Citrus Sinensis ID: 034644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccHHHHHHHcHcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKLHFTTVVVCSLILSfsllepatagspfcdskcaerckqagvqdrclkycgiccedckcvpsgtygnkhecpcyrdkvnkkgkpkcp
Flexible Loop (DISEMBL)
MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKcvpsgtygnkhecpcyrdkvnkkgkpkcp
Low Complexity Region (SEG)
MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP
Disordered region (IsUnstruct)
**LHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYR************
Disordered Region (DISOPRED)
**LHFTTVVVCSLILSFSLL*PATAG*PFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKK******
Disordered Region (DISEMBL)
MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDK**********
Disordered Region (DISPRO)
*KLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVN******C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q948Z4	88	Snakin-1 OS=Solanum tuber	N/A	no	0.840	0.840	0.743	5e-26
Q8LFM2	89	Gibberellin-regulated pro	yes	no	1.0	0.988	0.595	2e-21
P86888	63	Peamaclein OS=Prunus pers	N/A	no	0.715	1.0	0.777	3e-21
O82328	108	Gibberellin-regulated pro	no	no	0.681	0.555	0.75	3e-21
O80641	87	Gibberellin-regulated pro	no	no	0.965	0.977	0.533	3e-18
P27057	112	Protein GAST1 OS=Solanum	N/A	no	0.670	0.526	0.491	5e-10
Q6NMQ7	101	Gibberellin-regulated pro	no	no	0.761	0.663	0.432	9e-10
P47926	96	Protein RSI-1 OS=Solanum	N/A	no	0.943	0.864	0.329	1e-09
P46690	106	Gibberellin-regulated pro	no	no	0.761	0.632	0.417	4e-09
P46687	99	Gibberellin-regulated pro	no	no	0.670	0.595	0.440	4e-08

>sp|Q948Z4|SNAK1_SOLTU Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%)

Query: 15 LSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPC 74
          ++ SL++   AGS FCDSKC  RC +AG+ DRCLKYCGICCE+CKCVPSGTYGNKHECPC
Sbjct: 15 ITPSLIQTTMAGSSFCDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPC 74

Query: 75 YRDKVNKKGKPKCP 88
          YRDK N KGK KCP
Sbjct: 75 YRDKKNSKGKSKCP 88

Has an antimicrobial activity. Causes a rapid aggregation of both Gram-positive and Gram-negative bacteria, but the antimicrobial activity is not correlated with the capacity to aggregate bacteria.
Solanum tuberosum (taxid: 4113)

>sp|Q8LFM2|GASAA_ARATH Gibberellin-regulated protein 10 OS=Arabidopsis thaliana GN=GASA10 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCK- 59
          MK     V++ SL+++ SL   +TA S  C  KC  RC +AG QDRCLKYC ICCE C  
Sbjct: 1  MKFPAVKVLIISLLITSSLFILSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNY 60

Query: 60 CVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          CVPSGTYGNK ECPCYRD  N KG  KCP
Sbjct: 61 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P86888|PMLN_PRUPE Peamaclein OS=Prunus persica PE=1 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/63 (77%), Positives = 51/63 (80%)

Query: 26 GSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKP 85
          GS FCDSKC  RC +AG Q+RCLKYCGICCE C CVPSGTYGNK ECPCYRD  N KG P
Sbjct: 1  GSSFCDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNP 60

Query: 86 KCP 88
          KCP
Sbjct: 61 KCP 63

Prunus persica (taxid: 3760)

>sp|O82328|GASA7_ARATH Gibberellin-regulated protein 7 OS=Arabidopsis thaliana GN=GASA7 PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query: 29  FCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
           +C  KC  RCK+AG++DRCLKYCGICC+DC+CVPSGTYGNKHEC CYRDK++ KG PKCP
Sbjct: 49  WCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|O80641|GASA8_ARATH Gibberellin-regulated protein 8 OS=Arabidopsis thaliana GN=At2g39540 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 57/90 (63%), Gaps = 5/90 (5%)

Query: 1  MKLHFTTVVVCSLIL--SFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDC 58
          MKL      + SL+L  SFS+L  A +    C  KC  RC +AG  + CLKYC ICC+ C
Sbjct: 1  MKLVVVQFFIISLLLTSSFSVLSSADSS---CGGKCNVRCSKAGQHEECLKYCNICCQKC 57

Query: 59 KCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
           CVPSGT+G+K ECPCYRD  N KG  KCP
Sbjct: 58 NCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P27057|GAST1_SOLLC Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 36/59 (61%)

