropha curcas]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/86 (88%), Positives = 79/86 (91%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VES L SKLNPSHLEVIDTSGGCGA F +EIVSEQFEGKRLL RHRLVNAALE
Sbjct: 1  MGVTKEQVESALKSKLNPSHLEVIDTSGGCGASFAVEIVSEQFEGKRLLERHRLVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQES 86
          EEMKQIHALSIKKA+TP QWKQQ ES
Sbjct: 61 EEMKQIHALSIKKAVTPGQWKQQLES 86

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|330318580|gb|AEC10959.1| bola-like family protein [Camellia sinensis]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/87 (85%), Positives = 82/87 (94%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVT+E V+S+LTSKLNPSHLEVIDTSGGCGA F IEIVSE+FEGKRLL RHR+VNAAL 
Sbjct: 1  MGVTEEVVKSSLTSKLNPSHLEVIDTSGGCGASFAIEIVSEKFEGKRLLERHRMVNAALA 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQESN 87
          EEMK+IHALSIKKA+TPEQWKQQQES+
Sbjct: 61 EEMKEIHALSIKKALTPEQWKQQQESS 87

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519787|ref|XP_003630182.1| BolA-like protein [Medicago truncatula] gi|355524204|gb|AET04658.1| BolA-like protein [Medicago truncatula] gi|388511529|gb|AFK43826.1| unknown [Medicago truncatula]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 81/87 (93%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VES+L SKLNPSHLEV D SGGCG+ F +EIVSEQFEGKRLL RHR+VNAALE
Sbjct: 1  MGVTKEQVESSLNSKLNPSHLEVTDISGGCGSSFAVEIVSEQFEGKRLLERHRMVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQESN 87
          EEMK+IHALS+KKA+TPEQWK+QQESN
Sbjct: 61 EEMKEIHALSVKKAVTPEQWKKQQESN 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459240|ref|XP_004147354.1| PREDICTED: uncharacterized bolA-like protein C8C9.11-like [Cucumis sativus] gi|449525325|ref|XP_004169668.1| PREDICTED: uncharacterized bolA-like protein C8C9.11-like [Cucumis sativus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 74/85 (87%), Positives = 79/85 (92%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE++ESTLTSKLNP HLEV DTSGGCGA F I+IVSEQFEGKRLL RHRLVNAAL 
Sbjct: 1  MGVTKEQLESTLTSKLNPQHLEVTDTSGGCGASFVIDIVSEQFEGKRLLERHRLVNAALV 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQE 85
          EEMKQIHALSIKKA+TP+QWKQQQE
Sbjct: 61 EEMKQIHALSIKKALTPQQWKQQQE 85

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797489|ref|XP_002866629.1| hypothetical protein ARALYDRAFT_332687 [Arabidopsis lyrata subsp. lyrata] gi|297312464|gb|EFH42888.1| hypothetical protein ARALYDRAFT_332687 [Arabidopsis lyrata subsp. lyrata]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/88 (80%), Positives = 79/88 (89%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          MGVTKE+VE++LTSKLNP HLEVIDTSGGCGA F IEIVSEQFEGKRLL RHR+VNAALE
Sbjct: 1  MGVTKEQVEASLTSKLNPVHLEVIDTSGGCGASFVIEIVSEQFEGKRLLERHRIVNAALE 60

Query: 61 EEMKQIHALSIKKAMTPEQWKQQQESNA 88
          EEMK+IHALSIKKA TP+QWK   + +A
Sbjct: 61 EEMKEIHALSIKKAQTPQQWKPVSQDSA 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431597|ref|XP_002282729.1| PREDICTED: uncharacterized protein LOC100245396 isoform 2 [Vitis vinifera]

 Score =  142 bits (358), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 81/118 (68%), Gaps = 32/118 (27%)

Query: 1   MGVTKEKVESTLTSKLNPSHL--------------------------------EVIDTSG 28
           MGVTKE VES+LTS +NPSHL                                EVIDTSG
Sbjct: 1   MGVTKEDVESSLTSVMNPSHLAFSITPFSFSYSLSAINLILIWINILSFFVFQEVIDTSG 60

Query: 29  GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQES 86
           GCGA F IEIVSEQFEGKRLL RHR+VNAAL+EE+KQIHALSIKKA+TPEQWKQQQE+
Sbjct: 61  GCGASFAIEIVSEQFEGKRLLERHRMVNAALQEELKQIHALSIKKALTPEQWKQQQEA 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2178143	93	AT5G09830 [Arabidopsis thalian	0.955	0.924	0.755	2e-31
ASPGD|ASPL0000018240	131	AN3686 [Emericella nidulans (t	0.922	0.633	0.523	1.6e-17
POMBASE|SPAC8C9.11	84	SPAC8C9.11 "transcriptional re	0.9	0.964	0.487	2.3e-16
ZFIN|ZDB-GENE-050522-443	86	zgc:112271 "zgc:112271" [Danio	0.922	0.965	0.458	2.3e-16
POMBASE|SPCC4B3.11c	116	SPCC4B3.11c "mitochondrial tra	0.744	0.577	0.477	1.8e-14
MGI|MGI:1913412	86	Bola2 "bolA-like 2 (E. coli)"	0.922	0.965	0.435	1.3e-13
DICTYBASE|DDB_G0290027	87	DDB_G0290027 "bolA family prot	0.888	0.919	0.445	2.1e-13
ZFIN|ZDB-GENE-040801-76	122	bola1 "bolA homolog 1 (E. coli	0.8	0.590	0.5	1.5e-12
CGD|CAL0003310	122	orf19.6585 [Candida albicans (	0.755	0.557	0.426	1e-11
UNIPROTKB|Q5AGV3	122	CaO19.13938 "Putative uncharac	0.755	0.557	0.426	1e-11

TAIR|locus:2178143 AT5G09830 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 65/86 (75%), Positives = 76/86 (88%)

Query:     3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
             VTKE+VE++LTSKL P HLEVID SGGCG+ FE+E+VSEQFEGKRLL RHR+VNAALEEE
Sbjct:     2 VTKEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLERHRMVNAALEEE 61

