Citrus Sinensis ID: 034623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MAYKATTLCLIIALVFFFFfssqasairpepafpdvtplknlhgdveeATKKVDQtvedscdgvegddcLMRRTLAAHIDYIYTQKSKP
Flexible Loop (DISEMBL)
MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEatkkvdqtvedscdgvegddCLMRRTLAAHIdyiytqkskp
Low Complexity Region (SEG)
MAYKATTlcliialvfffffssqasaiRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP
Disordered region (IsUnstruct)
***KATTLCLIIALVFFFFFSSQASAI********************************SCDGVEGDDCLMRRTLAAHIDYIYT*****
Disordered Region (DISOPRED)
**YKATTLCLIIALVFFFFFSSQA***************************************VEGDDCLMRRTLAAHIDYIYT*****
Disordered Region (DISEMBL)
MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP
Disordered Region (DISPRO)
*AYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTP******DVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKS**
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPxxxxxxxxxxxxxxxxxxxxxSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	89	2.2.26 [Sep-21-2011]
Q9SZG4	87	Putative phytosulfokines	yes	no	0.887	0.908	0.345	3e-07
Q9FEB4	77	Phytosulfokines 5 OS=Arab	no	no	0.831	0.961	0.367	7e-07
O81003	87	Phytosulfokines 2 OS=Arab	no	no	0.820	0.839	0.389	1e-06
Q9M2Y0	79	Phytosulfokines 3 OS=Arab	no	no	0.606	0.683	0.410	2e-06
Q9FS10	75	Phytosulfokines OS=Aspara	N/A	no	0.359	0.426	0.593	4e-06
Q9FRF9	75	Phytosulfokines 3 OS=Oryz	no	no	0.786	0.933	0.337	0.0001
Q9LMY9	87	Phytosulfokines 1 OS=Arab	no	no	0.707	0.724	0.378	0.0004

>sp|Q9SZG4|PSK4_ARATH Putative phytosulfokines 4 OS=Arabidopsis thaliana GN=PSK4 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 8  LCLIIALVFFFFFSSQASAIRPEPAFP---DVTPLKNLHGDVEEATKKVDQTVEDSCDGV 64
          L  +I +      +    + RPEPA+      +P   L   +E    K+ +   +SCD  
Sbjct: 4  LSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL--SLEMIESKLHEVAGESCDKE 61

Query: 65 EGDDCLMRRTLAAHIDYIYTQKSK 88
          + +DCL+RRTL AH+DYIYT K+ 
Sbjct: 62 DDEDCLVRRTLTAHLDYIYTHKNN 85

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FEB4|PSK5_ARATH Phytosulfokines 5 OS=Arabidopsis thaliana GN=PSK5 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 13/87 (14%)

Query: 4  KATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDG 63
          K TT   IIAL+     +  ++ + P   +P+           E + KK++Q  E  C+G
Sbjct: 3  KFTTFLCIIALLLCSTLTHASARLNPTSVYPE-----------ENSFKKLEQG-EVICEG 50

Query: 64 VEGDDC-LMRRTLAAHIDYIYTQKSKP 89
          V  ++C L+RRTL AH DYIYTQ   P
Sbjct: 51 VGEEECFLIRRTLVAHTDYIYTQNHNP 77

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Arabidopsis thaliana (taxid: 3702)

>sp|O81003|PSK2_ARATH Phytosulfokines 2 OS=Arabidopsis thaliana GN=PSK2 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)

Query: 15 VFFFFFSSQASAIRPEPAFP-DVTPLKNLHGDVEEATKKVD--QTVEDSCDGVEGDDCLM 71
          +     S+     RPEPA    +T   +     ++   K+D    V+++C G + +DCLM
Sbjct: 10 IALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENC-GADDEDCLM 68

Query: 72 RRTLAAHIDYIYTQKSK 88
          RRTL AH DYIYTQK K
Sbjct: 69 RRTLVAHTDYIYTQKKK 85

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Y0|PSK3_ARATH Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 36 VTPLKNLHGDVEEATKKV--DQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          +TP        E + K++  D+  E+SC+G+  ++CL+RR+L  H DYIYTQ  KP
Sbjct: 24 LTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLVLHTDYIYTQNHKP 79

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FS10|PSK_ASPOF Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 26/32 (81%)

Query: 58 EDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          +++C+GV  ++CLMRRTL AH+DYIYTQ   P
Sbjct: 44 DEACEGVGEEECLMRRTLTAHVDYIYTQDHNP 75

