Citrus Sinensis ID: 034688

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIVIS
Secondary Structure (PSIPRED)
ccHHHHHHHcccEEEEEEEccccccEEEEEEEccccEEEEEEEEEccccHHHHHHHHHHccccccccccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccEEEEEcccccccEEEEEEcccccHHHHcHHHHHccHHHHHHHHHHcccHHHccccccEEEEEccccccEEEEEc
Coil and Loop (DISEMBL)
MSTAVELLdqghevdiyELRSFIGGKVASFVCkrgnhieiSLHVFFGCYNNLFRltkkvgadenllmkdHTHKFvnkggeiggivis
Flexible Loop (DISEMBL)
mstavelldqghevdiyELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENllmkdhthkfvnkggeiggivis
Low Complexity Region (SEG)
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIVIS
Disordered region (IsUnstruct)
******LLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIV**
Disordered Region (DISOPRED)
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE*******
Disordered Region (DISEMBL)
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIVIS
Disordered Region (DISPRO)
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIVIS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGIVIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
O49901	574	Zeta-carotene desaturase,	N/A	no	0.942	0.142	0.878	9e-39
Q9SMJ3	588	Zeta-carotene desaturase,	N/A	no	0.942	0.139	0.853	1e-37
Q9SE20	588	Zeta-carotene desaturase,	N/A	no	0.942	0.139	0.841	3e-37
Q9FV46	587	Zeta-carotene desaturase,	N/A	no	0.942	0.139	0.829	6e-37
Q38893	558	Zeta-carotene desaturase,	yes	no	0.942	0.146	0.804	1e-35
Q9ZTP4	570	Zeta-carotene desaturase,	N/A	no	0.942	0.143	0.804	3e-35
P74306	489	Zeta-carotene desaturase	N/A	no	0.942	0.167	0.695	2e-29
Q31N27	481	Probable zeta-carotene de	yes	no	0.896	0.162	0.615	3e-23
Q9R6X4	479	Zeta-carotene desaturase	yes	no	0.965	0.175	0.559	3e-23
Q40406	570	Phytoene dehydrogenase, c	N/A	no	0.919	0.140	0.402	3e-09

>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1

 Score =  158 bits (400), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           ADENLL+KDHTH FVN+GGEIG
Sbjct: 137 ADENLLVKDHTHTFVNRGGEIG 158

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
Narcissus pseudonarcissus (taxid: 39639)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 6

>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/82 (85%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R+FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 92  MSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 151

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           A++NLL+K+HTH FVNKGGEIG
Sbjct: 152 AEKNLLVKEHTHTFVNKGGEIG 173

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. No activity with all-trans-zeta-carotene. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1

 Score =  153 bits (387), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/82 (84%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R+FIGGKV SFV +RGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 92  MSTAVELLDQGHEVDIYESRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLLKKVG 151

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           A++NLL+K+HTH FVNKGGEIG
Sbjct: 152 AEKNLLVKEHTHTFVNKGGEIG 173

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/82 (82%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R+FIGGKV SFV K+GNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 95  MSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVG 154

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           A++NLL+KDHTH FVN+GGE+G
Sbjct: 155 AEKNLLVKDHTHTFVNRGGELG 176

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Tagetes erecta (taxid: 13708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3

 Score =  148 bits (374), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/82 (80%), Positives = 74/82 (90%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIY+ R+FIGGKV SFV +RGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 69  MSTAVELLDQGHEVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVG 128

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           A++NLL+KDHTH F+NK G IG
Sbjct: 129 AEKNLLVKDHTHTFINKDGTIG 150

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVD+YE R FIGGKV SFV ++GNHIE+ LHVFFGCY+NLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRQGNHIEMGLHVFFGCYSNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD NLL+K+HTH FVNKGG IG
Sbjct: 137 ADNNLLVKEHTHTFVNKGGTIG 158

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/82 (69%), Positives = 68/82 (82%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          M+TAVEL+D GHEV++YE RSFIGGKV S+V   GNHIE+ LHVFFGCY NLF L +KVG
Sbjct: 13 MATAVELVDAGHEVELYEARSFIGGKVGSWVDGDGNHIEMGLHVFFGCYYNLFNLMEKVG 72

Query: 61 ADENLLMKDHTHKFVNKGGEIG 82
          A +NL +K+HTH FVN+GG IG
Sbjct: 73 AKQNLRLKEHTHTFVNQGGRIG 94

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=zds PE=3 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 60/78 (76%)

Query: 5  VELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN 64
          ++L+D GH+V IY+ R F+GGKV S++   GNHIE+ LHVFF  Y NLF L +KVGA EN
Sbjct: 17 IDLVDAGHQVAIYDSRPFVGGKVGSWIDADGNHIEMGLHVFFFNYANLFALMRKVGAFEN 76

Query: 65 LLMKDHTHKFVNKGGEIG 82
          LL K HTH F+NKGGE+G
Sbjct: 77 LLPKAHTHTFINKGGEVG 94

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=crtQ PE=3 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/84 (55%), Positives = 61/84 (72%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++TA++L D G EV I+E R F+GGKV S++   GNH+E+ LHVFFGCY  LF L  KVG
Sbjct: 13 LATAIDLADAGCEVQIFESRPFVGGKVGSWIDGDGNHVEMGLHVFFGCYYQLFELMNKVG 72

Query: 61 ADENLLMKDHTHKFVNKGGEIGGI 84
          A  +L +K+HTH FVNKGG  G +
Sbjct: 73 AFSHLRLKEHTHTFVNKGGRTGAL 96

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q40406|CRTI_NARPS Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           +STA  L D GH+  + E R  +GGK+A++  K G+  E  LH+FFG Y N+  L  ++G
Sbjct: 110 LSTAKYLADAGHKPILLESRDVLGGKIAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELG 169

Query: 61  ADENLLMKDHTHKFV--NKGGE 80
            ++ L  K+H+  F   NK GE
Sbjct: 170 INDRLQWKEHSMIFAMPNKPGE 191

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
383831952	574	zeta-carotene desaturase [Narcissus taze	0.965	0.146	0.869	5e-38
160688660	574	zeta-carotene desaturase [Narcissus taze	0.965	0.146	0.857	2e-37
13991921	570	zeta-carotene desaturase precursor [Citr	0.942	0.143	0.890	2e-37
190576747	570	zeta carotene desaturase [Citrus maxima]	0.942	0.143	0.878	3e-37
383831960	574	zeta-carotene desaturase [Narcissus taze	0.942	0.142	0.878	4e-37
182258085	574	zeta-carotene desaturase [Narcissus taze	0.942	0.142	0.878	4e-37
17367473	574	RecName: Full=Zeta-carotene desaturase,	0.942	0.142	0.878	4e-37
83637848	570	zeta-carotene desaturase [Citrus unshiu]	0.942	0.143	0.878	5e-37
18073986	570	zeta-carotene desaturase [Citrus sinensi	0.942	0.143	0.878	5e-37
15824043	570	zeta-carotene desaturase [Citrus unshiu]	0.942	0.143	0.878	5e-37

>gi|383831952|gb|AFH53813.1| zeta-carotene desaturase [Narcissus tazetta var. chinensis]

 Score =  161 bits (408), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/84 (86%), Positives = 77/84 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIGGI 84
           ADENLL+KDHTH FVN+GGEIGG+
Sbjct: 137 ADENLLVKDHTHTFVNRGGEIGGL 160

Source: Narcissus tazetta var. chinensis

Species: Narcissus tazetta

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|160688660|gb|ABX45112.1| zeta-carotene desaturase [Narcissus tazetta var. chinensis]

 Score =  159 bits (403), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/84 (85%), Positives = 77/84 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIGGI 84
           ADE+LL+KDHTH FVN+GGEIGG+
Sbjct: 137 ADEDLLVKDHTHTFVNRGGEIGGL 160

Source: Narcissus tazetta var. chinensis

Species: Narcissus tazetta

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13991921|gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]

 Score =  159 bits (402), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/82 (89%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE RSFIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 73  MSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 132

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD+NLL+KDHTH FVNKGGEIG
Sbjct: 133 ADKNLLVKDHTHTFVNKGGEIG 154

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190576747|gb|ACE79169.1| zeta carotene desaturase [Citrus maxima]

 Score =  159 bits (401), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVD+YE RSFIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 73  MSTAVELLDQGHEVDVYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 132

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD+NLL+KDHTH FVNKGGEIG
Sbjct: 133 ADKNLLVKDHTHTFVNKGGEIG 154

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383831960|gb|AFH53817.1| zeta-carotene desaturase [Narcissus tazetta var. chinensis]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           ADENLL+KDHTH FVN+GGEIG
Sbjct: 137 ADENLLVKDHTHTFVNRGGEIG 158

Source: Narcissus tazetta var. chinensis

Species: Narcissus tazetta

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182258085|gb|ACB87206.1| zeta-carotene desaturase [Narcissus tazetta var. chinensis]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           ADENLL+KDHTH FVN+GGEIG
Sbjct: 137 ADENLLVKDHTHTFVNRGGEIG 158

Source: Narcissus tazetta var. chinensis

Species: Narcissus tazetta

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17367473|sp|O49901.1|ZDS_NARPS RecName: Full=Zeta-carotene desaturase, chloroplastic/chromoplastic; AltName: Full=9,9'-di-cis-zeta-carotene desaturase; AltName: Full=Carotene 7,8-desaturase; Flags: Precursor gi|2924363|emb|CAA12062.1| zeta-carotene desaturase [Narcissus pseudonarcissus]

 Score =  158 bits (400), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 77  MSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 136

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           ADENLL+KDHTH FVN+GGEIG
Sbjct: 137 ADENLLVKDHTHTFVNRGGEIG 158

Source: Narcissus pseudonarcissus

Species: Narcissus pseudonarcissus

Genus: Narcissus

Family: Amaryllidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83637848|gb|ABC33728.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE RSFIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 73  MSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 132

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD+NLL+KDHTH FVN+GGEIG
Sbjct: 133 ADKNLLVKDHTHTFVNQGGEIG 154

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18073986|emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE RSFIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 73  MSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 132

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD+NLL+KDHTH FVN+GGEIG
Sbjct: 133 ADKNLLVKDHTHTFVNQGGEIG 154

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15824043|dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  158 bits (399), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 76/82 (92%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE RSFIGGKV SFV KRGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 73  MSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVG 132

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           AD+NLL+KDHTH FVN+GGEIG
Sbjct: 133 ADKNLLVKDHTHTFVNQGGEIG 154

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:2114789	558	ZDS "zeta-carotene desaturase"	0.942	0.146	0.804	1.8e-32
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.919	0.141	0.378	9.5e-09

TAIR|locus:2114789 ZDS "zeta-carotene desaturase" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 66/82 (80%), Positives = 74/82 (90%)

Query:     1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
             MSTAVELLDQGHEVDIY+ R+FIGGKV SFV +RGNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct:    69 MSTAVELLDQGHEVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVG 128

Query:    61 ADENLLMKDHTHKFVNKGGEIG 82
             A++NLL+KDHTH F+NK G IG
Sbjct:   129 AEKNLLVKDHTHTFINKDGTIG 150

GO:0005739 "mitochondrion" evidence=ISM

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016719 "carotene 7,8-desaturase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016120 "carotene biosynthetic process" evidence=IDA

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 31/82 (37%), Positives = 49/82 (59%)

Query:     1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
             +STA  L D GH+  + E R  +GGK+A++  + G+  E  LH+FFG Y N+  L  ++G
Sbjct:   105 LSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 164

Query:    61 ADENLLMKDHTHKFV--NKGGE 80
              ++ L  K+H+  F   +K GE
Sbjct:   165 INDRLQWKEHSMIFAMPSKPGE 186


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.142   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.43    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  99 KB (2071 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.77u 0.23s 9.00t   Elapsed:  00:00:01
  Total cpu time:  8.77u 0.23s 9.00t   Elapsed:  00:00:01
  Start:  Thu May  9 23:15:26 2013   End:  Thu May  9 23:15:27 2013

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q38893	ZDS_ARATH	1, ., 3, ., 5, ., 6	0.8048	0.9425	0.1469	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031131001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (583 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027139001	SubName- Full=Chromosome chr8 scaffold_41, whole genome shotgun sequence; (569 aa)			•			•	•		0.980
	GSVIVG00016526001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (529 aa)				•		•	•		0.939
	GSVIVG00025310001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (504 aa)				•		•	•		0.938
	PDS1	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (582 aa)			•			•	•	•	0.917
	GSVIVG00025926001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (583 aa)				•		•			0.903
	GSVIVG00033552001	SubName- Full=Chromosome chr5 scaffold_67, whole genome shotgun sequence; (307 aa)	•		•				•		0.611
	GSVIVG00018857001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (396 aa)	•	•	•	•			•		0.537
	GSVIVG00024765001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (389 aa)	•	•	•				•		0.524
	GSVIVG00028499001	RecName- Full=Photosystem II reaction center psb28 protein; (179 aa)			•	•			•		0.506
	GSVIVG00016085001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (471 aa)				•			•		0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	1e-55
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	3e-47
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	5e-27
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	5e-15
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	2e-13
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	1e-12
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	1e-06
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	3e-06
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	1e-04
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	0.004

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  179 bits (456), Expect = 1e-55
 Identities = 70/82 (85%), Positives = 74/82 (90%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           MSTAVELLDQGHEVDIYE R FIGGKV SFV K GNHIE+ LHVFFGCYNNLFRL KKVG
Sbjct: 88  MSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVG 147

Query: 61  ADENLLMKDHTHKFVNKGGEIG 82
           ADENLL+KDHTH FVNKGG++G
Sbjct: 148 ADENLLVKDHTHTFVNKGGDVG 169

Length = 569

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score =  155 bits (394), Expect = 3e-47
 Identities = 63/82 (76%), Positives = 72/82 (87%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          +STAVEL+D GHEVDIYE RSFIGGKV S+V   GNHIE+ LHVFFGCY NLFRL KKVG
Sbjct: 12 LSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVG 71

Query: 61 ADENLLMKDHTHKFVNKGGEIG 82
          A++NLL+K+HTH FVNKGG+IG
Sbjct: 72 AEDNLLLKEHTHTFVNKGGDIG 93

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  101 bits (253), Expect = 5e-27
 Identities = 39/84 (46%), Positives = 54/84 (64%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++ A EL D G++V +YE R  +GGKVAS+    GNH+E  LHVFFGCY NL  L K++ 
Sbjct: 13 LAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELP 72

Query: 61 ADENLLMKDHTHKFVNKGGEIGGI 84
           ++ L +++HT  FV  G   G I
Sbjct: 73 IEDRLQLREHTKTFVGSGTRPGAI 96

Length = 485

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 68.0 bits (166), Expect = 5e-15
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++ A ELL  G +V + E R  +GG++ +     G  IE+    F G Y NL  L  ++G
Sbjct: 4  LAAARELLRAGFDVTVLEARDRVGGRIRTVR-FDGFLIELGAQWFHGAYPNLLNLLLELG 62

Query: 61 ADENLLMKDHTHKFVNKGGEIGG 83
           +  LL+         +    GG
Sbjct: 63 LELGLLLFPFPGDPFVRLKYRGG 85

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
           +STA  L D GH+  + E R  +GGKVA++  + G+  E  LH+FFG Y N+  L  ++G
Sbjct: 106 LSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELG 165

Query: 61  ADENLLMKDHTHKFV--NKGGE 80
            ++ L  K+H+  F   NK GE
Sbjct: 166 INDRLQWKEHSMIFAMPNKPGE 187

Length = 567

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 28/74 (37%), Positives = 43/74 (58%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          +S A  L D GH   + E R  +GGKVA++  + G+  E  LH+FFG Y N+ +L K++ 
Sbjct: 12 LSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELN 71

Query: 61 ADENLLMKDHTHKF 74
           ++ L  K H+  F
Sbjct: 72 IEDRLQWKSHSMIF 85

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 41.3 bits (98), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKV 59
          +  A  L  +G +V + E R  IGG   S     G   +   H+F   Y N+  L  ++
Sbjct: 9  LVAAYLLAKRGKDVLVLEKRDRIGGNAYSER-DPGYRHDYGAHIFHTSYPNVRELLDEL 66

Length = 66

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 10 QGHEVDIYELRSFIGGKVASFVCKR-GNHIEISLHVFFGCYNNLFRLTKKVGADENLL 66
           G  V ++E R  +GG+  SF     G  I+   HV  G Y NL  L +++GA+  L 
Sbjct: 1  AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQ 58

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 37.9 bits (89), Expect = 1e-04
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 2  STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGA 61
          + A  L  +GHEV ++E    +GG  ASF    G  IE   H  F     L  L  ++G 
Sbjct: 13 AAAYRLAKRGHEVTVFEADDQLGGLAASF-EFGGLPIERFYHHIFKSDEALLELLDELGL 71

Query: 62 DENLLMK 68
          ++ L  +
Sbjct: 72 EDKLRWR 78

Length = 434

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFF 46
          ++ A ELL +G+ V + E    +GG ++  V  +GN  +I  H FF
Sbjct: 17 LTAAYELLKRGYPVTVLEADPVVGG-ISRTVTYKGNRFDIGGHRFF 61

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
COG3349	485	Uncharacterized conserved protein [Function unknow	99.79
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.66
PLN02612	567	phytoene desaturase	99.63
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.63
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.63
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.63
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.63
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.62
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.62
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.62
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.61
PLN02487	569	zeta-carotene desaturase	99.59
PRK07233	434	hypothetical protein; Provisional	99.57
PLN02576	496	protoporphyrinogen oxidase	99.53
PRK07208	479	hypothetical protein; Provisional	99.48
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.48
PLN02268	435	probable polyamine oxidase	99.45
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.4
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.35
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.28
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.25
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.21
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.19
PLN02568	539	polyamine oxidase	99.15
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.1
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.08
PLN03000	881	amine oxidase	99.02
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.01
PLN02529	738	lysine-specific histone demethylase 1	99.0
PLN02676	487	polyamine oxidase	98.98
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.87
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.82
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.79
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.7
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.42
PLN02976	1713	amine oxidase	98.39
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.76
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.33
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.31
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.24
PRK06184	502	hypothetical protein; Provisional	97.19
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.18
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.18
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.17
PRK06753	373	hypothetical protein; Provisional	97.17
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.15
PRK08163	396	salicylate hydroxylase; Provisional	97.1
PRK07588	391	hypothetical protein; Provisional	97.02
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.02
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.95
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.93
PLN02985	514	squalene monooxygenase	96.92
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.91
PRK07236	386	hypothetical protein; Provisional	96.86
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	96.84
PRK09126	392	hypothetical protein; Provisional	96.83
PRK12831	464	putative oxidoreductase; Provisional	96.81
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.79
PRK08244	493	hypothetical protein; Provisional	96.75
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.75
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.73
PRK05868	372	hypothetical protein; Validated	96.73
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	96.73
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	96.73
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.71
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	96.68
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.67
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	96.65
PRK06847	375	hypothetical protein; Provisional	96.64
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.63
PRK07538	413	hypothetical protein; Provisional	96.63
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.63
PRK07045	388	putative monooxygenase; Reviewed	96.62
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	96.61
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.61
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	96.61
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.6
PLN02852	491	ferredoxin-NADP+ reductase	96.6
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	96.59
PRK06126	545	hypothetical protein; Provisional	96.59
PRK08013	400	oxidoreductase; Provisional	96.58
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.53
PRK06475	400	salicylate hydroxylase; Provisional	96.53
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.52
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	96.52
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	96.5
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.5
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	96.5
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	96.47
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.42
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.36
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	96.35
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.34
PLN02661	357	Putative thiazole synthesis	96.32
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.31
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.27
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.24
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.24
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.19
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.17
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.15
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.14
PRK06834	488	hypothetical protein; Provisional	96.14
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.11
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	96.08
PRK10157	428	putative oxidoreductase FixC; Provisional	96.05
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.05
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.05
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	96.03
PRK06185	407	hypothetical protein; Provisional	96.02
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.98
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	95.98
PRK11728	393	hydroxyglutarate oxidase; Provisional	95.94
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.89
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.89
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.88
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.88
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.85
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.83
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	95.81
PTZ00188	506	adrenodoxin reductase; Provisional	95.8
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	95.77
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	95.72
PRK06116	450	glutathione reductase; Validated	95.71
PRK10015	429	oxidoreductase; Provisional	95.71
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	95.68
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	95.66
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.64
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	95.63
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	95.63
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.62
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.62
PRK14727	479	putative mercuric reductase; Provisional	95.62
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.57
PRK07121	492	hypothetical protein; Validated	95.56
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.52
PRK07190	487	hypothetical protein; Provisional	95.52
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	95.49
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	95.49
PRK13984	604	putative oxidoreductase; Provisional	95.45
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	95.34
PRK12842	574	putative succinate dehydrogenase; Reviewed	95.26
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.24
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	95.23
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	95.21
TIGR02053	463	MerA mercuric reductase. This model represents the	95.21
PRK06370	463	mercuric reductase; Validated	95.18
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.17
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.17
PTZ00367	567	squalene epoxidase; Provisional	95.17
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.16
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.14
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	95.07
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.03
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.03
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.03
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.0
PRK08294	634	phenol 2-monooxygenase; Provisional	94.97
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	94.93
PRK08274	466	tricarballylate dehydrogenase; Validated	94.88
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.88
PRK13748	561	putative mercuric reductase; Provisional	94.87
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.84
PRK12839	572	hypothetical protein; Provisional	94.82
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	94.75
PRK14694	468	putative mercuric reductase; Provisional	94.7
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	94.55
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	94.55
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.54
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	94.34
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	94.32
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	94.18
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	94.14
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	94.03
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	93.92
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	93.88
PTZ00052	499	thioredoxin reductase; Provisional	93.87
PRK10262	321	thioredoxin reductase; Provisional	93.78
PTZ00058	561	glutathione reductase; Provisional	93.68
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	93.65
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.49
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	93.47
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.44
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.37
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	93.34
PLN02507	499	glutathione reductase	93.3
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	93.25
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	93.15
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	93.09
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.06
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	93.06
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	92.93
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	92.86
PLN02464	627	glycerol-3-phosphate dehydrogenase	92.5
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	92.27
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	92.17
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	92.13
PRK07804	541	L-aspartate oxidase; Provisional	91.94
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	91.87
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	91.7
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	91.68
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	91.67
COG2081	408	Predicted flavoproteins [General function predicti	91.64
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	91.62
PLN02546	558	glutathione reductase	91.49
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.48
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	91.44
PRK05257	494	malate:quinone oxidoreductase; Validated	91.28
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	91.14
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	91.07
PRK11445	351	putative oxidoreductase; Provisional	91.0
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	90.9
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	90.87
COG3573	552	Predicted oxidoreductase [General function predict	90.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	90.55
PTZ00153	659	lipoamide dehydrogenase; Provisional	90.39
PRK06996	398	hypothetical protein; Provisional	90.3
PLN02463	447	lycopene beta cyclase	90.18
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	90.02
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	90.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	89.79
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	89.68
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	89.63
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	89.44
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	89.26
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	88.82
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	88.76
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	88.57
PLN02815	594	L-aspartate oxidase	88.56
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	88.15
COG0579	429	Predicted dehydrogenase [General function predicti	88.07
PTZ00383	497	malate:quinone oxidoreductase; Provisional	88.04
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	88.0
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	87.42
PRK08401	466	L-aspartate oxidase; Provisional	87.34
PRK06175	433	L-aspartate oxidase; Provisional	87.34
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	87.27
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	87.08
KOG2852	380	consensus Possible oxidoreductase [General functio	86.69
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	86.61
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	86.51
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	86.16
PRK07395	553	L-aspartate oxidase; Provisional	85.49
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	84.89
PRK13339	497	malate:quinone oxidoreductase; Reviewed	84.77
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	84.37
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	84.2
PRK08071	510	L-aspartate oxidase; Provisional	83.89
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	83.82
PF03853	169	YjeF_N: YjeF-related protein N-terminus; InterPro:	83.76
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	83.68
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	82.78
PRK02106	560	choline dehydrogenase; Validated	82.78
PRK08275	554	putative oxidoreductase; Provisional	82.47
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	82.12
cd08352	125	Glo_EDI_BRP_like_1 This conserved domain belongs t	82.08
PRK09077	536	L-aspartate oxidase; Provisional	81.78
PLN02697	529	lycopene epsilon cyclase	81.45
cd07265	122	2_3_CTD_N N-terminal domain of catechol 2,3-dioxyg	80.37

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.79  E-value=1.7e-19  Score=132.79  Aligned_cols=86  Identities=45%  Similarity=0.801  Sum_probs=77.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEcc---
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNK---   77 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~---   77 (87)
                      |+||++|+++|++|+|||+++++||+++||++.+|.+.|+|.|+|++.|+|+++++++++.++.+++......|...   
T Consensus        13 L~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~   92 (485)
T COG3349          13 LAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTR   92 (485)
T ss_pred             HHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999888877543   


Q ss_pred             CCeEEEEec
Q 034688           78 GGEIGGIVI   86 (87)
Q Consensus        78 ~g~~~~~~~   86 (87)
                      .|.+.+++.
T Consensus        93 ~g~~~~~~~  101 (485)
T COG3349          93 PGAIGRFAR  101 (485)
T ss_pred             CCccccccc
Confidence            555554443

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.66  E-value=3.6e-16  Score=113.50  Aligned_cols=86  Identities=35%  Similarity=0.588  Sum_probs=72.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEc--cC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVN--KG   78 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~--~~   78 (87)
                      |+||++|+++|++|+|||+++++||+++|+++.+|+.+|.|+|+++..++++.++++++|+.+.+.+......+..  .+
T Consensus        12 l~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~   91 (453)
T TIGR02731        12 LSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKP   91 (453)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCC
Confidence            6899999999999999999999999999987557899999999999999999999999999887777665555543  24


Q ss_pred             CeEEEEec
Q 034688           79 GEIGGIVI   86 (87)
Q Consensus        79 g~~~~~~~   86 (87)
                      ++...+++
T Consensus        92 ~~~~~~~~   99 (453)
T TIGR02731        92 GTFSRFDF   99 (453)
T ss_pred             cceeeccC
Confidence            55554443

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02612 phytoene desaturase

Probab=99.63  E-value=1.1e-15  Score=114.60  Aligned_cols=87  Identities=37%  Similarity=0.594  Sum_probs=74.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEc--cC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVN--KG   78 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~--~~   78 (87)
                      |+||++|+++|++|+|+|+++++||++.|+++.+|+++|.|+|++++.++++.++++++|+.+.+.+......+..  ..
T Consensus       106 l~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~  185 (567)
T PLN02612        106 LSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKP  185 (567)
T ss_pred             HHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCC
Confidence            6899999999999999999999999999998667999999999999999999999999999988888776665543  24


Q ss_pred             CeEEEEecC
Q 034688           79 GEIGGIVIS   87 (87)
Q Consensus        79 g~~~~~~~~   87 (87)
                      +++..+++|
T Consensus       186 ~~~~~~~~p  194 (567)
T PLN02612        186 GEFSRFDFP  194 (567)
T ss_pred             CceeeCcCc
Confidence            566655543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.63  E-value=7.3e-16  Score=110.91  Aligned_cols=67  Identities=25%  Similarity=0.437  Sum_probs=60.4

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK   68 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~   68 (87)
                      |+||+.|+++|  ++|+|||+++++||+++|.+ .+|+++|.|+|+|++.++++.++++++|+.+.....
T Consensus        13 L~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~   81 (451)
T PRK11883         13 LSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELVAN   81 (451)
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCccceecC
Confidence            68999999988  89999999999999999987 468999999999999999999999999998654443

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.63  E-value=9.6e-16  Score=111.09  Aligned_cols=66  Identities=23%  Similarity=0.295  Sum_probs=60.8

Q ss_pred             ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceee
Q 034688            1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLM   67 (87)
Q Consensus         1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~   67 (87)
                      |+||++|+++    |++|+|||+++++||+++|.. .+|+++|.|+|+|+..++++.++++++|++..+.+
T Consensus        15 L~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~~~~   84 (462)
T TIGR00562        15 LCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEHVLVS   84 (462)
T ss_pred             HHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCccccc
Confidence            6899999998    999999999999999999986 56899999999999999999999999999876554

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.63  E-value=7.6e-16  Score=112.99  Aligned_cols=85  Identities=25%  Similarity=0.420  Sum_probs=77.3

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccC
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~   78 (87)
                      |+|||+|++++  .+|+|||+++++||.++|++ .+|+.+|.|+|.|....+.+.++++++|+++.+.|+....-|+..+
T Consensus        13 LsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~~   91 (444)
T COG1232          13 LSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYYD   91 (444)
T ss_pred             HHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhccCCcccceEeeC
Confidence            79999999999  99999999999999999996 6799999999999988788999999999999999887666688889


Q ss_pred             CeEEEEec
Q 034688           79 GEIGGIVI   86 (87)
Q Consensus        79 g~~~~~~~   86 (87)
                      |++..+..
T Consensus        92 gkl~p~P~   99 (444)
T COG1232          92 GKLHPIPT   99 (444)
T ss_pred             CcEEECCc
Confidence            99887654

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.63  E-value=1.5e-15  Score=107.82  Aligned_cols=65  Identities=38%  Similarity=0.663  Sum_probs=58.5

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-CeEEeeeeEEEeCCChHHHHHHHHcCCCCcee
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVASFVCKR-GNHIEISLHVFFGCYNNLFRLTKKVGADENLL   66 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~   66 (87)
                      +||++|+++|++|+|||+++++||+++|+...+ ++++|.|+|++++.++++.++++++|++..+.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~   66 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQ   66 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhh
Confidence            699999999999999999999999999987432 45699999999999999999999999987655

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.62  E-value=1.8e-15  Score=111.36  Aligned_cols=82  Identities=77%  Similarity=1.273  Sum_probs=71.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE   80 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~   80 (87)
                      |+||+.|+++|++|+|||+++++||+++|+.+.+|+.+|.|+|+|++.++++.++++++|+.+.+.+......+...+++
T Consensus        12 l~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~   91 (474)
T TIGR02732        12 LSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVNKGGD   91 (474)
T ss_pred             HHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccccccceeEEEcCCCc
Confidence            68999999999999999999999999999876679999999999999999999999999999877766655556555666


Q ss_pred             EE
Q 034688           81 IG   82 (87)
Q Consensus        81 ~~   82 (87)
                      ..
T Consensus        92 ~~   93 (474)
T TIGR02732        92 IG   93 (474)
T ss_pred             cc
Confidence            54

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.62  E-value=1.1e-15  Score=111.29  Aligned_cols=80  Identities=15%  Similarity=0.280  Sum_probs=65.3

Q ss_pred             ChhHHHHhhC------CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeE
Q 034688            1 MSTAVELLDQ------GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKF   74 (87)
Q Consensus         1 L~aA~~L~~~------G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~   74 (87)
                      |+||++|+++      |++|+|||+++++||+++|.+ .+|+++|.|+|+++..++++.++++++|+++.+.+......+
T Consensus        14 L~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~   92 (463)
T PRK12416         14 LSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLEEEMVYNETGISY   92 (463)
T ss_pred             HHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCccceecCCCCceE
Confidence            6899999986      489999999999999999987 468999999999999999999999999998776555432333


Q ss_pred             EccCCeE
Q 034688           75 VNKGGEI   81 (87)
Q Consensus        75 ~~~~g~~   81 (87)
                      .+.++++
T Consensus        93 ~~~~~~~   99 (463)
T PRK12416         93 IYSDNTL   99 (463)
T ss_pred             EEECCeE
Confidence            3334444

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.62  E-value=1.6e-15  Score=106.00  Aligned_cols=65  Identities=31%  Similarity=0.590  Sum_probs=57.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-CeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-GNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||++|+++|++|+|||+++++|||++|++... |+.+|.|+++|+..++++..+++++++...+
T Consensus         4 L~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~   69 (450)
T PF01593_consen    4 LAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSL   69 (450)
T ss_dssp             HHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTE
T ss_pred             HHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccc
Confidence            6899999999999999999999999999998664 8999999999999999999999999986443

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.61  E-value=9.2e-16  Score=86.74  Aligned_cols=58  Identities=33%  Similarity=0.607  Sum_probs=52.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC--CChHHHHHHHHc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG--CYNNLFRLTKKV   59 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~l   59 (87)
                      |+||+.|+++|++|+|||+++++||++++++. +|+.+|.|+|+|..  .++++.+++++|
T Consensus         9 l~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen    9 LAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             HHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            68999999999999999999999999999875 67999999999987  578899999875

...