Query: 30  CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
           C  KC  RC +   +  C+ +C  CC  C CVP+GTYGNK  CPCY +   K+G PKCP
Sbjct: 54  CQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112

Solanum lycopersicum (taxid: 4081)

>sp|Q6NMQ7|GASA6_ARATH Gibberellin-regulated protein 6 OS=Arabidopsis thaliana GN=GASA6 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 36/67 (53%)

Query: 22  PATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNK 81
           P +  S  C  +C  RC        C+ +C  CC  C CVP GTYGNK  CPCY +   +
Sbjct: 35  PGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQ 94

Query: 82  KGKPKCP 88
           +G PKCP
Sbjct: 95  QGGPKCP 101

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|P47926|RSI1_SOLLC Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          + +    +   +++  ++ L P       C  +C  RC     +  C+ +C  CC  C C
Sbjct: 14 ISMFLILLTFSNVVEGYNKLRPTD-----CKPRCTYRCSATSHKKPCMFFCQKCCATCLC 68

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VP G YGNK  CPCY +   ++GKPKCP
Sbjct: 69 VPKGVYGNKQSCPCYNNWKTQEGKPKCP 96

Solanum lycopersicum (taxid: 4081)

>sp|P46690|GASA4_ARATH Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 36/67 (53%)

Query: 22  PATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNK 81
           P +     C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   +
Sbjct: 40  PGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQ 99

Query: 82  KGKPKCP 88
           +G PKCP
Sbjct: 100 EGGPKCP 106

Gibberellin-regulated protein involved in the regulation of floral meristem and floral organ identity, and promotion of seed size and weight. May play a role in the promotion of gibberellin responses such as regulation of flowering under short-day conditions, seed germination and inhibition of gibberellin oxidase. Possesses redox activity in E.coli and may function in redox regulation in planta.

Arabidopsis thaliana (taxid: 3702)

>sp|P46687|GASA3_ARATH Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 33/59 (55%)

Query: 30 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          C  +C  RC ++   + CL+ C  CC  C CVP GT GN H CPCY     + G+ KCP
Sbjct: 41 CGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
225458776	88	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.693	2e-28
255538122	88	GAST1 protein precursor, putative [Ricin	1.0	1.0	0.693	1e-27
351722324	115	uncharacterized protein LOC100500113 [Gl	1.0	0.765	0.659	1e-27
407260765	88	gibberellin-regulated protein [Populus t	1.0	1.0	0.693	2e-27
224137706	88	predicted protein [Populus trichocarpa]	1.0	1.0	0.681	4e-27
356564141	88	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.647	5e-27
255626041	88	unknown [Glycine max]	1.0	1.0	0.647	9e-27
407260767	88	gibberellin-regulated protein [Populus a	1.0	1.0	0.681	2e-26
445069056	88	GA-stimulated transcript-like protein 6	1.0	1.0	0.659	4e-25
356514449	88	PREDICTED: snakin-1 [Glycine max] gi|255	1.0	1.0	0.715	1e-24

>gi|225458776|ref|XP_002285141.1| PREDICTED: uncharacterized protein LOC100257455 [Vitis vinifera] gi|302142231|emb|CBI19434.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 72/88 (81%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK    T ++  L+LS S ++ A AGS FCDSKCA RC +AG++DRCLKYCGICCE+CKC
Sbjct: 1  MKPLLATFLLVFLVLSSSFVQNAMAGSSFCDSKCAARCSKAGMKDRCLKYCGICCEECKC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCY+DK N KG+PKCP
Sbjct: 61 VPSGTYGNKHECPCYKDKKNSKGQPKCP 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538122|ref|XP_002510126.1| GAST1 protein precursor, putative [Ricinus communis] gi|223550827|gb|EEF52313.1| GAST1 protein precursor, putative [Ricinus communis]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 69/88 (78%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK  F  + +   +L+ SL E   AGS FCDSKC +RC++AGV+DRCLKYCGICCE CKC
Sbjct: 1  MKPSFVALFLVCFVLTSSLFEVTVAGSGFCDSKCEKRCEKAGVKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCYRD  N KGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722324|ref|NP_001236984.1| uncharacterized protein LOC100500113 [Glycine max] gi|255629301|gb|ACU14995.1| unknown [Glycine max]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 70/88 (79%)

Query: 1   MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
           MK+ F  V++  L+LS SL E + AGS FC SKCA+RC +AG++DRC ++CGICC  C+C
Sbjct: 28  MKVAFVAVLLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRC 87

