Citrus Sinensis ID: 034652

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVSE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MKHVVKILTLLVAITALWFGLlqtsviprshtgllpIYFIVSLGCYGLLMVGIGlmyfptcpqEALLLQQDIKEAKEYLErkgidvse
Flexible Loop (DISEMBL)
MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYlerkgidvse
Low Complexity Region (SEG)
MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVSE
Disordered region (IsUnstruct)
***VVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIK***************
Disordered Region (DISOPRED)
*KHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGID***
Disordered Region (DISEMBL)
MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVSE
Disordered Region (DISPRO)
*KHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKG*****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
Q3ZC71	92	Dolichol-phosphate mannos	yes	no	0.568	0.543	0.44	8e-05
Q5R8B1	92	Dolichol-phosphate mannos	yes	no	0.568	0.543	0.44	9e-05
Q9P2X0	92	Dolichol-phosphate mannos	yes	no	0.568	0.543	0.44	9e-05
Q9D1Q4	92	Dolichol-phosphate mannos	yes	no	0.568	0.543	0.44	0.0004

>sp|Q3ZC71|DPM3_BOVIN Dolichol-phosphate mannosyltransferase subunit 3 OS=Bos taurus GN=DPM3 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
          LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLTRRGL 90

Stabilizer subunit of the dolichol-phosphate-mannose synthase complex.
Bos taurus (taxid: 9913)

>sp|Q5R8B1|DPM3_PONAB Dolichol-phosphate mannosyltransferase subunit 3 OS=Pongo abelii GN=DPM3 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
          LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 90

Stabilizer subunit of the dolichol-phosphate-mannose synthase complex.

Pongo abelii (taxid: 9601)

>sp|Q9P2X0|DPM3_HUMAN Dolichol-phosphate mannosyltransferase subunit 3 OS=Homo sapiens GN=DPM3 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
          LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 90

Stabilizer subunit of the dolichol-phosphate-mannose synthase complex.

Homo sapiens (taxid: 9606)

>sp|Q9D1Q4|DPM3_MOUSE Dolichol-phosphate mannosyltransferase subunit 3 OS=Mus musculus GN=Dpm3 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query: 35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
          LP Y +VS GCY L  VG  +  F  C   A  LQ  I EA+  L R+G+
Sbjct: 41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIVEARADLARRGL 90

Stabilizer subunit of the dolichol-phosphate-mannose synthase complex.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
388514399	89	unknown [Medicago truncatula]	0.988	0.977	0.804	7e-35
224069858	89	predicted protein [Populus trichocarpa]	0.977	0.966	0.790	2e-34
449466097	89	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.784	8e-34
388501478	89	unknown [Lotus japonicus]	0.988	0.977	0.793	1e-33
297847064	89	hypothetical protein ARALYDRAFT_314249 [	1.0	0.988	0.75	4e-33
18402057	89	dolichyl-phosphate mannosyltransferase p	1.0	0.988	0.738	5e-33
225437991	89	PREDICTED: uncharacterized protein LOC10	1.0	0.988	0.75	1e-31
357159365	89	PREDICTED: dolichol-phosphate mannosyltr	1.0	0.988	0.681	2e-30
242037955	89	hypothetical protein SORBIDRAFT_01g00657	1.0	0.988	0.681	3e-30
326497253	89	predicted protein [Hordeum vulgare subsp	1.0	0.988	0.670	4e-30

>gi|388514399|gb|AFK45261.1| unknown [Medicago truncatula]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 82/87 (94%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKIL+L++AITALW GLLQTS IP+SHT LLPIYF+VSLGCYGLLMVG+GLM FPT
Sbjct: 1  MKHIVKILSLVIAITALWIGLLQTSTIPQSHTWLLPIYFVVSLGCYGLLMVGVGLMNFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVS 87
          CPQEALLLQ+DI EAKEYL+++G+DVS
Sbjct: 61 CPQEALLLQKDIVEAKEYLKQRGVDVS 87