>PLN02487 zeta-carotene desaturase

Probab=99.59  E-value=8.4e-15  Score=110.21  Aligned_cols=85  Identities=82%  Similarity=1.303  Sum_probs=73.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE   80 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~   80 (87)
                      |+||+.|+++|++|+|||+++++||+++++++.+|+.+|.|+|++++.++++.++++++|+.+.+.+......|...+|+
T Consensus        88 l~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~  167 (569)
T PLN02487         88 MSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVNKGGD  167 (569)
T ss_pred             HHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccccccceeEEecCCE
Confidence            68999999999999999999999999999976679999999999999999999999999999887766655556566777


Q ss_pred             EEEEe
Q 034688           81 IGGIV   85 (87)
Q Consensus        81 ~~~~~   85 (87)
                      +..+.
T Consensus       168 ~~~~~  172 (569)
T PLN02487        168 VGELD  172 (569)
T ss_pred             Eeeec
Confidence            65443

>PRK07233 hypothetical protein; Provisional

Probab=99.57  E-value=4.7e-15  Score=106.01  Aligned_cols=76  Identities=28%  Similarity=0.464  Sum_probs=65.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEcc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNK   77 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~   77 (87)
                      |+||+.|+++|++|+|+|+++++||+++|++. +|+.+|.|.|+++..++++.++++++|+.+.+.+......+.+.
T Consensus        12 L~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~-~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~   87 (434)
T PRK07233         12 LAAAYRLAKRGHEVTVFEADDQLGGLAASFEF-GGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYVD   87 (434)
T ss_pred             HHHHHHHHHCCCcEEEEEeCCCCCCceeeecc-CCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccCceEEEEC
Confidence            68999999999999999999999999999874 58999999999999999999999999998776666544444333

>PLN02576 protoporphyrinogen oxidase

Probab=99.53  E-value=2.8e-14  Score=104.52  Aligned_cols=82  Identities=22%  Similarity=0.329  Sum_probs=67.7

Q ss_pred             ChhHHHHhhC-CCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCc-eeeEEccC
Q 034688            1 MSTAVELLDQ-GHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDH-THKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~-~~~~~~~~   78 (87)
                      |+||++|+++ |++|+|||+++++||+++|.+ .+|+++|.|+|+|+..++.+..++++ |+.+.+.+... ...+...+
T Consensus        25 L~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~~~~~~~~~~~~~~~  102 (496)
T PLN02576         25 LAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDLVFPDPQAPRYVVWN  102 (496)
T ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CChhheecCCCCceEEEEEC
Confidence            7899999999 999999999999999999987 46899999999999999889888888 88877665442 23444457


Q ss_pred             CeEEEE
Q 034688           79 GEIGGI   84 (87)
Q Consensus        79 g~~~~~   84 (87)
                      |++..+
T Consensus       103 g~~~~~  108 (496)
T PLN02576        103 GKLRPL  108 (496)
T ss_pred             CEEEEc
Confidence            776543

>PRK07208 hypothetical protein; Provisional

Probab=99.48  E-value=1.2e-13  Score=100.85  Aligned_cols=64  Identities=27%  Similarity=0.481  Sum_probs=58.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||+.|+++|++|+|+|+++++||+++|.. .+|+++|.|+|+++..++++.+++++++..+.+
T Consensus        17 L~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~   80 (479)
T PRK07208         17 LTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDF   80 (479)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCcc
Confidence            6899999999999999999999999999976 468999999999999999999999999974443

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=7.7e-14  Score=103.77  Aligned_cols=75  Identities=32%  Similarity=0.565  Sum_probs=63.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH-HHHHHHHcCCCCceeeeCceeeEEc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVGADENLLMKDHTHKFVN   76 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~l~~~~~~~~~~~   76 (87)
                      |+||..|.+.|++|+|||+++|+|||++|++...+.++|+|++++++.+.| +..+.+++|++.. .+......|..
T Consensus        28 LsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~~-~~~~~~~l~~~  103 (501)
T KOG0029|consen   28 LSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLELY-KVRDTCPLFNE  103 (501)
T ss_pred             HHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcccc-eeccccccccc
Confidence            689999999999999999999999999999977777899999999999886 6777799999874 33444444443

>PLN02268 probable polyamine oxidase

Probab=99.45  E-value=1.5e-13  Score=99.32  Aligned_cols=62  Identities=26%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC--ChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC--YNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~   63 (87)
                      |+||+.|.++|++|+|+|+++|+|||++|.+ .+|+.+|+|++|+++.  .+.+.++++++|++.
T Consensus        13 L~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~   76 (435)
T PLN02268         13 IAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPL   76 (435)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence            6899999999999999999999999999965 4689999999999863  334889999999964

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.40  E-value=1.9e-12  Score=95.21  Aligned_cols=60  Identities=23%  Similarity=0.274  Sum_probs=52.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGAD   62 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~   62 (87)
                      |+||..|+++|++|+|+|+++++||+++|++ .+|+.+|.|+|++... ..+.++++++|.+
T Consensus        11 L~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~   70 (502)
T TIGR02734        11 LALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRD   70 (502)
T ss_pred             HHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCC
Confidence            7899999999999999999999999999997 4799999999998743 3467788999853

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.35  E-value=4.4e-12  Score=93.18  Aligned_cols=78  Identities=19%  Similarity=0.219  Sum_probs=60.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC--ChHHHHHHHHcCCCCc-eeeeCceeeEEcc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC--YNNLFRLTKKVGADEN-LLMKDHTHKFVNK   77 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~lg~~~~-l~~~~~~~~~~~~   77 (87)
                      |+||..|+++|++|+|||+++++||+++|++. +|+.+|.|+|++...  ...+.++++++|+... +...++.......
T Consensus        14 L~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~d~~~~~~~~   92 (492)
T TIGR02733        14 LTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR-RGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAKILDPACAVDLP   92 (492)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCccceecc-CCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccccCCCCcEEEEC
Confidence            68999999999999999999999999999974 799999999998753  3346778899998732 2223333334444


Q ss_pred             CC
Q 034688           78 GG   79 (87)
Q Consensus        78 ~g   79 (87)
                      +|
T Consensus        93 dg   94 (492)
T TIGR02733        93 DG   94 (492)
T ss_pred             CC
Confidence            54

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.28  E-value=1.4e-11  Score=88.56  Aligned_cols=63  Identities=29%  Similarity=0.469  Sum_probs=56.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEe---ccCCeEEeeeeEEEeC-CChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFV---CKRGNHIEISLHVFFG-CYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~lg~~~~   64 (87)
                      |||||.|++. ++||+||+..++||+++|..   +.+|..+|.|.++... +|||+.++++++|.+..
T Consensus        21 LSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~t~   87 (447)
T COG2907          21 LSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVDTK   87 (447)
T ss_pred             hhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCCCc
Confidence            7899999776 89999999999999999985   4457789999999987 89999999999999864

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.25  E-value=1.5e-11  Score=89.92  Aligned_cols=83  Identities=20%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             ChhHHHHhhCCCcE--EEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCCh---HHHHHHHHcCCCCceeeeCcee---
Q 034688            1 MSTAVELLDQGHEV--DIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYN---NLFRLTKKVGADENLLMKDHTH---   72 (87)
Q Consensus         1 L~aA~~L~~~G~~V--~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lg~~~~l~~~~~~~---   72 (87)
                      |+|||+|++++-+|  +|||+++|+||+++|.+..+|+++|-|++.+-...+   +++++++++|+++.++..+.+.   
T Consensus        24 L~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paa  103 (491)
T KOG1276|consen   24 LCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAA  103 (491)
T ss_pred             HHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhh
Confidence            78999999998655  559999999999999655669999999999988776   7999999999998877765542   


Q ss_pred             --eEEccCCeEEE
Q 034688           73 --KFVNKGGEIGG   83 (87)
Q Consensus        73 --~~~~~~g~~~~   83 (87)
                        .|....|+++.
T Consensus       104 knr~l~~~~~L~~  116 (491)
T KOG1276|consen  104 KNRFLYVPGKLPT  116 (491)
T ss_pred             hheeeccCccccc
Confidence              44455665543

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.21  E-value=7.4e-11  Score=87.35  Aligned_cols=60  Identities=20%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcC-CCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG-ADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg-~~~   63 (87)
                      |+||..|+++|++|+||||++++||+++|.... |+.+|.|++++......  .++++++ +..
T Consensus        16 L~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-Gf~fd~G~~~~~~~~~~--~~~~~l~~l~~   76 (487)
T COG1233          16 LAAAALLARAGLKVTVLEKNDRVGGRARTFELD-GFRFDTGPSWYLMPDPG--PLFRELGNLDA   76 (487)
T ss_pred             HHHHHHHHhCCCEEEEEEecCCCCcceEEEecc-ceEeccCcceeecCchH--HHHHHhccCcc
Confidence            689999999999999999999999999998744 99999999888654432  5555555 443

>TIGR02730 carot_isom carotene isomerase

Probab=99.19  E-value=8.4e-11  Score=86.70  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=57.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC----ChH-HHHHHHHcCCCCceeeeCceeeEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC----YNN-LFRLTKKVGADENLLMKDHTHKFV   75 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~lg~~~~l~~~~~~~~~~   75 (87)
                      |+||..|+++|++|+|+||++.+||++++++ .+|+.+|.|+|++...    .++ +.+.++.++.............+.
T Consensus        13 l~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (493)
T TIGR02730        13 LVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPDPVQIHYH   91 (493)
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCCCccEEEE
Confidence            6899999999999999999999999999987 4799999999987642    334 566777777543333333223333


Q ss_pred             ccCC
Q 034688           76 NKGG   79 (87)
Q Consensus        76 ~~~g   79 (87)
                      ..+|
T Consensus        92 ~~~g   95 (493)
T TIGR02730        92 LPNG   95 (493)
T ss_pred             CCCC
Confidence            4444

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02568 polyamine oxidase

Probab=99.15  E-value=8.8e-11  Score=88.11  Aligned_cols=63  Identities=21%  Similarity=0.384  Sum_probs=55.3

Q ss_pred             ChhHHHHhhCC-----CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC-ChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQG-----HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC-YNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G-----~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg~~~~   64 (87)
                      |+||+.|++.|     ++|+|||+++++|||++|++. .|+.+|.|++++++. .+.+.++++++|+...
T Consensus        18 l~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~-~g~~~d~G~~~~~g~~~~~~~~l~~~~g~~~~   86 (539)
T PLN02568         18 LTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEF-GGERIEMGATWIHGIGGSPVYKIAQEAGSLES   86 (539)
T ss_pred             HHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEe-CCeEEecCCceeCCCCCCHHHHHHHHhCCccc
Confidence            68999999887     999999999999999999874 589999999999975 4458899999999543

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.10  E-value=2.2e-10  Score=84.54  Aligned_cols=59  Identities=31%  Similarity=0.499  Sum_probs=51.5

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC-ChHHHHHHHHcC
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC-YNNLFRLTKKVG   60 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lg   60 (87)
                      |+||.+|.++| .+|+|||+++|+|||++|..-.+| .+|+|++|+++. ...+.++.++.|
T Consensus        34 LaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~gNpVY~la~~~g   94 (498)
T KOG0685|consen   34 LAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEGNPVYELAKEYG   94 (498)
T ss_pred             HHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCCChHHHHHHHhC
Confidence            68999998765 599999999999999999876655 899999999994 444999999998

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.08  E-value=3.1e-10  Score=83.35  Aligned_cols=67  Identities=22%  Similarity=0.331  Sum_probs=60.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK   68 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~   68 (87)
                      |+||++|.++||+|+|+|+++++|||+.+.+. .+-+.|.|.+++..+.+.++.+++++|+.......
T Consensus        20 L~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~fi~   86 (450)
T COG1231          20 LSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEPFIR   86 (450)
T ss_pred             HHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCceec
Confidence            68999999999999999999999999999985 78899999999988888899999999998654333

>PLN03000 amine oxidase

Probab=99.02  E-value=8.7e-10  Score=86.50  Aligned_cols=64  Identities=23%  Similarity=0.343  Sum_probs=55.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC---CeEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR---GNHIEISLHVFFGCYNN-LFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~   64 (87)
                      |+||+.|++.|++|+|+|+++++|||+.|.+..+   ++.+|+|++|+++...| +..+++++|+...
T Consensus       197 L~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~  264 (881)
T PLN03000        197 LAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLY  264 (881)
T ss_pred             HHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCcee
Confidence            5799999999999999999999999999987432   67899999999988766 4567899999753

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.01  E-value=5e-10  Score=78.45  Aligned_cols=62  Identities=21%  Similarity=0.328  Sum_probs=55.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+||+.|+.+|++|+||||+.-+|||+.|.+ .++-.+|+|+++|....+-++++++.+.-+.
T Consensus        14 l~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~g   75 (331)
T COG3380          14 LAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDG   75 (331)
T ss_pred             HHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCC
Confidence            5899999999999999999999999999976 5566799999999999888998888876554

>PLN02529 lysine-specific histone demethylase 1

Probab=99.00  E-value=1.2e-09  Score=84.57  Aligned_cols=64  Identities=27%  Similarity=0.332  Sum_probs=55.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-C--eEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-G--NHIEISLHVFFGCYNN-LFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~   64 (87)
                      |+||..|+++|++|+|||+++++||++.|..... |  ..+|+|++|+++...| +..+.+++|+...
T Consensus       173 l~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~  240 (738)
T PLN02529        173 LAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLH  240 (738)
T ss_pred             HHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCcc
Confidence            6899999999999999999999999999986431 3  4899999999987667 7889999998754

>PLN02676 polyamine oxidase

Probab=98.98  E-value=1.7e-09  Score=80.17  Aligned_cols=64  Identities=23%  Similarity=0.295  Sum_probs=55.0

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC----CChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG----CYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||++|+++|. +|+|+|+++++||++.+.. ..|..+|.|++|+..    ..+.+.++++++|+....
T Consensus        39 L~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~  107 (487)
T PLN02676         39 ISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFY  107 (487)
T ss_pred             HHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcCCceee
Confidence            689999999998 6999999999999999875 458999999999974    344588999999998653

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.87  E-value=4e-09  Score=82.39  Aligned_cols=64  Identities=28%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccC-C--eEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKR-G--NHIEISLHVFFGCYNN-LFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~   64 (87)
                      |+||+.|++.|++|+|+|+++++|||+.+....+ +  ..+|+|++++++...| +..+++++|+...
T Consensus       251 l~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~  318 (808)
T PLN02328        251 LVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLH  318 (808)
T ss_pred             HHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceE
Confidence            6899999999999999999999999999987443 2  3689999999886555 7789999998754

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.82  E-value=7.3e-09  Score=73.92  Aligned_cols=60  Identities=20%  Similarity=0.203  Sum_probs=52.4

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-CC-eEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVASFVCK-RG-NHIEISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-~g-~~~d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      ..|..|++.|++|.|+|+++++||.|.+..+. .| .++-.|||+|++++..+++++..+--
T Consensus        15 V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e   76 (374)
T COG0562          15 VIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTE   76 (374)
T ss_pred             HHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhh
Confidence            46888899999999999999999999998764 35 46899999999999999999987754

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.79  E-value=1.7e-08  Score=73.16  Aligned_cols=60  Identities=18%  Similarity=0.126  Sum_probs=51.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG   60 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg   60 (87)
                      |++|+.|++.|.+|+|+|+++++||.|.+....+....+.|+|+++...+.+.+++.++.
T Consensus        14 lsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~   73 (377)
T TIGR00031        14 IVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFF   73 (377)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhc
Confidence            579999999999999999999999999986543224469999999999889999988874

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.70  E-value=1.4e-08  Score=76.87  Aligned_cols=59  Identities=19%  Similarity=0.275  Sum_probs=51.1

Q ss_pred             ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEec-cCCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688            1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVC-KRGNHIEISLHVFFGCYNNLFRLTKKVG   60 (87)
Q Consensus         1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lg   60 (87)
                      ||||++|++.    |++|+|||+++.+||++.++.+ .+|++++.|+. +...+++++++++++.
T Consensus        35 LAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ip   98 (576)
T PRK13977         35 LAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSIP   98 (576)
T ss_pred             HHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhcc
Confidence            7899999985    6899999999999999998654 35899999977 5788899999998884

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.42  E-value=8e-07  Score=65.66  Aligned_cols=82  Identities=18%  Similarity=0.206  Sum_probs=65.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-------------------CCeEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-------------------RGNHIEISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      +.+|..|+++|++|+++|+++..||+.+|....                   ..+-+|+.++.++... .+.+++...++
T Consensus        17 ~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G-~lv~lL~~s~v   95 (443)
T PTZ00363         17 CILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG-ELVKILLHTDV   95 (443)
T ss_pred             HHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC-hHHHHHhhcCc
Confidence            467889999999999999999999999987210                   1345788899887774 67889999999


Q ss_pred             CCceeeeCceeeEEc-cCCeEEE
Q 034688           62 DENLLMKDHTHKFVN-KGGEIGG   83 (87)
Q Consensus        62 ~~~l~~~~~~~~~~~-~~g~~~~   83 (87)
                      ...+.+..-...+.+ .+|++..
T Consensus        96 ~ryleF~~l~g~~v~~~~g~~~~  118 (443)
T PTZ00363         96 TRYLEFKVIDGSYVYQKEGKIHK  118 (443)
T ss_pred             cceeeeEEeceEEEEecCCeEEE
Confidence            988888766666766 7777655

>PLN02976 amine oxidase

Probab=98.39  E-value=7.3e-07  Score=73.40  Aligned_cols=64  Identities=22%  Similarity=0.311  Sum_probs=52.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCC--------hHH-HHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY--------NNL-FRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~--------~~~-~~l~~~lg~~~~   64 (87)
                      |+||+.|+++|++|+|||+++++||++.+.+...|+.+|+|++++++..        ++. ..+++++|+...
T Consensus       706 LaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~qlGl~l~  778 (1713)
T PLN02976        706 LTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELT  778 (1713)
T ss_pred             HHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhcCCccc
Confidence            5789999999999999999999999999876445889999999998642        243 346899999863

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.76  E-value=2e-05  Score=54.19  Aligned_cols=54  Identities=19%  Similarity=0.263  Sum_probs=38.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+|||+|+++|++|+|||++..+||=+  |  .+|..+..    + .-.....++++++|+.-
T Consensus        43 LtAAyyLAk~g~kV~i~E~~ls~GGG~--w--~GGmlf~~----i-Vv~~~a~~iL~e~gI~y   96 (262)
T COG1635          43 LTAAYYLAKAGLKVAIFERKLSFGGGI--W--GGGMLFNK----I-VVREEADEILDEFGIRY   96 (262)
T ss_pred             HHHHHHHHhCCceEEEEEeecccCCcc--c--ccccccce----e-eecchHHHHHHHhCCcc
Confidence            789999999999999999999999944  1  11222111    1 12345777888888863

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.33  E-value=0.00019  Score=57.48  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=27.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|||+.+++||.++.
T Consensus       319 LsaA~~Lar~G~~VtVfE~~~~~GG~l~y  347 (944)
T PRK12779        319 LINAYLLAVEGFPVTVFEAFHDLGGVLRY  347 (944)
T ss_pred             HHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence            68999999999999999999999998753

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.31  E-value=0.0007  Score=48.65  Aligned_cols=49  Identities=22%  Similarity=0.220  Sum_probs=36.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|++.|++|+|+|+++..  .+             +.++..+   .++..++++++|+.+.+
T Consensus        15 l~~A~~L~~~G~~v~v~E~~~~~~~~~-------------~~~a~~l---~~~~~~~l~~lGl~~~l   65 (392)
T PRK08243         15 LLLGQLLHLAGIDSVVLERRSREYVEG-------------RIRAGVL---EQGTVDLLREAGVGERM   65 (392)
T ss_pred             HHHHHHHHhcCCCEEEEEcCCcccccc-------------ccceeEE---CHhHHHHHHHcCChHHH
Confidence            57999999999999999999852  11             1122222   36788999999997654

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.24  E-value=0.00015  Score=49.65  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+||++|+++|++|.|+|++..+||.+..    +|..+.   .+.  -.+....+++++|+.-
T Consensus        30 l~aA~~La~~g~kV~v~E~~~~~GGg~~~----Gg~lf~---~iV--Vq~~a~~iL~elgi~y   83 (230)
T PF01946_consen   30 LTAAYYLAKAGLKVAVIERKLSPGGGMWG----GGMLFN---KIV--VQEEADEILDELGIPY   83 (230)
T ss_dssp             HHHHHHHHHHTS-EEEEESSSS-BTTTTS-----CTT------EE--EETTTHHHHHHHT---
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCccccc----cccccc---hhh--hhhhHHHHHHhCCcee
Confidence            68999999999999999999999996521    122222   111  1123556778887753

>PRK06184 hypothetical protein; Provisional

Probab=97.19  E-value=0.0011  Score=49.27  Aligned_cols=49  Identities=14%  Similarity=0.120  Sum_probs=35.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++.+.-..+      +.       .+   .++.+++++++|+.+.+
T Consensus        16 l~~A~~La~~Gi~v~viE~~~~~~~~~r------a~-------~l---~~~~~e~l~~lGl~~~l   64 (502)
T PRK06184         16 LTLAIELARRGVSFRLIEKAPEPFPGSR------GK-------GI---QPRTQEVFDDLGVLDRV   64 (502)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCcCcc------ce-------ee---cHHHHHHHHHcCcHHHH
Confidence            6899999999999999999886632110      00       01   37889999999986543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.18  E-value=0.00056  Score=48.30  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=36.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|+.|+++|++|+|||+++.++-+..      ++  +....   .-.++..++++++|+.+.+
T Consensus        12 l~~A~~L~~~G~~v~v~Er~~~~~~~~~------~~--~~~~~---~l~~~~~~~l~~lGl~~~~   65 (385)
T TIGR01988        12 LALALALARSGLKIALIEATPAEAAATP------GF--DNRVS---ALSAASIRLLEKLGVWDKI   65 (385)
T ss_pred             HHHHHHHhcCCCEEEEEeCCCccccCCC------CC--Cccee---ecCHHHHHHHHHCCchhhh
Confidence            5899999999999999999987652110      00  10011   1236778889999986554

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.18  E-value=0.00034  Score=52.15  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=27.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|||+.+.+||++..
T Consensus       136 l~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         136 LAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             hhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            68999999999999999999999999865

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.17  E-value=0.00059  Score=48.98  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++.+.-.      ..|..+        .-.++..++++++|+.+.+
T Consensus        31 l~~A~~L~~~G~~v~v~E~~~~~~~~------~~g~~~--------~l~~~~~~~L~~lGl~~~l   81 (415)
T PRK07364         31 LTLAAALKDSGLRIALIEAQPAEAAA------AKGQAY--------ALSLLSARIFEGIGVWEKI   81 (415)
T ss_pred             HHHHHHHhcCCCEEEEEecCCccccC------CCCcEE--------EechHHHHHHHHCChhhhh
Confidence            58999999999999999999875310      001000        1125677888888886543

>PRK06753 hypothetical protein; Provisional

Probab=97.17  E-value=0.00098  Score=47.22  Aligned_cols=48  Identities=23%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|||+++.+.-.        |.    |.    .-.++.++.++++|+.+.
T Consensus        13 l~~A~~L~~~g~~v~v~E~~~~~~~~--------g~----gi----~l~~~~~~~L~~~gl~~~   60 (373)
T PRK06753         13 LTAAALLQEQGHEVKVFEKNESVKEV--------GA----GI----GIGDNVIKKLGNHDLAKG   60 (373)
T ss_pred             HHHHHHHHhCCCcEEEEecCCccccc--------cc----ce----eeChHHHHHHHhcChHHH
Confidence            58999999999999999999876421        11    11    113677888888887543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.15  E-value=0.0017  Score=46.80  Aligned_cols=51  Identities=22%  Similarity=0.113  Sum_probs=36.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++..--       .    -+.|+..+   .++.+++++++|+.+.+
T Consensus        15 l~~A~~L~~~G~~v~viE~~~~~~~-------~----~~~~a~~l---~~~~~~~L~~lGl~~~l   65 (390)
T TIGR02360        15 LLLGQLLHKAGIDNVILERQSRDYV-------L----GRIRAGVL---EQGTVDLLREAGVDERM   65 (390)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCccc-------C----CceeEeeE---CHHHHHHHHHCCChHHH
Confidence            5899999999999999999985210       0    02233322   36788999999987654

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.10  E-value=0.0019  Score=46.10  Aligned_cols=48  Identities=27%  Similarity=0.373  Sum_probs=35.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|||+++.++-.        |.    |.    .-.++..++++++|+.+.
T Consensus        17 l~~A~~L~~~g~~v~v~Er~~~~~~~--------g~----gi----~l~~~~~~~l~~lg~~~~   64 (396)
T PRK08163         17 LAAALALARQGIKVKLLEQAAEIGEI--------GA----GI----QLGPNAFSALDALGVGEA   64 (396)
T ss_pred             HHHHHHHHhCCCcEEEEeeCcccccc--------cc----ee----eeCchHHHHHHHcCChHH
Confidence            58999999999999999999865421        11    11    123678889999998654

>PRK07588 hypothetical protein; Provisional

Probab=97.02  E-value=0.0013  Score=47.02  Aligned_cols=48  Identities=19%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|+|+++...        ..|..+        .-.++.+++++++|+.+.
T Consensus        13 l~~A~~L~~~G~~v~v~E~~~~~~--------~~g~~~--------~l~~~~~~~l~~lGl~~~   60 (391)
T PRK07588         13 PTLAYWLRRYGHEPTLIERAPELR--------TGGYMV--------DFWGVGYEVAKRMGITDQ   60 (391)
T ss_pred             HHHHHHHHHCCCceEEEeCCCCcc--------CCCeEE--------eccCcHHHHHHHcCCHHH
Confidence            589999999999999999986531        112111        112455678888887543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.02  E-value=0.0027  Score=47.66  Aligned_cols=48  Identities=15%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|++.|++|+|+|+++.+....+..                .-.++.+++++++|+.+.
T Consensus        36 l~lA~~L~~~G~~v~viE~~~~~~~~~ra~----------------~l~~~~~~~l~~lGl~~~   83 (547)
T PRK08132         36 LALAIDLAQQGVPVVLLDDDDTLSTGSRAI----------------CFAKRSLEIFDRLGCGER   83 (547)
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCCCCeEE----------------EEcHHHHHHHHHcCCcHH
Confidence            589999999999999999998653211111                112567888999998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.95  E-value=0.00072  Score=50.25  Aligned_cols=28  Identities=32%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.+|+++|++|+|||+++.+||...
T Consensus        23 L~aA~~l~~~G~~v~vfE~~~~vGG~W~   50 (461)
T PLN02172         23 LVAARELRREGHTVVVFEREKQVGGLWV   50 (461)
T ss_pred             HHHHHHHHhcCCeEEEEecCCCCcceee
Confidence            6899999999999999999999999874

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.93  E-value=0.00073  Score=54.61  Aligned_cols=30  Identities=30%  Similarity=0.468  Sum_probs=27.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASF   30 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   30 (87)
                      |+||+.|++.|++|+|||+++.+||.++..
T Consensus       550 LSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~  579 (1012)
T TIGR03315       550 LSAGYFLARAGHPVTVFEKKEKPGGVVKNI  579 (1012)
T ss_pred             HHHHHHHHHCCCeEEEEecccccCceeeec
Confidence            689999999999999999999999998643

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PLN02985 squalene monooxygenase

Probab=96.92  E-value=0.003  Score=47.57  Aligned_cols=49  Identities=16%  Similarity=0.085  Sum_probs=34.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+....+.          .  |    ..-.++-.+.++++|+.+.+
T Consensus        56 lalA~aLa~~G~~V~vlEr~~~~~~~~----------~--g----~~L~p~g~~~L~~LGl~d~l  104 (514)
T PLN02985         56 SALAYALAKDGRRVHVIERDLREPERM----------M--G----EFMQPGGRFMLSKLGLEDCL  104 (514)
T ss_pred             HHHHHHHHHcCCeEEEEECcCCCCccc----------c--c----cccCchHHHHHHHcCCcchh
Confidence            578999999999999999975422110          0  1    01235678899999987654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.91  E-value=0.0011  Score=47.90  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=34.5

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++| ++|+|||+++.++..        |.-+.        -.+|..+.++++|+.+.
T Consensus        13 la~A~~L~~~g~~~v~v~Er~~~~~~~--------G~gi~--------l~~~~~~~L~~lg~~~~   61 (414)
T TIGR03219        13 VALALNLCKHSHLNVQLFEAAPAFGEV--------GAGVS--------FGANAVRAIVGLGLGEA   61 (414)
T ss_pred             HHHHHHHHhcCCCCEEEEecCCcCCCC--------cccee--------eCccHHHHHHHcCChhH
Confidence            68999999998 599999998876531        11111        13678888888888643

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07236 hypothetical protein; Provisional

Probab=96.86  E-value=0.0058  Score=43.77  Aligned_cols=49  Identities=22%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|||+++..-      . ..|.    |..    -.++..++++++|+.+.
T Consensus        19 l~~A~~L~~~G~~v~v~E~~~~~~------~-~~g~----gi~----l~~~~~~~l~~lg~~~~   67 (386)
T PRK07236         19 LFAALLLRRAGWDVDVFERSPTEL------D-GRGA----GIV----LQPELLRALAEAGVALP   67 (386)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCc------C-CCCc----eeE----eCHHHHHHHHHcCCCcc
Confidence            689999999999999999987531      0 1111    111    13789999999998754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=96.84  E-value=0.00091  Score=43.37  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCc-EEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHE-VDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~-V~v~E~~~~~GG~~~s   29 (87)
                      |++|..|.++|.+ |+|+|+++.+||....
T Consensus        10 l~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~   39 (203)
T PF13738_consen   10 LAAAAHLLERGIDPVVVLERNDRPGGVWRR   39 (203)
T ss_dssp             HHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence            5899999999999 9999999999998764

...