Query: 61  VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
           VPSGTYGNKHECPCYRD  N KGKPKCP
Sbjct: 88  VPSGTYGNKHECPCYRDMKNSKGKPKCP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260765|gb|AFT92001.1| gibberellin-regulated protein [Populus tomentosa] gi|407260789|gb|AFT92013.1| gibberellin-regulated protein [Populus tomentosa]

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 67/88 (76%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK  F  V +  L+ S SL E   A S FCDSKC+ RC +AG++DRCLKYCGICCE CKC
Sbjct: 1  MKPVFAAVFLLCLVFSSSLFEVTMAASGFCDSKCSARCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCYRD  N KGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137706|ref|XP_002327192.1| predicted protein [Populus trichocarpa] gi|222835507|gb|EEE73942.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 67/88 (76%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK  F  + +  L+ S SL E   A S FCDSKC+ RC +AG++DRCLKYCGICCE CKC
Sbjct: 1  MKPVFAAIFLLCLVFSSSLFEVTMAASGFCDSKCSVRCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCYRD  N KGKPKCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKPKCP 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564141|ref|XP_003550315.1| PREDICTED: uncharacterized protein LOC100305602 [Glycine max]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 69/88 (78%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK+ F  V++  L+LS SL E + AGS FC SKC++RC +AG++DRC+K+CGICC  C C
Sbjct: 1  MKVAFAAVLLICLVLSSSLFEVSMAGSAFCSSKCSKRCSRAGMKDRCMKFCGICCSKCNC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCYRD  N KGK KCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKAKCP 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626041|gb|ACU13365.1| unknown [Glycine max]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 69/88 (78%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK+ F  V++  L+LS SL E + AGS FC SKC++RC +AG++DRC+K+CGICC  C C
Sbjct: 1  MKVAFAAVLLICLVLSSSLFEVSMAGSAFCSSKCSKRCSRAGMKDRCMKFCGICCGKCNC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNKHECPCYRD  N KGK KCP
Sbjct: 61 VPSGTYGNKHECPCYRDMKNSKGKAKCP 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407260767|gb|AFT92002.1| gibberellin-regulated protein [Populus alba x Populus tremula var. glandulosa] gi|407260791|gb|AFT92014.1| gibberellin-regulated protein [Populus alba x Populus tremula var. glandulosa]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 66/88 (75%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK  F  V +  L+ S SL E   A S FCDSKC+ RC +AG++DRCLKYCGICCE CKC
Sbjct: 1  MKPVFAAVFLLCLVFSSSLFEVTMAASGFCDSKCSARCSKAGIKDRCLKYCGICCEKCKC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNK ECPCYRD  N KGKPKCP
Sbjct: 61 VPSGTYGNKLECPCYRDMKNSKGKPKCP 88

Source: Populus alba x Populus tremula var. glandulosa

Species: Populus alba x Populus glandulosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|445069056|gb|AGE15502.1| GA-stimulated transcript-like protein 6 [Gossypium hirsutum]

 Score =  118 bits (296), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 65/88 (73%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MK+     ++ SL LS    E + AGS FCDSKCA RC +AGVQDRCLKYCGICCE C C
Sbjct: 1  MKMVLMLFLLVSLALSSCFFEVSIAGSDFCDSKCAVRCSKAGVQDRCLKYCGICCEKCHC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGT+G+K ECPCYRD  N KGK KCP
Sbjct: 61 VPSGTFGHKDECPCYRDMKNSKGKSKCP 88

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514449|ref|XP_003525918.1| PREDICTED: snakin-1 [Glycine max] gi|255627577|gb|ACU14133.1| unknown [Glycine max]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 71/88 (80%)

Query: 1  MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKC 60
          MKL F  V++  L+LS S LE + AGSPFCDSKCA+RC +AGVQDRCL++CGICCE C C
Sbjct: 1  MKLEFANVLLLCLVLSSSFLEISMAGSPFCDSKCAQRCAKAGVQDRCLRFCGICCEKCNC 60