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069858|ref|XP_002303057.1| predicted protein [Populus trichocarpa] gi|222844783|gb|EEE82330.1| predicted protein [Populus trichocarpa]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 80/86 (93%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKI+ LLVAI+A W GLLQTS+IPRSHT LLPIYF++SLGCYGLLMVG+GLM FPT
Sbjct: 1  MKHIVKIMVLLVAISACWIGLLQTSIIPRSHTWLLPIYFVISLGCYGLLMVGVGLMNFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDV 86
          CPQEALLLQQDI EAK++L+R+G+DV
Sbjct: 61 CPQEALLLQQDIVEAKDFLKRRGVDV 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466097|ref|XP_004150763.1| PREDICTED: uncharacterized protein LOC101208748 [Cucumis sativus] gi|449508354|ref|XP_004163291.1| PREDICTED: uncharacterized LOC101208748 [Cucumis sativus]

 Score =  147 bits (371), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/88 (78%), Positives = 79/88 (89%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKILTLLVAI+ALW GLLQTS++P  HT LLPIYFIVSLGCYGLLMVGIGLM FPT
Sbjct: 1  MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLLPIYFIVSLGCYGLLMVGIGLMTFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CP E LLLQ+D+ EAKEYL++KG+DV+ 
Sbjct: 61 CPAEGLLLQKDVDEAKEYLKKKGVDVNS 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501478|gb|AFK38805.1| unknown [Lotus japonicus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 81/87 (93%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKILTL++ ITALW GLLQTS+IP+SHT LLPIYF+VSLGCYGLLMVG+GLM F T
Sbjct: 1  MKHIVKILTLIMTITALWIGLLQTSMIPQSHTWLLPIYFVVSLGCYGLLMVGVGLMNFRT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVS 87
          CPQEALLLQ+DI EAKEYL+++G+DVS
Sbjct: 61 CPQEALLLQKDIVEAKEYLKQRGVDVS 87

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847064|ref|XP_002891413.1| hypothetical protein ARALYDRAFT_314249 [Arabidopsis lyrata subsp. lyrata] gi|297337255|gb|EFH67672.1| hypothetical protein ARALYDRAFT_314249 [Arabidopsis lyrata subsp. lyrata]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 78/88 (88%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKIL+LLVAI+A W GLLQ ++IPRSHT LLPIYF+VSLGCYGLLMVGIGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGIGLMQFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEA+LLQ+DI EAK++ + KG+DV  
Sbjct: 61 CPQEAVLLQKDIAEAKDFFKHKGVDVGS 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402057|ref|NP_564521.1| dolichyl-phosphate mannosyltransferase polypeptide 3 [Arabidopsis thaliana] gi|21553435|gb|AAM62528.1| unknown [Arabidopsis thaliana] gi|26451193|dbj|BAC42700.1| unknown protein [Arabidopsis thaliana] gi|28973443|gb|AAO64046.1| unknown protein [Arabidopsis thaliana] gi|332194132|gb|AEE32253.1| dolichyl-phosphate mannosyltransferase polypeptide 3 [Arabidopsis thaliana]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 78/88 (88%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+VKIL+LLVAI+A W GLLQ ++IPRSHT LLPIYF+VSLGCYGLLMVG+GLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEA+LLQ+DI EAK++ + KG+DV  
Sbjct: 61 CPQEAVLLQKDIAEAKDFFKHKGVDVGS 88

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437991|ref|XP_002272906.1| PREDICTED: uncharacterized protein LOC100232877 [Vitis vinifera] gi|30315013|gb|AAP30738.1| unknown [Vitis vinifera] gi|297744211|emb|CBI37181.3| unnamed protein product [Vitis vinifera]

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/88 (75%), Positives = 77/88 (87%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+ KI+ LLVAI ALW GLLQTS+IP+S+  LLPIY +V+LGCYGLLMVG+GLM FPT
Sbjct: 1  MKHIFKIMALLVAIAALWIGLLQTSMIPQSYALLLPIYSVVTLGCYGLLMVGVGLMQFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEALLLQQDI EAKE+L+RKG+DV  
Sbjct: 61 CPQEALLLQQDIIEAKEFLQRKGVDVGS 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357159365|ref|XP_003578423.1| PREDICTED: dolichol-phosphate mannosyltransferase subunit 3-like [Brachypodium distachyon]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 74/88 (84%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+ KI+ +LVAI+A W  LL+TS +PRS+T LLPIY +V+LGCYGL MVG GLM+FPT
Sbjct: 1  MKHIFKIIAVLVAISAFWVALLETSTVPRSYTWLLPIYLVVALGCYGLFMVGFGLMFFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEA+LLQQDI EAKE+L +KG+DV  
Sbjct: 61 CPQEAILLQQDIVEAKEFLAKKGVDVGS 88

