Citrus Sinensis ID: 034617

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW
Secondary Structure (PSIPRED)
ccccEEEccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlrniilrcplNLTAAIYRRrhlqsssppsslfffssdstvtqltrlpsllegcdykhwlvvmeapkgypprdeiVNGYVKTLASALGW
Flexible Loop (DISEMBL)
mlrniilrcpLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPkgypprdeiVNGYVKTLASALGW
Low Complexity Region (SEG)
MLRNIILRCPLNLTAAIYRRRHLQsssppsslfffssdsTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW
Disordered region (IsUnstruct)
***NIILRCPLNLTAAIYRRRH*********LFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLA*****
Disordered Region (DISOPRED)
**R****RCPLNLT***********************************LLEGCDYKHWLVVMEAPK***PRDEIVNGYVKTLASALGW
Disordered Region (DISEMBL)
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW
Disordered Region (DISPRO)
MLRNIILRCPLNLTAAIY***************************RLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLRNIILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q9LKA5	395	Uncharacterized protein A	no	no	0.438	0.098	0.615	2e-09
Q38732	230	DAG protein, chloroplasti	N/A	no	0.438	0.169	0.525	3e-06

>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
           LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA  +G
Sbjct: 91  LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVG 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 50  LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALG 88
           +L GCDY HWL+VME PK   P R+++++ Y+ TLA+ LG
Sbjct: 80  MLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLG 119

Acts very early in chloroplast development, being required for expression of RNA polymerase beta subunit gene, and hence indirectly for subsequent expression of CAB and RBCS genes.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
225442106	212	PREDICTED: uncharacterized protein At3g1	0.685	0.287	0.619	2e-14
147826994	212	hypothetical protein VITISV_021886 [Viti	0.685	0.287	0.619	2e-14
238479050	192	putative plastid developmental protein D	0.932	0.432	0.518	2e-14
15218508	188	putative plastid developmental protein D	0.932	0.441	0.518	2e-14
297839113	188	predicted protein [Arabidopsis lyrata su	0.932	0.441	0.493	4e-12
116792226	274	unknown [Picea sitchensis]	0.438	0.142	0.641	5e-09
148909275	224	unknown [Picea sitchensis]	0.438	0.174	0.615	1e-08
224121546	114	predicted protein [Populus trichocarpa]	0.438	0.342	0.641	1e-08
255566565	389	DAG protein, chloroplast precursor, puta	0.438	0.100	0.641	2e-08
147789423	428	hypothetical protein VITISV_017553 [Viti	0.797	0.165	0.447	2e-08

>gi|225442106|ref|XP_002272872.1| PREDICTED: uncharacterized protein At3g15000, mitochondrial [Vitis vinifera] gi|297742992|emb|CBI35859.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 27  SPPSSLFFFSSDSTV--TQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLA 84
           S  S+  +FSSDS    ++LTRLP++L+GCDY+HWLVVMEAP+ YP RDEIV GY++TLA
Sbjct: 42  SSRSAFGYFSSDSETQSSELTRLPTILDGCDYEHWLVVMEAPQRYPLRDEIVRGYIRTLA 101

Query: 85  SAL 87
             L
Sbjct: 102 MVL 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147826994|emb|CAN77774.1| hypothetical protein VITISV_021886 [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 27  SPPSSLFFFSSDSTV--TQLTRLPSLLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLA 84
           S  S+  +FSSDS    ++LTRLP++L+GCDY+HWLVVMEAP+ YP RDEIV GY++TLA
Sbjct: 42  SSRSAFGYFSSDSETQSSELTRLPTILDGCDYEHWLVVMEAPQRYPLRDEIVRGYIRTLA 101

Query: 85  SAL 87
             L
Sbjct: 102 MVL 104

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479050|ref|NP_001154468.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|332197215|gb|AEE35336.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 57/83 (68%)

Query: 6  ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
          I+R PLNLTAA+  R    S    +S    S  ++ ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct: 4  IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query: 66 PKGYPPRDEIVNGYVKTLASALG 88
          P GYP R+ IV  +V+TLA ALG
Sbjct: 64 PNGYPTRNHIVQSFVETLAMALG 86