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Asparagus officinalis (taxid: 4686)

>sp|Q9FRF9|PSK3_ORYSJ Phytosulfokines 3 OS=Oryza sativa subsp. japonica GN=PSK3 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 16/86 (18%)

Query: 1  MAYKATTLCLIIALV-FFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVED 59
          M+ K   +CL+  L+        +   I P  A   V    N  G VE            
Sbjct: 1  MSPKVIAICLVALLLPISISHGGRIGPIEPSKASSKVVERGNYDGRVE------------ 48

Query: 60 SCDGVEGDDCLMRRTLAAHIDYIYTQ 85
             G E DDCL+ R L AH+DYIYTQ
Sbjct: 49 ---GCEEDDCLVERLLVAHLDYIYTQ 71

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LMY9|PSK1_ARATH Phytosulfokines 1 OS=Arabidopsis thaliana GN=PSK1 PE=2 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 19/82 (23%)

Query: 14 LVFFF----FFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVE---- 65
          L+FFF      S  +S I  E  F    P    H   E+A+ K D+      DGVE    
Sbjct: 9  LIFFFTLVLLLSMASSVILREDGFAPPKPSPTTH---EKASTKGDR------DGVECKNS 59

Query: 66 --GDDCLMRRTLAAHIDYIYTQ 85
             ++CL+++T+AAH DYIYTQ
Sbjct: 60 DSEEECLVKKTVAAHTDYIYTQ 81

Promotes plant cell differentiation, organogenesis and somatic embryogenesis as well as cell proliferation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
225429199	83	PREDICTED: phytosulfokines 3 [Vitis vini	0.932	1.0	0.595	3e-18
224105755	73	predicted protein [Populus trichocarpa]	0.820	1.0	0.576	6e-15
356575749	85	PREDICTED: phytosulfokines 3-like [Glyci	0.932	0.976	0.471	3e-13
224095017	84	predicted protein [Populus trichocarpa]	0.898	0.952	0.5	4e-13
356536085	85	PREDICTED: phytosulfokines 3-like [Glyci	0.932	0.976	0.471	5e-13
225467412	82	PREDICTED: phytosulfokines 3-like [Vitis	0.921	1.0	0.516	5e-13
224129772	85	predicted protein [Populus trichocarpa]	0.831	0.870	0.5	7e-12
255568659	87	phytosulfokines precursor, putative [Ric	0.842	0.862	0.513	8e-12
23466375	84	TPA_exp: putative phytosulfokine peptide	0.696	0.738	0.546	1e-10
23466379	64	TPA_exp: putative phytosulfokine peptide	0.674	0.937	0.546	2e-10

>gi|225429199|ref|XP_002276272.1| PREDICTED: phytosulfokines 3 [Vitis vinifera] gi|147769903|emb|CAN65538.1| hypothetical protein VITISV_018587 [Vitis vinifera] gi|297736408|emb|CBI25131.3| unnamed protein product [Vitis vinifera]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 65/89 (73%), Gaps = 6/89 (6%)

Query: 1  MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDS 60
          M+ K TTL  IIA + FF  S +A+  RP P+F DVTP+K  HGDV+EA K V+  VE+S
Sbjct: 1  MSSKLTTL-FIIASLLFFTLSCKAA--RPGPSFSDVTPMKIQHGDVDEA-KTVE--VEES 54

Query: 61 CDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          C+GV  ++CLMRRTLAAH DYIYTQK  P
Sbjct: 55 CEGVGEEECLMRRTLAAHTDYIYTQKKNP 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105755|ref|XP_002313922.1| predicted protein [Populus trichocarpa] gi|222850330|gb|EEE87877.1| predicted protein [Populus trichocarpa]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 5/78 (6%)

Query: 12 IALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLM 71
          +A++ F F  +  SA RPEPAF DVTP++ L+GD  EA + V+  +E SC+GV  D+CL 
Sbjct: 1  MAILLFSF--TLTSAARPEPAFADVTPMETLYGDNAEA-ETVE--MEKSCEGVGEDECLT 55

Query: 72 RRTLAAHIDYIYTQKSKP 89
          RRTLAA IDYIYTQK KP
Sbjct: 56 RRTLAAQIDYIYTQKHKP 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575749|ref|XP_003555999.1| PREDICTED: phytosulfokines 3-like [Glycine max]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 6/89 (6%)