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242037955|ref|XP_002466372.1| hypothetical protein SORBIDRAFT_01g006570 [Sorghum bicolor] gi|241920226|gb|EER93370.1| hypothetical protein SORBIDRAFT_01g006570 [Sorghum bicolor]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 74/88 (84%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+ KI  +LVAI+A+W  LL+TS +PRS+T LLPIY +V+LGCYGL MVG GLM+FPT
Sbjct: 1  MKHIFKIAAILVAISAIWIALLETSTVPRSYTWLLPIYLVVALGCYGLFMVGFGLMFFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEA+LLQQDI EAKE+L +KG+DV  
Sbjct: 61 CPQEAVLLQQDIVEAKEFLAKKGVDVGS 88

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326497253|dbj|BAK02211.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326503060|dbj|BAJ99155.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326505146|dbj|BAK02960.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/88 (67%), Positives = 75/88 (85%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
          MKH+ KI+ +L AI+A+W  LL+TS +PRS+T LLPIY +V+LGCYGL MVG GLM+FPT
Sbjct: 1  MKHIFKIIAVLAAISAVWVALLETSTVPRSYTWLLPIYLVVALGCYGLFMVGYGLMFFPT 60

Query: 61 CPQEALLLQQDIKEAKEYLERKGIDVSE 88
          CPQEA+LLQQDI EAKE+L ++G+DVS 
Sbjct: 61 CPQEAVLLQQDIVEAKEFLSKRGVDVSS 88

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
TAIR|locus:2023762	89	DPMS3 "dolichol phosphate mann	0.977	0.966	0.755	5.2e-33
ASPGD|ASPL0000063661	92	AN6992 [Emericella nidulans (t	0.965	0.923	0.298	3.4e-06
RGD|1561807	92	Dpm3 "dolichyl-phosphate manno	0.875	0.836	0.412	1.1e-05
DICTYBASE|DDB_G0277435	92	dpm3 "dolichol-phosphate manno	0.954	0.913	0.3	1.9e-05
UNIPROTKB|Q3ZC71	92	DPM3 "Dolichol-phosphate manno	0.568	0.543	0.44	1.9e-05
UNIPROTKB|Q9P2X0	92	DPM3 "Dolichol-phosphate manno	0.568	0.543	0.44	1.9e-05
UNIPROTKB|E2RLU1	101	DPM3 "Uncharacterized protein"	0.568	0.495	0.44	2.4e-05
UNIPROTKB|F1RGR6	94	DPM3 "Uncharacterized protein"	0.568	0.531	0.44	2.4e-05
MGI|MGI:1915813	92	Dpm3 "dolichyl-phosphate manno	0.568	0.543	0.44	3.9e-05
UNIPROTKB|G4N937	92	MGG_10055 "Dolichyl-phosphate	0.693	0.663	0.363	0.00057

TAIR|locus:2023762 DPMS3 "dolichol phosphate mannose synthase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 65/86 (75%), Positives = 78/86 (90%)

Query:     1 MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPT 60
             MKH+VKIL+LLVAI+A W GLLQ ++IPRSHT LLPIYF+VSLGCYGLLMVG+GLM FPT
Sbjct:     1 MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query:    61 CPQEALLLQQDIKEAKEYLERKGIDV 86
             CPQEA+LLQ+DI EAK++ + KG+DV
Sbjct:    61 CPQEAVLLQKDIAEAKDFFKHKGVDV 86

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IPI

GO:0009853 "photorespiration" evidence=RCA

ASPGD|ASPL0000063661 AN6992 [Emericella nidulans (taxid:162425)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 26/87 (29%), Positives = 47/87 (54%)

Query:     2 KHVVKILTLLVAI-TALWFGLLQTS-VIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFP 59
             +  + +L L+ +   +L+ GL+  +  I +    +LP Y ++S GCY L  +G+ +  F 
Sbjct:     5 QQTLSVLLLVSSFYLSLYLGLIPLNETIQQEIIPVLPFYALISFGCYLLGRLGLAIFTFH 64