Query: 61 VPSGTYGNKHECPCYRDKVNKKGKPKCP 88
          VPSGTYGNK ECPCYRD  N KGK KCP
Sbjct: 61 VPSGTYGNKDECPCYRDMKNSKGKDKCP 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2060485	108	AT2G14900 "AT2G14900" [Arabido	0.681	0.555	0.75	4e-26
TAIR|locus:505006706	89	AT5G59845 "AT5G59845" [Arabido	1.0	0.988	0.595	2.2e-25
TAIR|locus:2039732	87	AT2G39540 [Arabidopsis thalian	0.965	0.977	0.533	2.6e-22
TAIR|locus:4010713424	90	AT1G10588 [Arabidopsis thalian	0.897	0.877	0.525	2.7e-20
TAIR|locus:505006327	97	GASA5 "GAST1 protein homolog 5	0.943	0.855	0.417	1.3e-15
TAIR|locus:4010713737	103	AT3G10185 [Arabidopsis thalian	0.920	0.786	0.406	2.6e-15
TAIR|locus:2052876	106	AT2G30810 [Arabidopsis thalian	0.670	0.556	0.508	4.2e-15
TAIR|locus:2019195	101	GASA6 "AT1G74670" [Arabidopsis	0.761	0.663	0.432	4.9e-14
TAIR|locus:2150896	106	GASA4 "AT5G15230" [Arabidopsis	0.670	0.556	0.457	1.3e-13
TAIR|locus:2199645	119	AT1G22690 "AT1G22690" [Arabido	0.670	0.495	0.440	3.3e-13

TAIR|locus:2060485 AT2G14900 "AT2G14900" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query:    29 FCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             +C  KC  RCK+AG++DRCLKYCGICC+DC+CVPSGTYGNKHEC CYRDK++ KG PKCP
Sbjct:    49 WCGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:505006706 AT5G59845 "AT5G59845" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 53/89 (59%), Positives = 60/89 (67%)

Query:     1 MKLHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCK- 59
             MK     V++ SL+++ SL   +TA S  C  KC  RC +AG QDRCLKYC ICCE C  
Sbjct:     1 MKFPAVKVLIISLLITSSLFILSTADSSPCGGKCNVRCSKAGRQDRCLKYCNICCEKCNY 60

Query:    60 CVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             CVPSGTYGNK ECPCYRD  N KG  KCP
Sbjct:    61 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2039732 AT2G39540 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 48/90 (53%), Positives = 57/90 (63%)

Query:     1 MKLHFTTVVVCSLIL--SFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDC 58
             MKL      + SL+L  SFS+L  A +    C  KC  RC +AG  + CLKYC ICC+ C
Sbjct:     1 MKLVVVQFFIISLLLTSSFSVLSSADSS---CGGKCNVRCSKAGQHEECLKYCNICCQKC 57

Query:    59 KCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
              CVPSGT+G+K ECPCYRD  N KG  KCP
Sbjct:    58 NCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:4010713424 AT1G10588 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 42/80 (52%), Positives = 52/80 (65%)

Query:    10 VCSLILSFSLLEPATAGSPFCDSKCAERCKQAG-VQDRCLKYCGICCEDCKCVPSGTYGN 68
             + SL+L+ S    ++A S  C  KC+ RC +A    + CL+ C ICC+ C CVPSGTYGN
Sbjct:    11 IISLLLTSSFYVLSSADSSACGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGN 70

Query:    69 KHECPCYRDKVNKKGKPKCP 88
             K ECPCYRD  N KG  KCP
Sbjct:    71 KDECPCYRDMKNSKGGSKCP 90

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:505006327 GASA5 "GAST1 protein homolog 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/91 (41%), Positives = 53/91 (58%)

Query:     3 LHFTTVVVCSLILSFS-LLEPATAGSPF----CDSKCAERCKQAGVQDRCLKYCGICCED 57
             L F T++    +LS S L++ A  G       C+SKC+ RC     +  C+ +C  CC+ 
Sbjct:    10 LFFLTLL---FLLSVSNLVQAARGGGKLKPQQCNSKCSFRCSATSHKKPCMFFCLKCCKK 66

Query:    58 CKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             C CVP GT+GNK  CPCY +   K+G+PKCP
Sbjct:    67 CLCVPPGTFGNKQTCPCYNNWKTKEGRPKCP 97

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

TAIR|locus:4010713737 AT3G10185 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 35/86 (40%), Positives = 45/86 (52%)

Query:     3 LHFTTVVVCSLILSFSLLEPATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVP 62
             +HF  + VC+   + S + P       C  +C +RC     +  CL +C  CC  C CVP
Sbjct:    23 MHFL-INVCAECETKSAIPPLLE----CGPRCGDRCSNTQYKKPCLFFCNKCCNKCLCVP 77

Query:    63 SGTYGNKHECPCYRDKVNKKGKPKCP 88
              GTYGNK  CPCY +   K G PKCP
Sbjct:    78 PGTYGNKQVCPCYNNWKTKSGGPKCP 103

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2052876 AT2G30810 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 30/59 (50%), Positives = 35/59 (59%)

Query:    30 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             C   C  RC     +  CL +C  CC  C CVPSGTYG+K ECPCY +   K+G PKCP
Sbjct:    48 CPKACEYRCSATSHRKPCLFFCNKCCNKCLCVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