Query:    63 MKQIHALSIKKAMTPEQWKQQQESNA 88
             MK+IHALSIKKA TP+QWK   + +A
Sbjct:    62 MKEIHALSIKKAQTPQQWKPPSQDSA 87

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006301 "postreplication repair" evidence=RCA

ASPGD|ASPL0000018240 AN3686 [Emericella nidulans (taxid:162425)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query:     3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
             VT + ++S L  +L   H+E+ D SGGCG  F+  IVS QFE K +LARHRLVN+ L+ E
Sbjct:    48 VTPDLLKSKLVEQLQAQHVEIEDLSGGCGQAFQAVIVSPQFEKKTMLARHRLVNSVLKAE 107

Query:    63 MKQIHALSIKKAMTPEQWKQQQES 86
             +  IHA +  K  TPEQW+QQQ S
Sbjct:   108 IAAIHAWT-PKCYTPEQWEQQQGS 130

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC8C9.11 SPAC8C9.11 "transcriptional repressor protein BolA domain (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/82 (48%), Positives = 55/82 (67%)

Query:     3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
             V  +++E  + + L P+H+E+ D SGGCG  FE+ IVS  FEGK  LARHRLVN  L+E 
Sbjct:     2 VNAQQLELLIQNTLEPTHIEIQDMSGGCGQNFEVIIVSPLFEGKSTLARHRLVNHKLQEV 61

Query:    63 MKQIHALSIKKAMTPEQWKQQQ 84
             +K IHA + +K  +P QW+  Q
Sbjct:    62 IKDIHAFT-QKCYSPAQWEALQ 82

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050522-443 zgc:112271 "zgc:112271" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 39/85 (45%), Positives = 59/85 (69%)

Query:     1 MGVTKEKVESTLTSKLNPSHLEVIDTSGG-CGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
             M VT + +   L +++   H++V DTS   C A F++ +VS QFEGK+LL RHR+VN  L
Sbjct:     1 MSVTPDLIRKKLIAEIGAIHVDVEDTSPSRCAASFKVLVVSPQFEGKQLLQRHRMVNNCL 60

Query:    60 EEEMKQIHALSIKKAMTPEQWKQQQ 84
              +E+K+IHA   +K +TPEQW++Q+
Sbjct:    61 AQELKEIHAFE-QKTLTPEQWEKQK 84

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC4B3.11c SPCC4B3.11c "mitochondrial transcriptional repressor protein BolA domain (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 32/67 (47%), Positives = 51/67 (76%)

Query:     5 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK 64
             + +++  LT KL+PS L VID SGGCG+ +++ I S+ F+GK  LA+HRLVN+ L+EE++
Sbjct:    33 ERRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRLVNSILKEEIR 92

Query:    65 QIHALSI 71
              +H L++
Sbjct:    93 NMHGLNL 99

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913412 Bola2 "bolA-like 2 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/85 (43%), Positives = 51/85 (60%)

Query:     1 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
             M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L
Sbjct:     1 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 60

Query:    60 EEEMKQIHALSIKKAMTPEQWKQQQ 84
              EE+  IHA   +K +TPEQW +Q+
Sbjct:    61 AEELPHIHAFE-QKTLTPEQWTRQR 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0290027 DDB_G0290027 "bolA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 37/83 (44%), Positives = 56/83 (67%)

Query:     3 VTKEKVESTLTSKLNPSH--LEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
             V+ E +E  L  K +     +++ID SGGCGAKF + I S QF+G  LL RHR+VN  L+
Sbjct:     2 VSVEDIEKRLKLKFSSEDDKIKIIDESGGCGAKFLVAIGSSQFDGVSLLERHRIVNELLK 61

Query:    61 EEMKQIHALSIKKAMTPEQWKQQ 83
             EE+ QIHA+++K   T +Q++++
Sbjct:    62 EEISQIHAITLK-TWTLKQYEEK 83

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-040801-76 bola1 "bolA homolog 1 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query:     8 VESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEE 61
             + + L+  LNP HLEVI+ S       G  + F++ +VS QFEG  LL RHRLVN  L+E
Sbjct:    13 IRTKLSQALNPEHLEVINESHMHAVPPGSESHFKVLVVSLQFEGLSLLQRHRLVNETLKE 72

Query:    62 EMKQ-IHALSIKKAMTPEQW 80
             E+   IHALSI+ A TP+QW
Sbjct:    73 ELSTCIHALSIQ-AKTPQQW 91

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0003310 orf19.6585 [Candida albicans (taxid:5476)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query:     5 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK 64
             + K+ + L  +LNP +L++ D SGGCG+ F I I SE+F+G  ++ +HRLVN  L++E+K
Sbjct:    51 ESKIYNILQQELNPVNLKIKDVSGGCGSMFSIFIESEKFKGLTMIKQHRLVNEILKDEIK 110

Query:    65 QIHALSIK 72
             + H L ++
Sbjct:   111 KWHGLQLR 118

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5AGV3 CaO19.13938 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 29/68 (42%), Positives = 48/68 (70%)

Query:     5 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK 64
             + K+ + L  +LNP +L++ D SGGCG+ F I I SE+F+G  ++ +HRLVN  L++E+K
Sbjct:    51 ESKIYNILQQELNPVNLKIKDVSGGCGSMFSIFIESEKFKGLTMIKQHRLVNEILKDEIK 110

Query:    65 QIHALSIK 72
             + H L ++
Sbjct:   111 KWHGLQLR 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14280	YETB_SCHPO	No assigned EC number	0.4878	0.9	0.9642	yes	no
P0ABE3	BOLA_ECOL6	No assigned EC number	0.3225	0.9444	0.8095	yes	no
Q8BGS2	BOLA2_MOUSE	No assigned EC number	0.4352	0.9222	0.9651	yes	no
P0ABE4	BOLA_SHIFL	No assigned EC number	0.3225	0.9444	0.8095	yes	no
Q9H3K6	BOLA2_HUMAN	No assigned EC number	0.4302	0.9333	0.9767	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
pfam01722	72	pfam01722, BolA, BolA-like protein	3e-29
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	4e-24
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	4e-14
COG5007	80	COG5007, COG5007, Predicted transcriptional regula	1e-13

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 99.2 bits (248), Expect = 3e-29
 Identities = 40/71 (56%), Positives = 51/71 (71%), Gaps = 3/71 (4%)