Query:    60 TCPQEALLLQQDIKEAKEYLERKGIDV 86
               P+    LQ +I++AK  L R  +DV
Sbjct:    65 DVPEAHKELQGEIEQAKAELRRANVDV 91

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1561807 Dpm3 "dolichyl-phosphate mannosyltransferase polypeptide 3" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 33/80 (41%), Positives = 39/80 (48%)

Query:     8 LTLL-VAITALWFGLLQTSV-IP-RSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQE 64
             L LL  A  AL  G L   + +P R     LP Y +VS GCY L  VG  +  F  C   
Sbjct:    11 LALLGSAWAALTMGALGLELPLPCREVLWPLPAYLLVSAGCYALGTVGYRVATFHDCEDA 70

Query:    65 ALLLQQDIKEAKEYLERKGI 84
             A  LQ  I EA+  L RKG+
Sbjct:    71 ARELQSQILEARADLARKGL 90

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA;ISO

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0031647 "regulation of protein stability" evidence=IEA;ISO

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA;ISO

DICTYBASE|DDB_G0277435 dpm3 "dolichol-phosphate mannosyltransferase subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 27/90 (30%), Positives = 42/90 (46%)

Query:     1 MKHVVKILTLLVAITALWFGL----LQTSVIP--RSHTGLLPIYFIVSLGCYGLLMVGIG 54
             MK   K+      +   W  L    +Q ++ P  +S    LP+Y +V  G Y L ++   
Sbjct:     1 MKRYQKVFITFTFLMTFWLLLVLEKIQLNLSPSIQSIIPFLPLYAVVCFGSYSLGVIAYN 60

Query:    55 LMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             L+    C + +  L  +IKEAKE L  KG+
Sbjct:    61 LLIMSDCKEASESLFDEIKEAKESLRAKGM 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q3ZC71 DPM3 "Dolichol-phosphate mannosyltransferase subunit 3" [Bos taurus (taxid:9913)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query:    35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct:    41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLTRRGL 90

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IEA

UNIPROTKB|Q9P2X0 DPM3 "Dolichol-phosphate mannosyltransferase subunit 3" [Homo sapiens (taxid:9606)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query:    35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct:    41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGL 90

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IDA

GO:0006506 "GPI anchor biosynthetic process" evidence=IDA;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0031647 "regulation of protein stability" evidence=IPI

GO:0005975 "carbohydrate metabolic process" evidence=NAS

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0031501 "mannosyltransferase complex" evidence=TAS

GO:0035268 "protein mannosylation" evidence=TAS

GO:0035269 "protein O-linked mannosylation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0018406 "protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan" evidence=TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0006501 "C-terminal protein lipidation" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|E2RLU1 DPM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query:    35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct:    50 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGM 99

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IEA

UNIPROTKB|F1RGR6 DPM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query:    35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             LP Y +VS GCY L  VG  +  F  C   A  LQ  I+EA+  L R+G+
Sbjct:    43 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIQEARADLARRGM 92

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IEA

MGI|MGI:1915813 Dpm3 "dolichyl-phosphate mannosyltransferase polypeptide 3" [Mus musculus (taxid:10090)]

 Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 22/50 (44%), Positives = 27/50 (54%)

Query:    35 LPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGI 84
             LP Y +VS GCY L  VG  +  F  C   A  LQ  I EA+  L R+G+
Sbjct:    41 LPAYLLVSAGCYALGTVGYRVATFHDCEDAARELQSQIVEARADLARRGL 90

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006506 "GPI anchor biosynthetic process" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=ISO

GO:0031647 "regulation of protein stability" evidence=ISO

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=ISO

UNIPROTKB|G4N937 MGG_10055 "Dolichyl-phosphate mannosyltransferase polypeptide 3" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
 Identities = 24/66 (36%), Positives = 37/66 (56%)

Query:    21 LLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE 80
             ++QT VIP     +LP + +VS G   L  +G G++ F   P+    L  +I+EAK+ L 
Sbjct:    31 VIQTEVIP-----VLPFWVLVSFGALLLGRLGWGVLTFNDTPEAHKELLVEIEEAKKDLR 85