>PRK09126 hypothetical protein; Provisional

Probab=96.83  E-value=0.0015  Score=46.51  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=35.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++.+.-.  +.. ..      |..  ..-.++..++++++|+.+.+
T Consensus        16 l~~A~~L~~~G~~v~v~E~~~~~~~~--~~~-~~------g~~--i~l~~~~~~~L~~lGl~~~~   69 (392)
T PRK09126         16 LSFARSLAGSGLKVTLIERQPLAALA--DPA-FD------GRE--IALTHASREILQRLGAWDRI   69 (392)
T ss_pred             HHHHHHHHhCCCcEEEEeCCCccccc--CCC-Cc------hhH--HHhhHHHHHHHHHCCChhhh
Confidence            58999999999999999999875310  000 00      110  01236788899999986543

>PRK12831 putative oxidoreductase; Provisional

Probab=96.81  E-value=0.0012  Score=49.06  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=26.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+.+.+||.+.
T Consensus       153 l~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        153 LTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            6899999999999999999999999885

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.79  E-value=0.0013  Score=45.34  Aligned_cols=48  Identities=23%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |+||..|+++|++|+|+|+++.+--..+            | ..+   .++.+++++++|+.+.
T Consensus        14 l~~A~~L~~~G~~v~i~E~~~~~~~~~~------------~-~~l---~~~~~~~l~~lgl~~~   61 (356)
T PF01494_consen   14 LAAALALARAGIDVTIIERRPDPRPKGR------------G-IGL---SPNSLRILQRLGLLDE   61 (356)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSSCCCSSS------------S-EEE---EHHHHHHHHHTTEHHH
T ss_pred             HHHHHHHHhcccccccchhccccccccc------------c-ccc---ccccccccccccchhh
Confidence            5899999999999999999887643211            1 111   2678889999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08244 hypothetical protein; Provisional

Probab=96.75  E-value=0.0019  Score=47.76  Aligned_cols=46  Identities=17%  Similarity=0.019  Sum_probs=34.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC--ceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG--GKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G--G~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|++.|++|+|+|+++.+.  |+..                  .-.++.+++++++|+.+.
T Consensus        15 l~lA~~L~~~G~~v~viEr~~~~~~~~ra~------------------~l~~~~~e~l~~lGl~~~   62 (493)
T PRK08244         15 LMLASELALAGVKTCVIERLKETVPYSKAL------------------TLHPRTLEILDMRGLLER   62 (493)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCCccee------------------EecHHHHHHHHhcCcHHH
Confidence            589999999999999999987642  2111                  123678888888888654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.75  E-value=0.0031  Score=45.17  Aligned_cols=55  Identities=20%  Similarity=0.241  Sum_probs=34.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++..     ++. ..+ ..+.+..   .-.++.+++++++|+.+.+
T Consensus        16 l~~A~~L~~~G~~v~l~E~~~~~-----~~~-~~~-~~~~r~~---~l~~~~~~~L~~lG~~~~~   70 (384)
T PRK08849         16 AATALGFAKQGRSVAVIEGGEPK-----AFE-PSQ-PMDIRVS---AISQTSVDLLESLGAWSSI   70 (384)
T ss_pred             HHHHHHHHhCCCcEEEEcCCCcc-----cCC-CCC-CCCccEE---EecHHHHHHHHHCCCchhh
Confidence            58999999999999999987521     000 000 0111111   1237888999999987654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.73  E-value=0.00098  Score=50.49  Aligned_cols=30  Identities=37%  Similarity=0.605  Sum_probs=27.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASF   30 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   30 (87)
                      |+||..|++.|++|.++|+++.+||++..+
T Consensus       137 itAAl~La~~G~~v~LVEKepsiGGrmak~  166 (622)
T COG1148         137 ITAALELADMGFKVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             HHHHHHHHHcCCeEEEEecCCcccccHHhh
Confidence            579999999999999999999999998664

>PRK05868 hypothetical protein; Validated

Probab=96.73  E-value=0.0018  Score=46.43  Aligned_cols=48  Identities=17%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|+|+++.+.-        .|..++        ..++.+++++++|+.+.
T Consensus        14 l~~A~~L~~~G~~v~viE~~~~~~~--------~g~~i~--------~~~~a~~~L~~lGl~~~   61 (372)
T PRK05868         14 TAAAYWLGRHGYSVTMVERHPGLRP--------GGQAID--------VRGPALDVLERMGLLAA   61 (372)
T ss_pred             HHHHHHHHhCCCCEEEEcCCCCCCC--------Cceeee--------eCchHHHHHHhcCCHHH
Confidence            5789999999999999999877531        121122        12566788899987643

>TIGR00292 thiazole biosynthesis enzyme

Probab=96.73  E-value=0.0012  Score=45.51  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=24.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+|+++.+||.+
T Consensus        34 L~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        34 LTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            589999999999999999999998764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=96.73  E-value=0.0026  Score=45.16  Aligned_cols=53  Identities=19%  Similarity=0.193  Sum_probs=34.4

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++| ++|+|+|+.+.+.-.  .     +  .+....   .-.++..+.++++|+.+.+
T Consensus        12 l~~A~~L~~~G~~~v~v~E~~~~~~~~--~-----~--~~~~~~---~l~~~~~~~l~~lgl~~~~   65 (382)
T TIGR01984        12 LSLALALSRLGKIKIALIEANSPSAAQ--P-----G--FDARSL---ALSYGSKQILEKLGLWPKL   65 (382)
T ss_pred             HHHHHHHhcCCCceEEEEeCCCccccC--C-----C--CCCeeE---eccHHHHHHHHHCCChhhh
Confidence            58999999999 999999998764311  0     0  000001   1125667888999886544

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.71  E-value=0.0072  Score=45.38  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=36.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|++.|++|+|+|+++.+....+.+                .-.++.+++++++|+.+.+
T Consensus        23 l~lA~~L~~~G~~v~v~Er~~~~~~~~ra~----------------~l~~~~~~~L~~lGl~~~l   71 (538)
T PRK06183         23 LTLANLLGQYGVRVLVLERWPTLYDLPRAV----------------GIDDEALRVLQAIGLADEV   71 (538)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCCCcee----------------eeCHHHHHHHHHcCChhHH
Confidence            578999999999999999998765322111                1136788999999987653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=96.68  E-value=0.005  Score=44.38  Aligned_cols=51  Identities=12%  Similarity=0.128  Sum_probs=34.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeC-CCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELR-SFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~-~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|++.|++|+|+|++ +..  +..      .     +  ... ..-.++..++++++|+.+.+
T Consensus        17 l~~A~~L~~~G~~v~viE~~~~~~~~~~~------~-----~--~r~-~~l~~~~~~~L~~lGl~~~l   70 (405)
T PRK08850         17 LALAAALKESDLRIAVIEGQLPEEALNEL------P-----D--VRV-SALSRSSEHILRNLGAWQGI   70 (405)
T ss_pred             HHHHHHHHhCCCEEEEEcCCCCcccccCC------C-----C--cce-ecccHHHHHHHHhCCchhhh
Confidence            58999999999999999986 221  110      0     0  000 11236899999999987654

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=96.67  E-value=0.0039  Score=44.63  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|+.|+++|++|+|+|+++.+.-..     . +    .+... ..-.++..++++++|+.+.+
T Consensus        19 l~~A~~La~~G~~v~liE~~~~~~~~~-----~-~----~~~r~-~~l~~~~~~~l~~lGl~~~~   72 (392)
T PRK08773         19 AACALALADAGLSVALVEGREPPRWQA-----D-Q----PDLRV-YAFAADNAALLDRLGVWPAV   72 (392)
T ss_pred             HHHHHHHhcCCCEEEEEeCCCCccccc-----C-C----CCCEE-EEecHHHHHHHHHCCchhhh
Confidence            589999999999999999987543110     0 0    01111 11236678889999987654

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=96.65  E-value=0.0068  Score=43.34  Aligned_cols=52  Identities=17%  Similarity=0.134  Sum_probs=33.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|++.|++|+|+|+.+......   . .     + +.  ...-.++..++++++|+.+.
T Consensus        14 l~~A~~L~~~G~~v~l~E~~~~~~~~~---~-~-----~-~r--~~~l~~~~~~~L~~lGl~~~   65 (374)
T PRK06617         14 MLTALSFAQKGIKTTIFESKSVKSPEF---F-K-----D-IR--TTALTPHSKNFLFSIDIWEE   65 (374)
T ss_pred             HHHHHHHHcCCCeEEEecCCCCCCCcc---C-c-----C-ce--EEEeCHHHHHHHHHCCcHHH
Confidence            589999999999999999875321100   0 0     1 10  01123678889999998543

>PRK06847 hypothetical protein; Provisional

Probab=96.64  E-value=0.0046  Score=43.78  Aligned_cols=47  Identities=23%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|++.|++|+|||+++.+...        |.    |.    .-.++..+.++++|+.+
T Consensus        17 l~~A~~L~~~g~~v~v~E~~~~~~~~--------g~----g~----~l~~~~~~~l~~~gl~~   63 (375)
T PRK06847         17 LSAAIALRRAGIAVDLVEIDPEWRVY--------GA----GI----TLQGNALRALRELGVLD   63 (375)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCccC--------Cc----ee----eecHHHHHHHHHcCCHH
Confidence            57999999999999999998764221        11    11    11256778888888754

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.63  E-value=0.0015  Score=52.69  Aligned_cols=29  Identities=28%  Similarity=0.579  Sum_probs=26.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||++|++.|++|+|||+.+.+||.++.
T Consensus       443 LsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        443 LAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            68999999999999999999999998754

>PRK07538 hypothetical protein; Provisional

Probab=96.63  E-value=0.002  Score=46.56  Aligned_cols=48  Identities=19%  Similarity=0.303  Sum_probs=34.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|||+++.+.-        .|    .|..    -.++.++.++++|+.+.
T Consensus        13 l~~A~~L~~~G~~v~v~E~~~~~~~--------~g----~gi~----l~p~~~~~L~~lgl~~~   60 (413)
T PRK07538         13 LTLALTLHQRGIEVVVFEAAPELRP--------LG----VGIN----LLPHAVRELAELGLLDA   60 (413)
T ss_pred             HHHHHHHHhCCCcEEEEEcCCcccc--------cC----ccee----eCchHHHHHHHCCCHHH
Confidence            5899999999999999999876431        01    1111    13677888888887654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.63  E-value=0.0018  Score=49.83  Aligned_cols=29  Identities=28%  Similarity=0.408  Sum_probs=26.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|++.|++|+|||+.+.+||.++.
T Consensus       340 LsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        340 LACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            68999999999999999999999998754

>PRK07045 putative monooxygenase; Reviewed

Probab=96.62  E-value=0.0044  Score=44.28  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=34.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||..|+++|++|+|+|+++.+-       ..      .|...   -.++..++++++|+.+.+
T Consensus        18 l~~A~~L~~~G~~v~v~E~~~~~~-------~~------~~~~~---l~~~~~~~L~~lGl~~~~   66 (388)
T PRK07045         18 VALAHLLGARGHSVTVVERAARNR-------AQ------NGADL---LKPSGIGVVRAMGLLDDV   66 (388)
T ss_pred             HHHHHHHHhcCCcEEEEeCCCccc-------CC------Ccccc---cCccHHHHHHHcCCHHHH
Confidence            589999999999999999998651       00      01111   235667788888886653

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=96.61  E-value=0.0015  Score=47.25  Aligned_cols=29  Identities=31%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||+.|+++|++|+|+|+++.+|-+..+
T Consensus        16 s~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644          16 SSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            47999999999999999999999997766

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.61  E-value=0.0014  Score=47.96  Aligned_cols=29  Identities=21%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..|++.|++|+|+|+.+.+||.|..
T Consensus        18 ~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249         18 EGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             HHHHHHHHhCCCEEEEEeccccccccccc
Confidence            57999999999999999999999998743

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=96.61  E-value=0.0017  Score=44.85  Aligned_cols=27  Identities=26%  Similarity=0.466  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++|++|+|+|+.+.+||.+
T Consensus        38 l~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         38 LTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            579999999999999999999999865

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.60  E-value=0.0016  Score=52.68  Aligned_cols=29  Identities=31%  Similarity=0.477  Sum_probs=27.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|+|+++.+||.++.
T Consensus       552 LsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        552 LAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             HHHHHHHHHcCCeEEEEecccccCcceee
Confidence            68999999999999999999999998865

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.60  E-value=0.002  Score=48.46  Aligned_cols=30  Identities=40%  Similarity=0.266  Sum_probs=26.8

Q ss_pred             ChhHHHHhh--CCCcEEEEeeCCCcCceEEEE
Q 034688            1 MSTAVELLD--QGHEVDIYELRSFIGGKVASF   30 (87)
Q Consensus         1 L~aA~~L~~--~G~~V~v~E~~~~~GG~~~s~   30 (87)
                      |+||+.|++  .|++|+|||+.+.+||.++.-
T Consensus        39 l~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~g   70 (491)
T PLN02852         39 FYTADKLLKAHDGARVDIIERLPTPFGLVRSG   70 (491)
T ss_pred             HHHHHHHHhhCCCCeEEEEecCCCCcceEeec
Confidence            579999987  799999999999999988753

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=96.59  E-value=0.0036  Score=44.98  Aligned_cols=57  Identities=14%  Similarity=0.088  Sum_probs=36.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|+.|+++|++|+|+|+++...+....    .......+.    .-.++..++++++|+.+.+
T Consensus        15 l~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~----~l~~~~~~~L~~lGl~~~l   71 (405)
T PRK05714         15 SALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS----ALSAASQRILERLGAWDGI   71 (405)
T ss_pred             HHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch----hhhHHHHHHHHHCChhhhh
Confidence            58999999999999999998753321110    000000111    2347889999999986654

>PRK06126 hypothetical protein; Provisional

Probab=96.59  E-value=0.0031  Score=47.21  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=34.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++.+.-        .+.     +   ..-.++.+++++++|+.+.+
T Consensus        20 L~~Al~La~~G~~v~viEr~~~~~~--------~~r-----a---~~l~~r~~e~L~~lGl~~~l   68 (545)
T PRK06126         20 LALALDLGRRGVDSILVERKDGTAF--------NPK-----A---NTTSARSMEHFRRLGIADEV   68 (545)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCC--------CCc-----c---ccCCHHHHHHHHhcChHHHH
Confidence            6899999999999999998864321        010     0   12346788899999986543

>PRK08013 oxidoreductase; Provisional

Probab=96.58  E-value=0.0039  Score=44.94  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++.+.-..       |...+.-..   .-.++.+++++++|+.+.+
T Consensus        16 l~~A~~La~~G~~v~viE~~~~~~~~~-------g~~~~~r~~---~l~~~s~~~L~~lGl~~~~   70 (400)
T PRK08013         16 LAVACGLQGSGLRVAVLEQRVPEPLAA-------DAPPALRVS---AINAASEKLLTRLGVWQDI   70 (400)
T ss_pred             HHHHHHHhhCCCEEEEEeCCCCccccc-------CCCCCceee---ecchhHHHHHHHcCCchhh
Confidence            579999999999999999988643100       111111111   1246788899999987654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.53  E-value=0.002  Score=46.42  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +++|++|+++|++|+|+||++.+|
T Consensus        14 ~~~A~~La~~g~~V~vle~~~~~~   37 (410)
T PRK12409         14 VTTAYALAQRGYQVTVFDRHRYAA   37 (410)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCC
Confidence            579999999999999999998654

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.53  E-value=0.0029  Score=45.58  Aligned_cols=49  Identities=29%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+.+.-        .|.    |.    .-.++..++++++|+.+.+
T Consensus        15 l~~A~~L~~~G~~V~i~E~~~~~~~--------~g~----gi----~l~~~~~~~L~~~Gl~~~l   63 (400)
T PRK06475         15 LSAALELAARGWAVTIIEKAQELSE--------VGA----GL----QLAPNAMRHLERLGVADRL   63 (400)
T ss_pred             HHHHHHHHhCCCcEEEEecCCccCc--------CCc----cc----eeChhHHHHHHHCCChHHH
Confidence            5899999999999999999875431        111    11    1136888999999986554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.52  E-value=0.0023  Score=49.18  Aligned_cols=29  Identities=28%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|++.|++|+|||+.+.+||..+.
T Consensus       323 l~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        323 LGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            68999999999999999999999998753

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.52  E-value=0.0019  Score=48.13  Aligned_cols=29  Identities=41%  Similarity=0.578  Sum_probs=26.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|.++|++|+||||++.+||.-.-
T Consensus        19 L~~ar~l~~~g~~v~vfEr~~~iGGlW~y   47 (448)
T KOG1399|consen   19 LAAARELLREGHEVVVFERTDDIGGLWKY   47 (448)
T ss_pred             HHHHHHHHHCCCCceEEEecCCccceEee
Confidence            78999999999999999999999997643

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=96.50  E-value=0.002  Score=44.45  Aligned_cols=24  Identities=46%  Similarity=0.588  Sum_probs=21.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|++|++.|++|+|+|+. .+++
T Consensus        12 ~~~A~~La~~G~~V~l~e~~-~~~~   35 (358)
T PF01266_consen   12 LSTAYELARRGHSVTLLERG-DIGS   35 (358)
T ss_dssp             HHHHHHHHHTTSEEEEEESS-STTS
T ss_pred             HHHHHHHHHCCCeEEEEeec-cccc
Confidence            57999999999999999999 5544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.50  E-value=0.0026  Score=46.89  Aligned_cols=28  Identities=36%  Similarity=0.542  Sum_probs=26.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||.+.
T Consensus       146 l~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       146 LACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            5899999999999999999999999774

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=96.50  E-value=0.012  Score=42.33  Aligned_cols=45  Identities=22%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      |++|..|+++|++|+|+|+++ ..-.        .+        ....-.++.+++++++|+
T Consensus        15 l~lA~~L~~~G~~V~l~E~~~~~~~~--------~~--------r~~~l~~~~~~~L~~lG~   60 (387)
T COG0654          15 LALALALARAGLDVTLLERAPRELLE--------RG--------RGIALSPNALRALERLGL   60 (387)
T ss_pred             HHHHHHHHhCCCcEEEEccCcccccc--------Cc--------eeeeecHhHHHHHHHcCC
Confidence            579999999999999999881 1111        11        011223789999999999

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=96.47  E-value=0.0048  Score=44.08  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=33.6

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|  ++|+|+|+++.....      .++    .| .   .-.++..++++++|+.+.
T Consensus        14 l~~A~~L~~~g~g~~v~liE~~~~~~~~------~~~----~~-~---~l~~~~~~~l~~lGl~~~   65 (403)
T PRK07333         14 LALAVALKQAAPHLPVTVVDAAPAGAWS------RDP----RA-S---AIAAAARRMLEALGVWDE   65 (403)
T ss_pred             HHHHHHHhcCCCCCEEEEEeCCCcccCC------CCc----ce-E---EecHHHHHHHHHCCChhh
Confidence            58999999985  999999998753210      000    00 0   113678889999998654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.42  E-value=0.0029  Score=49.40  Aligned_cols=28  Identities=32%  Similarity=0.490  Sum_probs=26.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|||+.+.+||.++
T Consensus       444 l~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        444 LSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            6899999999999999999999999875

>TIGR00275 flavoprotein, HI0933 family

Probab=96.36  E-value=0.0027  Score=46.19  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|+++|++|+|+|+.+.+|+++
T Consensus        10 l~aAi~aa~~G~~V~llEk~~~~G~k~   36 (400)
T TIGR00275        10 LMAAITAAREGLSVLLLEKNKKIGKKL   36 (400)
T ss_pred             HHHHHHHHhcCCcEEEEecCccccccc
Confidence            579999999999999999999999765

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=96.35  E-value=0.0038  Score=44.38  Aligned_cols=54  Identities=15%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|++.|++|+|+|+++.+.....      +  ++....   .-.++..++++++|+.+.+
T Consensus        18 l~~A~~L~~~G~~v~v~E~~~~~~~~~~------~--~~~r~~---~l~~~~~~~l~~~g~~~~~   71 (388)
T PRK07608         18 ASLALALAQSGLRVALLAPRAPPRPADD------A--WDSRVY---AISPSSQAFLERLGVWQAL   71 (388)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCccccCC------C--CCCceE---eecHHHHHHHHHcCchhhh
Confidence            5899999999999999999987543110      0  111111   1236788888999886543

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.34  E-value=0.017  Score=43.02  Aligned_cols=80  Identities=23%  Similarity=0.326  Sum_probs=59.0

Q ss_pred             HHHHhhCCCcEEEEeeCCCcCceEEEEe----------c----------cCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            4 AVELLDQGHEVDIYELRSFIGGKVASFV----------C----------KRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~----------~----------~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |..|++.|.+|+.+|+++.-||..+|..          .          ...+.+|+-|..++.+. .+.+++-.-++..
T Consensus        20 a~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~g-~LV~lLi~S~V~r   98 (438)
T PF00996_consen   20 AAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYARG-PLVKLLISSGVTR   98 (438)
T ss_dssp             HHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETTS-HHHHHHHHCTGGG
T ss_pred             HHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhccC-HHHHHHHhCCccc
Confidence            4578999999999999999999999984          0          11478999999888775 6888888899998


Q ss_pred             ceeeeCceeeEEccCCeEEEE
Q 034688           64 NLLMKDHTHKFVNKGGEIGGI   84 (87)
Q Consensus        64 ~l~~~~~~~~~~~~~g~~~~~   84 (87)
                      .+.++.-...|.+.+|++..+
T Consensus        99 YLEFk~V~~~~v~~~~~l~kV  119 (438)
T PF00996_consen   99 YLEFKAVDGSYVYKNGKLHKV  119 (438)
T ss_dssp             GSEEEEESEEEEEETTEEEE-
T ss_pred             ceEEEEcceeEEEeCCEEeeC
Confidence            888887777788889888764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PLN02661 Putative thiazole synthesis

Probab=96.32  E-value=0.0077  Score=43.80  Aligned_cols=27  Identities=33%  Similarity=0.324  Sum_probs=23.7

Q ss_pred             ChhHHHHhhC-CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ-GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~-G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++ |++|+|+|+...+||.+
T Consensus       105 l~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661        105 LSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             HHHHHHHHHcCCCeEEEEecCcccccce
Confidence            5799999986 89999999999998843

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.31  E-value=0.003  Score=46.65  Aligned_cols=28  Identities=29%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..+++.|++|+|+|+++.+||.|.
T Consensus        16 ~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115         16 YNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             HHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            5799999999999999999889999883

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.27  E-value=0.0038  Score=45.67  Aligned_cols=28  Identities=21%  Similarity=0.424  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+ +.+||.|..
T Consensus        14 l~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350        14 YVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             HHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            5799999999999999999 899998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.24  E-value=0.012  Score=43.14  Aligned_cols=62  Identities=15%  Similarity=0.078  Sum_probs=35.5

Q ss_pred             ChhHHHHhh----CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCcee
Q 034688            1 MSTAVELLD----QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLL   66 (87)
Q Consensus         1 L~aA~~L~~----~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~   66 (87)
                      |++|+.|++    +|++|+|+|+++.+.-....+....+. .+  .. ...-.++.+++++++|+.+.+.
T Consensus        13 l~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~-~~--~R-~~~l~~~s~~~L~~lG~~~~l~   78 (437)
T TIGR01989        13 LALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGP-YS--NR-VSSITPASISFFKKIGAWDHIQ   78 (437)
T ss_pred             HHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCC-CC--CC-eEEcCHHHHHHHHHcCchhhhh
Confidence            589999998    899999999954332100000000000 00  00 1123478899999999876543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.24  E-value=0.0043  Score=47.88  Aligned_cols=29  Identities=31%  Similarity=0.575  Sum_probs=26.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|++.|++|+|+|+.+++||.++.
T Consensus       206 l~aA~~La~~G~~Vtv~e~~~~~GG~l~~  234 (652)
T PRK12814        206 LTAAYYLLRKGHDVTIFDANEQAGGMMRY  234 (652)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCceeee
Confidence            58999999999999999999999998754

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.19  E-value=0.0049  Score=45.65  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+.+.+||..+
T Consensus       156 l~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        156 LAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             HHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            5899999999999999999999999764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.17  E-value=0.0048  Score=45.77  Aligned_cols=29  Identities=24%  Similarity=0.344  Sum_probs=26.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|++.|++|+|||+.+.+||.++.
T Consensus       154 l~aA~~l~~~G~~V~i~e~~~~~gG~l~~  182 (467)
T TIGR01318       154 LACADILARAGVQVVVFDRHPEIGGLLTF  182 (467)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence            57999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.15  E-value=0.0034  Score=44.41  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=21.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +++|++|+++|.+|+|+|+.+..+
T Consensus        13 ~s~A~~La~~g~~V~l~e~~~~~~   36 (380)
T TIGR01377        13 CFAAYHLAKHGKKTLLLEQFDLPH   36 (380)
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCC
Confidence            589999999999999999987654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.14  E-value=0.0054  Score=50.79  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=27.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||-.|-+.|+-|+|||+++|+||...-
T Consensus      1798 laaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1798 LAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             hhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            68999999999999999999999998864

>PRK06834 hypothetical protein; Provisional

Probab=96.14  E-value=0.0084  Score=44.79  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc---CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI---GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~---GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+.+   +.|+.+                  -.++.+++++++|+.+.+
T Consensus        16 l~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~------------------l~~~s~~~L~~lGl~~~l   65 (488)
T PRK06834         16 LMLAGELALAGVDVAIVERRPNQELVGSRAGG------------------LHARTLEVLDQRGIADRF   65 (488)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCCCcceee------------------ECHHHHHHHHHcCcHHHH
Confidence            57999999999999999998753   212111                  136677888888876543

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.11  E-value=0.005  Score=45.20  Aligned_cols=28  Identities=25%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..+++.|++|+|+|+ +.+||.|..
T Consensus        15 ~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424        15 VRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             HHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            4799999999999999998 589998863

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=96.08  E-value=0.0046  Score=46.89  Aligned_cols=27  Identities=37%  Similarity=0.544  Sum_probs=24.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|.+.|++|++||+++.+||.=
T Consensus        14 L~a~k~l~e~g~~~~~fE~~~~iGG~W   40 (531)
T PF00743_consen   14 LAAAKNLLEEGLEVTCFEKSDDIGGLW   40 (531)
T ss_dssp             HHHHHHHHHTT-EEEEEESSSSSSGGG
T ss_pred             HHHHHHHHHCCCCCeEEecCCCCCccC
Confidence            678999999999999999999999965

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=96.05  E-value=0.0052  Score=45.03  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      ++||+.|+++|++|+|+|+.+.+|.+
T Consensus        18 ~~aA~~La~~G~~V~llEr~~~~g~k   43 (428)
T PRK10157         18 SVAALVLAREGAQVLVIERGNSAGAK   43 (428)
T ss_pred             HHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence            47999999999999999999877643

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.05  E-value=0.0055  Score=44.75  Aligned_cols=28  Identities=25%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC-cCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSF-IGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~-~GG~~~   28 (87)
                      ++||..|++.|++|+|+|+++. +||.|-
T Consensus        16 ~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251         16 KTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             HHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            5799999999999999999875 699763

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.05  E-value=0.0072  Score=45.63  Aligned_cols=59  Identities=22%  Similarity=0.237  Sum_probs=43.9

Q ss_pred             ChhHHHHhhC----CCcEEEEeeCCCcCceEEEEecc-CCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688            1 MSTAVELLDQ----GHEVDIYELRSFIGGKVASFVCK-RGNHIEISLHVFFGCYNNLFRLTKKVG   60 (87)
Q Consensus         1 L~aA~~L~~~----G~~V~v~E~~~~~GG~~~s~~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lg   60 (87)
                      ||||.+|-+.    |-+|+|||+.+.+||-+-+.-+. +|+++-.|... -..+..+.++++.+-
T Consensus        15 LAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~~~eclwdLls~IP   78 (500)
T PF06100_consen   15 LAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EFHYECLWDLLSSIP   78 (500)
T ss_pred             HHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cchhHHHHHHHHhCC
Confidence            7899999774    56999999999999988765432 37777666543 456677888887765

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=96.03  E-value=0.0052  Score=43.49  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++||+|+++|.+|+|+|+....+|
T Consensus        17 ls~A~~La~~G~~V~vie~~~~~~g   41 (387)
T COG0665          17 LSAAYYLAERGADVTVLEAGEAGGG   41 (387)
T ss_pred             HHHHHHHHHcCCEEEEEecCccCCc
Confidence            5899999999999999999887764

>PRK06185 hypothetical protein; Provisional

Probab=96.02  E-value=0.02  Score=41.08  Aligned_cols=49  Identities=16%  Similarity=0.089  Sum_probs=33.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+...-        +.    .|..    -.++..++++++|+.+.+
T Consensus        19 l~~A~~La~~G~~v~liE~~~~~~~--------~~----r~~~----l~~~s~~~L~~lG~~~~~   67 (407)
T PRK06185         19 MMLGLLLARAGVDVTVLEKHADFLR--------DF----RGDT----VHPSTLELMDELGLLERF   67 (407)
T ss_pred             HHHHHHHHhCCCcEEEEecCCccCc--------cc----cCce----eChhHHHHHHHcCChhHH
Confidence            5799999999999999999864310        00    0111    135678899999986543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.98  E-value=0.0074  Score=41.06  Aligned_cols=28  Identities=18%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+.+ +||.+..
T Consensus        13 l~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292        13 LTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             HHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            589999999999999999886 7887654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=95.98  E-value=0.0056  Score=44.59  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.++++| .+|+|+||.+..||.+
T Consensus        12 l~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813        12 LSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             HHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            57999999999 9999999999998864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=95.94  E-value=0.0053  Score=44.13  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=23.5

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      +++|++|+++  |++|+|+|+.+.+|+.+
T Consensus        15 ~s~A~~La~~~~g~~V~llE~~~~~~~~a   43 (393)
T PRK11728         15 LSTAMQLQERYPGARIAVLEKESGPARHQ   43 (393)
T ss_pred             HHHHHHHHHhCCCCeEEEEeCCCcccccc
Confidence            4799999998  99999999998877644

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.89  E-value=0.0066  Score=44.99  Aligned_cols=28  Identities=32%  Similarity=0.265  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|++|+|+|+.+.+||.|.
T Consensus        17 ~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467         17 YSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             HHHHHHHHHCCCcEEEEecCCccccccc
Confidence            4789999999999999999889999763

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.89  E-value=0.0065  Score=44.61  Aligned_cols=28  Identities=25%  Similarity=0.381  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+.. +||.|..
T Consensus        17 ~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416         17 YVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             HHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            579999999999999999887 9997744

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.88  E-value=0.0078  Score=44.91  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+.+++||.++.
T Consensus       156 l~aA~~L~~~g~~V~v~e~~~~~gG~l~~  184 (485)
T TIGR01317       156 LAAADQLNRAGHTVTVFEREDRCGGLLMY  184 (485)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence            57999999999999999999999997753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.88  E-value=0.0077  Score=44.34  Aligned_cols=28  Identities=32%  Similarity=0.538  Sum_probs=25.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+.+.+||...
T Consensus       153 l~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        153 LTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             HHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            5799999999999999999999999764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.85  E-value=0.0088  Score=43.71  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=25.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~GG~~~s   29 (87)
                      |+||..|+++|++|+|+|+.+ .+||.|..
T Consensus        16 l~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010         16 KTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            579999999999999999987 58998854

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.83  E-value=0.014  Score=41.53  Aligned_cols=21  Identities=24%  Similarity=0.214  Sum_probs=18.8

Q ss_pred             ChhHHHHhhC---CCcEEEEeeCC
Q 034688            1 MSTAVELLDQ---GHEVDIYELRS   21 (87)
Q Consensus         1 L~aA~~L~~~---G~~V~v~E~~~   21 (87)
                      |++|+.|+++   |++|+|+|+..
T Consensus        16 l~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732         16 ATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             HHHHHHhhhcccCCCEEEEEeCCC
Confidence            5899999998   99999999963

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=95.81  E-value=0.0058  Score=44.03  Aligned_cols=25  Identities=28%  Similarity=0.474  Sum_probs=22.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..++++|.+|+|+|+.+..||
T Consensus        12 l~AA~~Aae~G~~V~lvek~~~~gg   36 (417)
T PF00890_consen   12 LAAAIEAAEAGAKVLLVEKGPRLGG   36 (417)
T ss_dssp             HHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred             HHHHHHHhhhcCeEEEEEeeccccc
Confidence            5899999999999999999999999

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.80  E-value=0.0094  Score=45.14  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             ChhHHHH-hhCCCcEEEEeeCCCcCceEEEEe
Q 034688            1 MSTAVEL-LDQGHEVDIYELRSFIGGKVASFV   31 (87)
Q Consensus         1 L~aA~~L-~~~G~~V~v~E~~~~~GG~~~s~~   31 (87)
                      |+||.+| ++.|++|+|||+.+.+||.++.-.
T Consensus        52 lyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GV   83 (506)
T PTZ00188         52 LYCCKHLLKHERVKVDIFEKLPNPYGLIRYGV   83 (506)
T ss_pred             HHHHHHHHHhcCCeEEEEecCCCCccEEEEeC
Confidence            4677765 467999999999999999998653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=95.77  E-value=0.019  Score=40.91  Aligned_cols=55  Identities=16%  Similarity=0.200  Sum_probs=34.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++...     .  ..+...+  .+ ...-.++..++++++|+.+.+
T Consensus        18 l~~A~~La~~G~~V~liE~~~~~~-----~--~~~~~~~--~r-~~~l~~~~~~~l~~lGl~~~~   72 (391)
T PRK08020         18 AALALGLAQHGFSVAVLEHAAPAP-----F--DADSQPD--VR-ISAISAASVALLKGLGVWDAV   72 (391)
T ss_pred             HHHHHHHhcCCCEEEEEcCCCCCc-----c--cccCCCC--ce-EEeccHHHHHHHHHcCChhhh
Confidence            578999999999999999986421     0  0000001  11 112235678889999986543

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=95.72  E-value=0.0097  Score=44.64  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++++++|.+|+|+|+.+..||.+
T Consensus        19 l~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837         19 VAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            589999999999999999999988855

>PRK06116 glutathione reductase; Validated

Probab=95.71  E-value=0.0064  Score=44.55  Aligned_cols=27  Identities=22%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|++|+|+|+. .+||.|.
T Consensus        17 ~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116         17 IASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             HHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            57999999999999999985 8999773

>PRK10015 oxidoreductase; Provisional

Probab=95.71  E-value=0.0085  Score=43.98  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      ++||+.|+++|++|+|+|+.+.+|
T Consensus        18 ~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015         18 SVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCCC
Confidence            589999999999999999988764

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=95.68  E-value=0.0096  Score=42.12  Aligned_cols=22  Identities=23%  Similarity=0.223  Sum_probs=20.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      +++|++|+++|++|+|+|+...
T Consensus        13 ~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364        13 LAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999875

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=95.66  E-value=0.0082  Score=42.44  Aligned_cols=24  Identities=13%  Similarity=-0.148  Sum_probs=21.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +++|++|++.|++|+|+|+....+
T Consensus        16 ~s~A~~L~~~g~~V~lie~~~~~~   39 (376)
T PRK11259         16 SAAGYYLARRGLRVLGLDRFMPPH   39 (376)
T ss_pred             HHHHHHHHHCCCeEEEEecccCCC
Confidence            579999999999999999987654

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.64  E-value=0.0091  Score=42.87  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|++|+++|++|+|+|+...+|.
T Consensus        13 ls~A~~l~~~g~~V~vle~~~~~~~   37 (416)
T PRK00711         13 VTSAWYLAQAGHEVTVIDRQPGPAL   37 (416)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchhh
Confidence            5899999999999999999876554

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=95.63  E-value=0.0092  Score=43.76  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..++++|.+|+|+|+.+.+||...
T Consensus        12 ~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen   12 VAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             HHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             HHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            4799999999999999999999999764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=95.63  E-value=0.01  Score=40.10  Aligned_cols=25  Identities=36%  Similarity=0.347  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|+.|++.|++|+|+|+++.++.
T Consensus        13 l~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032        13 ASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCCc
Confidence            5799999999999999999988765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.62  E-value=0.0099  Score=43.90  Aligned_cols=28  Identities=18%  Similarity=0.219  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..|++.|++|+|+|+. .+||.|..
T Consensus        17 ~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976         17 YVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             HHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            57999999999999999985 89998854

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.62  E-value=0.012  Score=44.55  Aligned_cols=28  Identities=36%  Similarity=0.560  Sum_probs=25.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+.+.+||..+
T Consensus       150 L~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        150 LSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            6899999999999999999999999775

>PRK14727 putative mercuric reductase; Provisional

Probab=95.62  E-value=0.0099  Score=44.12  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..|++.|.+|+|+|+.+.+||.|..
T Consensus        29 ~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         29 FAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             HHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            47899999999999999999999998854