Query: 12 LTSKLNPSHLEVIDTSG-GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQ-IHAL 69
          L + L P+HLEV D S  G G+ F++ +VS+ FEGK L+ RHRLV AAL+EE+   IHAL
Sbjct: 3  LEAALPPAHLEVEDESHKGDGSHFKVVVVSDAFEGKSLVKRHRLVYAALKEELASGIHAL 62

Query: 70 SIKKAMTPEQW 80
          SI K  TPE+W
Sbjct: 63 SI-KTYTPEEW 72

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 86.6 bits (215), Expect = 4e-24
 Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 9/91 (9%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTS-------GGCGAKFEIEIVSEQFEGKRLLARHR 53
          M + +E++E  L +   PS LE+ID S       GG G+ F++ IVSE F+GK L+ARHR
Sbjct: 1  MSIQRERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHR 60

Query: 54 LVNAALEEEMKQ-IHALSIKKAMTPEQWKQQ 83
          LV +AL++E+   IHAL++    TPE+WK +
Sbjct: 61 LVYSALKDELSGGIHALAL-HTYTPEEWKGK 90

Length = 90

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 61.7 bits (150), Expect = 4e-14
 Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 8/89 (8%)

Query: 5  KEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRLVNAA 58
          +E++E  L +   P  LEV+D S       G  + F++ +VS++F G+R L RHR++ + 
Sbjct: 4  REQIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYST 63

Query: 59 LEEEMK-QIHALSIKKAMTPEQWKQQQES 86
          L EE+   +HAL++    T ++W+  Q++
Sbjct: 64 LAEELSTTVHALAL-HTYTIKEWEGLQDT 91

Length = 105

>gnl|CDD|227340 COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]

 Score = 59.7 bits (145), Expect = 1e-13
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 7/80 (8%)

Query: 4  TKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM 63
            E+++S L + L    +EV     G G+ F++  VSE+F GK  + R +LV A L   +
Sbjct: 2  DNEEIKSLLENALPLEEVEV----EGDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYI 57

Query: 64 K--QIHALSIKKAMTPEQWK 81
             +IHALSI K  TP +W 
Sbjct: 58 ADNEIHALSI-KTYTPAEWA 76

Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PRK11628	105	transcriptional regulator BolA; Provisional	100.0
KOG3348	85	consensus BolA (bacterial stress-induced morphogen	100.0
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.98
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.97
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.97
KOG2313	100	consensus Stress-induced protein UVI31+ [Signal tr	99.93

>PRK11628 transcriptional regulator BolA; Provisional

Probab=100.00  E-value=1.4e-34  Score=192.35  Aligned_cols=84  Identities=35%  Similarity=0.698  Sum_probs=78.5

Q ss_pred             cccHHHHHHHHhhcCCCCeEEEEeCC------CCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCcc
Q 034588            2 GVTKEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKA   74 (90)
Q Consensus         2 ~~~~~~I~~~l~~~l~~~~v~V~d~S------~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t   74 (90)
                      .|+.++|+++|+.+|+|.+|+|+|+|      +|+|+||+|+|||+.|+|||+|+|||+||++|+++|+ +||||+ |+|
T Consensus         1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g~~~Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~~~IHALs-i~t   79 (105)
T PRK11628          1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALA-LHT   79 (105)
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCCCCceEEEEEEChHhCCCCHHHHHHHHHHHHHHHHhCCcccee-eec
Confidence            37789999999999999999999999      3688999999999999999999999999999999999 699999 999


Q ss_pred             CCHHHHHHchhh
Q 034588           75 MTPEQWKQQQES   86 (90)
Q Consensus        75 ~tp~Ew~~~~~~   86 (90)
                      |||+||++++.+
T Consensus        80 ~tp~Ew~~~~~~   91 (105)
T PRK11628         80 YTIKEWEGLQDT   91 (105)
T ss_pred             CCHHHHHHhhCC
Confidence            999999976543

>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]

Probab=100.00  E-value=2e-33  Score=179.91  Aligned_cols=83  Identities=58%  Similarity=0.954  Sum_probs=80.4

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHH
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQW   80 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew   80 (90)
                      |...++.|+++|++.|.|.+|+|.|.|+|||+.|.|.|||+.|+|+|+|+|||+||.+|+++|+.||||+ ++|+||++|
T Consensus         1 m~~~e~~l~~~L~~~l~p~~v~V~D~SgGCG~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Eeik~iHalt-~kt~t~~~w   79 (85)
T KOG3348|consen    1 MTVTEERLEELLTEALEPEHVEVQDVSGGCGSMFDVVIVSAAFEGKSLLARHRLVNSILAEEIKEIHALT-IKTYTPEEW   79 (85)
T ss_pred             CcchHHHHHHHHHhhcCceEEEEEEcCCCccceEEEEEEccccCChHHHHHHHHHHHHHHHHHHHHhhhe-eeecChhhh
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HHch
Q 034588           81 KQQQ   84 (90)
Q Consensus        81 ~~~~   84 (90)
                      .+-.
T Consensus        80 ~~~~   83 (85)
T KOG3348|consen   80 SKAS   83 (85)
T ss_pred             cccc
Confidence            8643

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.98  E-value=1e-32  Score=179.26  Aligned_cols=81  Identities=49%  Similarity=0.853  Sum_probs=76.5

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCCC-------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhccc-ccccccC
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTSG-------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQ-IHALSIK   72 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~-------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~-IHAls~i   72 (90)
                      |.+..++|+++|+++|+|..++|.|+|+       |||+||+|+|||+.|+|+|+|+|||+||++|+|+|++ ||||+ |
T Consensus         1 m~i~~~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~g~~~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~~~iHALa-l   79 (90)
T COG0271           1 MSIQRERIEKKLRAAFPPSFLEIIDESHRHHGHAGGGGSHFKVVIVSEAFQGKSLVARHRLVYSALKDELSGGIHALA-L   79 (90)
T ss_pred             CCccHHHHHHHHHhcCCCceEEEEecccccccCCCCCCCeEEEEEEchhhCCccHHHHHHHHHHHHHHHHhccceeeE-e
Confidence            6677789999999999999999999996       6999999999999999999999999999999999995 99999 9