Query:    81 RKGIDV 86
             R G+ V
Sbjct:    86 RLGVTV 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.145   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       88        88   0.00091  102 3  11 22  0.40    29
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  514 (55 KB)
  Total size of DFA:  96 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.84u 0.17s 10.01t   Elapsed:  00:00:01
  Total cpu time:  9.84u 0.17s 10.01t   Elapsed:  00:00:01
  Start:  Thu May  9 22:28:33 2013   End:  Thu May  9 22:28:34 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_II002473	hypothetical protein (89 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVI.1421.1	hypothetical protein (391 aa)						•			0.899
	gw1.IX.4952.1	hypothetical protein (586 aa)						•			0.899
	grail3.0004040902	hypothetical protein (222 aa)						•			0.899
	eugene3.01460030	transferase, transferring glycosyl groups (EC-2.4.1.142) (481 aa)						•			0.899
	estExt_fgenesh4_pm.C_280064	hypothetical protein (223 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_X1846	hypothetical protein (335 aa)						•			0.899
	estExt_fgenesh4_pg.C_LG_VIII0457	hypothetical protein (335 aa)						•			0.899
	estExt_Genewise1_v1.C_LG_XIV2606	SubName- Full=Putative uncharacterized protein; (424 aa)						•			0.899
	gw1.VII.3899.1	SubName- Full=Putative uncharacterized protein; (346 aa)						•			0.800
	gw1.III.152.1	hypothetical protein (483 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	88
pfam08285	91	pfam08285, DPM3, Dolichol-phosphate mannosyltransf	1e-27

>gnl|CDD|219779 pfam08285, DPM3, Dolichol-phosphate mannosyltransferase subunit 3 (DPM3)

 Score = 95.4 bits (238), Expect = 1e-27
 Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 5/91 (5%)

Query: 1  MKHVVKILTLLVAITALWFGLLQTSV-----IPRSHTGLLPIYFIVSLGCYGLLMVGIGL 55
          M  + + L LLVA++AL+  LL   +       +    LLP Y +VS G Y L  VG GL
Sbjct: 1  MTKITEWLLLLVALSALYIALLLGLIPLPTKPYQEILPLLPFYLLVSFGSYSLGTVGYGL 60

Query: 56 MYFPTCPQEALLLQQDIKEAKEYLERKGIDV 86
          + F  CP+ A  LQ++IKEAKE L  KG+DV
Sbjct: 61 LTFNDCPEAAKELQKEIKEAKEDLRSKGVDV 91

This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF08285	91	DPM3: Dolichol-phosphate mannosyltransferase subun	100.0
KOG4841	95	consensus Dolichol-phosphate mannosyltransferase,	99.96
PRK11677	134	hypothetical protein; Provisional	93.33
PF10112	199	Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate	92.25
PF14138	80	COX16: Cytochrome c oxidase assembly protein COX16	91.56
PF06305	68	DUF1049: Protein of unknown function (DUF1049); In	90.9
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	89.61
PF01956	168	DUF106: Integral membrane protein DUF106; InterPro	89.4
COG5664	201	Predicted secreted Zn-dependent protease [Posttran	85.93
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	85.34
PRK06628	290	lipid A biosynthesis lauroyl acyltransferase; Prov	82.31
PF10815	56	ComZ: ComZ; InterPro: IPR024558 ComZ, which contai	80.37

>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation

Probab=100.00  E-value=9.4e-44  Score=235.33  Aligned_cols=86  Identities=42%  Similarity=0.772  Sum_probs=79.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcccC-c----cccchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHH
Q 034652            1 MKHVVKILTLLVAITALWFGLLQTSVI-P----RSHTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEA   75 (88)
Q Consensus         1 M~r~~~~l~~~~~l~~~w~~l~~~~l~-p----~~~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eA   75 (88)
                      |||++||++.+++++++|+++++..+. |    ++++|++|+|++++|||||+++|||||+|||||||||+|||+||+||
T Consensus         1 Mtr~~~~l~~~~~l~~~w~~l~~~~~~~~~~~~~~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI~eA   80 (91)
T PF08285_consen    1 MTRLQQWLSALLLLSALWLALLLGLLPLPPEPQQEIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEIKEA   80 (91)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999964442 2    24689999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcc
Q 034652           76 KEYLERKGIDV   86 (88)
Q Consensus        76 k~dL~~kG~~~   86 (88)
                      |+|||+||+++
T Consensus        81 K~dLr~kGv~~   91 (91)
T PF08285_consen   81 KADLRKKGVDV   91 (91)
T ss_pred             HHHHHHcCCCC
Confidence            99999999986

DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].