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.57  E-value=0.0092  Score=44.00  Aligned_cols=27  Identities=19%  Similarity=0.374  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|++|+|+|+. .+||.|.
T Consensus        15 ~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421        15 IASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             HHHHHHHHHCCCcEEEeccc-cccccee
Confidence            47999999999999999985 6999774

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07121 hypothetical protein; Validated

Probab=95.56  E-value=0.011  Score=44.00  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.++++|.+|+|+||.+..||..
T Consensus        33 l~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         33 ACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            589999999999999999999999855

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.52  E-value=0.011  Score=43.84  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCc-EEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHE-VDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~-V~v~E~~~~~GG~   26 (87)
                      |++|++|.++|.+ ++||||+.++||-
T Consensus        21 laaa~~L~~~g~~~~~i~Ek~~~~Gg~   47 (443)
T COG2072          21 LAAAYALKQAGVPDFVIFEKRDDVGGT   47 (443)
T ss_pred             HHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence            5899999999998 9999999999996

>PRK07190 hypothetical protein; Provisional

Probab=95.52  E-value=0.024  Score=42.40  Aligned_cols=23  Identities=13%  Similarity=-0.204  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |++|..|+++|++|+|+|+.+.+
T Consensus        18 L~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190         18 LMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcc
Confidence            57899999999999999999875

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=95.49  E-value=0.026  Score=42.51  Aligned_cols=53  Identities=30%  Similarity=0.320  Sum_probs=36.2

Q ss_pred             ChhHHHHhh------CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLD------QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~------~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      ||||.+|.+      .-++|+|+|++..+||.+-|     |.++|-++-      .+++.=+++-+.+..
T Consensus        89 LsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS-----Gaviep~al------dEL~P~wke~~apl~  147 (621)
T KOG2415|consen   89 LSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS-----GAVIEPGAL------DELLPDWKEDGAPLN  147 (621)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEeeccccCCceec-----ceeeccchh------hhhCcchhhcCCccc
Confidence            689999864      34799999999999997755     566665542      344444555555543

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=95.49  E-value=0.034  Score=41.25  Aligned_cols=47  Identities=32%  Similarity=0.455  Sum_probs=32.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|+++|++|+|||++..+-|-        |..+.+.        -|.++.++.+++.+
T Consensus        15 la~A~~l~r~G~~v~VlE~~e~~R~~--------g~si~L~--------~ng~~aLkai~~~e   61 (420)
T KOG2614|consen   15 LATALALHRKGIDVVVLESREDPRGE--------GTSINLA--------LNGWRALKAIGLKE   61 (420)
T ss_pred             HHHHHHHHHcCCeEEEEeeccccccC--------Ccceeeh--------hhHHHHHHHcccHH
Confidence            58999999999999999998776553        2222221        23667777777554

>PRK13984 putative oxidoreductase; Provisional

Probab=95.45  E-value=0.015  Score=44.33  Aligned_cols=28  Identities=39%  Similarity=0.420  Sum_probs=25.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|++|+|||+.+.+||..+
T Consensus       296 l~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        296 LSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            5799999999999999999999999765

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=95.34  E-value=0.013  Score=41.73  Aligned_cols=26  Identities=31%  Similarity=0.427  Sum_probs=22.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |++|+.|++.|++|+|+|+++.+||-
T Consensus        12 l~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790        12 LAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             HHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            57899999999999999999887763

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=95.26  E-value=0.015  Score=44.17  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=25.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.++++|.+|+|+||.+..||...
T Consensus        22 l~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842         22 LSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             HHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            5899999999999999999999998764

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.24  E-value=0.016  Score=42.72  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=24.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..|++.|.+|+|+|+. .+||.|..
T Consensus        17 ~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818         17 YVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             HHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            57999999999999999984 78998754

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=95.23  E-value=0.016  Score=43.46  Aligned_cols=27  Identities=37%  Similarity=0.450  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.++++|.+|+|+|+.+.+||..
T Consensus        74 l~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         74 MSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            579999999999999999999999854

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=95.21  E-value=0.013  Score=43.10  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |.||..|++.|.+|+|+|+.+++|
T Consensus        13 l~aA~~aa~~g~~V~vlE~~~~~g   36 (409)
T PF03486_consen   13 LMAAITAAEKGARVLVLERNKRVG   36 (409)
T ss_dssp             HHHHHHHHHTT--EEEE-SSSSS-
T ss_pred             HHHHHHHHhCCCCEEEEeCCcccc
Confidence            579999999999999999999995

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02053 MerA mercuric reductase

Probab=95.21  E-value=0.016  Score=42.61  Aligned_cols=27  Identities=22%  Similarity=0.448  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|+++|++|+|+|+.+ +||.|-
T Consensus        13 ~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053        13 FAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             HHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            479999999999999999876 888764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06370 mercuric reductase; Validated

Probab=95.18  E-value=0.017  Score=42.58  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=23.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|++|+|+|+. .+||.|.
T Consensus        18 ~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370         18 PPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             HHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            47999999999999999986 6788764

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.17  E-value=0.016  Score=42.43  Aligned_cols=27  Identities=22%  Similarity=0.289  Sum_probs=24.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+ +.+||.|.
T Consensus        16 l~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292         16 YVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             HHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            5799999999999999999 78999775

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.17  E-value=0.021  Score=43.23  Aligned_cols=28  Identities=18%  Similarity=0.165  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+. .+||.+..
T Consensus        17 L~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143        17 LSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             HHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            68999999999999999985 79998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00367 squalene epoxidase; Provisional

Probab=95.17  E-value=0.042  Score=42.08  Aligned_cols=50  Identities=20%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      +++|..|+++|++|+|+|+++..-        .+ ..  .|.    .-.++..+.++++|+.+.+
T Consensus        46 lalA~aLar~G~~V~VlEr~~~~~--------~~-r~--~G~----~L~p~g~~~L~~LGL~d~l   95 (567)
T PTZ00367         46 PVLAKALSKQGRKVLMLERDLFSK--------PD-RI--VGE----LLQPGGVNALKELGMEECA   95 (567)
T ss_pred             HHHHHHHHhcCCEEEEEccccccc--------cc-hh--hhh----hcCHHHHHHHHHCCChhhH
Confidence            578999999999999999875200        00 00  111    1247889999999997644

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.16  E-value=0.014  Score=45.01  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|++|+++|++|+|+|+...+|.
T Consensus       273 ~s~A~~La~~G~~V~VlE~~~~~~~  297 (662)
T PRK01747        273 AALALALARRGWQVTLYEADEAPAQ  297 (662)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCccc
Confidence            4799999999999999999876654

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.14  E-value=0.019  Score=43.61  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|.+|+|+|+.+.+||.+
T Consensus        19 l~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844         19 MCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            579999999999999999999999965

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=95.07  E-value=0.021  Score=43.12  Aligned_cols=28  Identities=29%  Similarity=0.480  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC--CcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS--FIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~--~~GG~~~   28 (87)
                      |+||..++++|.+|+|+|+.+  .+||.+.
T Consensus        17 l~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834         17 LVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            589999999999999999999  8899653

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.03  E-value=0.021  Score=46.06  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=26.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+.+++||.+..
T Consensus       176 LaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       176 LAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             HHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            68999999999999999999999998853

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.03  E-value=0.016  Score=47.05  Aligned_cols=26  Identities=23%  Similarity=0.134  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||++|++.|++|+|||+.+..|+-
T Consensus       396 LsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        396 FSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             HHHHHHHHhCCCeEEEEccccccccc
Confidence            68999999999999999998765553

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.03  E-value=0.028  Score=39.97  Aligned_cols=29  Identities=28%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+.+.+||.+..
T Consensus        31 l~aA~~l~~~g~~v~lie~~~~~gg~~~~   59 (352)
T PRK12770         31 LAAAGYLACLGYEVHVYDKLPEPGGLMLF   59 (352)
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence            57899999999999999999999998753

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.00  E-value=0.016  Score=41.40  Aligned_cols=23  Identities=30%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCc
Q 034688            3 TAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +||+|+++|++|+|+|+...+|+
T Consensus         1 ~A~~La~~G~~V~vlE~~~~~~~   23 (381)
T TIGR03197         1 TAYSLARRGWQVTLYEQDEAPAQ   23 (381)
T ss_pred             ChHHHHhCCCeeEEEeCCCcccc
Confidence            69999999999999999766654

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=94.97  E-value=0.037  Score=42.75  Aligned_cols=47  Identities=15%  Similarity=0.146  Sum_probs=34.3

Q ss_pred             ChhHHHHhh-CCCcEEEEeeCCCc--CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLD-QGHEVDIYELRSFI--GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E~~~~~--GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|++ .|++|+|+|+++..  .|++-            |   +   .++.+++++++|+.+.+
T Consensus        45 L~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------g---l---~prtleiL~~lGl~d~l   94 (634)
T PRK08294         45 LTLAAQLSAFPDITTRIVERKPGRLELGQAD------------G---I---ACRTMEMFQAFGFAERI   94 (634)
T ss_pred             HHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------E---E---ChHHHHHHHhccchHHH
Confidence            689999999 59999999988643  12211            1   1   37889999999987654

>TIGR02028 ChlP geranylgeranyl reductase

Probab=94.93  E-value=0.021  Score=41.40  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      ++||+.|+++|++|+|+|++...+
T Consensus        13 ~~aA~~la~~G~~V~llE~~~~~~   36 (398)
T TIGR02028        13 ASAAETLASAGIQTFLLERKPDNA   36 (398)
T ss_pred             HHHHHHHHhCCCcEEEEecCCCCC
Confidence            479999999999999999986644

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=94.88  E-value=0.023  Score=41.78  Aligned_cols=27  Identities=22%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC--cCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSF--IGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~--~GG~~   27 (87)
                      |+||+.++++|.+|+|+||.+.  .||..
T Consensus        17 l~AA~~aa~~G~~V~vlEk~~~~~~GG~s   45 (466)
T PRK08274         17 LCAALAAREAGASVLLLEAAPREWRGGNS   45 (466)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence            5899999999999999999985  67743

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.88  E-value=0.022  Score=43.47  Aligned_cols=28  Identities=36%  Similarity=0.510  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||...+++|.+|+|+||.+.+||.+.
T Consensus        28 ~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         28 MAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            5789999999999999999999999664

>PRK13748 putative mercuric reductase; Provisional

Probab=94.87  E-value=0.02  Score=42.98  Aligned_cols=27  Identities=33%  Similarity=0.553  Sum_probs=24.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|.+|.|+|+. .+||-|.
T Consensus       111 ~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748        111 MAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             HHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            47999999999999999987 8999874

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.84  E-value=0.023  Score=43.09  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|.+|+|+|+.+.+||.+
T Consensus        20 ~~aA~~aa~~G~~v~llEk~~~~gG~~   46 (557)
T PRK07843         20 MVAALTAAHRGLSTVVVEKAPHYGGST   46 (557)
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence            579999999999999999999998844

>PRK12839 hypothetical protein; Provisional

Probab=94.82  E-value=0.024  Score=43.30  Aligned_cols=28  Identities=36%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|.+|+|+|+...+||.+.
T Consensus        21 ~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839         21 LSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            5789999999999999999999999764

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=94.75  E-value=0.023  Score=41.91  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~   22 (87)
                      |++|++|+++  |.+|+|+|+...
T Consensus        37 ls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        37 LWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             HHHHHHHHHhCCCCeEEEEeCCcc
Confidence            5899999998  999999999654

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK14694 putative mercuric reductase; Provisional

Probab=94.70  E-value=0.027  Score=41.65  Aligned_cols=27  Identities=30%  Similarity=0.500  Sum_probs=24.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|++|+|+|+. .+||-|.
T Consensus        19 ~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694         19 MAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             HHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            57999999999999999986 7999775

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=94.55  E-value=0.03  Score=42.67  Aligned_cols=28  Identities=32%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.++++|.+|+|+|+.+.+||.+.
T Consensus        25 ~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         25 LSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            5789999999999999999999999764

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=94.55  E-value=0.037  Score=41.88  Aligned_cols=39  Identities=26%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIE   39 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d   39 (87)
                      |+||.+|++.|.+|.|+|++.+.||-+-+...-.|+-++
T Consensus        27 L~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfs   65 (561)
T KOG4254|consen   27 LTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFS   65 (561)
T ss_pred             hhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccc
Confidence            689999999999999999999999977664322344433

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.54  E-value=0.028  Score=40.03  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=20.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |++|+.|+++|++|+|+|+.+.+
T Consensus        20 l~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494         20 LAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             HHHHHHHhcCCCeEEEEeCCCCC
Confidence            58999999999999999998764

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=94.34  E-value=0.035  Score=42.33  Aligned_cols=28  Identities=32%  Similarity=0.398  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..++++|.+|+|+|+.+.+||.+.
T Consensus        29 ~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         29 MSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            4789999999999999999999999764

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=94.32  E-value=0.036  Score=39.84  Aligned_cols=20  Identities=25%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeC
Q 034688            1 MSTAVELLDQGHEVDIYELR   20 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~   20 (87)
                      ++||+.|+++|++|+|+|++
T Consensus        13 ~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023        13 ATAAETLARAGIETILLERA   32 (388)
T ss_pred             HHHHHHHHhCCCcEEEEECC
Confidence            57999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=94.18  E-value=0.041  Score=42.09  Aligned_cols=26  Identities=23%  Similarity=0.403  Sum_probs=24.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+||.+..||.
T Consensus        24 l~AA~~aae~G~~VivlEk~~~~gG~   49 (584)
T PRK12835         24 MTAALTAAARGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             HHHHHHHHHCCCcEEEEEcCCCCCch
Confidence            57999999999999999999999984

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=94.14  E-value=0.043  Score=40.08  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC--cCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSF--IGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~--~GG~~   27 (87)
                      |+||..++++|.+|+|+||.+.  .||-.
T Consensus         9 l~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s   37 (432)
T TIGR02485         9 LCAAIEARRAGASVLLLEAAPRARRGGNA   37 (432)
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence            5799999999999999999985  56644

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=94.03  E-value=0.045  Score=41.07  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|++|+++|++|+|+|+.+..+|
T Consensus        19 ~~~A~~la~rGl~V~LvEk~d~~~G   43 (508)
T PRK12266         19 AGIARDAAGRGLSVLLCEQDDLASA   43 (508)
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCC
Confidence            4789999999999999999876655

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=93.92  E-value=0.048  Score=41.31  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|++|+++|++|+|+|+.+-.+|
T Consensus        19 ~~iA~~La~rG~~V~LlEk~d~~~G   43 (546)
T PRK11101         19 AGIARDCALRGLRCILVERHDIATG   43 (546)
T ss_pred             HHHHHHHHHcCCeEEEEECCCCCCC
Confidence            4789999999999999999764433

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.88  E-value=0.052  Score=40.60  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|++|+++|++|+|+|+.+-.+|
T Consensus        19 ~~~A~~la~rG~~V~LlEk~d~~~G   43 (502)
T PRK13369         19 AGIARDAAGRGLKVLLCEKDDLAQG   43 (502)
T ss_pred             HHHHHHHHhCCCcEEEEECCCCCCC
Confidence            4799999999999999999975544

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.87  E-value=0.053  Score=40.61  Aligned_cols=29  Identities=24%  Similarity=0.471  Sum_probs=24.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC--------CcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS--------FIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~--------~~GG~~~s   29 (87)
                      ++||..|+++|.+|+|+|+.+        .+||.|-.
T Consensus        18 ~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n   54 (499)
T PTZ00052         18 MAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN   54 (499)
T ss_pred             HHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence            579999999999999999631        59998843

>PRK10262 thioredoxin reductase; Provisional

Probab=93.78  E-value=0.055  Score=37.81  Aligned_cols=28  Identities=14%  Similarity=0.075  Sum_probs=24.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|++.|++|+|+|+. .+||.+..
T Consensus        19 l~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262         19 YTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             HHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            68999999999999999954 78997754

>PTZ00058 glutathione reductase; Provisional

Probab=93.68  E-value=0.053  Score=41.48  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..+++.|.+|+|+|+. .+||.|-.
T Consensus        61 ~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         61 MAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             HHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            36899999999999999986 79998743

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=93.65  E-value=0.057  Score=40.00  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEee------CCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYEL------RSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~------~~~~GG~~~s   29 (87)
                      ++||.+|++.|.+|+|+|+      ...+||.|..
T Consensus        17 ~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n   51 (475)
T PRK06327         17 YVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN   51 (475)
T ss_pred             HHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence            5799999999999999998      4688998854

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.49  E-value=0.056  Score=40.49  Aligned_cols=24  Identities=13%  Similarity=0.134  Sum_probs=20.9

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      +++|++|++.  |.+|+|+|+.+.+|
T Consensus        13 ~a~A~~L~~~~~g~~V~VlEk~~~~a   38 (483)
T TIGR01320        13 ATLGVLLRELEPNWSITLIERLDAVA   38 (483)
T ss_pred             HHHHHHHHHhCCCCeEEEEEcCCcch
Confidence            4799999997  99999999987655

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=93.47  E-value=0.061  Score=40.10  Aligned_cols=25  Identities=28%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +.||+.|++.|++|+|+|+++.++-
T Consensus        13 leaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137        13 SEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             HHHHHHHHhCCCcEEEEeccccccC
Confidence            4689999999999999998877544

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.44  E-value=0.055  Score=38.16  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |-+|..|+++|++|+++|+.+++||...
T Consensus       149 le~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         149 LEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             HHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            4578999999999999999999999764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.37  E-value=0.069  Score=39.54  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ++||..|++.|.+|+|+|+. .+||.|..
T Consensus        14 ~~~a~~~~~~g~~v~~~e~~-~~gG~c~~   41 (466)
T PRK07845         14 YEAALVAAQLGADVTVIERD-GLGGAAVL   41 (466)
T ss_pred             HHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence            46899999999999999986 48998843

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=93.34  E-value=0.064  Score=39.54  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      ++||..|++.|.+|+|+|+. .+||-|-
T Consensus        13 ~~aA~~~~~~g~~V~lie~~-~~GG~c~   39 (458)
T PRK06912         13 YVAAITAAQNGKNVTLIDEA-DLGGTCL   39 (458)
T ss_pred             HHHHHHHHhCCCcEEEEECC-cccccCC
Confidence            47899999999999999986 5787663

>PLN02507 glutathione reductase

Probab=93.30  E-value=0.082  Score=39.65  Aligned_cols=29  Identities=28%  Similarity=0.276  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEee---------CCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYEL---------RSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s   29 (87)
                      ++||..+++.|.+|+|+|+         .+.+||.|--
T Consensus        38 ~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         38 VRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             HHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            4789999999999999996         4679999843

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=93.25  E-value=0.07  Score=38.37  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=18.7

Q ss_pred             ChhHHHHhhC-CC-cEEEEeeCCC
Q 034688            1 MSTAVELLDQ-GH-EVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~-G~-~V~v~E~~~~   22 (87)
                      +++|++|+++ |. +|+|+|++.-
T Consensus        43 ~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        43 LATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             HHHHHHHHHhcCCCeEEEEEcccc
Confidence            5899999995 95 9999999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=93.15  E-value=0.07  Score=39.63  Aligned_cols=22  Identities=23%  Similarity=0.090  Sum_probs=19.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      ++||+.|+++|++|+|+|++..
T Consensus        52 ~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         52 ACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             HHHHHHHHhCCCcEEEEecCCC
Confidence            4789999999999999999853

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=93.09  E-value=0.067  Score=41.87  Aligned_cols=21  Identities=19%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC
Q 034688            1 MSTAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~   21 (87)
                      |++|..|+++|++|+|||+++
T Consensus        94 LalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         94 LVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             HHHHHHHHhcCCeEEEEeccc
Confidence            689999999999999999975

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.06  E-value=0.21  Score=36.97  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             HHHHhhCCCcEEEEeeCCCcCceEEEEecc---------------C----CeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            4 AVELLDQGHEVDIYELRSFIGGKVASFVCK---------------R----GNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~---------------~----g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      +..|+-+|.+|+.+|+++.-|+-.+|.+..               .    .+-+|+-|..++++. .+..++-+.++...
T Consensus        22 s~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~s-~l~~iLi~t~v~~Y  100 (434)
T COG5044          22 SAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFANS-ELLKILIETGVTEY  100 (434)
T ss_pred             HHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcccc-hHHHHHHHhChHhh
Confidence            446778899999999999999998887410               0    245777787776654 68889999999999


Q ss_pred             eeeeCceeeEEccCCeEEEE
Q 034688           65 LLMKDHTHKFVNKGGEIGGI   84 (87)
Q Consensus        65 l~~~~~~~~~~~~~g~~~~~   84 (87)
                      +.+.+-+.+|.++.|++..+
T Consensus       101 Lefk~i~~~~~~~~~k~~kV  120 (434)
T COG5044         101 LEFKQISGSFLYRPGKIYKV  120 (434)
T ss_pred             eeeeeccccEEecCCcEEEC
Confidence            99888888888888776653

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=93.06  E-value=0.083  Score=38.15  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=23.0

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~   26 (87)
                      |++|+.|+++  |++|+|+|+.+..||.
T Consensus        12 l~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789        12 GLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            5789999987  9999999999988873

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=92.93  E-value=0.088  Score=39.86  Aligned_cols=27  Identities=15%  Similarity=0.101  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|.+|+|+||.+..||..
T Consensus        12 l~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812        12 LRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             HHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            579999999999999999998877643

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=92.86  E-value=0.092  Score=39.24  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +.||+.|++.|++|+|+|+++...
T Consensus        15 leAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335         15 SEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             HHHHHHHHhCCCcEEEEEccCccC
Confidence            479999999999999999877654

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=92.50  E-value=0.1  Score=40.30  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      .++|++|+++|++|+|+|+.+-.+|
T Consensus        84 a~~A~~lA~rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         84 AGVALDAATRGLRVGLVEREDFSSG  108 (627)
T ss_pred             HHHHHHHHhCCCEEEEEeccccCCC
Confidence            3789999999999999999966555

>TIGR02462 pyranose_ox pyranose oxidase

Probab=92.27  E-value=0.13  Score=39.41  Aligned_cols=25  Identities=20%  Similarity=0.097  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|+.|+++|++|+|+|+....||
T Consensus        13 ~~~a~~l~~~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462        13 CTYARLCVDAGLKVAMVEIGAADSF   37 (544)
T ss_pred             HHHHHHHHHCCCeEEEEeccCccCC
Confidence            4689999999999999999999986

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=92.17  E-value=0.15  Score=38.31  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||.+|++.|++|+|+|.  ++||.+..
T Consensus       224 l~aA~~la~~G~~v~li~~--~~GG~~~~  250 (517)
T PRK15317        224 AAAAIYAARKGIRTGIVAE--RFGGQVLD  250 (517)
T ss_pred             HHHHHHHHHCCCcEEEEec--CCCCeeec
Confidence            5899999999999999985  59998853

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=92.13  E-value=0.12  Score=38.80  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.+|++.|++|+|+|.  ++||.+.
T Consensus       225 l~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       225 AAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             HHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            5899999999999999984  6999875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07804 L-aspartate oxidase; Provisional

Probab=91.94  E-value=0.14  Score=38.76  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..++++|.+|+|+||.+..||
T Consensus        29 l~AAi~aae~G~~VilleK~~~~~g   53 (541)
T PRK07804         29 LTAALAARRAGRRVLVVTKAALDDG   53 (541)
T ss_pred             HHHHHHHHHcCCeEEEEEccCCCCC
Confidence            5799999999999999999998876

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=91.87  E-value=0.21  Score=37.46  Aligned_cols=29  Identities=21%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEEE
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVASF   30 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~   30 (87)
                      +||.++++.|.+|.++|+.+.+||-|--+
T Consensus        18 ~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249          18 VAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             HHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            68999999999999999999999988654

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=0.28  Score=36.58  Aligned_cols=78  Identities=22%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             HHhhCCCcEEEEeeCCCcCceEEEEecc--------------------CCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            6 ELLDQGHEVDIYELRSFIGGKVASFVCK--------------------RGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         6 ~L~~~G~~V~v~E~~~~~GG~~~s~~~~--------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      .|+.+|.+|+.+|+++.-||-.+|.+..                    ..+-+|+-|..++++. .+.+++-+.++...+
T Consensus        22 ~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn~-~Lvk~Li~T~V~~YL  100 (440)
T KOG1439|consen   22 ALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMANG-ELVKILIHTGVTRYL  100 (440)
T ss_pred             eeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhccc-hHHHHHHHhchhhhe
Confidence            4678899999999999999999887410                    0244677777666554 588889999999999


Q ss_pred             eeeCceeeEEccCCeEEEE
Q 034688           66 LMKDHTHKFVNKGGEIGGI   84 (87)
Q Consensus        66 ~~~~~~~~~~~~~g~~~~~   84 (87)
                      .++.-..+|.+++|++..+
T Consensus       101 ~fk~i~gsfv~~~~k~~KV  119 (440)
T KOG1439|consen  101 EFKSISGSFVYKKGKIYKV  119 (440)
T ss_pred             EEEeecceEEEECCeEEEC
Confidence            9988888888888877653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.68  E-value=0.15  Score=39.08  Aligned_cols=26  Identities=15%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+||.+..||.
T Consensus        16 l~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641         16 LMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             HHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            57999999999999999999987763

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=91.67  E-value=0.14  Score=42.23  Aligned_cols=27  Identities=30%  Similarity=0.398  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||...+++|.+|+|+||.+..||.+
T Consensus       422 l~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        422 CSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             HHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            579999999999999999999999965

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=91.64  E-value=0.18  Score=37.37  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |-||..++++|++|+|+|+.+.+|=++.
T Consensus        16 lMaA~~aa~~G~~V~lid~~~k~GrKil   43 (408)
T COG2081          16 LMAAISAAKAGRRVLLIDKGPKLGRKIL   43 (408)
T ss_pred             HHHHHHHhhcCCEEEEEecCccccceeE
Confidence            4689999999999999999999986654

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=91.62  E-value=0.18  Score=36.99  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+|+|.++.++|+.+-+==+.
T Consensus        20 ~stAyeLaK~g~killLeqf~~ph~~G   46 (399)
T KOG2820|consen   20 LSTAYELAKRGDKILLLEQFPLPHSRG   46 (399)
T ss_pred             hHHHHHHHhcCCeEEEEeccCCCcccC
Confidence            689999999999999999987654333

>PLN02546 glutathione reductase

Probab=91.49  E-value=0.16  Score=38.82  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEee---------CCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYEL---------RSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~---------~~~~GG~~~s   29 (87)
                      +.||..+++.|.+|+|+|+         ...+||-|--
T Consensus        92 ~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n  129 (558)
T PLN02546         92 VRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL  129 (558)
T ss_pred             HHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence            3689999999999999996         3568887743

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.48  E-value=0.17  Score=37.92  Aligned_cols=28  Identities=11%  Similarity=0.274  Sum_probs=23.6

Q ss_pred             hhHHHHhhC-CCcEEEEeeC--------CCcCceEEE
Q 034688            2 STAVELLDQ-GHEVDIYELR--------SFIGGKVAS   29 (87)
Q Consensus         2 ~aA~~L~~~-G~~V~v~E~~--------~~~GG~~~s   29 (87)
                      +||..+++. |.+|.|+|+.        +.+||-|-.
T Consensus        17 ~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln   53 (486)
T TIGR01423        17 EAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN   53 (486)
T ss_pred             HHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence            688999996 9999999984        579998844

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.44  E-value=0.25  Score=38.15  Aligned_cols=25  Identities=20%  Similarity=0.239  Sum_probs=22.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..++++|.+|+|+|+.+..||
T Consensus        21 l~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803         21 LRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             HHHHHHHHHCCCCEEEEeccCCCCC
Confidence            5799999999999999999987665

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=91.28  E-value=0.13  Score=38.73  Aligned_cols=27  Identities=7%  Similarity=0.044  Sum_probs=22.1

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      +++|++|++.  |.+|+|+||.+.+|...
T Consensus        18 ~slA~~L~~~~~g~~V~VlEk~~~~a~~s   46 (494)
T PRK05257         18 ATLGTLLKELEPEWSITMFERLDGVALES   46 (494)
T ss_pred             HHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence            4789999984  78999999998776543

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=91.14  E-value=0.23  Score=37.17  Aligned_cols=70  Identities=16%  Similarity=0.128  Sum_probs=40.5

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCce---eeEEccC
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHT---HKFVNKG   78 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~---~~~~~~~   78 (87)
                      +.|+.|++.|.+|+|+||.-.-=-|+-      |-.          -+|.-...++++|+++.+.-.+.+   ..-..++
T Consensus        59 aLa~~L~kdGRrVhVIERDl~EPdRiv------GEl----------lQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~  122 (509)
T KOG1298|consen   59 ALAYALAKDGRRVHVIERDLSEPDRIV------GEL----------LQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD  122 (509)
T ss_pred             HHHHHHhhCCcEEEEEecccccchHHH------HHh----------cCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence            468999999999999997542111110      000          023334577888988754433322   2222357


Q ss_pred             CeEEEEecC
Q 034688           79 GEIGGIVIS   87 (87)
Q Consensus        79 g~~~~~~~~   87 (87)
                      |+-..+..|
T Consensus       123 gk~v~~pyP  131 (509)
T KOG1298|consen  123 GKEVDLPYP  131 (509)
T ss_pred             CceeeccCC
Confidence            777766655

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.07  E-value=0.24  Score=37.88  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+||....||.
T Consensus         1 l~AAl~aa~~G~~V~lveK~~~~~g~   26 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSH   26 (570)
T ss_pred             ChhHHhHHhcCCcEEEEEcCCCCCch
Confidence            78999999999999999999887774

>PRK11445 putative oxidoreductase; Provisional

Probab=91.00  E-value=0.18  Score=35.89  Aligned_cols=22  Identities=14%  Similarity=-0.031  Sum_probs=19.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |++|..|+++ ++|+|+|+++.+
T Consensus        14 l~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445         14 SALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             HHHHHHHhcc-CCEEEEECCCcc
Confidence            5789999999 999999999864

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=90.90  E-value=0.21  Score=38.42  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=21.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |+||..++++|.+|+|+||.+.++
T Consensus        11 l~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811        11 GMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             HHHHHHHHHcCCCEEEEEecCCCC
Confidence            579999999999999999999664

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.87  E-value=0.21  Score=38.11  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|.+|+|+||.+..||.+
T Consensus        18 l~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452         18 LMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             HHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            579999999999999999998877743

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=90.64  E-value=0.26  Score=36.54  Aligned_cols=27  Identities=33%  Similarity=0.534  Sum_probs=22.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC--CcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRS--FIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~--~~GG~~   27 (87)
                      |.||.+|+.+|.+|+|+|++.  .+||.+
T Consensus        18 lvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573          18 LVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             HHHHHHHHhcCceEEEEccccccccccee
Confidence            578999999999999997765  488865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.55  E-value=0.4  Score=26.86  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.6

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcC
Q 034688            2 STAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      -+|..|++.|.+|+|+|+++.+.
T Consensus        13 E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen   13 ELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             HHHHHHHHTTSEEEEEESSSSSS
T ss_pred             HHHHHHHHhCcEEEEEeccchhh
Confidence            36888899999999999999988

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=90.39  E-value=0.24  Score=38.73  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=24.0

Q ss_pred             hhHHHHhhCCCcEEEEeeC-CCcCceEEE
Q 034688            2 STAVELLDQGHEVDIYELR-SFIGGKVAS   29 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~-~~~GG~~~s   29 (87)
                      +||..+++.|.+|+|+|+. +.+||-|--
T Consensus       130 ~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        130 AAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             HHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            6899999999999999975 479998744

>PRK06996 hypothetical protein; Provisional

Probab=90.30  E-value=1.4  Score=31.77  Aligned_cols=50  Identities=12%  Similarity=0.053  Sum_probs=32.3

Q ss_pred             ChhHHHHhhCC----CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQG----HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G----~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|    ++|+|+|+.+...-       . +   +  +. ...-.++..++++++|+-+.
T Consensus        24 ~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-------~-~---~--~r-~~~l~~~~~~~L~~lg~~~~   77 (398)
T PRK06996         24 LALAGWLARRSATRALSIALIDAREPAAS-------A-N---D--PR-AIALSHGSRVLLETLGAWPA   77 (398)
T ss_pred             HHHHHHHhcCCCcCCceEEEecCCCCCcC-------C-C---C--ce-EEEecHHHHHHHHhCCCchh
Confidence            57899999987    47999999864320       0 0   0  00 01124677889999997543

>PLN02463 lycopene beta cyclase

Probab=90.18  E-value=0.21  Score=37.17  Aligned_cols=22  Identities=14%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      |++|..|+++|++|+|+|+++.
T Consensus        41 LalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         41 LAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             HHHHHHHHHCCCeEEEeccCcc
Confidence            5789999999999999999764

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=90.02  E-value=0.29  Score=36.04  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcC
Q 034688            3 TAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |||.++++|++|.++|.++.-+
T Consensus        18 AAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206          18 AAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             HHHHHHHcCCcEEEEEcccccC
Confidence            8999999999999999997655

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=90.00  E-value=0.27  Score=37.73  Aligned_cols=26  Identities=12%  Similarity=0.153  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+||....+|.
T Consensus        20 l~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958         20 MRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             HHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            57999999999999999999887763