Q ss_pred             ccCCHHHHHH
Q 034588           73 KAMTPEQWKQ   82 (90)
Q Consensus        73 ~t~tp~Ew~~   82 (90)
                      +|+||+||+.
T Consensus        80 ~t~t~~e~~~   89 (90)
T COG0271          80 HTYTPEEWKG   89 (90)
T ss_pred             Eeeccchhcc
Confidence            9999999864

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.97  E-value=5.6e-32  Score=170.64  Aligned_cols=69  Identities=57%  Similarity=0.883  Sum_probs=62.3

Q ss_pred             HHhhcCCCCeEEEEeCCC------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHHH
Q 034588           11 TLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQW   80 (90)
Q Consensus        11 ~l~~~l~~~~v~V~d~S~------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~Ew   80 (90)
                      ||++.|+|+.++|.|+|.      ++|+||+|.|||+.|+|||+|+|||+||++|+++|+ +||||+ |+|+||+||
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~~g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i~~~iHAls-i~t~tp~Ew   76 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHAGGGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEIKDGIHALS-IKTYTPEEW   76 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-CCSSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHHGCTCSEEE-EEEE-HHHH
T ss_pred             ChhHhCCCcEEEEEECcccccCCCCCCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHhcCCceEEE-EEcCCcccC
Confidence            688999999999999992      249999999999999999999999999999999999 599999 999999999

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.97  E-value=1.4e-30  Score=165.01  Aligned_cols=77  Identities=38%  Similarity=0.606  Sum_probs=73.8

Q ss_pred             ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc--cccccccCccCCHHHH
Q 034588            3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK--QIHALSIKKAMTPEQW   80 (90)
Q Consensus         3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~--~IHAls~i~t~tp~Ew   80 (90)
                      |+.++|++.|++.||.++++|+    |+|+||.+++||+.|+|||+|+|||+||+.|.++|.  .||||| |+||||+||
T Consensus         1 M~~e~Ik~ll~~~L~~e~v~V~----Gdg~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAls-ikt~Tp~eW   75 (80)
T COG5007           1 MDNEEIKSLLENALPLEEVEVE----GDGSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALS-IKTYTPAEW   75 (80)
T ss_pred             CCHHHHHHHHHhcCCccEEEEe----cCCceEEEEEehHhhcCccHHHHHHHHHHHHHHHhhcCceEEEE-eeecCHHHh
Confidence            6789999999999999999998    899999999999999999999999999999999998  599999 999999999


Q ss_pred             HHch
Q 034588           81 KQQQ   84 (90)
Q Consensus        81 ~~~~   84 (90)
                      ++..
T Consensus        76 ~~~~   79 (80)
T COG5007          76 ARDR   79 (80)
T ss_pred             hhcc
Confidence            9764

>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-26  Score=151.95  Aligned_cols=78  Identities=41%  Similarity=0.640  Sum_probs=73.5

Q ss_pred             cccHHHHHHHHhhcCCCCeEEEEeCCC---------C---CcceEEEEEEccccCCCCHHHHHHHHHHHHHHhccc--cc
Q 034588            2 GVTKEKVESTLTSKLNPSHLEVIDTSG---------G---CGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQ--IH   67 (90)
Q Consensus         2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~---------~---~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~--IH   67 (90)
                      |.+...|+++|...|.|..+++.|+|+         |   .++||.|.|||+.|+|+|+|+||||||++|+|++++  +|
T Consensus         9 g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg~~~~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl~~~gvH   88 (100)
T KOG2313|consen    9 GPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKGMDGAETHFRVEVVSSAFEGLSLVKRHRLVYKALKEELAGTGVH   88 (100)
T ss_pred             CcHHHHHHHHhHhhcCcceEEEeeccccccccccccCCCCCccEEEEEEechhhCCccHHHHHHHHHHHHHHHhhcccee
Confidence            567899999999999999999999995         2   689999999999999999999999999999999983  99


Q ss_pred             ccccCccCCHHHH
Q 034588           68 ALSIKKAMTPEQW   80 (90)
Q Consensus        68 Als~i~t~tp~Ew   80 (90)
                      ||+ |.+.||+||
T Consensus        89 AL~-i~aKTP~e~  100 (100)
T KOG2313|consen   89 ALS-IMAKTPSEV  100 (100)
T ss_pred             EEE-eeccCCCCC
Confidence            999 999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	90
3o2e_A	105	Crystal Structure Of A Bol-Like Protein From Babesi		2e-19
2kdn_A	108	Solution Structure Of Pfe0790c, A Putative Bola-Lik		3e-16
1v9j_A	113	Solution Structure Of A Bola-Like Protein From Mus		1e-13
1v60_A	123	Solution Structure Of Bola1 Protein From Mus Muscul		3e-09
2dhm_A	107	Solution Structure Of The Bola Protein From Escheri		4e-09
1xs3_A	80	Solution Structure Analysis Of The Xc975 Protein Le		2e-06
3tr3_A	82	Structure Of A Bola Protein Homologue From Coxiella		6e-05

>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia Bovis Length = 105

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 3  VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
          V+K  VE  L S L+P  L+V D SGGCGA F   IVS+QFEGK LL R RLVN+A+  E
Sbjct: 23 VSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAE 82
Query: 63 MKQIHALSIKKAMTPEQW 80
          M QIHA ++ K +TP +W
Sbjct: 83 MPQIHAFTM-KCLTPGEW 99

>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like Protein From The Protozoan Parasite Plasmodium Falciparum Length = 108

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 8   VESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIH 67
           +E  L+S L P+ LE++D S GCG  F+  IVS  FE K+LL RHRLVN  L+EE++ IH
Sbjct: 29  IEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQNIH 88
Query: 68  ALSIKKAMTPEQWKQ 82
           A S+ K  TP ++ +
Sbjct: 89  AFSM-KCHTPLEYDK 102

>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus Musculus Length = 113

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
           M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L
Sbjct: 28  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87
Query: 60  EEEMKQIHALSIKKAMTPEQWKQQQ 84
            EE+  IHA   +K +TPEQW +Q+
Sbjct: 88  AEELPHIHAFE-QKTLTPEQWTRQR 111