>KOG4841 consensus Dolichol-phosphate mannosyltransferase, subunit 3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.96  E-value=7.3e-30  Score=169.10  Aligned_cols=86  Identities=30%  Similarity=0.531  Sum_probs=69.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHh-cccCccc---cchhHHHHHHHHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHH
Q 034652            1 MKHVVKILTLLVAITALWFGLLQ-TSVIPRS---HTGLLPIYFIVSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAK   76 (88)
Q Consensus         1 M~r~~~~l~~~~~l~~~w~~l~~-~~l~p~~---~~~~lP~~~lv~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk   76 (88)
                      |++.-.|+....+..++|..... ...+|++   ..++-|+|+++++|||+++++||||+||||||||+.|||+||+|||
T Consensus         6 ~t~~ah~~~~~~V~l~~~~~vt~~l~~Leeplscl~~y~P~~~~l~~G~Ya~~tv~Y~VATfnDc~eA~veL~~~IkEAr   85 (95)
T KOG4841|consen    6 MTKLAHWLWGLAVLLSTWVAVTTGLLGLEEPLSCLEVYWPLYLLLSAGCYALGTVGYRVATFNDCEEAAVELQSQIKEAR   85 (95)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCcccHHHHHhhhHHHHHHHHHhHhhhhheeeeeccCCcHHHHHHHHHHHHHHH
Confidence            44455555666666677777652 2224432   4589999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcc
Q 034652           77 EYLERKGIDV   86 (88)
Q Consensus        77 ~dL~~kG~~~   86 (88)
                      +|||+||+++
T Consensus        86 ~~L~rkg~ri   95 (95)
T KOG4841|consen   86 ADLARKGLRI   95 (95)
T ss_pred             HHHHHccCCC
Confidence            9999999875

>PRK11677 hypothetical protein; Provisional

Probab=93.33  E-value=0.35  Score=34.07  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCch-HHHHHHHHHHHHHHHHHHh
Q 034652           38 YFIVSLGCYGLLMVGIGLMYFPTCP-QEALLLQQDIKEAKEYLER   81 (88)
Q Consensus        38 ~~lv~fG~Ysl~~vgy~v~tFnDcp-eA~~eL~~eI~eAk~dL~~   81 (88)
                      |.+.+.|.-..+.|||-+.+|-+.. ....+|++|.+++|.+|.+
T Consensus         3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~   47 (134)
T PRK11677          3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEE   47 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Confidence            5666677777888999999985544 6889999999999999854

>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds

Probab=92.25  E-value=1.9  Score=30.95  Aligned_cols=18  Identities=33%  Similarity=0.434  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 034652           64 EALLLQQDIKEAKEYLER   81 (88)
Q Consensus        64 A~~eL~~eI~eAk~dL~~   81 (88)
                      .++..++.++||++.+++
T Consensus        69 e~~~~~~~l~ea~~~i~~   86 (199)
T PF10112_consen   69 EYEYIREILEEAKEKIRR   86 (199)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            356678889999988875

>PF14138 COX16: Cytochrome c oxidase assembly protein COX16

Probab=91.56  E-value=0.14  Score=33.05  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhccCC
Q 034652           35 LPIYFIVSLGCYGLLMVGIGLMYFPT   60 (88)
Q Consensus        35 lP~~~lv~fG~Ysl~~vgy~v~tFnD   60 (88)
                      +|+.++++.|+|.|....-+=..+.|
T Consensus         5 lPf~~liV~GS~gL~~ftq~Rye~~d   30 (80)
T PF14138_consen    5 LPFLLLIVGGSFGLSEFTQIRYERRD   30 (80)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            79999999999999887766666655