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=89.79  E-value=0.31  Score=34.69  Aligned_cols=31  Identities=16%  Similarity=0.170  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFV   31 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~   31 (87)
                      |+||.++++++.+++|++....+||......
T Consensus        16 l~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492          16 LTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             HHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            6899999999999777777888888877655

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.68  E-value=0.3  Score=37.90  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |+||..++++|.+|+|+|+...+|
T Consensus        48 l~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         48 ASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             HHHHHHHHHcCCcEEEEecCCCCC
Confidence            579999999999999999987775

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.63  E-value=0.3  Score=37.51  Aligned_cols=27  Identities=15%  Similarity=0.145  Sum_probs=22.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|.+|+|+||....+|.+
T Consensus        25 l~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057         25 MRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             HHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            578999999999999999987766643

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=89.44  E-value=0.31  Score=37.63  Aligned_cols=27  Identities=11%  Similarity=0.073  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|.+|+|+||....||.+
T Consensus        42 l~AAi~Aa~~G~~V~lveK~~~~~g~t   68 (617)
T PTZ00139         42 LRAALGLVELGYKTACISKLFPTRSHT   68 (617)
T ss_pred             HHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence            579999999999999999998877743

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=89.26  E-value=0.34  Score=37.66  Aligned_cols=26  Identities=12%  Similarity=0.097  Sum_probs=23.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+||....||.
T Consensus        63 l~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         63 LRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             HHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            57999999999999999999887763

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.82  E-value=0.38  Score=36.98  Aligned_cols=26  Identities=4%  Similarity=0.019  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..+++.|.+|+|+||....+|.
T Consensus        25 l~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         25 LRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             HHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            57999999999999999998876663

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=88.76  E-value=0.34  Score=38.28  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=20.2

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~   23 (87)
                      |+||..|++.  |++|+|+|+++..
T Consensus        13 LaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255         13 LYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             HHHHHHHHHhCCCCeEEEEecCCCC
Confidence            5899999998  8999999998863

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.57  E-value=0.38  Score=36.66  Aligned_cols=27  Identities=11%  Similarity=0.131  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCC---CcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQG---HEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G---~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++|   .+|+|+||.+..||.+
T Consensus        18 l~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069         18 LRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             HHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            57999999998   8999999999887744

>PLN02815 L-aspartate oxidase

Probab=88.56  E-value=0.38  Score=37.13  Aligned_cols=25  Identities=20%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++| +|+|+|+.+..||.
T Consensus        42 l~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         42 LRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             HHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            57999999999 99999999998883

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=88.15  E-value=0.43  Score=32.73  Aligned_cols=24  Identities=21%  Similarity=0.152  Sum_probs=19.2

Q ss_pred             hhHHHHhhCC-CcEEEEeeCCCcCc
Q 034688            2 STAVELLDQG-HEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G-~~V~v~E~~~~~GG   25 (87)
                      .+|.+|+++| .+|+|+|+.+....
T Consensus        14 v~A~rLs~~~~~~VlvlEaG~~~~~   38 (296)
T PF00732_consen   14 VVASRLSEAGNKKVLVLEAGPRYPP   38 (296)
T ss_dssp             HHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred             HHHHHHhhCCCCcEEEEEccccCcc
Confidence            4689999997 79999999987553

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=88.07  E-value=0.41  Score=35.74  Aligned_cols=29  Identities=24%  Similarity=0.202  Sum_probs=25.5

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s   29 (87)
                      +++|++|++.+  ++|+|+|+.+.+|--..+
T Consensus        16 ~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~   46 (429)
T COG0579          16 AATAYELSEYEPDLSVALLEKEDGVAQESSS   46 (429)
T ss_pred             HHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence            47899999988  999999999999976655

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=88.04  E-value=0.37  Score=36.44  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=19.8

Q ss_pred             ChhHHHHhhC-C-CcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ-G-HEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~-G-~~V~v~E~~~~~G   24 (87)
                      +++|++|++. + .+|+|+|+.+.+|
T Consensus        58 ~a~A~~La~~~~~~~V~VlEk~~~~a   83 (497)
T PTZ00383         58 TALFYTLSKFTNLKKIALIERRSDFA   83 (497)
T ss_pred             HHHHHHHHhhCCCCEEEEEecCcchh
Confidence            4789999996 4 6999999997654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=88.00  E-value=0.44  Score=35.65  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC--------CcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS--------FIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~--------~~GG~~~   28 (87)
                      +.||..+++.|.+|+|+|+..        .+||-|-
T Consensus        15 ~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438        15 LAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            368999999999999999731        5899763

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=87.42  E-value=0.52  Score=36.76  Aligned_cols=26  Identities=12%  Similarity=0.169  Sum_probs=22.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++|.+|+|+|+.+..+|.
T Consensus        18 l~AAi~Aae~G~~VivleK~~~~~s~   43 (657)
T PRK08626         18 LRVAIAAAQRGLDTIVLSLVPAKRSH   43 (657)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence            57999999999999999998887653

>PRK08401 L-aspartate oxidase; Provisional

Probab=87.34  E-value=0.54  Score=34.90  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      |+||..++++|.+|+|+|+.+.
T Consensus        14 l~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401         14 LTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCC
Confidence            5799999999999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=87.34  E-value=0.47  Score=34.98  Aligned_cols=25  Identities=8%  Similarity=0.070  Sum_probs=21.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++ +|.+|+|+||.+..||.
T Consensus        17 l~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175         17 LYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             HHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            57888874 79999999999998875

>TIGR00551 nadB L-aspartate oxidase

Probab=87.27  E-value=0.55  Score=35.04  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..+++.|. |+|+||.+..||.
T Consensus        15 l~AA~~aa~~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551        15 LSAALALADQGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             HHHHHHHHhCCC-EEEEEccCCCCCc
Confidence            579999999997 9999999887774

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=87.08  E-value=0.45  Score=34.24  Aligned_cols=23  Identities=22%  Similarity=0.159  Sum_probs=20.6

Q ss_pred             ChhHHHH--hhCCCcEEEEeeCCCc
Q 034688            1 MSTAVEL--LDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L--~~~G~~V~v~E~~~~~   23 (87)
                      |++|++|  ++.|.+|+|+|+++..
T Consensus        12 lslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen   12 LSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             HHHHHHHHhcCCCCEEEEEcCCccc
Confidence            5789999  7789999999998887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=86.69  E-value=0.4  Score=34.71  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.6

Q ss_pred             hhHHHHhhCC------CcEEEEeeCCCcCce
Q 034688            2 STAVELLDQG------HEVDIYELRSFIGGK   26 (87)
Q Consensus         2 ~aA~~L~~~G------~~V~v~E~~~~~GG~   26 (87)
                      ++||+|++++      +.|+|||++...||-
T Consensus        24 ctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen   24 CTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             eeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            6899999987      899999999999983

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=86.61  E-value=0.52  Score=32.54  Aligned_cols=19  Identities=32%  Similarity=0.695  Sum_probs=16.5

Q ss_pred             HHHhhCCCcEEEEeeCCCcC
Q 034688            5 VELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         5 ~~L~~~G~~V~v~E~~~~~G   24 (87)
                      ++|+++|.+|+|+|+.. ++
T Consensus         1 ~~La~~G~~V~vle~~~-~~   19 (337)
T TIGR02352         1 WELAKRGHSVTLFDRDP-MG   19 (337)
T ss_pred             ChHHHCCCceEEEcCCC-CC
Confidence            57999999999999987 54

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=86.51  E-value=0.56  Score=35.81  Aligned_cols=26  Identities=15%  Similarity=0.132  Sum_probs=21.8

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++++  |.+|+|+||....||.
T Consensus        16 l~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945         16 CRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             HHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            5799999987  4899999999877763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=86.16  E-value=0.61  Score=34.98  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=18.0

Q ss_pred             HHHHhhCCCcEEEEeeCCCcCc
Q 034688            4 AVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         4 A~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+.|++.|++|+|+|+.+ +|.
T Consensus         1 ArdLa~rGl~V~llEk~d-~~~   21 (516)
T TIGR03377         1 MRDLALRGLRCILLEQGD-LAH   21 (516)
T ss_pred             ChhHHHCCCCEEEEeCCC-ccc
Confidence            689999999999999985 553

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07395 L-aspartate oxidase; Provisional

Probab=85.49  E-value=0.64  Score=35.48  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=21.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..++ +|.+|+|+||.+..||.
T Consensus        22 l~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395         22 LYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             HHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            57888886 59999999999988884

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.89  E-value=0.75  Score=34.80  Aligned_cols=26  Identities=27%  Similarity=0.353  Sum_probs=21.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC-cCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSF-IGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~-~GG~~   27 (87)
                      |+||..+ ++|.+|+|+||.+. .||..
T Consensus        20 l~AAi~A-~~G~~VilleK~~~~~gG~s   46 (543)
T PRK06263         20 ARAAIEA-ERGKNVVIVSKGLFGKSGCT   46 (543)
T ss_pred             HHHHHHH-hcCCCEEEEEccCCCCCccc
Confidence            5789998 89999999999875 55543

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=84.77  E-value=0.84  Score=34.63  Aligned_cols=28  Identities=11%  Similarity=0.031  Sum_probs=22.6

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~~   28 (87)
                      +|+|+.|++.  |.+|+|+|+.+.+|-...
T Consensus        19 ~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339         19 TTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             HHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            3789999998  899999999667775443

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=84.37  E-value=0.78  Score=29.30  Aligned_cols=25  Identities=32%  Similarity=0.211  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||.+|++.|++|+|+|+.+....
T Consensus        12 l~aA~~l~~~~~~v~ii~~~~~~~~   36 (201)
T PF07992_consen   12 LSAALELARPGAKVLIIEKSPGTPY   36 (201)
T ss_dssp             HHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeccccccc
Confidence            5799999999999999998886555

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=84.20  E-value=0.9  Score=35.07  Aligned_cols=25  Identities=20%  Similarity=0.065  Sum_probs=21.3

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG   25 (87)
                      |+||..++++  |.+|+|+||.+..++
T Consensus        24 l~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         24 CGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             HHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            5799999998  999999999886544

>PRK08071 L-aspartate oxidase; Provisional

Probab=83.89  E-value=0.85  Score=34.38  Aligned_cols=26  Identities=19%  Similarity=0.120  Sum_probs=22.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..+++ |.+|+|+|+.+..||.+
T Consensus        16 l~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071         16 LTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             HHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            578999876 89999999999888744

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=83.82  E-value=0.9  Score=34.85  Aligned_cols=27  Identities=4%  Similarity=0.080  Sum_probs=22.6

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++  |.+|+|+||....||.+
T Consensus        17 l~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231         17 LRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             HHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            5799999887  47999999998888744

>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes

Probab=83.76  E-value=0.82  Score=29.56  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=14.8

Q ss_pred             ChhHHHHhhCCCcEEE
Q 034688            1 MSTAVELLDQGHEVDI   16 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v   16 (87)
                      |++|++|+++|++|+|
T Consensus        42 l~~AR~L~~~G~~V~v   57 (169)
T PF03853_consen   42 LVAARHLANRGYNVTV   57 (169)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCeEEE
Confidence            5799999999999999

In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=83.68  E-value=0.94  Score=34.78  Aligned_cols=27  Identities=7%  Similarity=0.080  Sum_probs=22.9

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..++++  |.+|+|+||....||.+
T Consensus        16 l~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176        16 LRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             HHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            5789999886  58999999999888854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=82.78  E-value=1.1  Score=35.00  Aligned_cols=25  Identities=16%  Similarity=0.133  Sum_probs=21.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~GG   25 (87)
                      +.||+.+++.|.+|.++|+.. .+|+
T Consensus        17 ~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192         17 CEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             HHHHHHHHHcCCcEEEEecccccccc
Confidence            368999999999999999983 5654

>PRK02106 choline dehydrogenase; Validated

Probab=82.78  E-value=0.96  Score=34.30  Aligned_cols=21  Identities=19%  Similarity=0.022  Sum_probs=18.6

Q ss_pred             hhHHHHhh-CCCcEEEEeeCCC
Q 034688            2 STAVELLD-QGHEVDIYELRSF   22 (87)
Q Consensus         2 ~aA~~L~~-~G~~V~v~E~~~~   22 (87)
                      .+|.+|++ .|++|+|+|+.+.
T Consensus        19 vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106         19 VLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             HHHHHHHhCCCCeEEEecCCCc
Confidence            57899999 7999999999964

>PRK08275 putative oxidoreductase; Provisional

Probab=82.47  E-value=1.1  Score=33.99  Aligned_cols=25  Identities=12%  Similarity=0.066  Sum_probs=20.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG   25 (87)
                      |+||..++++  |.+|+|+||.+..+|
T Consensus        22 l~AAi~aa~~g~g~~VilveK~~~~~~   48 (554)
T PRK08275         22 PMAAIKAKERNPALRVLLLEKANVKRS   48 (554)
T ss_pred             HHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence            5799999886  789999999987433

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=82.12  E-value=1.6  Score=32.68  Aligned_cols=29  Identities=34%  Similarity=0.227  Sum_probs=23.2

Q ss_pred             hhHHHHhh--CCCcEEEEeeCCCcCceEEEE
Q 034688            2 STAVELLD--QGHEVDIYELRSFIGGKVASF   30 (87)
Q Consensus         2 ~aA~~L~~--~G~~V~v~E~~~~~GG~~~s~   30 (87)
                      .+|+.|.+  .+..|+|+|+.+.+.|..+.-
T Consensus        34 YtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   34 YTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             HHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            35566655  479999999999999999864

>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases

Probab=82.08  E-value=3.4  Score=23.84  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=24.5

Q ss_pred             HHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688            4 AVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI   40 (87)
Q Consensus         4 A~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~   40 (87)
                      ..+|.++|.++..-......|.+...+++++|..+|.
T Consensus        87 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl  123 (125)
T cd08352          87 VKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLEL  123 (125)
T ss_pred             HHHHHHcCCccccccccCCCceEEEEEECCCCCEEEe
Confidence            4567778987765334444555566677888888875

This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.

>PRK09077 L-aspartate oxidase; Provisional

Probab=81.78  E-value=1.3  Score=33.59  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||..+++. .+|+|+||....||.
T Consensus        21 l~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077         21 LSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             HHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            5789999886 899999999988874

>PLN02697 lycopene epsilon cyclase

Probab=81.45  E-value=1.3  Score=33.87  Aligned_cols=24  Identities=17%  Similarity=0.087  Sum_probs=20.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |++|..|++.|++|+|+|+.....
T Consensus       121 LalA~~Lak~Gl~V~LIe~~~p~~  144 (529)
T PLN02697        121 LALAAESAKLGLNVGLIGPDLPFT  144 (529)
T ss_pred             HHHHHHHHhCCCcEEEecCcccCC
Confidence            578999999999999999864443

>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase

Probab=80.37  E-value=6.7  Score=22.94  Aligned_cols=37  Identities=19%  Similarity=0.262  Sum_probs=24.7

Q ss_pred             HHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEee
Q 034688            4 AVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEI   40 (87)
Q Consensus         4 A~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~   40 (87)
                      ..+|.++|.++.-.+..... .|+...+++++|..+|.
T Consensus        79 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~  116 (122)
T cd07265          79 EARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMEL  116 (122)
T ss_pred             HHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEE
Confidence            44677889887644322233 36766778888998885

This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	4e-10
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	4e-07
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	5e-06
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	7e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	9e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	1e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-04
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	6e-04
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	8e-04
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	8e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 1  MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKV 59
          ++  + L   G H+  I E    +GGK  S     G   E+   +    Y+ +  +  + 
Sbjct: 19 LAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDRT 77

Query: 60 GADENLLMKDHTHKFVNKGGEI 81
          G   +        +F+++ GEI
Sbjct: 78 GDKVDG--PKLRREFLHEDGEI 97

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY--NNLFRLTKK 58
          +     L   GHE+ + E  + IGG+  +    +G  +               L  L + 
Sbjct: 13 LLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRI 71

Query: 59 VGADENLLMKD 69
          +GA   ++  +
Sbjct: 72 LGAKVEIVNSN 82

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.8 bits (97), Expect = 5e-06
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 1/81 (1%)

Query: 1   MSTAVELL-DQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKV 59
           +  A  L    G    I +     GG  ++ V   G   ++  HV F  Y        + 
Sbjct: 23  LGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEA 82

Query: 60  GADENLLMKDHTHKFVNKGGE 80
              E+         +V   G+
Sbjct: 83  LPKEDDWYTHQRISYVRCQGQ 103

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.4 bits (96), Expect = 7e-06
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 2  STAVELLDQGHE-VDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
            AV L + G++   +YE     GG   SF+ + G   ++  HV F  Y     +     
Sbjct: 23 GAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV 82

Query: 61 ADENLL 66
             N+L
Sbjct: 83 QGWNVL 88

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 38.0 bits (87), Expect = 9e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 2   STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVG 60
           + A +L   G +V + E R  +GG+VA+   K     ++   V  G   N +  ++K+V 
Sbjct: 292 AAARQLQSFGMDVTLLEARDRVGGRVAT-FRKGNYVADLGAMVVTGLGGNPMAVVSKQVN 350

Query: 61  ADENLLMKDHT 71
            +   + +   
Sbjct: 351 MELAKIKQKCP 361

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 2   STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVG 60
           + A +L   G +V + E R  +GG+VA+   K     ++   V  G   N +  ++K+V 
Sbjct: 121 AAARQLQSFGMDVTLLEARDRVGGRVAT-FRKGNYVADLGAMVVTGLGGNPMAVVSKQVN 179

Query: 61  ADENLLMKDHT 71
            +   + +   
Sbjct: 180 MELAKIKQKCP 190

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 36.5 bits (84), Expect = 3e-04
 Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 2  STAVEL--LDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKV 59
          + A           + + E    +GGKVA++  + G  IE     +    + L  L + +
Sbjct: 18 AAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIEAI 76

Query: 60 GADENLLMKDHTHKFVNKGG 79
          G  E L+  + +  F+   G
Sbjct: 77 GLGEKLVRNNTSQAFILDTG 96

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 35.7 bits (82), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 2  STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGA 61
          + A  L  +G +  + E  + +GG V +     G  +E   + F         L   +  
Sbjct: 30 AVAHHLRSRGTDAVLLESSARLGGAVGT-HALAGYLVEQGPNSFLDREPATRALAAALNL 88

Query: 62 DENLL 66
          +  + 
Sbjct: 89 EGRIR 93

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++ A  L   G  V + E R  +GG+  +     G  +EI           L  L  ++G
Sbjct: 18 LAAATALRKAGLSVAVIEARDRVGGRTWT-DTIDGAVLEIGGQWVSPDQTALISLLDELG 76

Query: 61 ADENLLMKDHTHKFVNKGGE 80
                 ++    +++  GE
Sbjct: 77 LKTFERYREGESVYISSAGE 96

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 2  STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGA 61
          + A +L   G  V ++E     GGK+ S V + G   +   +       ++  L   +G 
Sbjct: 27 AAAYKLKIHGLNVTVFEAEGKAGGKLRS-VSQDGLIWDEGANTMTESEGDVTFLIDSLGL 85

Query: 62 DENLLMKDHTHKFV 75
           E        +K  
Sbjct: 86 REKQQFPLSQNKRY 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.67
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.49
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.47
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.45
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.43
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.43
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.43
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.42
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.38
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.35
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.35
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.29
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.29
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.27
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.22
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.21
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.2
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.17
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.17
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.15
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.13
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.11
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.11
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.1
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.1
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.09
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.96
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.96
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.79
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.78
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.78
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.71
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.46
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.2
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.35
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.31
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	97.16
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.08
3dme_A	369	Conserved exported protein; structural genomics, P	96.88
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.76
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.76
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.7
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.62
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	96.61
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.6
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	96.57
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	96.56
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	96.56
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.55
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	96.52
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.49
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.46
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.43
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.43
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	96.4
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	96.4
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.36
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.35
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	96.31
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.31
4dna_A	463	Probable glutathione reductase; structural genomic	96.28
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	96.27
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.27
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.19
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	96.18
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.17
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.15
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.13
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.12
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	96.11
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.11
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	96.07
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.06
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	96.03
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	96.01
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	95.99
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.99
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.98
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.92
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.91
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	95.89
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	95.88
3r9u_A	315	Thioredoxin reductase; structural genomics, center	95.87
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	95.86
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	95.86
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.82
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	95.8
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	95.74
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	95.69
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	95.68
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	95.68
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	95.58
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.57
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.57
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.52
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.51
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.46
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.45
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	95.45
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	95.39
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.38
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.37
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	95.34
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.31
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.29
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.27
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.26
4fk1_A	304	Putative thioredoxin reductase; structural genomic	95.25
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	95.22
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	95.21
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.2
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	95.2
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.2
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	95.18
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.14
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.13
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.07
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.06
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.05
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	95.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.0
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	94.99
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	94.98
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	94.91
2bry_A	497	NEDD9 interacting protein with calponin homology a	94.9
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	94.9
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	94.87
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	94.87
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	94.85
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.82
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	94.78
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.78
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	94.7
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	94.66
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	94.66
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	94.62
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.61
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.6
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.49
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	94.42
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	94.41
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	94.37
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	94.32
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	94.31
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	94.17
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	94.15
3atr_A	453	Conserved archaeal protein; saturating double bond	94.13
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.98
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	93.66
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	93.54
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	93.42
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	93.4
2cul_A	232	Glucose-inhibited division protein A-related PROT	93.39
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	93.34
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	93.26
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	92.89
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.84
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.79
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	92.73
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.72
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.67
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	92.67
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.27
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	92.22
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	92.03
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	91.89
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.84
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	91.82
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	91.8
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	91.78
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	91.15
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	91.08
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	90.73
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	90.64
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	90.61
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	90.58
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	90.26
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	89.96
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	89.54
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	89.01
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	88.98
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	88.1
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	88.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	87.99
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	87.97
4g6x_A	155	Glyoxalase/bleomycin resistance protein/dioxygena;	87.96
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	87.38
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	86.45
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	86.24
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	86.21
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	86.09
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	86.08
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	85.8
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	85.75
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	84.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	84.52
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	84.27
3e5d_A	127	Putative glyoxalase I; structural genomics, joint	82.67
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	81.96
3g12_A	128	Putative lactoylglutathione lyase; glyoxalase, ble	81.06
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	81.04
2rbb_A	141	Glyoxalase/bleomycin resistance protein/dioxygena;	80.39
1jzt_A	246	Hypothetical 27.5 kDa protein in SPX19-GCR2 inter	80.05

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.67  E-value=5.1e-17  Score=116.54  Aligned_cols=83  Identities=18%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             ChhHHHHhh-CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc-eeeeCceeeEEccC
Q 034688            1 MSTAVELLD-QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN-LLMKDHTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~-l~~~~~~~~~~~~~   78 (87)
                      |+||++|++ .|++|+|||+++++||+++|+...+|+++|.|+|+|++.++++.+++++++.... +....+ ..+...+
T Consensus        23 LsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~~~~~~~~~~~~~-~~~i~~~  101 (513)
T 4gde_A           23 LGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQR-ISYVRCQ  101 (513)
T ss_dssp             HHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHHSCSGGGEEEEEC-CEEEEET
T ss_pred             HHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHhCCccceeEEecC-ceEEEEC
Confidence            689999987 5999999999999999999987678999999999999999999999999987543 222222 2233446


Q ss_pred             CeEEEE
Q 034688           79 GEIGGI   84 (87)
Q Consensus        79 g~~~~~   84 (87)
                      |++..+
T Consensus       102 g~~~~~  107 (513)
T 4gde_A          102 GQWVPY  107 (513)
T ss_dssp             TEEEES
T ss_pred             CeEeec
Confidence            665543

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.49  E-value=4.6e-14  Score=101.44  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=60.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK   68 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~   68 (87)
                      |+||+.|+++|++|+|+|+++++|||++|.+ .+|+.+|.|+|+++..+++++++++++|+.+.+.+.
T Consensus        52 l~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~~~~~  118 (495)
T 2vvm_A           52 LTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWREITRYKMHNALSPS  118 (495)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSHHHHHHHHHTTCTTCEEES
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccHHHHHHHHHcCCcceeecc
Confidence            6899999999999999999999999999987 468999999999998899999999999997655543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.47  E-value=8.1e-14  Score=99.53  Aligned_cols=81  Identities=17%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeC--ceeeEEccC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKD--HTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~--~~~~~~~~~   78 (87)
                      |+||+.|+++|++|+|+|+++++||+++|++. +|+.+|.|++++...++++.++++++|+.+.+.+..  ....+...+
T Consensus        29 l~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~-~g~~~~~g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~  107 (478)
T 2ivd_A           29 LAVAHHLRSRGTDAVLLESSARLGGAVGTHAL-AGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTR  107 (478)
T ss_dssp             HHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE-TTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEET
T ss_pred             HHHHHHHHHCCCCEEEEEcCCCCCceeeeecc-CCeeeecChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEEC
Confidence            68999999999999999999999999999874 689999999999988899999999999987655432  222333445


Q ss_pred             CeEE
Q 034688           79 GEIG   82 (87)
Q Consensus        79 g~~~   82 (87)
                      |+..
T Consensus       108 g~~~  111 (478)
T 2ivd_A          108 GRLR  111 (478)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            5543

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.45  E-value=5.2e-14  Score=99.63  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=67.5

Q ss_pred             ChhHHHHhhCC------CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeE
Q 034688            1 MSTAVELLDQG------HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKF   74 (87)
Q Consensus         1 L~aA~~L~~~G------~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~   74 (87)
                      |+||++|+++|      ++|+|||+++++||+++|... +|+.+|.|+|++...++++.++++++|+...+........+
T Consensus        18 LsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~   96 (470)
T 3i6d_A           18 LAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKK-DGYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSY   96 (470)
T ss_dssp             HHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECC-TTCCEESSCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEE
T ss_pred             HHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEecc-CCEEeccChhhhhhCCHHHHHHHHHcCCcceeecCCCCccE
Confidence            68999999999      999999999999999999874 68999999999999999999999999999876643223333


Q ss_pred             EccCCeEEE
Q 034688           75 VNKGGEIGG   83 (87)
Q Consensus        75 ~~~~g~~~~   83 (87)
                      ...+|++..
T Consensus        97 ~~~~g~~~~  105 (470)
T 3i6d_A           97 VLVNRTLHP  105 (470)
T ss_dssp             EECSSCEEE
T ss_pred             EEECCEEEE
Confidence            344555443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.43  E-value=2e-13  Score=97.99  Aligned_cols=80  Identities=18%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCC--Cceee--eCceeeEEc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGAD--ENLLM--KDHTHKFVN   76 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~--~~l~~--~~~~~~~~~   76 (87)
                      |+||++|+++|++|+||||++++||+++|++ .+|+.+|.|+|++... ..+.++++.+|..  +.+.+  ..+......
T Consensus        14 L~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~~~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~   91 (501)
T 4dgk_A           14 LALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVITDP-SAIEELFALAGKQLKEYVELLPVTPFYRLCW   91 (501)
T ss_dssp             HHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBSCT-HHHHHHHHTTTCCGGGTCCEEEESSSEEEEE
T ss_pred             HHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeecCc-hhHHHHHHHhcchhhhceeeEecCcceEEEc
Confidence            6899999999999999999999999999997 5799999999987543 3466788888754  22333  233333334


Q ss_pred             cCCeEE
Q 034688           77 KGGEIG   82 (87)
Q Consensus        77 ~~g~~~   82 (87)
                      .+|+..
T Consensus        92 ~~g~~~   97 (501)
T 4dgk_A           92 ESGKVF   97 (501)
T ss_dssp             TTSCEE
T ss_pred             CCCCEE
Confidence            555543

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.43  E-value=1.9e-13  Score=99.14  Aligned_cols=82  Identities=20%  Similarity=0.232  Sum_probs=66.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE   80 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~   80 (87)
                      |+||+.|+++|++|+|+|+++++||+++|.+...|+.+|.|++++...++.+.++++++|++....+.....++ ..+|+
T Consensus        17 L~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~-~~~g~   95 (520)
T 1s3e_A           17 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIH-HVKGK   95 (520)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEEECCCSSEEEE-EETTE
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCcceecccCCceEE-EECCE
Confidence            68999999999999999999999999999875448999999999998888899999999998654444333333 33444


Q ss_pred             EEE
Q 034688           81 IGG   83 (87)
Q Consensus        81 ~~~   83 (87)
                      ...
T Consensus        96 ~~~   98 (520)
T 1s3e_A           96 SYP   98 (520)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.43  E-value=2.2e-13  Score=98.01  Aligned_cols=81  Identities=17%  Similarity=0.257  Sum_probs=67.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCc-eeeEEccCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDH-THKFVNKGG   79 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~-~~~~~~~~g   79 (87)
                      |+||+.|+++|++|+|+|+++++||+++|.+ .+|+.+|.|+|++...++++.++++++|+.+.+.+... ...+...+|
T Consensus        26 l~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g  104 (504)
T 1sez_A           26 LAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNG  104 (504)
T ss_dssp             HHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSS
T ss_pred             HHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcHHHHHHHHHcCCcccceeccCCCceEEEECC
Confidence            6899999999999999999999999999987 46899999999999888999999999999876655432 223444556


Q ss_pred             eEE
Q 034688           80 EIG   82 (87)
Q Consensus        80 ~~~   82 (87)
                      +..
T Consensus       105 ~~~  107 (504)
T 1sez_A          105 TPV  107 (504)
T ss_dssp             SEE
T ss_pred             eEE
Confidence            544

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.42  E-value=2.1e-13  Score=97.20  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=67.0

Q ss_pred             ChhHHHHhhCCC--cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCC---ChHHHHHHHHcCCCCceeeeCce----
Q 034688            1 MSTAVELLDQGH--EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGC---YNNLFRLTKKVGADENLLMKDHT----   71 (87)
Q Consensus         1 L~aA~~L~~~G~--~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~---~~~~~~l~~~lg~~~~l~~~~~~----   71 (87)
                      |+||++|+++|+  +|+|||+++++||+++|....+|+++|.|++++...   ++++.++++++|+.+.+.+....    
T Consensus        15 LsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~   94 (477)
T 3nks_A           15 LAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAA   94 (477)
T ss_dssp             HHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHH
T ss_pred             HHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchh
Confidence            689999999999  999999999999999998766799999999998764   66799999999998776654321    


Q ss_pred             -eeEEccCCeEEE
Q 034688           72 -HKFVNKGGEIGG   83 (87)
Q Consensus        72 -~~~~~~~g~~~~   83 (87)
                       ..+.+.+|++..
T Consensus        95 ~~~~~~~~g~~~~  107 (477)
T 3nks_A           95 QNRFLYVGGALHA  107 (477)
T ss_dssp             HCEEEEETTEEEE
T ss_pred             cceEEEECCEEEE
Confidence             234445666543

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.38  E-value=1e-12  Score=93.30  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCe
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGE   80 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~   80 (87)
                      |+||++|+++|++|+|+|+++++||++.+... +|+.+|.|++++...++.+.++++++|+.....+.....++...+|+
T Consensus        18 l~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~   96 (453)
T 2yg5_A           18 LAAATALRKAGLSVAVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYISSAGE   96 (453)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE-TTEEEECSCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEECTTSC
T ss_pred             HHHHHHHHHCCCcEEEEECCCCCCCceecccc-CCceeccCCeEecCccHHHHHHHHHcCCcccccccCCCEEEEeCCCc
Confidence            68999999999999999999999999999875 68999999999988888899999999998655554444444444344


Q ss_pred             EE
Q 034688           81 IG   82 (87)
Q Consensus        81 ~~   82 (87)
                      ..
T Consensus        97 ~~   98 (453)
T 2yg5_A           97 RT   98 (453)
T ss_dssp             EE
T ss_pred             ee
Confidence            33

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.35  E-value=8.6e-13  Score=94.28  Aligned_cols=83  Identities=22%  Similarity=0.293  Sum_probs=68.9

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccC
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~   78 (87)
                      |+||++|+++|  ++|+|+|+++++||+++|... +|+.+|.|+|++...++++.++++++|+...+.+......+...+
T Consensus        17 l~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~-~g~~~~~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~   95 (475)
T 3lov_A           17 LAAAYYAERAFPDLNITLLEAGERLGGKVATYRE-DGFTIERGPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDT   95 (475)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECS-TTCCEESSCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEET
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCceeEEEee-CCEEEecCchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEEC
Confidence            68999999999  999999999999999999874 689999999999999999999999999998766542333344456


Q ss_pred             CeEEEE
Q 034688           79 GEIGGI   84 (87)
Q Consensus        79 g~~~~~   84 (87)
                      |++..+
T Consensus        96 g~~~~~  101 (475)
T 3lov_A           96 GGLHPI  101 (475)
T ss_dssp             TEEEEC
T ss_pred             CEEEEC
Confidence            665543

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.35  E-value=6.4e-13  Score=93.64  Aligned_cols=62  Identities=21%  Similarity=0.352  Sum_probs=57.3