>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus Length = 123

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 2   GVTKEKVESTLTSKLNPSHLEVIDTSGG----CGAK--FEIEIVSEQFEGKRLLARHRLV 55
           G  +  + + L   L+P  LE+ + SGG     G++  F + +VS +FEG   L RHRLV
Sbjct: 25  GPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLV 84
Query: 56  NAALEEEMK-QIHALSIKKAMTPEQWKQQQE 85
           + AL EE+   +HAL+I +A TP QW++  +
Sbjct: 85  HEALSEELAGPVHALAI-QAKTPAQWRENPQ 114

>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia Coli Length = 107

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Query: 5   KEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRLVNAA 58
           +E++E  L +   P  LEV+D S       G  + F++ +VS++F G+R L RHR++ + 
Sbjct: 11  RERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYST 70
Query: 59  LEEEMK-QIHALSIKKAMTPEQWKQQQESNAAA 90
           L EE+   +HAL++    T ++W+  Q++  A+
Sbjct: 71  LAEELSTTVHALAL-HTYTIKEWEGLQDTVFAS 102

>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein Length = 80

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 24 IDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM-KQIHALSIKKAMTPEQ 79
          +D  G  G  FE  +VS  F GK  LARHR+V A L E M   IHAL + K +TP++
Sbjct: 24 VDVQGEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQL-KTLTPDE 79

>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella Burnetii Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 29 GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQWKQ 82
          G G  FE  ++   FEG+  L RHRLV  AL    +  IHALS+ K  TP+++++
Sbjct: 28 GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSL-KTYTPDEYER 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	90
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	3e-38
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	4e-37
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	3e-36
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	2e-32
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	3e-32
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	2e-28
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	5e-26
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	2e-23
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	2e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score =  122 bits (307), Expect = 3e-38
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
             V+K  VE  L S L+P  L+V D SGGCGA F   IVS+QFEGK LL R RLVN+A+ 
Sbjct: 21  SMVSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIA 80

Query: 61  EEMKQIHALSIKKAMTPEQWKQQQE 85
            EM QIHA ++ K +TP +W+ +  
Sbjct: 81  AEMPQIHAFTM-KCLTPGEWEAKNR 104

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score =  119 bits (300), Expect = 4e-37
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 1/88 (1%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
               ++ +E  L+S L P+ LE++D S GCG  F+  IVS  FE K+LL RHRLVN  L+
Sbjct: 22  HMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILK 81

Query: 61  EEMKQIHALSIKKAMTPEQWKQQQESNA 88
           EE++ IHA S+ K  TP ++ + +   +
Sbjct: 82  EELQNIHAFSM-KCHTPLEYDKLKSKGS 108

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score =  117 bits (295), Expect = 3e-36
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
           M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L
Sbjct: 28  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87

Query: 60  EEEMKQIHALSIKKAMTPEQWKQQQE 85
            EE+  IHA    K +TPEQW +Q+ 
Sbjct: 88  AEELPHIHAFEQ-KTLTPEQWTRQRR 112

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score =  107 bits (270), Expect = 2e-32
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRL 54
            + +E++E  L +   P  LEV+D S       G  + F++ +VS++F G+R L RHR+
Sbjct: 7  GMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRM 66

Query: 55 VNAALEEEMKQ-IHALSIKKAMTPEQWKQQQES 86
          + + L EE+   +HAL++    T ++W+  Q++
Sbjct: 67 IYSTLAEELSTTVHALAL-HTYTIKEWEGLQDT 98

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score =  107 bits (270), Expect = 3e-32
 Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 8/95 (8%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRL 54
            G  +  + + L   L+P  LE+ + SG      G    F + +VS +FEG   L RHRL
Sbjct: 24  AGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRL 83

Query: 55  VNAALEEEMKQ-IHALSIKKAMTPEQWKQQQESNA 88
           V+ AL EE+   +HAL+I +A TP QW++  + + 
Sbjct: 84  VHEALSEELAGPVHALAI-QAKTPAQWRENPQLDI 117

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 96.6 bits (241), Expect = 2e-28
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
            VT   ++  + + L+ S +   +   G G  FE  ++   FEG+  L RHRLV  AL 
Sbjct: 3  AMVTTHDIKQWIETGLSESRVISAE---GDGHHFEAVVLCPTFEGQTALTRHRLVYNALG 59

Query: 61 EEMK-QIHALSIKKAMTPEQWKQ 82
            M+  IHALS+ K  TP+++++
Sbjct: 60 SHMQSDIHALSL-KTYTPDEYER 81

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 90.9 bits (226), Expect = 5e-26
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 4  TKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM 63
             +++S L + L+   + V     G G+ F++  V E F+G   + + + V   L E +
Sbjct: 7  ENNEIQSVLMNALSLQEVHV----SGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYI 62

Query: 64 K--QIHALSIKKAMTPEQWKQQQESNA 88
             +IHA+SI KA TP +W + ++ N 
Sbjct: 63 ADNRIHAVSI-KAYTPAEWARDRKLNG 88

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 83.9 bits (208), Expect = 2e-23
 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
            +  E +   + S L  + ++V       G  FE  +VS  F GK  LARHR+V A L 
Sbjct: 4  RPLDAETIRKLIESGLPEARVDVQG---EDGVHFEATVVSPAFVGKAPLARHRMVYATLG 60

Query: 61 EEMK-QIHALSIKKAMTPEQ 79
          E M   IHAL + K +TP++
Sbjct: 61 ELMGGAIHALQL-KTLTPDE 79

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 81.6 bits (202), Expect = 2e-22
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 1  MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
          M VT+ ++E  + +    + + V    G     + I+++S QF+GK  L +HR++   L+
Sbjct: 4  MTVTQSQLELLIRNAFPEAEITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYKVLD 62

Query: 61 EEMKQIHALSIK 72
               IHA+ I+
Sbjct: 63 GLN--IHAIQIQ 72

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 23/99 (23%), Gaps = 33/99 (33%)

Query: 17  NPSHLEVIDTSGGC---------------GAKFEIEIVSEQF-------EGKRLLARHRL 54
           N       +    C                A     I  +         E K LL ++  
Sbjct: 255 NAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 55  VNAA-LEEEMKQIH--ALSIKKAM------TPEQWKQQQ 84
                L  E+   +   LSI          T + WK   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 18/88 (20%)