Query: 1  MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDS 60
          M+ K T+  L +A++F F   + A   R  PA   +T +K  HG +EE  +K+D  VE++
Sbjct: 3  MSSKVTSATLCLAVLFLFLTFTYAG--RLGPASSSITSIKTQHGVLEE--EKLD--VEET 56

Query: 61 CDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          CDG+  ++CLMRRTL AH DYIYTQK KP
Sbjct: 57 CDGIGEEECLMRRTLVAHTDYIYTQKHKP 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095017|ref|XP_002310329.1| predicted protein [Populus trichocarpa] gi|222853232|gb|EEE90779.1| predicted protein [Populus trichocarpa]

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/86 (50%), Positives = 55/86 (63%), Gaps = 6/86 (6%)

Query: 4  KATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDG 63
          K TTL LI++L      S+   A RPEP FP+ +  KN    V+    +V   +E+SC+G
Sbjct: 5  KVTTLFLIVSL---LLCSTLTYAARPEPGFPNGSLAKNQQKVVDAEHAEV---MEESCEG 58

Query: 64 VEGDDCLMRRTLAAHIDYIYTQKSKP 89
          V  ++CLMRRTLAAH DYIYTQK KP
Sbjct: 59 VGEEECLMRRTLAAHTDYIYTQKHKP 84

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536085|ref|XP_003536571.1| PREDICTED: phytosulfokines 3-like [Glycine max]

 Score = 78.6 bits (192), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 6/89 (6%)

Query: 1  MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDS 60
          M+ K T   L +A++F F   + A   R  PA   +T +K  HG +EE  +K+D  VE++
Sbjct: 3  MSSKVTGATLCLAVLFLFLTFTYAG--RLGPASSSITSIKTQHGVLEE--EKLD--VEET 56

Query: 61 CDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          CDG+  ++CLMRRTL AH DYIYTQK KP
Sbjct: 57 CDGIGEEECLMRRTLVAHTDYIYTQKHKP 85

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467412|ref|XP_002271337.1| PREDICTED: phytosulfokines 3-like [Vitis vinifera] gi|296088931|emb|CBI38497.3| unnamed protein product [Vitis vinifera]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 1  MAYKATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDS 60
          M+ K  T   I+AL   F  S+   A RP+PA P   P K  HG VE    +V   V+ +
Sbjct: 1  MSPKVATF-FILAL---FLCSTLTYAARPQPASPHDFPGKTQHGGVEAERAEV---VDGN 53

Query: 61 CDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
          C+GV  D+CLMRRTLAAHIDYIYTQK KP
Sbjct: 54 CEGVGEDECLMRRTLAAHIDYIYTQKEKP 82

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129772|ref|XP_002320667.1| predicted protein [Populus trichocarpa] gi|222861440|gb|EEE98982.1| predicted protein [Populus trichocarpa]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 2/76 (2%)

Query: 14 LVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRR 73
          LV     S+   A RPEP FP  +  KN H  VE    +V +  E SC+G+  ++CLMRR
Sbjct: 12 LVALLLCSTITYAARPEPGFPGGSLAKNQHKVVEAEHAEVME--EISCEGLGEEECLMRR 69

Query: 74 TLAAHIDYIYTQKSKP 89
          TLAAH DYIYTQK+ P
Sbjct: 70 TLAAHTDYIYTQKNNP 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568659|ref|XP_002525303.1| phytosulfokines precursor, putative [Ricinus communis] gi|223535461|gb|EEF37131.1| phytosulfokines precursor, putative [Ricinus communis]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 14 LVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRR 73
          LV     S+   A RPEPAF + +  KN   D     ++  + VE+SC+GV  ++CLMRR
Sbjct: 13 LVALLLCSTLIHASRPEPAFSNGSLPKN-QQDQGVNQEEHAEMVEESCEGVGEEECLMRR 71

Query: 74 TLAAHIDYIYTQKSKP 89
          TLAAHIDYIYTQK KP
Sbjct: 72 TLAAHIDYIYTQKHKP 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23466375|tpg|DAA00278.1| TPA_exp: putative phytosulfokine peptide precursor [Gossypium arboreum]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 26 AIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQ 85
          A R  PAFP+ +P K         T +++Q+ ED C+GV  D+CLMRRTLAAH+DYIYTQ
Sbjct: 23 AARSGPAFPNDSPAKT-QSQGTTTTDEIEQS-EDRCEGVGEDECLMRRTLAAHLDYIYTQ 80