>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=90.90  E-value=1  Score=26.83  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHHHHHHHHHHHHh
Q 034652           35 LPIYFIVSLGCYGLLMVGIGLMYF---PTCPQEALLLQQDIKEAKEYLER   81 (88)
Q Consensus        35 lP~~~lv~fG~Ysl~~vgy~v~tF---nDcpeA~~eL~~eI~eAk~dL~~   81 (88)
                      +|++.++ ++++.+|.+.-.+++.   --..-+.+.+++|+++.++++.+
T Consensus        18 ~pl~l~i-l~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~~~   66 (68)
T PF06305_consen   18 LPLGLLI-LIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKELEQ   66 (68)
T ss_pred             chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555433 3333333333333333   33467778888888888887764

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=89.61  E-value=0.23  Score=30.09  Aligned_cols=40  Identities=25%  Similarity=0.123  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHH
Q 034652           41 VSLGCYGLLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLE   80 (88)
Q Consensus        41 v~fG~Ysl~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~   80 (88)
                      +++.++.+..+.++..+..+.....++|+++|++.++.-+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~i~~l~~e~~   41 (80)
T PF04977_consen    2 LLFLVIFLVFGISGYSRYYQLNQEIAELQKEIEELKKENE   41 (80)
T ss_pred             eeehhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577888899999999999999999999999888776543

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function

Probab=89.40  E-value=1.6  Score=30.51  Aligned_cols=50  Identities=20%  Similarity=0.143  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcc---CCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652           34 LLPIYFIVSLGCYGLLMVGIGLMYF---PTCPQEALLLQQDIKEAKEYLERKGI   84 (88)
Q Consensus        34 ~lP~~~lv~fG~Ysl~~vgy~v~tF---nDcpeA~~eL~~eI~eAk~dL~~kG~   84 (88)
                      .+|++.++.+-+-..+.+.--+-.+   ++ .+.+++.++++++..+.++++|=
T Consensus        12 ~~P~~i~v~~~~~~~~~~s~l~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~   64 (168)
T PF01956_consen   12 LLPITIVVFLIAILRGLISELLQKFLIDRK-MDKYQKRMKEFQKRYRELRKNGD   64 (168)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHcCC
Confidence            5688655554444444433333333   45 69999999999999999998874

Members are predicted to be integral membrane proteins.; GO: 0016020 membrane

>COG5664 Predicted secreted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=85.93  E-value=0.94  Score=33.98  Aligned_cols=40  Identities=20%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             HHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHhcCCccC
Q 034652           48 LLMVGIGLMYFPTCPQEALLLQQDIKEAKEYLERKGIDVS   87 (88)
Q Consensus        48 l~~vgy~v~tFnDcpeA~~eL~~eI~eAk~dL~~kG~~~d   87 (88)
                      -++.|.+|..=+.|-..-.|+|++|.+--+.-|+||.|||
T Consensus       141 a~t~GL~vanDPkC~K~R~e~~~rl~~is~~qrqk~rdFD  180 (201)
T COG5664         141 AATTGLRVANDPKCRKIRRELQKRLGAISAEQRQKGRDFD  180 (201)
T ss_pred             HHhcccccCCChhHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            4678889998888999999999999999999999999998

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.34  E-value=2.7  Score=28.81  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             HHHHHHHHHhhhccCCch-HHHHHHHHHHHHHHHHHHhc
Q 034652           45 CYGLLMVGIGLMYFPTCP-QEALLLQQDIKEAKEYLERK   82 (88)
Q Consensus        45 ~Ysl~~vgy~v~tFnDcp-eA~~eL~~eI~eAk~dL~~k   82 (88)
                      .-..+.|||-+.+|..-. ....+|++|++++|.+|.+-
T Consensus         6 lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y   44 (128)
T PF06295_consen    6 LVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY   44 (128)
T ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence            334456777777665544 44579999999999998753