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+||+.|+++| ++|+|+|+++++||+++|+. .+|+.+|.|++++...++++.++++++|+..
T Consensus        19 l~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~~   81 (424)
T 2b9w_A           19 LAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDRTGDKV   81 (424)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcHHHHHHHHHhCCcc
Confidence            68999999999 99999999999999999986 4689999999999888899999999999864

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.29  E-value=5.6e-12  Score=88.96  Aligned_cols=79  Identities=20%  Similarity=0.317  Sum_probs=62.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC--CChHHHHHHHHcCCCCceeeeCceeeEEccC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG--CYNNLFRLTKKVGADENLLMKDHTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~   78 (87)
                      |+||++|+++|++|+|+|+++++||+++++. .+|+.+|.|++.+..  .++.+.++++++|+...+........+.. +
T Consensus        13 LsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~-~   90 (421)
T 3nrn_A           13 LLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRILGAKVEIVNSNPKGKILW-E   90 (421)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTTSSHHHHHHHHHTCCCCEEECSSSCEEEE-T
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCCChHHHHHHHHhCCcceEEECCCCeEEEE-C
Confidence            6899999999999999999999999999987 469999999877654  45679999999999866555544333333 4


Q ss_pred             CeE
Q 034688           79 GEI   81 (87)
Q Consensus        79 g~~   81 (87)
                      |+.
T Consensus        91 g~~   93 (421)
T 3nrn_A           91 GKI   93 (421)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.29  E-value=3.6e-12  Score=90.43  Aligned_cols=62  Identities=19%  Similarity=0.283  Sum_probs=56.2

Q ss_pred             ChhHHHHhhC-CCcEEEEeeCCCcCceEEEEecc-CCeEE-eeeeEEEeCCChHHHHHHHHcCCC
Q 034688            1 MSTAVELLDQ-GHEVDIYELRSFIGGKVASFVCK-RGNHI-EISLHVFFGCYNNLFRLTKKVGAD   62 (87)
Q Consensus         1 L~aA~~L~~~-G~~V~v~E~~~~~GG~~~s~~~~-~g~~~-d~G~~~~~~~~~~~~~l~~~lg~~   62 (87)
                      |+||++|+++ |++|+|+|+++++||+++|.... +|..+ |.|+|+|+..+++++++++++|+.
T Consensus        20 l~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~g~~   84 (399)
T 1v0j_A           20 LTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQFTDF   84 (399)
T ss_dssp             HHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTTCCB
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHhhhh
Confidence            5899999999 99999999999999999998754 68877 599999998899999999999973

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.27  E-value=4e-12  Score=92.28  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=53.2

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCC-hHHHHHHHHcCC
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY-NNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg~   61 (87)
                      |+||+.|+++| ++|+|||+++++|||++|.+..+|+.+|.|+++++... ..+.+++.++++
T Consensus        21 L~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg~   83 (516)
T 1rsg_A           21 LKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLSL   83 (516)
T ss_dssp             HHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhCC
Confidence            68999999999 99999999999999999987546899999999998653 347778888876

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.22  E-value=9.3e-12  Score=87.47  Aligned_cols=68  Identities=22%  Similarity=0.354  Sum_probs=58.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC--CChHHHHHHHHcCCCCceeeeC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG--CYNNLFRLTKKVGADENLLMKD   69 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~lg~~~~l~~~~   69 (87)
                      |+||++|+++|++|+|+|+++++||+++++. .+|+.+|.|++++..  .++++.++++++|+...+.+..
T Consensus        13 LsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~   82 (425)
T 3ka7_A           13 LLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGPGGPLACFLKEVEASVNIVRSE   82 (425)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGGGSHHHHHHHHTTCCCCEEECC
T ss_pred             HHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCCccHHHHHHHHhCCCceEEecC
Confidence            6899999999999999999999999999986 569999999876653  4557899999999987666554

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.21  E-value=2.6e-11  Score=85.82  Aligned_cols=61  Identities=20%  Similarity=0.305  Sum_probs=55.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-CCeEE-eeeeEEEeCCChHHHHHHHHcCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-RGNHI-EISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-~g~~~-d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      |+||+.|+++|++|+|+|+++++||+++|.... +|..+ |.|+|+|+..++++.+++++++.
T Consensus        16 l~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~   78 (384)
T 2bi7_A           16 AVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE   78 (384)
T ss_dssp             HHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHhh
Confidence            579999999999999999999999999998754 57765 99999999999999999999986

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.20  E-value=1.9e-11  Score=87.62  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=64.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEE-eeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHI-EISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGG   79 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~-d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g   79 (87)
                      |+||+.|+++|++|+|+|+++++||++++..+.+|..+ |.|+|+|++.++.+.+++++++...  ...+  ..+.+.+|
T Consensus        42 l~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~g  117 (397)
T 3hdq_A           42 SVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWR--PYQH--RVLASVDG  117 (397)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTSCCEE--ECCC--BEEEEETT
T ss_pred             HHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHhhhcc--cccc--cceEEECC
Confidence            58999999999999999999999999999875567764 9999999999999999999999532  1122  23334577


Q ss_pred             eEEEEe
Q 034688           80 EIGGIV   85 (87)
Q Consensus        80 ~~~~~~   85 (87)
                      ++..+.
T Consensus       118 ~l~~lP  123 (397)
T 3hdq_A          118 QLLPIP  123 (397)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            776653

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.17  E-value=6.4e-11  Score=85.96  Aligned_cols=81  Identities=21%  Similarity=0.273  Sum_probs=63.6

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCC
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGG   79 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g   79 (87)
                      |+||++|+++| .+|+|+|+++++||+++++...+|+.+|.|+|+++..++.+.++++++. .+.......  .+...+|
T Consensus        22 l~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~-~~~~~~~~~--~~~~~~g   98 (484)
T 4dsg_A           22 LGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV-QGWNVLQRE--SWVWVRG   98 (484)
T ss_dssp             HHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHC-SCEEEEECC--CEEEETT
T ss_pred             HHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHh-hhhhhccCc--eEEEECC
Confidence            58999999998 7999999999999999997556799999999999999999999999985 332222222  2333466


Q ss_pred             eEEEE
Q 034688           80 EIGGI   84 (87)
Q Consensus        80 ~~~~~   84 (87)
                      ++..+
T Consensus        99 ~~~~~  103 (484)
T 4dsg_A           99 RWVPY  103 (484)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            66543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.17  E-value=3.5e-11  Score=85.77  Aligned_cols=65  Identities=23%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeC-CCcCceEEEEecc---------CCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELR-SFIGGKVASFVCK---------RGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~-~~~GG~~~s~~~~---------~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||+.|+++|++|+|||++ +++||++.|++..         .++.+|.|++++...++.+.++++++|+....
T Consensus        57 L~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~~~lGl~~~~  131 (376)
T 2e1m_A           57 LVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALIDKLGLKRRL  131 (376)
T ss_dssp             HHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHHHHcCCCcce
Confidence            68999999999999999999 9999999998732         47899999999988888999999999998654

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.15  E-value=2.7e-11  Score=85.36  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=56.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc--CCeEEeeeeEEEeCC-ChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK--RGNHIEISLHVFFGC-YNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~--~g~~~d~G~~~~~~~-~~~~~~l~~~lg~~~~   64 (87)
                      |+||+.|+++|++|+|+|+++++||+|.+....  .|..+|.|++++... ++++.++++++|++..
T Consensus        14 l~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~   80 (431)
T 3k7m_X           14 LKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYGIPTA   80 (431)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhCCeee
Confidence            589999999999999999999999999987532  188999999999887 8899999999999754

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.13  E-value=6.2e-11  Score=85.01  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=56.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc----------------CCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK----------------RGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~----------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |+||+.|+++|++|+|||+++++||++++.+..                +|..+|.|++++...+ .+.++++++|+...
T Consensus        24 l~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~g~~~~  102 (489)
T 2jae_A           24 LCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-ITLDYCRELGVEIQ  102 (489)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-THHHHHHHHTCCEE
T ss_pred             HHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-HHHHHHHHcCCceE
Confidence            689999999999999999999999999998753                5788999999998777 89999999999743

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.11  E-value=6.2e-11  Score=75.26  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=48.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKV   59 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l   59 (87)
                      |+||+.|+++|++|+||||++++||++++.+ ..+..+|+|++.+......+......+
T Consensus        15 L~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~~~   72 (336)
T 3kkj_A           15 LSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGAQYFTARDRRFATAVKQW   72 (336)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSCCCBCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCccccccCcHHHHHHHHHH
Confidence            6899999999999999999999999999876 458899999998877766655554443

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.11  E-value=9.5e-11  Score=84.21  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=57.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEec-cCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVC-KRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+||+.|+++|++|+|+|+++++||++.+++. .+|+.+|.|++++...++.+.++++++|+..
T Consensus        46 l~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~  109 (498)
T 2iid_A           46 LSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL  109 (498)
T ss_dssp             HHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999864 3588999999999888888999999999874

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.10  E-value=8.1e-11  Score=84.24  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=65.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEe-cc-------------------CCeEEeeeeEEEeCCChHHHHHHHHcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFV-CK-------------------RGNHIEISLHVFFGCYNNLFRLTKKVG   60 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~-~~-------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg   60 (87)
                      |+||+.|+++|++|+|+|+++++||+++|+. ..                   .++.+|.|+++++... .+.++++++|
T Consensus        19 l~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~~-~l~~ll~~lg   97 (433)
T 1d5t_A           19 CILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANG-QLVKMLLYTE   97 (433)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETTS-HHHHHHHHHT
T ss_pred             HHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeeccc-hHHHHHHHcC
Confidence            5799999999999999999999999999987 10                   3578999999887654 7899999999


Q ss_pred             CCCceeeeCceeeEEccCCeEEE
Q 034688           61 ADENLLMKDHTHKFVNKGGEIGG   83 (87)
Q Consensus        61 ~~~~l~~~~~~~~~~~~~g~~~~   83 (87)
                      +.+.+.+......|...+|+...
T Consensus        98 l~~~l~~~~~~~~~~~~~g~~~~  120 (433)
T 1d5t_A           98 VTRYLDFKVVEGSFVYKGGKIYK  120 (433)
T ss_dssp             GGGGCCEEECCEEEEEETTEEEE
T ss_pred             CccceEEEEeCceEEeeCCEEEE
Confidence            98766665544455566776543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.10  E-value=4.9e-11  Score=83.87  Aligned_cols=61  Identities=23%  Similarity=0.301  Sum_probs=55.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEe-eeeEEEeCCChHHHHHHHHcCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIE-ISLHVFFGCYNNLFRLTKKVGAD   62 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d-~G~~~~~~~~~~~~~l~~~lg~~   62 (87)
                      |+||++|+++|++|+|+|+++++||++++... +|..+| .|+|+|+..++++++++++++..
T Consensus        14 l~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~   75 (367)
T 1i8t_A           14 AVCANELKKLNKKVLVIEKRNHIGGNAYTEDC-EGIQIHKYGAHIFHTNDKYIWDYVNDLVEF   75 (367)
T ss_dssp             HHHHHHHGGGTCCEEEECSSSSSSGGGCEEEE-TTEEEETTSCCCEEESCHHHHHHHHTTSCB
T ss_pred             HHHHHHHHhCCCcEEEEecCCCCCcceEeecc-CCceeeccCCceecCCCHHHHHHHHHhhhh
Confidence            58999999999999999999999999999874 688885 99999998889999999998863

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.09  E-value=1.5e-11  Score=88.40  Aligned_cols=82  Identities=16%  Similarity=0.151  Sum_probs=59.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCC-----------------------eEEeeeeEEEeCCChHHHHHHH
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRG-----------------------NHIEISLHVFFGCYNNLFRLTK   57 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g-----------------------~~~d~G~~~~~~~~~~~~~l~~   57 (87)
                      |+||+.|+++|++|+|+|+++++||+++|+...++                       +.+|+++++++. ...+.++++
T Consensus        24 L~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l~~-~~~l~~ll~  102 (453)
T 2bcg_G           24 CILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMA-NGELTNILI  102 (453)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEET-TSHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccccceeec-CcHHHHHHH
Confidence            68999999999999999999999999999753210                       123344444333 457999999


Q ss_pred             HcCCCCceeeeCceeeEEccCCeEEE
Q 034688           58 KVGADENLLMKDHTHKFVNKGGEIGG   83 (87)
Q Consensus        58 ~lg~~~~l~~~~~~~~~~~~~g~~~~   83 (87)
                      ++|+.+.+.+......|.+.+|+...
T Consensus       103 ~lg~~~~l~~~~~~~~~~~~~g~~~~  128 (453)
T 2bcg_G          103 HTDVTRYVDFKQVSGSYVFKQGKIYK  128 (453)
T ss_dssp             HHTGGGTCCEEECCCEEEEETTEEEE
T ss_pred             hcCCccceEEEEccceeEEeCCeEEE
Confidence            99998766665544455556776543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.96  E-value=4.6e-10  Score=82.12  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=64.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-------------------CCeEEeeeeEEEeCCChHHHHHHHHcCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-------------------RGNHIEISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      +++|+.|+++|++|+|+|+++++||++.++...                   .++.+|++++.++.. .++.+++.+.++
T Consensus        33 ~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~~-g~L~~lL~~~gv  111 (475)
T 3p1w_A           33 CILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVG-GNLVKILKKTRV  111 (475)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEETT-SHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeecC-cHHHHHHHHCCc
Confidence            478999999999999999999999999998532                   146899999977654 489999999999


Q ss_pred             CCceeeeCceeeEEcc
Q 034688           62 DENLLMKDHTHKFVNK   77 (87)
Q Consensus        62 ~~~l~~~~~~~~~~~~   77 (87)
                      .+.++|......|.+.
T Consensus       112 ~~ylef~~~~~~y~~~  127 (475)
T 3p1w_A          112 TNYLEWLVVEGSYVYQ  127 (475)
T ss_dssp             GGGSCEEECSEEEEEE
T ss_pred             hheeEEEecCcceEEe
Confidence            9999998877776654

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.96  E-value=5.3e-10  Score=80.16  Aligned_cols=63  Identities=21%  Similarity=0.298  Sum_probs=55.0

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeC----CChHHHHHHHH-cCCCCc
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFG----CYNNLFRLTKK-VGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~-lg~~~~   64 (87)
                      |+||+.|+++|+ +|+|+|+++++||++++.. ..|+.+|.|++++.+    ....+.+++++ +|+...
T Consensus        17 ~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~~   85 (472)
T 1b37_A           17 ISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNF   85 (472)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCEE
T ss_pred             HHHHHHHHhcCCCceEEEeCCCCCCCceeecc-cCCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCcee
Confidence            579999999999 8999999999999999986 468999999999983    34458999999 899764

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.79  E-value=5.2e-09  Score=80.98  Aligned_cols=62  Identities=27%  Similarity=0.403  Sum_probs=53.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH-HHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~   63 (87)
                      |+||+.|+++|++|+|||+++++||++.+++ ..++++|.|++++++...+ +..+.+++|+..
T Consensus       291 l~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~l~~~lg~~~  353 (852)
T 2xag_A          291 LAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQVNMEL  353 (852)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSCTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHCCCcEEEEEecCcCCCceeeec-ccccchhcCceEecCCCCchHHHHHHHhCCch
Confidence            6899999999999999999999999999987 4689999999998875433 667888999853

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.78  E-value=5e-09  Score=78.66  Aligned_cols=62  Identities=27%  Similarity=0.403  Sum_probs=53.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH-HHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~   63 (87)
                      |+||+.|+++|++|+|||+++++||++++++ ..++++|.|++++.+...+ +..+.++++++.
T Consensus       120 l~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~l~~~l~~~~  182 (662)
T 2z3y_A          120 LAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQVNMEL  182 (662)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCcccccc-ccCchhhcCcEEEeCCCCchHHHHHHHhCcch
Confidence            5899999999999999999999999999987 4689999999998775443 567889999853

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.78  E-value=8.7e-09  Score=78.67  Aligned_cols=62  Identities=18%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             ChhHHHHhhCC--------CcEEEEeeCC-Cc----------------CceEEEEecc------CCeEEeeeeEEEeCCC
Q 034688            1 MSTAVELLDQG--------HEVDIYELRS-FI----------------GGKVASFVCK------RGNHIEISLHVFFGCY   49 (87)
Q Consensus         1 L~aA~~L~~~G--------~~V~v~E~~~-~~----------------GG~~~s~~~~------~g~~~d~G~~~~~~~~   49 (87)
                      |+||+.|+++|        ++|+|||+++ ++                ||++.+....      ++..+|.|+++|...+
T Consensus        69 L~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~~e~G~~~~~~~~  148 (721)
T 3ayj_A           69 IAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIA  148 (721)
T ss_dssp             HHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEEEECSCCCEETTC
T ss_pred             HHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcEEecCCEEecCcc
Confidence            68999999998        9999999999 99                9999998652      4689999999999988


Q ss_pred             hHHHHHHHHc-CCC
Q 034688           50 NNLFRLTKKV-GAD   62 (87)
Q Consensus        50 ~~~~~l~~~l-g~~   62 (87)
                      +.++++++++ |+.
T Consensus       149 ~~~~~~~~~l~gl~  162 (721)
T 3ayj_A          149 GLTWHYASAAFGDA  162 (721)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCc
Confidence            8999999999 996

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.71  E-value=7.4e-09  Score=79.40  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=56.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH-HHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~lg~~~~   64 (87)
                      |+||+.|+++|++|+|+|+++++||++.|.+..+|..+|.|++++++...+ +..+++++|+...
T Consensus       349 l~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~  413 (776)
T 4gut_A          349 LAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQLGISMH  413 (776)
T ss_dssp             HHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHHHTCCCE
T ss_pred             HHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHHhCCccc
Confidence            589999999999999999999999999998766689999999999876544 7889999999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.20  E-value=7.4e-07  Score=61.12  Aligned_cols=59  Identities=8%  Similarity=0.052  Sum_probs=45.6

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCCcCceEEEEecc--CCeEEeeeeEEEeCCCh---HHHHHHHHc
Q 034688            1 MSTAVELLD---QGHEVDIYELRSFIGGKVASFVCK--RGNHIEISLHVFFGCYN---NLFRLTKKV   59 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~~GG~~~s~~~~--~g~~~d~G~~~~~~~~~---~~~~l~~~l   59 (87)
                      |+||+.|++   +|++|+|||+++.+||++.+.+..  .+..+|+|++++.....   .+.++++++
T Consensus        14 l~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   80 (342)
T 3qj4_A           14 SLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDEL   80 (342)
T ss_dssp             HHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHH
T ss_pred             HHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHH
Confidence            589999999   999999999999999999987632  25679999998765443   344444444

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.35  E-value=0.00027  Score=53.59  Aligned_cols=48  Identities=15%  Similarity=0.156  Sum_probs=37.5

Q ss_pred             CeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCeEEE
Q 034688           35 GNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGG   83 (87)
Q Consensus        35 g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~~~~   83 (87)
                      +|.+|+|++.++... .+.++|.++|+.+.+.|+.....|...+|++..
T Consensus       223 ~f~~DL~PklL~~~g-~lv~LL~~sgV~~yLEFk~v~~~y~~~~G~~~~  270 (650)
T 1vg0_A          223 RFNIDLVSKLLYSRG-LLIDLLIKSNVSRYAEFKNITRILAFREGTVEQ  270 (650)
T ss_dssp             GCCEESSCCCEESSS-HHHHHHHHHTGGGGCCEEECCEEEEESSSSEEE
T ss_pred             CeEEeeCCeeeeCCc-HHHHHHHHcCCcceeeEEEccceEEecCCCEeE
Confidence            456777787777654 588999999999999998877778888887543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.31  E-value=5.5e-05  Score=51.70  Aligned_cols=28  Identities=25%  Similarity=0.153  Sum_probs=25.1

Q ss_pred             ChhHHHHhh--CCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLD--QGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~--~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||++|++  .|++|+|+|+++.+||.+.
T Consensus        78 lsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           78 LSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             HHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             HHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            689999975  5999999999999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=97.16  E-value=0.00019  Score=49.00  Aligned_cols=25  Identities=24%  Similarity=0.165  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|++|+|+|+++.+|.
T Consensus        17 l~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A           17 STAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            5899999999999999999988764

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.08  E-value=0.0011  Score=46.17  Aligned_cols=48  Identities=25%  Similarity=0.331  Sum_probs=34.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|+.|+++|++|+|+|+.+.++...++            .. +   .++..++++++|+.+.
T Consensus        36 l~~A~~La~~G~~V~v~E~~~~~~~~~~~------------~~-l---~~~~~~~l~~lg~~~~   83 (407)
T 3rp8_A           36 LSAAVALKQSGIDCDVYEAVKEIKPVGAA------------IS-V---WPNGVKCMAHLGMGDI   83 (407)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSCC----CE------------EE-E---CHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCCcCee------------EE-E---CHHHHHHHHHCCCHHH
Confidence            57999999999999999999876432111            11 1   2678889999988543

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=96.88  E-value=0.00047  Score=46.71  Aligned_cols=27  Identities=33%  Similarity=0.334  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++|++|+|+|+++.+|+.+
T Consensus        17 l~~A~~La~~G~~V~vlE~~~~~~~~~   43 (369)
T 3dme_A           17 LAIARALAAGGHEVLVAEAAEGIGTGT   43 (369)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSSCST
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCCcc
Confidence            589999999999999999998776543

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.76  E-value=0.0063  Score=42.29  Aligned_cols=47  Identities=26%  Similarity=0.314  Sum_probs=34.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc-CceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI-GGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~-GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|+++|++|+|+|+++.+ .++...        +        .-.++..++++++|+.+
T Consensus        18 l~~A~~L~~~G~~v~v~E~~~~~~~~~~~g--------~--------~l~~~~~~~l~~~g~~~   65 (397)
T 2vou_A           18 LTAALMLRDAGVDVDVYERSPQPLSGFGTG--------I--------VVQPELVHYLLEQGVEL   65 (397)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSCCCCSCE--------E--------ECCHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCccccc--------c--------ccChhHHHHHHHcCCcc
Confidence            58999999999999999998874 221111        1        11478899999999865

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.76  E-value=0.0021  Score=44.08  Aligned_cols=49  Identities=24%  Similarity=0.185  Sum_probs=34.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|+++|++|+|||+++.+.-+.      .|.-+    + +   .++..+.++++|+.+
T Consensus        14 l~~A~~L~~~G~~v~v~Er~~~~~~~~------~G~~i----~-l---~~~~~~~L~~lg~~~   62 (412)
T 4hb9_A           14 TCLAHGLRKHGIKVTIYERNSAASSIL------PGYGI----H-I---NSFGKQALQECLPAE   62 (412)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCSSCSSC------CCCEE----E-E---CHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCcCC------CceEE----e-e---CHHHHHHHHHcCChH
Confidence            589999999999999999987664311      12111    1 1   267788888888754

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.70  E-value=0.00068  Score=45.52  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.+|++.|++|+|+|+ +.+||.|.
T Consensus        19 l~aA~~l~~~g~~V~liE~-~~~gG~~~   45 (312)
T 4gcm_A           19 MTAAVYASRANLKTVMIER-GIPGGQMA   45 (312)
T ss_dssp             HHHHHHHHHTTCCEEEEES-SCTTGGGG
T ss_pred             HHHHHHHHHCCCCEEEEec-CCCCCeee
Confidence            5799999999999999997 56888774

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.62  E-value=0.00096  Score=44.61  Aligned_cols=28  Identities=25%  Similarity=0.182  Sum_probs=25.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||...
T Consensus        20 l~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A           20 LFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            5799999999999999999999999874

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=96.61  E-value=0.0011  Score=46.60  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++|+ +|+|+|+.+..||..
T Consensus        19 lsaA~~La~~G~~~V~vlE~~~~~~~~~   46 (438)
T 3dje_A           19 TSTALHLARRGYTNVTVLDPYPVPSAIS   46 (438)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSCSSCTTC
T ss_pred             HHHHHHHHHcCCCcEEEEeCCCCCCCCc
Confidence            589999999999 999999999988754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.0007  Score=48.69  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        38 l~aA~~la~~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           38 YVCAIKAAQLGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            5799999999999999999999999653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=96.57  E-value=0.002  Score=46.81  Aligned_cols=49  Identities=20%  Similarity=0.142  Sum_probs=36.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+.++...+      +       ..+   .++.+++++++|+.+.+
T Consensus        25 l~~A~~La~~G~~v~vlE~~~~~~~~~r------~-------~~l---~~~~~~~l~~lGl~~~~   73 (499)
T 2qa2_A           25 LMLAGELRLGGVDVMVLEQLPQRTGESR------G-------LGF---TARTMEVFDQRGILPAF   73 (499)
T ss_dssp             HHHHHHHHHTTCCEEEEESCSSCCCCCC------S-------EEE---CHHHHHHHHHTTCGGGG
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCc------e-------eEE---CHHHHHHHHHCCCHHHH
Confidence            5899999999999999999987753211      1       111   36788999999987654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=96.56  E-value=0.00095  Score=45.52  Aligned_cols=26  Identities=23%  Similarity=0.027  Sum_probs=22.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+ +|++|+|+|+.+.+|+.+
T Consensus        22 ls~A~~La-~G~~V~vlE~~~~~g~~a   47 (381)
T 3nyc_A           22 ASTGYWLS-AHGRVVVLEREAQPGYHS   47 (381)
T ss_dssp             HHHHHHHT-TTSCEEEECSSSSTTSSG
T ss_pred             HHHHHHHh-CCCCEEEEECCCCccccc
Confidence            58999999 699999999998887543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=96.56  E-value=0.0017  Score=47.12  Aligned_cols=49  Identities=24%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+.+.++...+      +       ..+   .++.+++++++|+.+.+
T Consensus        24 l~~A~~La~~G~~v~vlE~~~~~~~~~r------~-------~~l---~~~~~~~l~~lGl~~~~   72 (500)
T 2qa1_A           24 MMLAGELRLAGVEVVVLERLVERTGESR------G-------LGF---TARTMEVFDQRGILPRF   72 (500)
T ss_dssp             HHHHHHHHHTTCCEEEEESCCC-CCCCC------S-------EEE---CHHHHHHHHTTTCGGGG
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCCCC------c-------ceE---CHHHHHHHHHCCCHHHH
Confidence            5899999999999999999987753211      1       111   36788899999987654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.55  E-value=0.00079  Score=48.56  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|||+.+.+||..
T Consensus       135 l~aA~~L~~~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          135 LAAAEELRAKGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             HHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            589999999999999999999999965

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=96.52  E-value=0.0034  Score=43.86  Aligned_cols=47  Identities=21%  Similarity=0.165  Sum_probs=34.8

Q ss_pred             ChhHHHHhhCCCc-EEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHE-VDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~-V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|+++|++ |+|+|+++.++.....        +    .    -.++..++++++|+.+
T Consensus        17 l~~A~~L~~~G~~~v~v~E~~~~~~~~g~g--------~----~----l~~~~~~~l~~lg~~~   64 (410)
T 3c96_A           17 LSCALALHQAGIGKVTLLESSSEIRPLGVG--------I----N----IQPAAVEALAELGLGP   64 (410)
T ss_dssp             HHHHHHHHHTTCSEEEEEESSSSCCCCSCE--------E----E----ECHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCCCeEEEEECCCCcccceeE--------E----E----EChHHHHHHHHCCChH
Confidence            5799999999999 9999999887542111        1    1    1367788888888754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.49  E-value=0.0014  Score=44.09  Aligned_cols=28  Identities=21%  Similarity=0.184  Sum_probs=25.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|+|+++.+||.+.
T Consensus        16 l~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A           16 LSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             HHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            5799999999999999999999999754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.46  E-value=0.00085  Score=47.99  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=25.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        17 l~aA~~l~~~G~~V~liEk~~~~GG~~~   44 (466)
T 3l8k_A           17 YHGAFRLAKAKYNVLMADPKGELGGNCL   44 (466)
T ss_dssp             HHHHHHHHHTTCCEEEECTTSSSSHHHH
T ss_pred             HHHHHHHHhCCCeEEEEECCCCCCCccc
Confidence            5799999999999999999999999864

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.43  E-value=0.0034  Score=43.35  Aligned_cols=47  Identities=23%  Similarity=0.344  Sum_probs=34.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|..|+++|++|+|+|+++.+++....            .. +   .++..++++++|+.+
T Consensus        24 l~~A~~L~~~G~~v~viE~~~~~~~~~~~------------~~-l---~~~~~~~l~~~g~~~   70 (379)
T 3alj_A           24 LTAAIALKQNGWDVRLHEKSSELRAFGAG------------IY-L---WHNGLRVLEGLGALD   70 (379)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSCCCCSSE------------EE-E---EHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCCCCce------------EE-e---CccHHHHHHHcCCHH
Confidence            57999999999999999999888652211            11 1   156777888888743

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.43  E-value=0.0011  Score=44.68  Aligned_cols=28  Identities=11%  Similarity=0.100  Sum_probs=25.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||.+.
T Consensus        18 l~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A           18 LFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            5799999999999999999999999774

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=96.40  E-value=0.0016  Score=47.24  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=25.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|.+|+|+||.+.+||..
T Consensus        54 l~AA~~aa~~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           54 VAASIEAARAGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            589999999999999999999999865

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.37  E-value=0.0018  Score=44.76  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |+||++|+++|++|+|+|+.+..+
T Consensus        17 l~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A           17 LATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             HHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCC
Confidence            589999999999999999988765

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.36  E-value=0.0011  Score=47.57  Aligned_cols=27  Identities=30%  Similarity=0.220  Sum_probs=24.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|+|+ +.+||.|.
T Consensus        39 l~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           39 VRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             HHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             HHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            5899999999999999999 78999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.35  E-value=0.0012  Score=45.15  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=25.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.+.
T Consensus        27 l~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           27 IFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            5799999999999999999999999874

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=96.31  E-value=0.0019  Score=44.06  Aligned_cols=25  Identities=8%  Similarity=-0.101  Sum_probs=22.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|++|+++|++|+|+|+.+..+|
T Consensus        15 l~~A~~La~~G~~V~vle~~~~~~~   39 (372)
T 2uzz_A           15 AAAGYYATRAGLNVLMTDAHMPPHQ   39 (372)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCSSSS
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCC
Confidence            5899999999999999999987754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.31  E-value=0.0013  Score=46.89  Aligned_cols=28  Identities=18%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        15 l~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A           15 YVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            4799999999999999999999999764

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.0012  Score=47.06  Aligned_cols=26  Identities=23%  Similarity=0.194  Sum_probs=23.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|+++|++|+|+|+ +.+||.|
T Consensus        18 l~aA~~la~~G~~V~liEk-~~~GG~~   43 (463)
T 4dna_A           18 VRSGRLAAALGKKVAIAEE-FRYGGTC   43 (463)
T ss_dssp             HHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred             HHHHHHHHhCCCEEEEEeC-CCCCCcc
Confidence            5799999999999999999 8899965

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.0014  Score=46.81  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=24.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+|+.+.+|+++
T Consensus        40 l~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           40 MMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            579999999999999999999987643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.27  E-value=0.0013  Score=44.10  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=25.1

Q ss_pred             ChhHHHHhhCCCcEEEEee----CCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYEL----RSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~----~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|+|+    ++.+||.+..
T Consensus        35 l~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           35 HTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             HHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            5899999999999999999    5589997653

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.19  E-value=0.0022  Score=48.13  Aligned_cols=26  Identities=23%  Similarity=0.197  Sum_probs=23.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|+++|++|+|+|+.+.+|+.
T Consensus       277 lsaA~~La~~G~~V~vlEk~~~~g~g  302 (689)
T 3pvc_A          277 ALTALALQRRGAVVTLYCADAQPAQG  302 (689)
T ss_dssp             HHHHHHHHTTTCCEEEEESSSSTTCS
T ss_pred             HHHHHHHHHCCCcEEEEeCCCccccc
Confidence            58999999999999999999888753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=96.18  E-value=0.0024  Score=43.70  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|++|+|+|+....+|
T Consensus        30 l~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           30 SAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            5799999999999999999876554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.17  E-value=0.0023  Score=47.83  Aligned_cols=25  Identities=20%  Similarity=0.220  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|++|+|+|+.+.+|+
T Consensus       285 lsaA~~La~~G~~V~vlEk~~~~g~  309 (676)
T 3ps9_A          285 ALLSLALLRRGWQVTLYCADEAPAL  309 (676)
T ss_dssp             HHHHHHHHTTTCEEEEEESSSSSSC
T ss_pred             HHHHHHHHHCCCeEEEEeCCCcccc
Confidence            5899999999999999999888774

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.15  E-value=0.0022  Score=42.60  Aligned_cols=26  Identities=12%  Similarity=0.027  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|+|++  +||.+.
T Consensus        28 l~aA~~l~~~g~~v~lie~~--~gg~~~   53 (323)
T 3f8d_A           28 YGAALYSARYMLKTLVIGET--PGGQLT   53 (323)
T ss_dssp             HHHHHHHHHTTCCEEEEESS--TTGGGG
T ss_pred             HHHHHHHHHCCCcEEEEecc--CCCeec
Confidence            57999999999999999998  899764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.13  E-value=0.0019  Score=46.93  Aligned_cols=28  Identities=21%  Similarity=0.229  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||.|.
T Consensus        56 l~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           56 RFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            5799999999999999999998999763