Query: 3   VTKEKVESTLTS---KLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
           V++ +    L     +L P+   +ID   G               GK  +A    ++  +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGS--------------GKTWVALDVCLSYKV 176

Query: 60  EEEMK-QIHALSIKKAMTPEQWKQQQES 86
           + +M  +I  L++K   +PE   +  + 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	90
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	100.0
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	100.0
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	100.0
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	100.0
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	100.0
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	100.0
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	100.0
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	100.0
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.98
1ylq_A	96	Putative nucleotidyltransferase, hypothetical Pro	91.02

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=100.00  E-value=1.5e-37  Score=206.62  Aligned_cols=84  Identities=44%  Similarity=0.759  Sum_probs=80.6

Q ss_pred             ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHHHH
Q 034588            3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ   82 (90)
Q Consensus         3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew~~   82 (90)
                      |+.++|+++|+++|+|+.|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+.||||+ |+|+||+||++
T Consensus        24 m~~~~I~~~L~~~l~p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~IHALs-i~t~TP~Ew~~  102 (108)
T 2kdn_A           24 CIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQNIHAFS-MKCHTPLEYDK  102 (108)
T ss_dssp             SHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGGCSCEE-EEEECHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhcCceEE-EEecChHHHHH
Confidence            78999999999999999999999999899999999999999999999999999999999999999999 99999999998


Q ss_pred             chhhh
Q 034588           83 QQESN   87 (90)
Q Consensus        83 ~~~~~   87 (90)
                      ++++.
T Consensus       103 ~~~~~  107 (108)
T 2kdn_A          103 LKSKG  107 (108)
T ss_dssp             HHHTC
T ss_pred             hhccC
Confidence            77654

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=100.00  E-value=1.3e-36  Score=201.31  Aligned_cols=82  Identities=54%  Similarity=0.863  Sum_probs=78.7

Q ss_pred             ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHHHH
Q 034588            3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ   82 (90)
Q Consensus         3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew~~   82 (90)
                      ...++|+++|+++|+|..|+|+|+|+|||+||+|+|||+.|+|||+|+|||+||++|+++|++||||+ |+||||+||++
T Consensus        23 ~~~~~I~~kL~~~l~p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~IHALs-i~t~TP~Ew~~  101 (105)
T 3o2e_A           23 VSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIHAFT-MKCLTPGEWEA  101 (105)
T ss_dssp             CCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGGEEEEE-EEEECHHHHHH
T ss_pred             cHHHHHHHHHHhhCCCCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHhcCceeE-EEeCCHHHHHH
Confidence            36899999999999999999999998899999999999999999999999999999999999999999 99999999998


Q ss_pred             chh
Q 034588           83 QQE   85 (90)
Q Consensus        83 ~~~   85 (90)
                      ++.
T Consensus       102 ~~~  104 (105)
T 3o2e_A          102 KNR  104 (105)
T ss_dssp             TTC
T ss_pred             hhC
Confidence            654

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=100.00  E-value=8.8e-37  Score=204.28  Aligned_cols=84  Identities=44%  Similarity=0.788  Sum_probs=80.0

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCC-CCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHH
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQ   79 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S-~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~E   79 (90)
                      |.|+.++|+++|+++|+|+.|+|+|+| +|||+||+|+|||+.|+||++|+|||+||++|+++|+.||||+ |+|+||+|
T Consensus        28 M~m~~~~I~~~L~~~l~p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~IHALs-i~t~TP~E  106 (113)
T 1v9j_A           28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQ  106 (113)
T ss_dssp             SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGGCSSEE-EEEECHHH
T ss_pred             ccCcHHHHHHHHHhhCCCcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhcCceEE-EEecChHH
Confidence            568999999999999999999999999 5789999999999999999999999999999999999999999 99999999


Q ss_pred             HHHchh
Q 034588           80 WKQQQE   85 (90)
Q Consensus        80 w~~~~~   85 (90)
                      |+++++
T Consensus       107 w~~~~~  112 (113)
T 1v9j_A          107 WTRQRR  112 (113)
T ss_dssp             HHHSCC
T ss_pred             HHHhhc
Confidence            987653

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=100.00  E-value=2.7e-35  Score=195.36  Aligned_cols=83  Identities=35%  Similarity=0.707  Sum_probs=78.0

Q ss_pred             ccHHHHHHHHhhcCCCCeEEEEeCCC------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccC
Q 034588            3 VTKEKVESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAM   75 (90)
Q Consensus         3 ~~~~~I~~~l~~~l~~~~v~V~d~S~------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~   75 (90)
                      +..++|+++|++.|+|.+|+|+|+|+      |||+||+|+|||+.|+||++|+|||+||++|+++|+ +||||+ |+|+
T Consensus         9 ~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALs-i~t~   87 (107)
T 2dhm_A            9 MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALA-LHTY   87 (107)
T ss_dssp             CHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCE-EEEE
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEE-EEec
Confidence            56799999999999999999999994      789999999999999999999999999999999999 599999 9999


Q ss_pred             CHHHHHHchhh
Q 034588           76 TPEQWKQQQES   86 (90)
Q Consensus        76 tp~Ew~~~~~~   86 (90)
                      ||+||++++++
T Consensus        88 TP~Ew~~~~~~   98 (107)
T 2dhm_A           88 TIKEWEGLQDT   98 (107)
T ss_dssp             CHHHHHTSSCC
T ss_pred             CHHHHHhccCC
Confidence            99999986554

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=100.00  E-value=9.3e-35  Score=196.86  Aligned_cols=83  Identities=40%  Similarity=0.716  Sum_probs=78.4

Q ss_pred             cccHHHHHHHHhhcCCCCeEEEEeCCC------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCcc
Q 034588            2 GVTKEKVESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKA   74 (90)
Q Consensus         2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t   74 (90)
                      ++..++|+++|+++|+|.+|+|+|+|+      |||+||+|+|||+.|+||++|+|||+||++|+++|+ +||||+ |+|
T Consensus        25 ~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~IHALs-i~t  103 (123)
T 1v60_A           25 GPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALA-IQA  103 (123)
T ss_dssp             CHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSEEE-EEE
T ss_pred             CcHHHHHHHHHHhhCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCCcceeE-eEe
Confidence            456899999999999999999999996      789999999999999999999999999999999999 699999 999