Query: 86 KSKP 89
          K KP
Sbjct: 81 KQKP 84

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|23466379|tpg|DAA00280.1| TPA_exp: putative phytosulfokine peptide precursor [Glycine max]

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 4/64 (6%)

Query: 26 AIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQ 85
          A R  PA   +T +K  HG +EE  +K+D  VE++CDG+  ++CLMRRTL AH DYIYTQ
Sbjct: 5  AGRLGPASSSITSIKTQHGVLEE--EKLD--VEETCDGIGEEECLMRRTLVAHTDYIYTQ 60

Query: 86 KSKP 89
          K KP
Sbjct: 61 KHKP 64

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2120091	87	PSK6 "phytosulfokine 6 precurs	0.651	0.666	0.460	1.2e-08
TAIR|locus:2059216	87	PSK2 "phytosulfokine 2 precurs	0.674	0.689	0.453	2.6e-08
TAIR|locus:2097345	79	PSK4 "phytosulfokine 4 precurs	0.606	0.683	0.410	1.4e-07
TAIR|locus:2152084	77	PSK5 "phytosulfokine 5 precurs	0.471	0.545	0.522	3.4e-06
TAIR|locus:4515102885	109	AT2G22942 [Arabidopsis thalian	0.337	0.275	0.515	0.00035
TAIR|locus:2009917	87	PSK1 "phytosulfokine 1 precurs	0.595	0.609	0.357	0.00045

TAIR|locus:2120091 PSK6 "phytosulfokine 6 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:    28 RPEPA-FPDVT--PLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYT 84
             RPEPA F   T  P   L   +E    K+ +   +SCD  + +DCL+RRTL AH+DYIYT
Sbjct:    24 RPEPAYFASFTTSPADTL--SLEMIESKLHEVAGESCDKEDDEDCLVRRTLTAHLDYIYT 81

Query:    85 QKS 87
              K+
Sbjct:    82 HKN 84

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0030154 "cell differentiation" evidence=ISS

GO:0031012 "extracellular matrix" evidence=ISS

TAIR|locus:2059216 PSK2 "phytosulfokine 2 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 29/64 (45%), Positives = 39/64 (60%)

Query:    28 RPEPAFP-DVTPLKNLHGDVEEATKKVDQT--VEDSCDGVEGDDCLMRRTLAAHIDYIYT 84
             RPEPA    +T   +     ++   K+D    V+++C G + +DCLMRRTL AH DYIYT
Sbjct:    23 RPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENC-GADDEDCLMRRTLVAHTDYIYT 81

Query:    85 QKSK 88
             QK K
Sbjct:    82 QKKK 85

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0030154 "cell differentiation" evidence=ISS

GO:0031012 "extracellular matrix" evidence=ISS

TAIR|locus:2097345 PSK4 "phytosulfokine 4 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query:    36 VTPLKNLHGDVEEATKKV--DQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
             +TP        E + K++  D+  E+SC+G+  ++CL+RR+L  H DYIYTQ  KP
Sbjct:    24 LTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLVLHTDYIYTQNHKP 79

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0030154 "cell differentiation" evidence=ISS

GO:0031012 "extracellular matrix" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2152084 PSK5 "phytosulfokine 5 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query:    47 EEATKKVDQTVEDSCDGVEGDDC-LMRRTLAAHIDYIYTQKSKP 89
             E + KK++Q  E  C+GV  ++C L+RRTL AH DYIYTQ   P
Sbjct:    35 ENSFKKLEQG-EVICEGVGEEECFLIRRTLVAHTDYIYTQNHNP 77

GO:0005576 "extracellular region" evidence=ISM

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0030154 "cell differentiation" evidence=ISS

GO:0031012 "extracellular matrix" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:4515102885 AT2G22942 [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query:    57 VEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
             +E +C   E D+CLM+ T  AH+DYIYTQ   P
Sbjct:    36 IEKNC---ETDECLMKTTSDAHLDYIYTQNPPP 65

GO:0005576 "extracellular region" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

TAIR|locus:2009917 PSK1 "phytosulfokine 1 precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query:    30 EPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQ 85
             E  F    P    H   E+A+ K D+   +  +    ++CL+++T+AAH DYIYTQ
Sbjct:    29 EDGFAPPKPSPTTH---EKASTKGDRDGVECKNSDSEEECLVKKTVAAHTDYIYTQ 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       89        69   0.00091  102 3  11 23  0.37    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  513 (55 KB)
  Total size of DFA:  94 KB (2068 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.75u 0.17s 8.92t   Elapsed:  00:00:00
  Total cpu time:  8.75u 0.17s 8.92t   Elapsed:  00:00:00
  Start:  Thu May  9 21:33:44 2013   End:  Thu May  9 21:33:44 2013