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.12  E-value=0.0028  Score=43.40  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=21.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |++|++|+++|++|+|+|+.+..+
T Consensus        16 l~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A           16 MAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCC
Confidence            579999999999999999988766

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=96.11  E-value=0.002  Score=46.04  Aligned_cols=28  Identities=18%  Similarity=0.248  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        19 l~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A           19 YVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             HHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            4799999999999999999999999753

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.11  E-value=0.002  Score=48.48  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|+|+++++||.+..
T Consensus       404 l~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          404 LEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             HHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             HHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            58999999999999999999999997653

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=96.07  E-value=0.003  Score=42.38  Aligned_cols=26  Identities=31%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             ChhHHHHhhC-CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ-GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~-G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|++. |.+|+|+|+.+.+||.
T Consensus        52 l~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           52 LSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             HHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             HHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            5799999997 9999999999999874

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.06  E-value=0.0021  Score=45.87  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|++|+|+|+++.+||.|
T Consensus        18 l~aA~~l~~~G~~V~liE~~~~~GG~~   44 (478)
T 1v59_A           18 YVAAIKAAQLGFNTACVEKRGKLGGTC   44 (478)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSHHH
T ss_pred             HHHHHHHHHCCCeEEEEecCCCcCCcc
Confidence            579999999999999999999999965

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.04  E-value=0.0022  Score=45.59  Aligned_cols=28  Identities=21%  Similarity=0.344  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        14 l~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A           14 YVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            4789999999999999999999999753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=96.03  E-value=0.0072  Score=41.84  Aligned_cols=47  Identities=19%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|+.|+++|++|+|+|+++.+..     . ..+.      . +   .++..++++++|+.+
T Consensus        19 l~~A~~L~~~G~~V~viE~~~~~~~-----~-~~~~------~-l---~~~~~~~l~~~g~~~   65 (399)
T 2x3n_A           19 AMLAYLLGRQGHRVVVVEQARRERA-----I-NGAD------L-L---KPAGIRVVEAAGLLA   65 (399)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCCC---------CCCC------E-E---CHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCc-----c-Ccee------e-E---CchHHHHHHHcCcHH
Confidence            5799999999999999999876511     0 0011      1 1   256677888888754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=96.01  E-value=0.0033  Score=46.16  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+|+.+.+||..
T Consensus       139 l~aA~~la~~G~~V~vlEk~~~~gg~s  165 (571)
T 1y0p_A          139 FSAAISATDSGAKVILIEKEPVIGGNA  165 (571)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            589999999999999999999998853

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=95.99  E-value=0.0053  Score=44.95  Aligned_cols=48  Identities=13%  Similarity=0.025  Sum_probs=35.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|++|+|+|+.+.++...+      +.       .+   .++.+++++++|+.+.
T Consensus        39 l~~A~~La~~G~~V~vlEr~~~~~~~~~------~~-------~l---~~~~~~~l~~lGl~~~   86 (549)
T 2r0c_A           39 MALALDLAHRQVGHLVVEQTDGTITHPR------VG-------TI---GPRSMELFRRWGVAKQ   86 (549)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCSCCSSCC------CC-------EE---CHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCCCc------ee-------ee---CHHHHHHHHHcCChHH
Confidence            5899999999999999999988764221      11       11   2677888888887643

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.99  E-value=0.0024  Score=48.46  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||+.|+++|++|+|+|+++.+||.+..
T Consensus       402 l~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          402 SEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            57999999999999999999999997753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.98  E-value=0.0022  Score=45.69  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=25.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.|.
T Consensus        19 l~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A           19 YVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            4789999999999999999999999763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.97  E-value=0.0031  Score=42.38  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=24.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.+.
T Consensus        21 l~aA~~l~~~g~~v~lie~~-~~gg~~~   47 (325)
T 2q7v_A           21 LTAAIYTGRAQLSTLILEKG-MPGGQIA   47 (325)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             HHHHHHHHHcCCcEEEEeCC-CCCcccc
Confidence            57999999999999999999 7999775

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.92  E-value=0.0034  Score=42.13  Aligned_cols=27  Identities=33%  Similarity=0.412  Sum_probs=23.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|+|+ ..+||.+.
T Consensus        29 l~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           29 FSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             HHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             HHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            5799999999999999999 57888764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.91  E-value=0.0027  Score=42.29  Aligned_cols=28  Identities=21%  Similarity=0.204  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC----CcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS----FIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~----~~GG~~~   28 (87)
                      |+||.+|+++|++|+|+|+..    .+||++.
T Consensus        17 l~AA~~la~~g~~v~liE~~~~gg~~~~G~~~   48 (314)
T 4a5l_A           17 HTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLT   48 (314)
T ss_dssp             HHHHHHHHHTTCCCEEECCSSGGGCCTTCGGG
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccCCCcC
Confidence            589999999999999999975    3555543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=95.89  E-value=0.0045  Score=42.37  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |++|++|+++|++|+|+|+....+
T Consensus        19 ls~A~~La~~G~~V~vle~~~~~~   42 (363)
T 1c0p_A           19 LSSALILARKGYSVHILARDLPED   42 (363)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             HHHHHHHHhCCCEEEEEeccCCCC
Confidence            589999999999999999987444

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=95.88  E-value=0.0034  Score=44.41  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|.+|+|+|+.+.+|+
T Consensus        17 l~aA~~la~~G~~V~vlEk~~~~g~   41 (401)
T 2gqf_A           17 LFCAAQLAKLGKSVTVFDNGKKIGR   41 (401)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCch
Confidence            5799999999999999999998854

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=95.87  E-value=0.002  Score=42.71  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=24.2

Q ss_pred             ChhHHHHhhCCCcEEE-EeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDI-YELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v-~E~~~~~GG~~~   28 (87)
                      |+||..|+++|++|+| +|+ +.+||.+.
T Consensus        17 l~aA~~l~~~g~~v~li~e~-~~~gG~~~   44 (315)
T 3r9u_A           17 LSAGLYATRGGLKNVVMFEK-GMPGGQIT   44 (315)
T ss_dssp             HHHHHHHHHHTCSCEEEECS-SSTTGGGG
T ss_pred             HHHHHHHHHCCCCeEEEEeC-CCCCceee
Confidence            5899999999999999 999 78899764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=95.86  E-value=0.0041  Score=45.39  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|++|+|+|+++.+||.+.
T Consensus        29 l~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           29 LYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            5799999999999999999999999653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=95.86  E-value=0.0038  Score=44.24  Aligned_cols=28  Identities=32%  Similarity=0.420  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCC--cEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGH--EVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~--~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|+  +|+|||+++.+||.+.
T Consensus        19 l~aA~~L~~~G~~~~V~v~E~~~~~GG~~~   48 (447)
T 2gv8_A           19 LVTAKALLAEKAFDQVTLFERRGSPGGVWN   48 (447)
T ss_dssp             HHHHHHHHTTTCCSEEEEECSSSSSSTTCS
T ss_pred             HHHHHHHHhcCCCCCeEEEecCCCCCCeec
Confidence            589999999999  9999999999999664

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.82  E-value=0.0031  Score=45.25  Aligned_cols=27  Identities=33%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      ++||..|++.|++|+|+|+++.+||.|
T Consensus        19 l~aA~~l~~~G~~V~liE~~~~~GG~~   45 (482)
T 1ojt_A           19 YSAAFAAADEGLKVAIVERYKTLGGVC   45 (482)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSCSSHHH
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCCce
Confidence            479999999999999999999999865

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=95.80  E-value=0.0057  Score=44.30  Aligned_cols=48  Identities=25%  Similarity=0.205  Sum_probs=35.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|+.|+++|++|+|+|+++.++...+.                ..-.++.+++++++|+.+.
T Consensus        18 l~~A~~La~~G~~v~viEr~~~~~~~~~~----------------~~l~~~~~~~l~~lGl~~~   65 (535)
T 3ihg_A           18 LSTAMFLARQGVRVLVVERRPGLSPYPRA----------------AGQNPRTMELLRIGGVADE   65 (535)
T ss_dssp             HHHHHHHHTTTCCEEEECSSSSCCCCCCS----------------CCBCHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCCCcc----------------ceECHHHHHHHHHcCCHHH
Confidence            58999999999999999999876532111                0124678889999988653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.74  E-value=0.0051  Score=42.18  Aligned_cols=24  Identities=42%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|++|+++|++|+|+|++. +|+
T Consensus        18 l~~A~~La~~G~~V~lle~~~-~~~   41 (382)
T 1y56_B           18 VTIAHELAKRGEEVTVIEKRF-IGS   41 (382)
T ss_dssp             HHHHHHHHHTTCCEEEECSSS-TTC
T ss_pred             HHHHHHHHHCCCeEEEEeCCC-CCC
Confidence            589999999999999999984 443

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=95.69  E-value=0.0052  Score=43.75  Aligned_cols=26  Identities=19%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|+++|.+|+|+|+.+.+|+.
T Consensus        39 l~aA~~la~~G~~V~llEk~~~~g~~   64 (447)
T 2i0z_A           39 LMAAIGAAEEGANVLLLDKGNKLGRK   64 (447)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCce
Confidence            57999999999999999999988864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=95.68  E-value=0.0039  Score=45.73  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=24.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|.+|+|+|+.+.+||..
T Consensus       134 l~aA~~la~~G~~V~vlEk~~~~gg~s  160 (566)
T 1qo8_A          134 FNASLAAKKAGANVILVDKAPFSGGNS  160 (566)
T ss_dssp             HHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            589999999999999999999998753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=95.68  E-value=0.0055  Score=42.64  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|..|+++|++|+|+|+++.++.
T Consensus        39 l~~A~~L~~~G~~v~v~E~~~~~~~   63 (398)
T 2xdo_A           39 LTMAKLLQQNGIDVSVYERDNDREA   63 (398)
T ss_dssp             HHHHHHHHTTTCEEEEEECSSSTTC
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCccc
Confidence            5799999999999999999987654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=95.58  E-value=0.0058  Score=41.56  Aligned_cols=27  Identities=30%  Similarity=0.403  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|+ +|+|+|+++ +||.+.
T Consensus        17 l~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A           17 IGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            579999999999 999999999 998653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.57  E-value=0.0042  Score=44.32  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.|++|+|+|+++.+||
T Consensus        16 l~aA~~la~~G~~V~liEk~~~~gG   40 (476)
T 3lad_A           16 YVAAIKSAQLGLKTALIEKYKGKEG   40 (476)
T ss_dssp             HHHHHHHHHHTCCEEEEECCBCTTS
T ss_pred             HHHHHHHHhCCCEEEEEeCCCccCC
Confidence            5799999999999999999985444

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.57  E-value=0.0062  Score=47.90  Aligned_cols=27  Identities=30%  Similarity=0.537  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|+ +|+|||+.+.+||..
T Consensus       200 l~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          200 ISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             HHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            589999999999 799999999999965

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.52  E-value=0.0067  Score=44.68  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||.+.
T Consensus        34 l~aA~~L~~~G~~v~iiE~~~~~GGtw~   61 (549)
T 4ap3_A           34 LYAIHRFRSQGLTVRAFEAASGVGGVWY   61 (549)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            5799999999999999999999999654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.51  E-value=0.0067  Score=44.62  Aligned_cols=28  Identities=21%  Similarity=0.124  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+++.+||.+.
T Consensus        22 l~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A           22 IYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            5799999999999999999999999653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.46  E-value=0.0047  Score=44.57  Aligned_cols=26  Identities=15%  Similarity=0.089  Sum_probs=23.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|++|+|+|+++ +||.|
T Consensus        21 l~aA~~la~~G~~V~liE~~~-~GGtc   46 (492)
T 3ic9_A           21 MGAYRAAKKHTDKVVLIEGGA-YGTTC   46 (492)
T ss_dssp             HHHHHHHHTTCSCEEEEESSC-SSCHH
T ss_pred             HHHHHHHHhCCCcEEEEeCCC-CCCcc
Confidence            579999999999999999974 99976

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.45  E-value=0.005  Score=44.03  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|++|+|+|++ .+||.|
T Consensus        33 l~aA~~la~~G~~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           33 LASARRAAELGARAAVVESH-KLGGTC   58 (478)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             HHHHHHHHhCCCeEEEEecC-CCCCcc
Confidence            57999999999999999965 889976

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=95.45  E-value=0.0082  Score=44.38  Aligned_cols=47  Identities=15%  Similarity=-0.102  Sum_probs=34.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |++|+.|+++|++|+|+|+.+.+....+      +          ..-.++..++++++|+.+
T Consensus        62 L~~A~~La~~G~~V~VlEr~~~~~~~~r------~----------~~l~~~s~~~l~~lGl~~  108 (570)
T 3fmw_A           62 LMLAGELRAGGVGALVLEKLVEPVGHDR------A----------GALHIRTVETLDLRGLLD  108 (570)
T ss_dssp             HHHHHHHHHTTCCEEEEBSCSSCCCSSS------C----------CCBCHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCCCce------E----------EEECHHHHHHHHHcCChH
Confidence            5899999999999999999887642111      1          112366788888888754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=95.39  E-value=0.0058  Score=42.69  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++  |++|+|+|+.+.+||.+
T Consensus        78 l~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           78 LSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             HHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             HHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            5799999998  99999999999998644

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.38  E-value=0.0054  Score=43.69  Aligned_cols=27  Identities=33%  Similarity=0.569  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.|.
T Consensus        17 l~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A           17 MAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             HHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             HHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            57999999999999999998 7898653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.37  E-value=0.0081  Score=44.13  Aligned_cols=28  Identities=14%  Similarity=0.088  Sum_probs=25.0

Q ss_pred             ChhHHHHh-hCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELL-DQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~-~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+ +.|++|+|+|+++.+||.+.
T Consensus        21 l~aA~~L~~~~G~~v~viE~~~~~GGtw~   49 (540)
T 3gwf_A           21 IYAVHKLHHELGLTTVGFDKADGPGGTWY   49 (540)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSSSSCTHHH
T ss_pred             HHHHHHHHHcCCCCEEEEECCCCCCCccc
Confidence            57999999 89999999999999998653

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=95.34  E-value=0.006  Score=43.83  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=24.4

Q ss_pred             ChhHHHHhhCCCcEEEEee--------CCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYEL--------RSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~--------~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+        ...+||-|.
T Consensus        19 l~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A           19 LACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             HHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             HHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            5799999999999999998        678999663

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.31  E-value=0.0055  Score=43.64  Aligned_cols=27  Identities=15%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.|.
T Consensus        17 l~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A           17 IASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             HHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             HHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            47999999999999999998 7899763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.29  E-value=0.0055  Score=41.14  Aligned_cols=28  Identities=14%  Similarity=0.128  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCCcEEEEee----CCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYEL----RSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~----~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+    ...+||.+.
T Consensus        21 l~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A           21 HTAAIYAARAELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             HHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             HHHHHHHHHCCCeEEEEeccCccccCCCceee
Confidence            5799999999999999999    678888764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.27  E-value=0.0072  Score=47.29  Aligned_cols=28  Identities=25%  Similarity=0.351  Sum_probs=26.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++++||.+.
T Consensus       141 l~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          141 LAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            5799999999999999999999999886

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.0061  Score=43.72  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=24.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.|.
T Consensus        24 l~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           24 VASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             HHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             HHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            57999999999999999997 7899764

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=95.25  E-value=0.008  Score=40.26  Aligned_cols=26  Identities=8%  Similarity=0.266  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||.+|+++|++|+|+|+.. +||.+
T Consensus        19 lsAA~~lar~g~~v~lie~~~-~gg~~   44 (304)
T 4fk1_A           19 LNASLVLGRARKQIALFDNNT-NRNRV   44 (304)
T ss_dssp             HHHHHHHHHTTCCEEEEECSC-CGGGG
T ss_pred             HHHHHHHHHCCCCEEEEeCCC-CCCee
Confidence            589999999999999999864 56643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=95.22  E-value=0.021  Score=42.54  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~   63 (87)
                      |+||+.|+++|++|+|+|+.+.++..+             |    ....++..++++++|+.+
T Consensus        36 l~aA~~Lar~G~~V~LiEr~~~~~~~~-------------G----~~l~p~~~~~l~~lGl~~   81 (591)
T 3i3l_A           36 SVAGLTLHKLGHDVTIYERSAFPRYRV-------------G----ESLLPGTMSILNRLGLQE   81 (591)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCSSCCCC-------------C----CBCCHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCCCEEEEcCCCCCCCce-------------e----eeECHHHHHHHHHcCCcH
Confidence            579999999999999999997655421             1    122367788888888743

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=95.21  E-value=0.0072  Score=41.57  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             ChhHHHHhh-CC-CcEEEEeeCCCcC
Q 034688            1 MSTAVELLD-QG-HEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~-~G-~~V~v~E~~~~~G   24 (87)
                      |+||++|++ +| ++|+|+|+.+..+
T Consensus        34 l~~A~~La~~~G~~~V~vlE~~~~~~   59 (405)
T 2gag_B           34 LATAYFLAKNHGITNVAVLEKGWLAG   59 (405)
T ss_dssp             HHHHHHHHHHHCCCCEEEECSSSTTC
T ss_pred             HHHHHHHHHhcCCCcEEEEeCCCCCC
Confidence            579999999 99 9999999998433

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.20  E-value=0.0084  Score=42.99  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=25.6

Q ss_pred             ChhHHHHhh---CCCc---EEEEeeCCCcCceEE
Q 034688            1 MSTAVELLD---QGHE---VDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~---~G~~---V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++   .|++   |+|+|+++.+||.+.
T Consensus        15 l~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~   48 (464)
T 2xve_A           15 MAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWN   48 (464)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGS
T ss_pred             HHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEee
Confidence            579999999   9999   999999999999765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=95.20  E-value=0.0096  Score=41.30  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=20.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      |+||+.|+++|++|+|+|+.+.
T Consensus        18 l~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A           18 TVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             HHHHHHHHTTTCCEEEECSSCS
T ss_pred             HHHHHHHHhCCCCEEEEeCCCC
Confidence            5799999999999999999873

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.20  E-value=0.0095  Score=44.58  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=25.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+++.+||.+.
T Consensus       386 l~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          386 LAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             HHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            5799999999999999999999999753

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=95.18  E-value=0.0043  Score=46.03  Aligned_cols=27  Identities=15%  Similarity=0.113  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|++.|++|+|+|+.+.++++.
T Consensus       120 L~aA~~La~~G~kV~VlEr~~~~~~R~  146 (549)
T 3nlc_A          120 LFAGLVLAQMGFNPIIVERGKEVRERT  146 (549)
T ss_dssp             HHHHHHHHHTTCCCEEECSSCCHHHHH
T ss_pred             HHHHHHHHHCCCeEEEEEccCcccccc
Confidence            579999999999999999998875543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.14  E-value=0.0072  Score=43.25  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.|.
T Consensus        17 l~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A           17 LAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             HHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            47999999999999999998 7899763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.13  E-value=0.0084  Score=39.86  Aligned_cols=27  Identities=19%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|+ +|+|+|++ .+||.+.
T Consensus        14 l~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A           14 LSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             HHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             HHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            579999999999 99999994 7888764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.07  E-value=0.008  Score=43.69  Aligned_cols=28  Identities=21%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC--------CcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRS--------FIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~--------~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+.+        .+||.|.
T Consensus        45 l~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   80 (519)
T 3qfa_A           45 LAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV   80 (519)
T ss_dssp             HHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred             HHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence            579999999999999999965        7899763

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.06  E-value=0.0052  Score=43.85  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=24.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+ +.+||.|.
T Consensus        18 l~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A           18 YVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             HHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             HHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            4789999999999999999 78999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.05  E-value=0.0073  Score=42.98  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|++|+|+|++ .+||.+
T Consensus        16 l~aA~~l~~~G~~V~liE~~-~~gG~~   41 (464)
T 2a8x_A           16 YVAAIRAAQLGLSTAIVEPK-YWGGVC   41 (464)
T ss_dssp             HHHHHHHHHTTCCEEEECSS-CTTHHH
T ss_pred             HHHHHHHHhCCCeEEEEeCC-CCCCcc
Confidence            57999999999999999998 788876

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.05  E-value=0.0079  Score=42.71  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|++|+|+|++ .+||.|
T Consensus        16 l~aA~~l~~~g~~V~lie~~-~~gG~~   41 (455)
T 1ebd_A           16 YVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (455)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             HHHHHHHHhCCCeEEEEECC-CCCCcC
Confidence            47999999999999999998 889876

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=95.00  E-value=0.0055  Score=41.73  Aligned_cols=25  Identities=20%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             ChhHHHHhhCC------CcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQG------HEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G------~~V~v~E~~~~~GG   25 (87)
                      |++|++|+++|      ++|+|+|+....+|
T Consensus        13 ls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A           13 LSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             HHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             HHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            58999999998      99999999875544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.00  E-value=0.013  Score=38.46  Aligned_cols=25  Identities=12%  Similarity=0.088  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..|+++|++|+|+|+++..++
T Consensus        15 l~aA~~l~~~g~~v~lie~~~~~~~   39 (297)
T 3fbs_A           15 LSAALQLGRARKNILLVDAGERRNR   39 (297)
T ss_dssp             HHHHHHHHHTTCCEEEEECCCCGGG
T ss_pred             HHHHHHHHhCCCCEEEEeCCCcccc
Confidence            5799999999999999999876554

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=94.99  E-value=0.01  Score=43.68  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+|+.+.+||..
T Consensus       139 ~~aa~~~~~~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          139 LAAAVSARDAGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             HHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCcch
Confidence            579999999999999999999998854

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=94.98  E-value=0.0099  Score=41.86  Aligned_cols=27  Identities=26%  Similarity=0.219  Sum_probs=23.9

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++  |++|+|+|+.+.+||.+
T Consensus        92 L~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           92 LSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             HHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             HHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            5799999997  99999999999998754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.97  E-value=0.005  Score=44.35  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=24.0

Q ss_pred             ChhHHHHhhC---CCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQ---GHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~---G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.   |++|+|+|+++ +||.|.
T Consensus        15 l~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A           15 YEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             HHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             HHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            4799999998   99999999998 999653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=94.91  E-value=0.0092  Score=42.64  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      ++||..|++.|++|+|+|+++ +||.|
T Consensus        19 ~~aA~~l~~~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A           19 YHAAIRAAQLGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             HHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             HHHHHHHHHCCCeEEEEeCCC-CCCCC
Confidence            478999999999999999988 89865

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=94.90  E-value=0.014  Score=42.26  Aligned_cols=26  Identities=31%  Similarity=0.262  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |++|..|++.|++|+|+|+.+.+|+.
T Consensus       105 l~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A          105 LRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             HHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             HHHHHHHHHCCCeEEEEEeccccCCC
Confidence            57999999999999999999998764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=94.90  E-value=0.013  Score=43.15  Aligned_cols=27  Identities=19%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |++|+.|+++|++|+|+|+++..+|..
T Consensus        31 l~~A~~La~~G~~V~LlEk~d~~~GtS   57 (561)
T 3da1_A           31 AGIALDAQVRGIQTGLVEMNDFASGTS   57 (561)
T ss_dssp             HHHHHHHHTTTCCEEEEESSSTTCSGG
T ss_pred             HHHHHHHHhCCCcEEEEECCCCCCCcc
Confidence            479999999999999999998777643

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=94.87  E-value=0.0077  Score=42.37  Aligned_cols=24  Identities=17%  Similarity=0.030  Sum_probs=20.5

Q ss_pred             ChhHHHHhhCC-CcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQG-HEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G-~~V~v~E~~~~~G   24 (87)
                      |+||++|+++| ++|+|+|++..+|
T Consensus        36 ls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A           36 LAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             HHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             HHHHHHHHhCCCCcEEEEccCCCCC
Confidence            58999999999 9999999955554

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=94.87  E-value=0.014  Score=42.21  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|+.|+++|++|+|+|+.+..+|
T Consensus        16 ~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A           16 AGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCCC
Confidence            4799999999999999999874443

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=94.85  E-value=0.017  Score=43.07  Aligned_cols=48  Identities=10%  Similarity=0.001  Sum_probs=34.8

Q ss_pred             ChhHHHHhh-CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLD-QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|++ .|++|+|+|+++.++...+      +       .   .-.++.+++++++|+.+.
T Consensus        45 L~~A~~La~~~G~~V~viEr~~~~~~~g~------a-------~---~l~~~t~e~l~~lGl~~~   93 (639)
T 2dkh_A           45 LTLAAQLAAFPDIRTCIVEQKEGPMELGQ------A-------D---GIACRTMEMFEAFEFADS   93 (639)
T ss_dssp             HHHHHHHTTCTTSCEEEECSSSSCCSSCS------C-------C---EECHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCCCCCc------e-------e---eeCHHHHHHHHHcCcHHH
Confidence            589999999 9999999999987643111      1       0   113677888999988653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.82  E-value=0.0096  Score=39.67  Aligned_cols=27  Identities=15%  Similarity=0.063  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+ ..+||.+.
T Consensus        18 l~aA~~l~~~g~~v~lie~-~~~gg~~~   44 (320)
T 1trb_A           18 YTAAVYAARANLQPVLITG-MEKGGQLT   44 (320)
T ss_dssp             HHHHHHHHTTTCCCEEECC-SSTTGGGG
T ss_pred             HHHHHHHHHCCCcEEEEcc-CCCCceEe
Confidence            5799999999999999996 47888653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=94.78  E-value=0.011  Score=41.29  Aligned_cols=25  Identities=16%  Similarity=0.094  Sum_probs=21.4

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG   25 (87)
                      |++|+.|+++  |++|+|+|+....+|
T Consensus        49 ls~A~~La~~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           49 AACAFYLRQLAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             HHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            5799999999  999999999865543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.78  E-value=0.0075  Score=43.49  Aligned_cols=28  Identities=11%  Similarity=0.253  Sum_probs=24.2

Q ss_pred             ChhHHHHhh-CCCcEEEEe--------eCCCcCceEE
Q 034688            1 MSTAVELLD-QGHEVDIYE--------LRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E--------~~~~~GG~~~   28 (87)
                      |+||+.|++ .|++|+|+|        +++.+||.|.
T Consensus        16 l~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A           16 LEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             HHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             HHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            579999999 999999999        4778999763

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=94.70  E-value=0.016  Score=40.13  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=21.1

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~   23 (87)
                      |++|..|+++  |++|+|+|+++.+
T Consensus        13 l~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A           13 LVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCC
Confidence            5799999998  9999999999877

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=94.66  E-value=0.015  Score=41.09  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=19.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC
Q 034688            1 MSTAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~   21 (87)
                      |++|+.|+++|++|+|+|+++
T Consensus        35 l~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           35 LHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             HHHHHHHHHTTCEEEEEESCC
T ss_pred             HHHHHHHHHCCCeEEEEcCCC
Confidence            579999999999999999987

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=94.66  E-value=0.016  Score=42.74  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|+.|+++|++|+|+|+.+..+|
T Consensus        45 ~~~A~~La~rG~~V~LlE~~~~~~G   69 (571)
T 2rgh_A           45 AGVAVQAAASGIKTGLIEMQDFAEG   69 (571)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            4799999999999999999876555

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=94.62  E-value=0.017  Score=43.27  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+|+.+..||.+
T Consensus        59 l~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           59 CTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            479999999999999999999999854

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.61  E-value=0.0083  Score=43.35  Aligned_cols=28  Identities=14%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             ChhHHHHhh-CCCcEEEEe--------eCCCcCceEE
Q 034688            1 MSTAVELLD-QGHEVDIYE--------LRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E--------~~~~~GG~~~   28 (87)
                      |+||+.|++ .|++|+|+|        +++.+||.|.
T Consensus        20 l~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A           20 LEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             HHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            579999999 999999999        4778999763

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.60  E-value=0.012  Score=42.45  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|++ .+||.|.
T Consensus        15 l~aA~~l~~~g~~V~liE~~-~~GG~c~   41 (500)
T 1onf_A           15 MAAARRAARHNAKVALVEKS-RLGGTCV   41 (500)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             HHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence            57999999999999999998 5898763

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.49  E-value=0.013  Score=39.60  Aligned_cols=27  Identities=15%  Similarity=0.139  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++.|++|+|+|+. .+||.+.
T Consensus        27 l~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           27 YTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             HHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             HHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            57999999999999999975 7888653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=94.42  E-value=0.015  Score=43.03  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             ChhHHHHhhC------CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ------GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~------G~~V~v~E~~~~~GG~   26 (87)
                      |+||..|+++      |++|+|+|+.+.+|+.
T Consensus        48 laaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           48 LSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             HHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            5899999998      9999999999988764

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=94.41  E-value=0.013  Score=42.28  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++. ++|+|+|+++++||.+.
T Consensus       121 l~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          121 IGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             HHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             HHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            5799999999 99999999999999764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=94.37  E-value=0.018  Score=42.77  Aligned_cols=25  Identities=12%  Similarity=0.147  Sum_probs=22.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|.+|+|+||.+..||
T Consensus        20 l~AA~~la~~G~~V~vlEK~~~~~g   44 (588)
T 2wdq_A           20 MRAALQISQSGQTCALLSKVFPTRS   44 (588)
T ss_dssp             HHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCC
Confidence            5899999999999999999987754

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=94.32  E-value=0.014  Score=40.19  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=20.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      |++|+.|+++|++|+|+|+++.
T Consensus        15 l~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A           15 LLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             HHHHHHHHHHTCCEEEECSSCH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCC
Confidence            5799999999999999999875

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=94.31  E-value=0.04  Score=41.42  Aligned_cols=48  Identities=19%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             ChhHHHHhh-----CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLD-----QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~-----~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|++     .|++|+|+|+++.+.-.        |..     ..+   .++.+++++++|+.+.
T Consensus        21 L~lA~~La~~~~~~~Gi~v~viE~~~~~~~~--------gra-----~~l---~~~tle~l~~lGl~~~   73 (665)
T 1pn0_A           21 LMAARVLSEYVRQKPDLKVRIIDKRSTKVYN--------GQA-----DGL---QCRTLESLKNLGLADK   73 (665)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEECSSSSCCCS--------CSC-----CEE---CHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHhccccccCCCCEEEEeCCCCCCCC--------Cce-----eEE---ChHHHHHHHHCCCHHH
Confidence            579999999     99999999998754310        110     011   3678889999998653

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=94.17  E-value=0.047  Score=39.53  Aligned_cols=47  Identities=21%  Similarity=0.192  Sum_probs=32.9

Q ss_pred             ChhHHHHhh------------CCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLD------------QGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~------------~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |+||..|++            .|++|+|+|+.+.+.-         |    .|-.    ..++..++++++|+.+.
T Consensus        20 l~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~~---------g----~g~~----~~p~~~~~l~~lGi~e~   78 (526)
T 2pyx_A           20 WITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI---------G----VGEG----TWPSMRSTLSKIGIDEN   78 (526)
T ss_dssp             HHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCCC---------C----SCEE----CCTHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCCc---------c----eeee----chHhHHHHHHHcCCCHH
Confidence            478999999            9999999998654221         1    1111    23677888899998763

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=94.15  E-value=0.024  Score=40.96  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      |+||+.|+++|++|+|+|+.+.
T Consensus        20 l~aA~~La~~G~~V~liE~~~~   41 (512)
T 3e1t_A           20 STLASFVAMRGHRVLLLEREAF   41 (512)
T ss_dssp             HHHHHHHHTTTCCEEEECSSCS
T ss_pred             HHHHHHHHhCCCCEEEEccCCC
Confidence            5799999999999999999983

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=94.13  E-value=0.015  Score=41.19  Aligned_cols=23  Identities=17%  Similarity=0.273  Sum_probs=20.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |+||+.|+++|++|+|+|+++.+
T Consensus        19 l~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A           19 SSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             HHHHHHHSSSSCCEEEECSSCGG
T ss_pred             HHHHHHHHHCCCCEEEEECCCCC
Confidence            57999999999999999998864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.98  E-value=0.02  Score=40.93  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeC---C------CcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELR---S------FIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~---~------~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+.   +      .+||.|.
T Consensus        22 l~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~   58 (483)
T 3dgh_A           22 LACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV   58 (483)
T ss_dssp             HHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred             HHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence            57999999999999999942   1      3888763

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=93.66  E-value=0.034  Score=40.03  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|+++|.+|+|+|+. ..||.
T Consensus        12 l~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A           12 LSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             HHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             HHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            57999999999999999999 56664

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=93.54  E-value=0.037  Score=42.34  Aligned_cols=23  Identities=17%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCc
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~   23 (87)
                      |++|++|+++|+ +|+|+|+.+..
T Consensus        17 ls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A           17 TNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCCC
Confidence            589999999998 99999999864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=93.42  E-value=0.033  Score=40.86  Aligned_cols=25  Identities=28%  Similarity=0.376  Sum_probs=21.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|++ |.+|+|+|+.+..||.
T Consensus        21 l~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A           21 LSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             HHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             HHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            589999999 9999999999988764