Q ss_pred             CCHHHHHHchh
Q 034588           75 MTPEQWKQQQE   85 (90)
Q Consensus        75 ~tp~Ew~~~~~   85 (90)
                      +||+||+++++
T Consensus       104 ~TP~Ew~~~~~  114 (123)
T 1v60_A          104 KTPAQWRENPQ  114 (123)
T ss_dssp             ECTTTTTTCCC
T ss_pred             cCHHHHHhccC
Confidence            99999997655

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=100.00  E-value=1.1e-33  Score=179.94  Aligned_cols=76  Identities=37%  Similarity=0.589  Sum_probs=72.9

Q ss_pred             ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHHHH
Q 034588            3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQWK   81 (90)
Q Consensus         3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~Ew~   81 (90)
                      |+.++|+++|+++|+|++|+|.   +|||+||+|+|||+.|+|||+|+|||+||++|+++|+ .||||+ |+|+||+||+
T Consensus         5 m~~~~I~~~L~~~l~~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL~-i~t~Tp~Ew~   80 (82)
T 3tr3_A            5 VTTHDIKQWIETGLSESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHALS-LKTYTPDEYE   80 (82)
T ss_dssp             CCHHHHHHHHHHHSTTCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEEE-EEEECHHHHH
T ss_pred             chHHHHHHHHHhhCCCcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEE-EEeCCHHHHh
Confidence            7899999999999999999998   4689999999999999999999999999999999998 799999 9999999997


Q ss_pred             H
Q 034588           82 Q   82 (90)
Q Consensus        82 ~   82 (90)
                      +
T Consensus        81 ~   81 (82)
T 3tr3_A           81 R   81 (82)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=100.00  E-value=1.2e-33  Score=184.68  Aligned_cols=81  Identities=30%  Similarity=0.519  Sum_probs=75.8

Q ss_pred             cccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc--cccccccCccCCHHH
Q 034588            2 GVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK--QIHALSIKKAMTPEQ   79 (90)
Q Consensus         2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~--~IHAls~i~t~tp~E   79 (90)
                      .|+.++|+++|+++|+|+.|+|.    |||+||+|+|||+.|+|||+|+|||+||++|+++|+  +||||+ |+|+||+|
T Consensus         5 ~m~~~~I~~~L~~~l~p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALs-i~t~TP~E   79 (97)
T 1ny8_A            5 PMENNEIQSVLMNALSLQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS-IKAYTPAE   79 (97)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE-EEECCHHH
T ss_pred             ccCHHHHHHHHHhhCCCcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEE-eEecChHH
Confidence            46789999999999999999999    799999999999999999999999999999999998  399999 99999999


Q ss_pred             HHHchhhh
Q 034588           80 WKQQQESN   87 (90)
Q Consensus        80 w~~~~~~~   87 (90)
                      |++++.++
T Consensus        80 w~~~~~~~   87 (97)
T 1ny8_A           80 WARDRKLN   87 (97)
T ss_dssp             HHHHHHTT
T ss_pred             HHhhhhhc
Confidence            99876553

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=100.00  E-value=1e-33  Score=179.30  Aligned_cols=76  Identities=39%  Similarity=0.555  Sum_probs=72.2

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHH
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQ   79 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~E   79 (90)
                      |.|+.++|+++|+++|+|++++|+   |+||+||+|+|||+.|+|+|+|+|||+||++|+++|+ +||||+ |+|+||+|
T Consensus         4 ~mm~~~~I~~~L~~~l~~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHALs-i~t~Tp~E   79 (80)
T 1xs3_A            4 RPLDAETIRKLIESGLPEARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQ-LKTLTPDE   79 (80)
T ss_dssp             SCCHHHHHHHHHHHHSSSCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCE-EEEECGGG
T ss_pred             ccCCHHHHHHHHHhhCCCcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceEE-EEecCCCC
Confidence            378999999999999999999999   3489999999999999999999999999999999998 699999 99999999


Q ss_pred             H
Q 034588           80 W   80 (90)
Q Consensus        80 w   80 (90)
                      |
T Consensus        80 ~   80 (80)
T 1xs3_A           80 A   80 (80)
T ss_dssp             C
T ss_pred             C
Confidence            7

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.98  E-value=1.4e-33  Score=177.27  Aligned_cols=73  Identities=26%  Similarity=0.459  Sum_probs=71.0

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCH
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTP   77 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp   77 (90)
                      |.|+.++|+++|+++|+|++++|+|+| |||+||+|+|||+.|+|||+|+|||+||++|+++  +||||+ |+|+||
T Consensus         4 M~m~~~~I~~~L~~~l~~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e--~iHALs-i~t~tp   76 (76)
T 2kz0_A            4 MTVTQSQLELLIRNAFPEAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL--NIHAIQ-IQTGCK   76 (76)
T ss_dssp             SSCTTHHHHHHHHHHCTTEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS--CCCSSS-EEECCC
T ss_pred             CcccHHHHHHHHHhhCCCcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC--CceEEE-EEEeCC
Confidence            778999999999999999999999999 7899999999999999999999999999999999  999999 999997

>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5

Probab=91.02  E-value=1.7  Score=26.47  Aligned_cols=71  Identities=10%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             HHHHHHHHhhcCCCCeEEEEeCC----CCCc-ceEEEEEEccccCCCCHHHHHHHHHHHHHHh-cccccccccCccCCHH
Q 034588            5 KEKVESTLTSKLNPSHLEVIDTS----GGCG-AKFEIEIVSEQFEGKRLLARHRLVNAALEEE-MKQIHALSIKKAMTPE   78 (90)
Q Consensus         5 ~~~I~~~l~~~l~~~~v~V~d~S----~~~g-shf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~-~~~IHAls~i~t~tp~   78 (90)
                      .++|.+.+++.+++..+.+.---    ...+ |.+.+.|+++.  +.+...+-++.. .|.+. +.  +-+. +..+|++
T Consensus         4 l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~--~~~~~~~~~l~~-~l~~~~~~--~~vd-~~v~~~~   77 (96)
T 1ylq_A            4 MKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV--FEDRNRKLEFFG-KITKKFFD--SPFE-FHILTKK   77 (96)
T ss_dssp             HHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG--GGSHHHHHHHHH-HHHHHTTT--CSEE-EEEECHH
T ss_pred             HHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC--CCCHHHHHHHHH-HHHHhhcC--CCeE-EEEECHH
Confidence            46789999998988888876100    0246 89999999986  566666665544 44444 33  3445 5568999