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016049 "cell growth" evidence=ISS

GO:0031012 "extracellular matrix" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SZG4	PSK4_ARATH	No assigned EC number	0.3452	0.8876	0.9080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	89
pfam06404	74	pfam06404, PSK, Phytosulfokine precursor protein (	2e-25

>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK)

 Score = 89.7 bits (223), Expect = 2e-25
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 5/78 (6%)

Query: 13 ALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQ-TVEDSCDGVEGDDCLM 71
          AL+     SS A+A RP P        K         + KVD+  V   C+G   ++CLM
Sbjct: 1  ALLLVCSSSSLAAAARPLPTDTGHESSKI----EAAESSKVDEDEVVSECEGEGEEECLM 56

Query: 72 RRTLAAHIDYIYTQKSKP 89
          RRTLAAH+DYIYTQ   P
Sbjct: 57 RRTLAAHLDYIYTQHHNP 74

This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	89
PF06404	81	PSK: Phytosulfokine precursor protein (PSK); Inter	100.0
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	95.59
PF02950	75	Conotoxin: Conotoxin; InterPro: IPR004214 Cone sna	83.57

>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins

Probab=100.00  E-value=1.3e-35  Score=196.55  Aligned_cols=74  Identities=43%  Similarity=0.691  Sum_probs=55.0

Q ss_pred             HHHhhhhhhhhcCCCCCCCCCCccc---ccchhhHHhhhhcccccccccCC-CCchhHHHHHHHhhhhhhhccCCCCC
Q 034623           16 FFFFFSSQASAIRPEPAFPDVTPLK---NLHGDVEEATKKVDQTVEDSCDG-VEGDDCLMRRTLAAHIDYIYTQKSKP   89 (89)
Q Consensus        16 LL~~t~~~t~AARp~P~~~~~~~~~---~~~~~ve~~~~~~~~~~~~~c~~-~~~eeCl~rr~l~ah~DYIYTq~~~p   89 (89)
                      |+|++++.++||||.|+++...+.+   ..+..++++....+.+++|+|+| +++|||||||||+|||||||||||||
T Consensus         4 L~~~~~~~~~AARp~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~E~Ceg~~~eEECL~RRtL~AHlDYIYTQ~~~~   81 (81)
T PF06404_consen    4 LLCSSSTSAAAARPLPASQGAEPVKSEEVQSAGVDEDEVVSELMGEESCEGGEGEEECLMRRTLAAHLDYIYTQHHNP   81 (81)
T ss_pred             HHHHHhhHhhhcCCCCCccccccccccchhhcchhhhhhHHHhhhhccccCCCCchHHHHHHHHHHHhhheeccCCCc
Confidence            3344456899999999998876655   22333333221233467789997 78999999999999999999999998

Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=95.59  E-value=0.0085  Score=40.66  Aligned_cols=9  Identities=56%  Similarity=0.349  Sum_probs=6.4

Q ss_pred             ChhHHHHHH
Q 034623            1 MAYKATTLC    9 (89)
Q Consensus         1 MasK~talf    9 (89)
                      |+||...||
T Consensus         1 MaSK~~llL    9 (95)
T PF07172_consen    1 MASKAFLLL    9 (95)
T ss_pred             CchhHHHHH
Confidence            999975443

Some of them may be involved in resistance to environmental stress [].

>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors

Probab=83.57  E-value=0.4  Score=29.57  Aligned_cols=30  Identities=20%  Similarity=0.162  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCC
Q 034623            3 YKATTLCLIIALVFFFFFSSQASAIRPEPAFP   34 (89)
Q Consensus         3 sK~talflvAaL~LL~~t~~~t~AARp~P~~~   34 (89)
                      .|++.+++||+| ||. +.+.....|..|...
T Consensus         1 mKLt~vliVavL-llt-~~~~~~~~~~~~~~~   30 (75)
T PF02950_consen    1 MKLTCVLIVAVL-LLT-TLATADLDGDQPADR   30 (75)
T ss_dssp             --------------------------------
T ss_pred             CCcchHHHHHHH-HHH-HHHhcccccccchhh
Confidence            388888888844 443 212334455555543

Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00