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218508|ref|NP_177397.1| putative plastid developmental protein DAG [Arabidopsis thaliana] gi|12323763|gb|AAG51843.1|AC010926_6 DAG-like protein; 97518-96580 [Arabidopsis thaliana] gi|124301130|gb|ABN04817.1| At1g72530 [Arabidopsis thaliana] gi|332197214|gb|AEE35335.1| putative plastid developmental protein DAG [Arabidopsis thaliana]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 57/83 (68%)

Query: 6  ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
          I+R PLNLTAA+  R    S    +S    S  ++ ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct: 4  IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query: 66 PKGYPPRDEIVNGYVKTLASALG 88
          P GYP R+ IV  +V+TLA ALG
Sbjct: 64 PNGYPTRNHIVQSFVETLAMALG 86

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839113|ref|XP_002887438.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333279|gb|EFH63697.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 54/83 (65%)

Query: 6  ILRCPLNLTAAIYRRRHLQSSSPPSSLFFFSSDSTVTQLTRLPSLLEGCDYKHWLVVMEA 65
          I+R PLNLTAA+  R    S    +S    S  +  ++L R+ SL+EGCDYKHWLV+M+ 
Sbjct: 4  IIRRPLNLTAAVRFRLAPLSPFSGNSGSVNSGTTRCSELIRVSSLVEGCDYKHWLVLMKP 63

Query: 66 PKGYPPRDEIVNGYVKTLASALG 88
          P  YP R+ IV  +V+TLA ALG
Sbjct: 64 PNRYPTRNHIVQRFVETLAMALG 86

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116792226|gb|ABK26281.1| unknown [Picea sitchensis]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
           LL+GCDY+HWL+VME P+G P RDEI++ Y+KTLA  +G
Sbjct: 98  LLDGCDYEHWLIVMEPPEGNPTRDEIIDSYIKTLAQIVG 136

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909275|gb|ABR17737.1| unknown [Picea sitchensis]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
           LL+GCDY+HWL+VME P+G P RDEI++ Y+KTL+  +G
Sbjct: 93  LLDGCDYEHWLIVMEPPQGSPTRDEIIDSYIKTLSQVVG 131

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121546|ref|XP_002330727.1| predicted protein [Populus trichocarpa] gi|222872503|gb|EEF09634.1| predicted protein [Populus trichocarpa]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
          LL+GCD++HWLVVME P+G P RDEI++ Y+KTLA  +G
Sbjct: 20 LLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLAQVVG 58

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566565|ref|XP_002524267.1| DAG protein, chloroplast precursor, putative [Ricinus communis] gi|223536458|gb|EEF38106.1| DAG protein, chloroplast precursor, putative [Ricinus communis]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 50  LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
           LL+GCD+ HWLVVME P+G P RDEI++ Y+KTLA  +G
Sbjct: 89  LLDGCDFNHWLVVMEKPEGDPTRDEIIDSYIKTLAQVVG 127

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147789423|emb|CAN66606.1| hypothetical protein VITISV_017553 [Vitis vinifera]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 14/85 (16%)

Query: 15  AAIYRRRHLQSSSPPSSLFFFSSDSTVTQLT--------RLPS---LLEGCDYKHWLVVM 63
           AA+   RHL  S+   S   FS+  T + L         R P    LL+GCD++HWLVVM
Sbjct: 47  AAVSVLRHLPQST---SARSFSTRQTSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVM 103

Query: 64  EAPKGYPPRDEIVNGYVKTLASALG 88
           E P+G P RDEI++ Y+KTLA  +G
Sbjct: 104 EKPEGDPTRDEIIDSYIKTLAMIVG 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2030200	192	AT1G72530 "AT1G72530" [Arabido	0.932	0.432	0.481	6e-16
TAIR|locus:2083348	244	MORF3 "multiple organellar RNA	0.449	0.163	0.6	5.8e-10
TAIR|locus:2086310	395	RIP1 "RNA-editing factor inter	0.438	0.098	0.615	1.1e-09
TAIR|locus:2200131	232	MORF9 "multiple organellar RNA	0.438	0.168	0.55	7.8e-08
UNIPROTKB|Q2R8U1	374	Os11g0216400 "Os11g0216400 pro	0.438	0.104	0.512	5.4e-07
TAIR|locus:2063389	232	MORF6 "multiple organellar RNA	0.494	0.189	0.444	3.1e-06
TAIR|locus:2206639	229	AT1G32580 "AT1G32580" [Arabido	0.494	0.192	0.422	5e-06
TAIR|locus:2051003	219	DAL1 "differentiation and gree	0.494	0.200	0.4	5.7e-06
TAIR|locus:2119782	419	MORF1 "multiple organellar RNA	0.516	0.109	0.416	0.00012