>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional

Probab=82.31  E-value=7.2  Score=29.41  Aligned_cols=55  Identities=20%  Similarity=0.173  Sum_probs=35.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHhcccCccccchhHHHHHHHHHHHHHHHHHHH-----hhhc------cCCchH
Q 034652            1 MKHVVKILTLLVAITALWFGLLQTSVIPRSHTGLLPIYFIVSLGCYGLLMVGI-----GLMY------FPTCPQ   63 (88)
Q Consensus         1 M~r~~~~l~~~~~l~~~w~~l~~~~l~p~~~~~~lP~~~lv~fG~Ysl~~vgy-----~v~t------FnDcpe   63 (88)
                      |||..+-+...+...++|.....   +|     .+|.+....+|-.....+|+     .++.      |+|.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~l---~~-----~~p~~~~~~~~~~l~~~~~~l~~~r~v~~~NL~~~fPe~~~   66 (290)
T PRK06628          1 MKKFLKKLRYLIEYFIVVIFLKV---IG-----IFGVDKAADICSFIARKVGILFAVNKIARRNIKAVFGDMCD   66 (290)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH---HH-----hCChHHHHHHHHHHHHHhccchhHHHHHHHHHHHHCCCCCH
Confidence            88888877666666666643322   23     67777777777666666665     3433      888775

>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon []

Probab=80.37  E-value=1.9  Score=26.50  Aligned_cols=19  Identities=47%  Similarity=0.700  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHhcCCccC
Q 034652           69 QQDIKEAKEYLERKGIDVS   87 (88)
Q Consensus        69 ~~eI~eAk~dL~~kG~~~d   87 (88)
                      +|-+-|||+.|.++|++++
T Consensus        11 MK~lPEak~~L~k~GIeLs   29 (56)
T PF10815_consen   11 MKYLPEAKEELDKKGIELS   29 (56)
T ss_pred             HHHhHHHHHHHHHcCccCC
Confidence            4667899999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
2cp9_A	64	EF-TS, EF-TSMT, elongation factor TS, mitochondria	88.11

>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2

Probab=88.11  E-value=0.061  Score=32.79  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=25.7

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 034652           57 YFPTCPQEALLLQQDIKEAKEYLERKGI   84 (88)
Q Consensus        57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~   84 (88)
                      .+.||.+|-+|-..+|++|-..||+||.
T Consensus        23 g~~dcKkAL~e~~GDi~~Ai~~Lr~kg~   50 (64)
T 2cp9_A           23 SFVNCKKALETCGGDLKQAEIWLHKEAQ   50 (64)
T ss_dssp             CHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHHhH
Confidence            5679999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1aipc1	52	Elongation factor Ts (EF-Ts), N-terminal domain {T	91.17
d1efub3	54	Elongation factor Ts (EF-Ts), N-terminal domain {E	90.82
d1xb2b1	56	Elongation factor Ts (EF-Ts), N-terminal domain {C	90.58

>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.17  E-value=0.0098  Score=33.70  Aligned_cols=29  Identities=14%  Similarity=0.006  Sum_probs=26.1

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652           57 YFPTCPQEALLLQQDIKEAKEYLERKGID   85 (88)
Q Consensus        57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~   85 (88)
                      -+.||.+|-+|-..+|+.|.+.||++|..
T Consensus        16 ~~~dcKkAL~e~~gD~ekA~e~Lr~~G~~   44 (52)
T d1aipc1          16 GMMDVKRALEDAGWDEEKAVQLLRERGAM   44 (52)
T ss_dssp             CHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHHhHH
Confidence            36799999999999999999999999863

>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.82  E-value=0.011  Score=33.69  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=26.1

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652           57 YFPTCPQEALLLQQDIKEAKEYLERKGID   85 (88)
Q Consensus        57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~   85 (88)
                      -+.||.+|-+|-..+++.|.+.||++|..
T Consensus        18 g~~dCKkAL~e~~gD~ekA~e~Lr~kG~~   46 (54)
T d1efub3          18 GMMDCKKALTEANGDIELAIENMRKSGAI   46 (54)
T ss_dssp             CHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHHhHH
Confidence            35699999999999999999999999863

>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TS-N domain
domain: Elongation factor Ts (EF-Ts), N-terminal domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.58  E-value=0.012  Score=33.79  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.1

Q ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 034652           57 YFPTCPQEALLLQQDIKEAKEYLERKGID   85 (88)
Q Consensus        57 tFnDcpeA~~eL~~eI~eAk~dL~~kG~~   85 (88)
                      .+.||.+|-+|=..+++.|.+.||++|..
T Consensus        18 ~~~dcKkAL~e~~gD~ekA~e~LrkkG~a   46 (56)
T d1xb2b1          18 SFINCKKALETCGGDLKQAESWLHKQAQK   46 (56)
T ss_dssp             CHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            36699999999999999999999999863