TAIR|locus:2019195 GASA6 "AT1G74670" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 29/67 (43%), Positives = 36/67 (53%)

Query:    22 PATAGSPFCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNK 81
             P +  S  C  +C  RC        C+ +C  CC  C CVP GTYGNK  CPCY +   +
Sbjct:    35 PGSLKSYQCGGQCTRRCSNTKYHKPCMFFCQKCCAKCLCVPPGTYGNKQVCPCYNNWKTQ 94

Query:    82 KGKPKCP 88
             +G PKCP
Sbjct:    95 QGGPKCP 101

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009744 "response to sucrose stimulus" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0009750 "response to fructose stimulus" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2150896 GASA4 "AT5G15230" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 27/59 (45%), Positives = 34/59 (57%)

Query:    30 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             C S+C  RCK+      C+ +C  CC  C CVP G YGNK  C CY +   ++G PKCP
Sbjct:    48 CPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS

GO:0045454 "cell redox homeostasis" evidence=IMP

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2199645 AT1G22690 "AT1G22690" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 26/59 (44%), Positives = 30/59 (50%)

Query:    30 CDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
             C   CA RC +   +  C + CG CC  C+CVP GT GN   CPCY        K KCP
Sbjct:    61 CGHACARRCSKTSRKKVCHRACGSCCAKCQCVPPGTSGNTASCPCYASIRTHGNKLKCP 119

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q948Z4	SNAK1_SOLTU	No assigned EC number	0.7432	0.8409	0.8409	N/A	no
P86888	PMLN_PRUPE	No assigned EC number	0.7777	0.7159	1.0	N/A	no
Q8LFM2	GASAA_ARATH	No assigned EC number	0.5955	1.0	0.9887	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00400379 hypothetical protein (88 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam02704	60	pfam02704, GASA, Gibberellin regulated protein	3e-21

>gnl|CDD|190394 pfam02704, GASA, Gibberellin regulated protein

 Score = 78.1 bits (193), Expect = 3e-21
 Identities = 32/60 (53%), Positives = 37/60 (61%)

Query: 29 FCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP 88
           C  KCA RC +   +  CL+ CG CC  C CVP GTYGNK ECPCY +     G+PKCP
Sbjct: 1  DCGGKCAVRCSKTSRKKPCLRACGKCCAKCLCVPPGTYGNKDECPCYNNWKTHGGRPKCP 60

This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF02704	60	GASA: Gibberellin regulated protein; InterPro: IPR	100.0
PF11912	212	DUF3430: Protein of unknown function (DUF3430); In	82.19
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	81.08

>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family

Probab=100.00  E-value=2.2e-38  Score=201.89  Aligned_cols=60  Identities=58%  Similarity=1.417  Sum_probs=59.5

Q ss_pred             CChHHhHHHHhccCccchHHHHhhhhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 034644           29 FCDSKCAERCKQAGVQDRCLKYCGICCEDCKCVPSGTYGNKHECPCYRDKVNKKGKPKCP   88 (88)
Q Consensus        29 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gt~gnk~~CpCY~~~~t~~g~pKCP   88 (88)
                      ||+++|++|||+++++++||++||+||++|+|||||||||+||||||+||+||+|+||||
T Consensus         1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP   60 (60)
T PF02704_consen    1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP   60 (60)
T ss_pred             CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence            799999999999999999999999999999999999999999999999999999999999

The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.

>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised

Probab=82.19  E-value=1.2  Score=31.58  Aligned_cols=16  Identities=31%  Similarity=0.542  Sum_probs=9.4

Q ss_pred             CchhHHHHHHHHHHHH
Q 034644            1 MKLHFTTVVVCSLILS   16 (88)
Q Consensus         1 mk~~~~~~ll~~lll~   16 (88)
                      |||+++++||+++++.
T Consensus         1 MKll~~lilli~~~~~   16 (212)
T PF11912_consen    1 MKLLISLILLILLIIN   16 (212)
T ss_pred             CcHHHHHHHHHHHHHh
Confidence            9987655554444443

This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=81.08  E-value=1.4  Score=29.79  Aligned_cols=9  Identities=22%  Similarity=0.593  Sum_probs=3.4

Q ss_pred             HHHHHHHHH
Q 034644            8 VVVCSLILS   16 (88)
Q Consensus         8 ~ll~~lll~   16 (88)
                      +||++|||+
T Consensus        11 l~LA~lLli   19 (95)
T PF07172_consen   11 LLLAALLLI   19 (95)
T ss_pred             HHHHHHHHH
Confidence            333333433

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00