TAIR|locus:2030200 AT1G72530 "AT1G72530" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query:     6 ILRCPLNLTAAIYRRRHLQXXXXXXXXXXXXXXXTVTQLTRLPSLLEGCDYKHWLVVMEA 65
             I+R PLNLTAA+  R                   + ++L R+PSL+EGCDYKHWLV+M+ 
Sbjct:     4 IIRRPLNLTAAVRFRLSPLSPFSGNSGSINSETTSWSELIRVPSLVEGCDYKHWLVLMKP 63

Query:    66 PKGYPPRDEIVNGYVKTLASALG 88
             P GYP R+ IV  +V+TLA ALG
Sbjct:    64 PNGYPTRNHIVQSFVETLAMALG 86

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083348 MORF3 "multiple organellar RNA editing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALGW 89
             LL+GCDY+HWL+VME     P  +E++N YVKTL S LGW
Sbjct:    88 LLDGCDYEHWLIVMEFTDPKPTEEEMINSYVKTLTSVLGW 127

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

TAIR|locus:2086310 RIP1 "RNA-editing factor interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
             LL+GCD++HWLVV+E P+G P RDEI++ Y+KTLA  +G
Sbjct:    91 LLDGCDFEHWLVVVEPPQGEPTRDEIIDSYIKTLAQIVG 129

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2200131 MORF9 "multiple organellar RNA editing factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query:    50 LLEGCDYKHWLVVMEAPKG-YPPRDEIVNGYVKTLASALG 88
             +L GCDY HWL+VME PK   P RD++++ Y+ TLA+ LG
Sbjct:    81 MLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTLATVLG 120

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:1900865 "chloroplast RNA modification" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q2R8U1 Os11g0216400 "Os11g0216400 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 122 (48.0 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 20/39 (51%), Positives = 27/39 (69%)

Query:    50 LLEGCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88
             L EGCDY HWL+ ME P   P R+E++  Y++TLA  +G
Sbjct:    85 LFEGCDYNHWLITMEFPDPKPTREEMIETYLQTLAKVVG 123

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

TAIR|locus:2063389 MORF6 "multiple organellar RNA editing factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALG 88
             T +  L  GCDY+HWL+VME P G    + ++++ YV+TLA  +G
Sbjct:    85 TEMAPLFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVG 129

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2206639 AT1G32580 "AT1G32580" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.0e-06, P = 5.0e-06
 Identities = 19/45 (42%), Positives = 30/45 (66%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALG 88
             T +  L  GCDY+HWL+VM+ P G    + ++++ YV+TLA  +G
Sbjct:    82 TEMAPLFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIG 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2051003 DAL1 "differentiation and greening-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query:    45 TRLPSLLEGCDYKHWLVVMEAPKGY-PPRDEIVNGYVKTLASALG 88
             T +  L  GCDY+HWL+VM+ P G    + ++++ Y++TLA  +G
Sbjct:    73 TEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVG 117

GO:0003674 "molecular_function" evidence=ND

GO:0002103 "endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009657 "plastid organization" evidence=IMP

GO:0000478 "endonucleolytic cleavage involved in rRNA processing" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2119782 MORF1 "multiple organellar RNA editing factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 0.00012, P = 0.00012
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query:    43 QLTRLPSLLEGCDYKHWLVVMEAPKGYPPR--DEIVNGYVKTLASALG 88
             ++T    L EGCDY HWL+ M+  K   P+  +E+V  Y +T A  LG
Sbjct:    74 EITEDTVLFEGCDYNHWLITMDFSKEETPKSPEEMVAAYEETCAQGLG 121


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        74   0.00091  102 3  11 22  0.47    28
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  103 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.83u 0.14s 6.97t   Elapsed:  00:00:01
  Total cpu time:  6.83u 0.14s 6.97t   Elapsed:  00:00:01
  Start:  Thu May  9 21:24:23 2013   End:  Thu May  9 21:24:24 2013

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:1900864 "mitochondrial RNA modification" evidence=IMP

GO:1900865 "chloroplast RNA modification" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00