Q ss_pred             HHH
Q 034588           79 QWK   81 (90)
Q Consensus        79 Ew~   81 (90)
                      ||+
T Consensus        78 ~~~   80 (96)
T 1ylq_A           78 EWK   80 (96)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	90
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	1e-28
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	1e-24

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.3 bits (242), Expect = 1e-28
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 1   MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
           M ++ + +   L   L   H+EV DT+   C   F + +VS +FEGK LL RHRLVN  L
Sbjct: 28  MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87

Query: 60  EEEMKQIHALSIKKAMTPEQWKQQQE 85
            EE+  IHA    K +TPEQW +Q+ 
Sbjct: 88  AEELPHIHAFEQ-KTLTPEQWTRQRR 112

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 86.4 bits (214), Expect = 1e-24
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 4  TKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM 63
             +++S L + L+   + V     G G+ F++  V E F+G   + + + V   L E +
Sbjct: 7  ENNEIQSVLMNALSLQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYI 62

Query: 64 K--QIHALSIKKAMTPEQWKQQQESNAAA 90
             +IHA+SI KA TP +W + ++ N   
Sbjct: 63 ADNRIHAVSI-KAYTPAEWARDRKLNGFL 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	90
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	100.0
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.97
d1ylqa1	90	Putative nucleotidyltransferase AF0614 {Archaeon A	97.47

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-35  Score=195.16  Aligned_cols=84  Identities=44%  Similarity=0.769  Sum_probs=80.6

Q ss_pred             CcccHHHHHHHHhhcCCCCeEEEEeCCC-CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHH
Q 034588            1 MGVTKEKVESTLTSKLNPSHLEVIDTSG-GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQ   79 (90)
Q Consensus         1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~-~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~E   79 (90)
                      |++++++|+++|+++|+|.+|+|+|+|. +||+||+|+|||+.|.|||+|+|||+||++|+++|+.||||+ |+|+||+|
T Consensus        28 m~~~~e~I~~kL~~~~~~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~~iHAls-i~t~Tp~E  106 (113)
T d1v9ja_          28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQ  106 (113)
T ss_dssp             SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGGCSSEE-EEEECHHH
T ss_pred             CcccHHHHHHHHHhhCCCcEEEEEecCCCCCCceEEEEEEeccccCCchhHHHHhHHHHHHHHHhcceeeE-EEeCCHHH
Confidence            7888999999999999999999999994 689999999999999999999999999999999999999999 99999999


Q ss_pred             HHHchh
Q 034588           80 WKQQQE   85 (90)
Q Consensus        80 w~~~~~   85 (90)
                      |+++++
T Consensus       107 w~~~~~  112 (113)
T d1v9ja_         107 WTRQRR  112 (113)
T ss_dssp             HHHSCC
T ss_pred             HHHhhc
Confidence            998764

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9.6e-33  Score=178.86  Aligned_cols=82  Identities=29%  Similarity=0.515  Sum_probs=76.6

Q ss_pred             cccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc--cccccccCccCCHHH
Q 034588            2 GVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK--QIHALSIKKAMTPEQ   79 (90)
Q Consensus         2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~--~IHAls~i~t~tp~E   79 (90)
                      +|..++|+++|.++||++.|+|.    |+|+||+|.|||+.|+|||+|+|||+||++|+++|+  .||||+ |+|+||+|
T Consensus         5 ~M~~~eI~~~L~~~l~~~~v~V~----g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAls-ikt~Tp~E   79 (97)
T d1ny8a_           5 PMENNEIQSVLMNALSLQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS-IKAYTPAE   79 (97)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE-EEECCHHH
T ss_pred             cCCHHHHHHHHHhhCCCcEEEEe----CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeE-eEeCCHHH
Confidence            68889999999999999999997    789999999999999999999999999999999997  599999 99999999


Q ss_pred             HHHchhhhh
Q 034588           80 WKQQQESNA   88 (90)
Q Consensus        80 w~~~~~~~~   88 (90)
                      |++.++-+.
T Consensus        80 w~~~kk~~~   88 (97)
T d1ny8a_          80 WARDRKLNG   88 (97)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHhhhhhh
Confidence            998776443

>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Catalytic subunit of bi-partite nucleotidyltransferase
domain: Putative nucleotidyltransferase AF0614
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.47  E-value=0.00049  Score=41.90  Aligned_cols=73  Identities=12%  Similarity=0.281  Sum_probs=56.1

Q ss_pred             HHHHHHHhhcCCCCeEEEEeC--CC--C-CcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHH
Q 034588            6 EKVESTLTSKLNPSHLEVIDT--SG--G-CGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQW   80 (90)
Q Consensus         6 ~~I~~~l~~~l~~~~v~V~d~--S~--~-~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew   80 (90)
                      ++|++.+++.++++.|-+.--  .|  . ++|.+.+.||++.+.  +..+|.+.+..++.....  +-+. +..+||+||
T Consensus         2 ~~i~e~ik~~~~~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~--~pvd-~~v~tpeef   76 (90)
T d1ylqa1           2 KEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD--SPFE-FHILTKKEW   76 (90)
T ss_dssp             HHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT--CSEE-EEEECHHHH
T ss_pred             HHHHHHHHHHCCCcEEEEECccccCCCCCCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhccC--CCeE-EEEcCHHHH
Confidence            579999999999999988721  01  1 358999999999996  468999998888877543  2356 666899999


Q ss_pred             HHc
Q 034588           81 KQQ   83 (90)
Q Consensus        81 ~~~   83 (90)
                      +.-
T Consensus        77 e~~   79 (90)
T d1ylqa1          77 KMS   79 (90)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            853