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=93.40  E-value=0.034  Score=41.69  Aligned_cols=26  Identities=12%  Similarity=0.036  Sum_probs=22.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|+++|.+|+|+|+.+..+|.
T Consensus        31 l~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           31 LRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             HHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             HHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            58999999999999999998876653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=93.39  E-value=0.038  Score=35.84  Aligned_cols=25  Identities=20%  Similarity=0.011  Sum_probs=21.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.|.+|+|+|+.....|
T Consensus        16 l~aA~~la~~g~~v~lie~~~~~~G   40 (232)
T 2cul_A           16 AETAFWLAQKGVRVGLLTQSLDAVM   40 (232)
T ss_dssp             HHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             HHHHHHHHHCCCCEEEEecCCCcCC
Confidence            4799999999999999999854444

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=93.34  E-value=0.031  Score=42.23  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|.+|+|+|+.+..+|
T Consensus        18 L~AAl~aae~G~~V~vlEK~~~~~g   42 (660)
T 2bs2_A           18 LRAAVATQQKGLSTIVLSLIPVKRS   42 (660)
T ss_dssp             HHHHHHHHTTTCCEEEECSSCGGGS
T ss_pred             HHHHHHHHHCCCcEEEEeccCCCCC
Confidence            5899999999999999999987644

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=93.26  E-value=0.031  Score=39.66  Aligned_cols=24  Identities=17%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||..|++.  |++|+|+|+++.+|
T Consensus        15 l~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A           15 ISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             HHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             HHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5799999998  89999999999988

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=92.89  E-value=0.024  Score=40.68  Aligned_cols=28  Identities=29%  Similarity=0.274  Sum_probs=24.7

Q ss_pred             ChhHHHHhh-C------CCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLD-Q------GHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~-~------G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++ .      |++|+|+|+.+.+||.++
T Consensus        16 l~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A           16 FFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             HHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            478999988 7      999999999999999763

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.84  E-value=0.033  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=18.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||..|+++  |++|+|+|+++.++
T Consensus        16 l~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A           16 PKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCC----
T ss_pred             HHHHHHHHhhCcCCCEEEEECCCccc
Confidence            5899999998  99999999999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.79  E-value=0.069  Score=32.84  Aligned_cols=23  Identities=22%  Similarity=0.130  Sum_probs=20.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |.+|..|++.|.+|+|+|+++..
T Consensus        14 l~~A~~l~~~g~~v~lie~~~~~   36 (180)
T 2ywl_A           14 LSAALFLARAGLKVLVLDGGRSK   36 (180)
T ss_dssp             HHHHHHHHHTTCCEEEEECSCCT
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCc
Confidence            46899999999999999998743

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=92.73  E-value=0.034  Score=39.19  Aligned_cols=26  Identities=15%  Similarity=0.129  Sum_probs=23.3

Q ss_pred             ChhHHHHhhCC-----CcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQG-----HEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G-----~~V~v~E~~~~~GG~   26 (87)
                      |+||..|++.|     ++|+|+|+++.+|.+
T Consensus        43 l~aA~~L~~~g~~~~~~~v~liE~~~~~g~~   73 (463)
T 3s5w_A           43 IALAIALQERAQAQGALEVLFLDKQGDYRWH   73 (463)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEESCSSCCSS
T ss_pred             HHHHHHHHhcccccCcccEEEEecCCCCCCc
Confidence            57999999999     999999999998843

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.67  E-value=0.04  Score=39.60  Aligned_cols=27  Identities=41%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++.|  ++|+|+|+.+.+||+.
T Consensus        19 l~aA~~l~~~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A           19 FYTAQHLLKHHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCcCCcee
Confidence            47899999988  9999999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=92.67  E-value=0.046  Score=36.20  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|++.|++|+|+|+  ++||.+.
T Consensus        14 l~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A           14 AAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             HHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             HHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            5799999999999999985  5888764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.27  E-value=0.08  Score=36.91  Aligned_cols=25  Identities=12%  Similarity=0.093  Sum_probs=22.2

Q ss_pred             ChhHHHHhhCCC--cEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGH--EVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~--~V~v~E~~~~~GG   25 (87)
                      |+||..|+++|+  +|+|+|+++.++.
T Consensus        14 l~aA~~L~~~g~~~~V~lie~~~~~~y   40 (404)
T 3fg2_P           14 FQVAVSLRQAKYPGRIALINDEKHLPY   40 (404)
T ss_dssp             HHHHHHHHHTTCCSCEEEECCSSSSSB
T ss_pred             HHHHHHHHhhCcCCCEEEEeCCCCCCC
Confidence            579999999999  8999999997664

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=92.22  E-value=0.081  Score=38.36  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.5

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCC
Q 034688            1 MSTAVELLD---QGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~   22 (87)
                      |++|+.|++   .|++|+|+|+.+.
T Consensus        18 l~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A           18 WMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             HHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             HHHHHHHHhhcCCCCEEEEECCCCC
Confidence            579999999   9999999999654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=92.03  E-value=0.079  Score=38.90  Aligned_cols=27  Identities=15%  Similarity=0.311  Sum_probs=22.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeC-C-------CcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELR-S-------FIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~-~-------~~GG~~   27 (87)
                      |+||..|++.|++|+|+|+. +       .+||.|
T Consensus       120 l~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~  154 (598)
T 2x8g_A          120 LAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTC  154 (598)
T ss_dssp             HHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHH
T ss_pred             HHHHHHHHhCCCeEEEEeccCCcccccccccCceE
Confidence            57999999999999999973 3       478854

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=91.89  E-value=0.042  Score=38.25  Aligned_cols=25  Identities=16%  Similarity=0.127  Sum_probs=21.9

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLD---QGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++   .|++|+|+|+++..+.
T Consensus        14 l~aA~~L~~~~~~g~~V~vie~~~~~~~   41 (409)
T 3h8l_A           14 LTAAYTLKRLVGSKADVKVINKSRFSYF   41 (409)
T ss_dssp             HHHHHHHHHHHGGGSEEEEEESSSEEEE
T ss_pred             HHHHHHHHhhCCCCCeEEEEeCCCCcee
Confidence            579999999   8999999999997654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.84  E-value=0.1  Score=36.42  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=22.2

Q ss_pred             ChhHHHHhhCCCc--EEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHE--VDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~--V~v~E~~~~~GG   25 (87)
                      |+||..|+++|++  |+|+|+++.++.
T Consensus        22 l~aA~~L~~~g~~~~V~lie~~~~~~y   48 (415)
T 3lxd_A           22 AQAAIALRQNGFEGRVLVIGREPEIPY   48 (415)
T ss_dssp             HHHHHHHHHTTCCSCEEEEESSSSCCB
T ss_pred             HHHHHHHHccCcCCCEEEEecCCCCCc
Confidence            5799999999987  999999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=91.82  E-value=0.064  Score=37.93  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=21.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|++.  |++|+|+|+++.+++.
T Consensus        16 l~aA~~L~~~~~~~~V~vie~~~~~~~~   43 (449)
T 3kd9_A           16 MSAASRVKRLKPEWDVKVFEATEWVSHA   43 (449)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSSSCCC--
T ss_pred             HHHHHHHHHhCcCCCEEEEECCCccccC
Confidence            5799999987  8899999999988764

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=91.80  E-value=0.056  Score=38.76  Aligned_cols=22  Identities=23%  Similarity=0.114  Sum_probs=17.8

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCC
Q 034688            1 MSTAVELLD---QGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~   22 (87)
                      |+||+.|++   .|++|+|+|+.+.
T Consensus        15 l~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A           15 WMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             HHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             HHHHHHHHhhcCCCCEEEEEecCCC
Confidence            579999999   9999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=91.78  E-value=0.062  Score=39.34  Aligned_cols=24  Identities=25%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||+.|++.  |++|+|+|+++.+|
T Consensus        49 l~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           49 ASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             HHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             HHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999998  89999999999976

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=91.15  E-value=0.072  Score=39.63  Aligned_cols=25  Identities=4%  Similarity=0.069  Sum_probs=21.8

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++|  .+|+|+|+.+..+|
T Consensus        18 l~aAl~la~~G~~~~V~vlEk~~~~~~   44 (602)
T 1kf6_A           18 LRAAIAAAQANPNAKIALISKVYPMRS   44 (602)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             HHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence            58999999999  99999999876644

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=91.08  E-value=0.12  Score=37.77  Aligned_cols=22  Identities=9%  Similarity=0.060  Sum_probs=19.3

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCC
Q 034688            1 MSTAVELLD---QGHEVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~   22 (87)
                      ++||+.|++   .|++|+|+|+.+.
T Consensus        38 l~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           38 WMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             HHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             HHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            479999999   9999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=90.73  E-value=0.091  Score=38.04  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||+.|++.  |++|+|+|+++.++
T Consensus        14 l~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A           14 ASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             HHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             HHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5799999987  89999999999886

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=90.64  E-value=0.11  Score=37.83  Aligned_cols=26  Identities=23%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|++|+|+|+  ++||.+.
T Consensus       225 l~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          225 AAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             HHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             HHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            5799999999999999985  6898764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=90.61  E-value=0.15  Score=35.63  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             ChhHHHHhhCCCc--EEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHE--VDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~--V~v~E~~~~~GG   25 (87)
                      |+||..|+++|++  |+|+|+++.++.
T Consensus        15 l~aA~~L~~~g~~~~V~li~~~~~~~y   41 (410)
T 3ef6_A           15 FTTAQALRAEGFEGRISLIGDEPHLPY   41 (410)
T ss_dssp             HHHHHHHHHTTCCSEEEEEECSSSSSB
T ss_pred             HHHHHHHHccCcCCeEEEEECCCCCCc
Confidence            5799999999987  999999998765

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=90.58  E-value=0.11  Score=36.73  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.6

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.  |++|+|+|+++.++.
T Consensus        13 l~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A           13 TFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             HHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             HHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            4789999998  999999999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=90.26  E-value=0.12  Score=36.52  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||..|++.  |++|+|+|+++.+|
T Consensus        13 l~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A           13 YEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             HHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             HHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4789999987  99999999999876

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=89.96  E-value=0.18  Score=36.80  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      +.||+.|+++|++|+|+|+++..+.-.
T Consensus        14 ~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A           14 SEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             HHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            368999999999999999988665543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=89.54  E-value=0.12  Score=38.10  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeC--------CCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELR--------SFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~--------~~~GG~~   27 (87)
                      ++||.++++.|.+|.|+|+.        ..+||-|
T Consensus        55 ~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtC   89 (542)
T 4b1b_A           55 MASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTC   89 (542)
T ss_dssp             HHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHH
T ss_pred             HHHHHHHHHCCCeEEEEeccccccccccCCCCCcc
Confidence            36899999999999999974        4589954

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=89.01  E-value=0.2  Score=36.39  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      +++|.+|+++|++|+|+|+.+..
T Consensus        20 ~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A           20 IIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCCC
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCC
Confidence            36899999999999999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=88.98  E-value=0.17  Score=36.23  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.  |.+|+|+|+++..++
T Consensus        49 l~aA~~l~~~~~g~~V~lie~~~~~~~   75 (480)
T 3cgb_A           49 MSAAMQIVRNDENANVVTLEKGEIYSY   75 (480)
T ss_dssp             HHHHHHHHHHCTTCEEEEECSSSCCSB
T ss_pred             HHHHHHHHhhCcCCcEEEEECCCCCCC
Confidence            4789999986  899999999988764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=88.10  E-value=0.23  Score=37.64  Aligned_cols=25  Identities=8%  Similarity=0.033  Sum_probs=21.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~GG   25 (87)
                      ++||+.|++.|.+|+|+|+.. .+|+
T Consensus        34 l~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           34 CEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             HHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             HHHHHHHHHCCCcEEEEEecccccCC
Confidence            479999999999999999985 4554

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=88.00  E-value=0.31  Score=35.23  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +++|.+|++.|++|+|+|+.++.+
T Consensus        18 ~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A           18 AVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             HHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             HHHHHHHHhCCCcEEEEeCCCCCC
Confidence            368999999999999999988765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.99  E-value=0.23  Score=34.33  Aligned_cols=23  Identities=17%  Similarity=0.089  Sum_probs=20.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      |+||..|++.| +|+|+|+++..+
T Consensus        21 l~aA~~l~~~g-~V~lie~~~~~~   43 (367)
T 1xhc_A           21 FELAKQLSQTY-EVTVIDKEPVPY   43 (367)
T ss_dssp             HHHHHHHTTTS-EEEEECSSSSCC
T ss_pred             HHHHHHHhhcC-CEEEEECCCCCc
Confidence            57999999999 999999998754

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=87.97  E-value=0.26  Score=36.83  Aligned_cols=23  Identities=22%  Similarity=0.183  Sum_probs=20.0

Q ss_pred             ChhHHHHh---h-CCCcEEEEeeCCCc
Q 034688            1 MSTAVELL---D-QGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~---~-~G~~V~v~E~~~~~   23 (87)
                      |+||+.|+   + +|.+|+|+||.+..
T Consensus        35 l~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           35 CGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             HHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             HHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            58999999   6 89999999998853

>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}

Probab=87.96  E-value=1  Score=26.87  Aligned_cols=38  Identities=18%  Similarity=0.017  Sum_probs=28.7

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeee
Q 034688            3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEIS   41 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G   41 (87)
                      +..+|.++|.++. -|-.+..+|+...++|++|..+++-
T Consensus       112 ~~~~l~~~Gv~~~-~~p~~~~~g~~~~f~DPdGn~iel~  149 (155)
T 4g6x_A          112 EYERLSALGVRFT-QEPTDMGPVVTAILDDTCGNLIQLM  149 (155)
T ss_dssp             HHHHHHHTTCCEE-EEEEECSSCEEEEEECSSSCEEEEE
T ss_pred             hhhHHhcCCcEEe-eCCEEcCCeEEEEEECCCCCEEEEE
Confidence            3456788898764 3555677899888899999998874

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=87.38  E-value=0.23  Score=37.48  Aligned_cols=25  Identities=12%  Similarity=0.070  Sum_probs=21.1

Q ss_pred             ChhHHHHhhC------CCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQ------GHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~------G~~V~v~E~~~~~GG   25 (87)
                      |+||+.|+++      |.+|+|+|+.+..++
T Consensus        35 L~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           35 CGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             HHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            5899999997      999999999876443

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=86.45  E-value=0.33  Score=36.83  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcC
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~G   24 (87)
                      ++||+.|++.|.+|+|+|+.. .+|
T Consensus        40 l~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           40 IEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             HHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             HHHHHHHHHCCCCEEEEEecccccC
Confidence            479999999999999999984 455

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=86.24  E-value=0.42  Score=33.71  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCC--cEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGH--EVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~--~V~v~E~~~~~G   24 (87)
                      |+||..|++.|+  +|+|+|+++.++
T Consensus        17 l~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A           17 VEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             HHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             HHHHHHHHccCcCCCEEEEECCCCCC
Confidence            578999999998  799999988754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=86.21  E-value=0.21  Score=35.81  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=21.6

Q ss_pred             ChhHHHHhhCC---CcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQG---HEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G---~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.|   ++|+|+|+++.++.
T Consensus        48 l~aA~~l~~~g~~~~~V~lie~~~~~~~   75 (490)
T 2bc0_A           48 TACIKTMLTNYGDANEIVVFDQNSNISF   75 (490)
T ss_dssp             HHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred             HHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence            47899999988   99999999987653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=86.09  E-value=0.37  Score=33.66  Aligned_cols=25  Identities=12%  Similarity=0.230  Sum_probs=22.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.+.+|+|+|+++.++.
T Consensus        22 l~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A           22 FSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             HHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             HHHHHHHhCCCCEEEEEECCCCCCc
Confidence            4789999888999999999999874

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=86.08  E-value=0.35  Score=33.84  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=20.8

Q ss_pred             ChhHHHHhhCCC--cEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGH--EVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~--~V~v~E~~~~~G   24 (87)
                      |+||..|++.|+  +|+|+|+++.++
T Consensus        20 l~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A           20 VSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             HHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             HHHHHHHHccCCCCeEEEEECCCCCc
Confidence            478999999998  499999998765

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=85.80  E-value=0.36  Score=36.64  Aligned_cols=24  Identities=13%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC-CcC
Q 034688            1 MSTAVELLDQGHEVDIYELRS-FIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~-~~G   24 (87)
                      ++||+.|++.|.+|+|+|+.. .+|
T Consensus        41 l~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           41 TEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             HHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             HHHHHHHHhCCCCEEEEeecccccc
Confidence            479999999999999999984 344

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=85.75  E-value=0.28  Score=34.52  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.3

Q ss_pred             ChhHHHHhh---CCCcEEEEeeCCCc
Q 034688            1 MSTAVELLD---QGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~---~G~~V~v~E~~~~~   23 (87)
                      |+||..|++   .|++|+|+|+++..
T Consensus        17 l~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A           17 MPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             HHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             HHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            579999999   89999999999854

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=84.83  E-value=0.41  Score=34.42  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=20.5

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~G   24 (87)
                      |+||..|+++  |.+|+|+|+++.++
T Consensus        24 l~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           24 FAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             HHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4788888876  89999999998765

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=84.52  E-value=0.44  Score=33.73  Aligned_cols=25  Identities=12%  Similarity=0.100  Sum_probs=20.6

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG   25 (87)
                      |+||..|++.|  .+|+|+|+++..++
T Consensus        13 l~aA~~l~~~g~~~~V~lie~~~~~~~   39 (437)
T 4eqs_A           13 ATCASQIRRLDKESDIIIFEKDRDMSF   39 (437)
T ss_dssp             HHHHHHHHHHCSSSCEEEEESSSCSSB
T ss_pred             HHHHHHHHhCCCCCcEEEEeCCCCCCC
Confidence            47899999988  57999999987653

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=84.27  E-value=0.37  Score=35.22  Aligned_cols=22  Identities=23%  Similarity=0.114  Sum_probs=19.3

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcC
Q 034688            2 STAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      ++|.+|++ |.+|+|+|+.+..+
T Consensus        40 v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A           40 PLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             HHHHHHTT-TSCEEEECSSBCGG
T ss_pred             HHHHHHhc-CCcEEEEecCCCcC
Confidence            68999999 99999999987654

>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}

Probab=82.67  E-value=4.2  Score=22.57  Aligned_cols=38  Identities=21%  Similarity=0.109  Sum_probs=25.8

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEee
Q 034688            3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEI   40 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~   40 (87)
                      +..+|.++|.++.--.....-|.+...+++++|..+++
T Consensus        88 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel  125 (127)
T 3e5d_A           88 LTEKLRQDGFAIAGEPRMTGDGYYESVVLDPEGNRIEI  125 (127)
T ss_dssp             HHHHHHHTTCCEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             HHHHHHHcCCeEecCcccCCCCcEEEEEECCCCCEEEE
Confidence            44567789998765333333455677788888998876

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=81.96  E-value=0.71  Score=32.96  Aligned_cols=21  Identities=19%  Similarity=0.056  Sum_probs=17.6

Q ss_pred             hhHHHHhh-CCCcEEEEeeCCC
Q 034688            2 STAVELLD-QGHEVDIYELRSF   22 (87)
Q Consensus         2 ~aA~~L~~-~G~~V~v~E~~~~   22 (87)
                      ..|.+|++ .|++|+|+|+.+.
T Consensus        31 v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           31 LLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             HHHHHHTTSTTSCEEEECSSBC
T ss_pred             HHHHHHHhCCCCeEEEEcCCCC
Confidence            46889997 6899999999764

>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}

Probab=81.06  E-value=3.1  Score=23.95  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=26.3

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeee
Q 034688            3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISL   42 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~   42 (87)
                      +..+|.++|.++.+-|-.....|....++|.+|..++...
T Consensus        80 ~~~~l~~~G~~~~~~~p~~~~~G~~~~~~DPdGn~iel~~  119 (128)
T 3g12_A           80 TVQELVKIPGAMCILDPTDMPDGKKAIVLDPDGHSIELCE  119 (128)
T ss_dssp             HHHHHTTSTTCEEEEEEEECC-CEEEEEECTTCCEEEEEC
T ss_pred             HHHHHHHCCCceeccCceeCCCccEEEEECCCCCEEEEEE
Confidence            3456778899833445555555655777888999888753

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=81.04  E-value=0.82  Score=33.04  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=19.4

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCc
Q 034688            2 STAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      ++|.+|++.|++|+|+|+....
T Consensus        25 ~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A           25 VAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             HHHHHHHHTTCCEEEECSSCCS
T ss_pred             HHHHHHHHCCCcEEEEECCCCC
Confidence            5899999999999999998754

>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}

Probab=80.39  E-value=6.3  Score=22.62  Aligned_cols=40  Identities=10%  Similarity=-0.012  Sum_probs=26.5

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeee
Q 034688            3 TAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISL   42 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~   42 (87)
                      +..+|.++|.++.--.....-|++...+++++|..+++..
T Consensus        92 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~~  131 (141)
T 2rbb_A           92 LVPVAIAAGATLIKAPYETYYHWYQAVLLDPERNVFRINN  131 (141)
T ss_dssp             HHHHHHHTTCEEEEEEEECTTSEEEEEEECTTSCEEEEEE
T ss_pred             HHHHHHHcCCeEecCccccCCccEEEEEECCCCCEEEEEE
Confidence            3456778898764322222236788888889999988754

>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 inter region; yeast hypothetical protein, structural genomics, selenomethi PSI; 1.94A {Saccharomyces cerevisiae} SCOP: c.104.1.1

Probab=80.05  E-value=0.83  Score=30.47  Aligned_cols=18  Identities=17%  Similarity=0.067  Sum_probs=16.0

Q ss_pred             ChhHHHHhhCCCcEEEEe
Q 034688            1 MSTAVELLDQGHEVDIYE   18 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E   18 (87)
                      |.+|++|+++|++|+|+=
T Consensus        75 lv~AR~L~~~G~~V~v~~   92 (246)
T 1jzt_A           75 LVCARHLKLFGYNPVVFY   92 (246)
T ss_dssp             HHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHCCCeEEEEE
Confidence            478999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-11
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	3e-10
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	3e-08
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	4e-08
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	6e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	9e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-04
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	2e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	6e-04

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-11
 Identities = 15/62 (24%), Positives = 30/62 (48%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          M+ A  L D G  V + E R  +GG+  +   ++  ++++         N + RL K++G
Sbjct: 12 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELG 71

Query: 61 AD 62
           +
Sbjct: 72 LE 73

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 3e-10
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN-LFRLTKKV 59
          ++ A +L   G +V + E R  +GG+VA+F  K     ++   V  G   N +  ++K+V
Sbjct: 18 LAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQV 76

Query: 60 GADENLLMKDHTHKFVNKGGE 80
            +  L             G+
Sbjct: 77 NME--LAKIKQKCPLYEANGQ 95

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 46.7 bits (109), Expect = 3e-08
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 1   MSTAVELLDQGHEVDIYELRSFIGGKVASFVC-KRGNHIEISLHVFFGCYNNLFRLTKKV 59
           +S A  L   GH+V + E     GG+V ++   + G +  +        +  +    +K 
Sbjct: 43  LSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF 102

Query: 60  GADENLLMKDHTHKFVNKGGE 80
               N   +++ + +      
Sbjct: 103 DLRLNEFSQENDNAWYFIKNI 123

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 46.7 bits (109), Expect = 4e-08
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++ A  L  +G +  + E  + +GG V +     G  +E   + F         L   + 
Sbjct: 13 LAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAALN 71

Query: 61 ADENLLMKD 69
           +  +   D
Sbjct: 72 LEGRIRAAD 80

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 46.0 bits (107), Expect = 6e-08
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVG 60
          ++ A +L   G  V ++E     GGK+ S   + G   +   +       ++  L   +G
Sbjct: 14 LAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLG 72

Query: 61 ADENLLMKDHTHKFV 75
            E        +K  
Sbjct: 73 LREKQQFPLSQNKRY 87

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 9e-05
 Identities = 12/58 (20%), Positives = 21/58 (36%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKK 58
             A EL     +V + E R+ IGG   +  C+     +   H+F      ++     
Sbjct: 14 AVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVND 71

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.5 bits (82), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 1  MSTAVELLDQG-HEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRL 55
          +S A  L + G  ++ I E    IGG++       G ++E+  +   G        
Sbjct: 13 ISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA-GINVELGANWVEGVNGGKMNP 67

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 7/85 (8%)

Query: 1  MSTAVELL--DQGHEVDIYELRSFIGGKVASFV---CKRGNHIEISLHVFFGCYNNLFRL 55
            TA  LL       VDIYE +    G V   V        ++  +           F  
Sbjct: 14 FYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYG 73

Query: 56 TKKVGADENL--LMKDHTHKFVNKG 78
            +VG D  +  L   +    ++ G
Sbjct: 74 NVEVGRDVTVQELQDAYHAVVLSYG 98

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 34.8 bits (79), Expect = 6e-04
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 1  MSTAVELLDQGHEVDIYELRSFIGGKVAS--------FVCKRGNHIEISLHVFFGCYNNL 52
               +L ++GH+V I + R  IGG             V   G HI  + +     Y N 
Sbjct: 15 AVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK 74

Query: 53 F 53
           
Sbjct: 75 H 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.7
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.66
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.62
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.61
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.53
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.45
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.38
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.32
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.16
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.98
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.79
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.66
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.59
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.55
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	97.47
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.4
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.38
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.37
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.36
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	97.34
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.26
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.26
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.24
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.22
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.17
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.13
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.03
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	96.92
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.8
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	96.78
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.69
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	96.53
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	96.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	96.43
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.12
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	96.07
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	96.03
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.92
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.85
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.82
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	95.8
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.65
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.57
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	95.56
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	95.42
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	95.36
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	95.23
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.19
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	95.17
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.01
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	94.44
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.44
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	93.29
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.16
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.9
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.45
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.36
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.86
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.6
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	91.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.44
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.39
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	91.27
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.23
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	91.18
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	90.52
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.35
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	90.01
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	89.95
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	89.6
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	88.36
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	87.85
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	87.37
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	87.06
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	84.77
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.38
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	82.73
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	80.29
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	80.09
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	80.07

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=108.53  Aligned_cols=62  Identities=27%  Similarity=0.396  Sum_probs=56.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCC-hHHHHHHHHcCCCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCY-NNLFRLTKKVGADE   63 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~lg~~~   63 (87)
                      |+||++|+++|++|+|||+++++|||++|++ .+|+.+|+|+|+++..+ +.+.++++++|++.
T Consensus        18 L~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~   80 (449)
T d2dw4a2          18 LAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQVNMEL   80 (449)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHHHTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECCCCCcHHHHHHHHcCCcc
Confidence            7899999999999999999999999999987 46899999999998654 45889999999975

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.9e-17  Score=107.47  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |+||++|+++|++|+||||++++||+++|.+..+|+.+|+|+++++..++++.++++++|++..
T Consensus        12 L~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~   75 (383)
T d2v5za1          12 MAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETY   75 (383)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcce
Confidence            6899999999999999999999999999988777999999999999999999999999998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.62  E-value=2.1e-16  Score=101.57  Aligned_cols=66  Identities=20%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceee
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLM   67 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~   67 (87)
                      |+||++|+++|++|+|||+++++||+++|++ .+|+.+|.|+|+|+..++++.++++++++......
T Consensus        14 L~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (373)
T d1seza1          14 LAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQF   79 (373)
T ss_dssp             HHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHTTCGGGEEC
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCHHHHHHHHHhCCcccccc
Confidence            6899999999999999999999999999987 46899999999999999999999999998765443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.61  E-value=2.5e-16  Score=101.58  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeee
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMK   68 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~   68 (87)
                      |+||++|+++|++|+||||++++||+++|+. .+|+.+|.|+++++..++++.++++++++...+.+.
T Consensus        13 L~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~~~~~   79 (347)
T d2ivda1          13 LAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAA   79 (347)
T ss_dssp             HHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHTTCGGGEECS
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCceEEEEe-eCCEEEecCceEEecCCHHHHHHHHHhcccccceec
Confidence            6899999999999999999999999999987 568999999999999999999999999998765544

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.53  E-value=4.1e-15  Score=97.58  Aligned_cols=64  Identities=20%  Similarity=0.208  Sum_probs=58.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-CCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-RGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |+||++|+++|++|+|||+++++||+++|++.. .++.+|.|++++...++++.++++++++...
T Consensus        43 LsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~  107 (370)
T d2iida1          43 LSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN  107 (370)
T ss_dssp             HHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHhCCccc
Confidence            689999999999999999999999999998754 3799999999999999999999999998754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.45  E-value=6.7e-14  Score=95.37  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc--CCeEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK--RGNHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKG   78 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~--~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~   78 (87)
                      |+||+.|+++|++|+|+|+++++||+|+|+++.  ++.++|.|+|.|+.+.+.++++++++.-  ...+...  .....+
T Consensus        15 L~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~~~~--~~~~~~~--~~~~~~   90 (314)
T d2bi7a1          15 AVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAE--MMPYVNR--VKATVN   90 (314)
T ss_dssp             HHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTSC--EEECCCC--EEEEET
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHHhhh--hhhhccc--cceeec
Confidence            689999999999999999999999999998753  4689999999999999999999987752  2222222  233345


Q ss_pred             CeEEEE
Q 034688           79 GEIGGI   84 (87)
Q Consensus        79 g~~~~~   84 (87)
                      |++..+
T Consensus        91 g~~~~~   96 (314)
T d2bi7a1          91 GQVFSL   96 (314)
T ss_dssp             TEEEEE
T ss_pred             ceeecc
Confidence            666554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.38  E-value=2.4e-14  Score=89.54  Aligned_cols=50  Identities=24%  Similarity=0.330  Sum_probs=44.3

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChH
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNN   51 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~   51 (87)
                      |+||++|+++|+ +|+||||++++||+++|++ .+|+.+|+|+++++..+.+
T Consensus        13 L~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~   63 (347)
T d1b5qa1          13 ISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVNGG   63 (347)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEESSS
T ss_pred             HHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEeccchh
Confidence            689999999997 7999999999999999987 5689999999999865544

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=3e-13  Score=91.29  Aligned_cols=60  Identities=20%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCe-EEeeeeEEEeCCChHHHHHHHHcCC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGN-HIEISLHVFFGCYNNLFRLTKKVGA   61 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~-~~d~G~~~~~~~~~~~~~l~~~lg~   61 (87)
                      |+||+.|+++|++|+|+|+++++||+|+|.. .+|. +++.|+|.|++..+.+.+++.++..
T Consensus        14 l~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~   74 (298)
T d1i8ta1          14 AVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVNDLVE   74 (298)
T ss_dssp             HHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecchHHHHHhhcccc
Confidence            6899999999999999999999999999975 4565 5699999999999999999988764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.8e-11  Score=76.22  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=55.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEecc-----------------------CCeEEeeeeEEEeCCChHHHHHHH
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCK-----------------------RGNHIEISLHVFFGCYNNLFRLTK   57 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~-----------------------~g~~~d~G~~~~~~~~~~~~~l~~   57 (87)
                      |+||++|+++|++|+|+||++++||+++|+...                       .++.+|.+++.+.... .+...+.
T Consensus        18 l~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~   96 (297)
T d2bcgg1          18 CILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANG-ELTNILI   96 (297)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEETTS-HHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccCcccccCCC-cceeeee
Confidence            689999999999999999999999999987421                       1356788888776655 3445555


Q ss_pred             HcCCCCceeeeCceeeEEccCCeEE
Q 034688           58 KVGADENLLMKDHTHKFVNKGGEIG   82 (87)
Q Consensus        58 ~lg~~~~l~~~~~~~~~~~~~g~~~   82 (87)
                      ..+....+.+......+...+++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~  121 (297)
T d2bcgg1          97 HTDVTRYVDFKQVSGSYVFKQGKIY  121 (297)
T ss_dssp             HHTGGGTCCEEECCCEEEEETTEEE
T ss_pred             eccccccccccccCcccccccCCcc
Confidence            5555544444433334444555543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=1.4e-06  Score=54.80  Aligned_cols=28  Identities=29%  Similarity=0.612  Sum_probs=26.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|+++|++|+|||+.+.+||...
T Consensus        56 L~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          56 LAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             HHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             HHHHHHHHhhccceEEEeccCccCceEE
Confidence            6899999999999999999999999764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=1.9e-06  Score=54.23  Aligned_cols=28  Identities=29%  Similarity=0.279  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCC-------CcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQG-------HEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G-------~~V~v~E~~~~~GG~~~   28 (87)
                      |+||++|+++|       ++|+|||+.+++||.++
T Consensus        15 L~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2          15 FFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             HHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            68999999988       58999999999999774

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.66  E-value=6.2e-05  Score=47.48  Aligned_cols=50  Identities=22%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |+||..|+++|++|+||||++.++...       +    .|    ....++..++++++|+....
T Consensus        17 l~~A~~L~~~G~~v~v~Er~~~~~~~~-------~----~g----~~~~~~~~~~l~~~g~~~~~   66 (265)
T d2voua1          17 LTAALMLRDAGVDVDVYERSPQPLSGF-------G----TG----IVVQPELVHYLLEQGVELDS   66 (265)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSSCCCC-------S----CE----EECCHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCCC-------c----eE----EEECccHHHHHHHcCcchhh
Confidence            589999999999999999988765321       1    11    11247888999999987543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.59  E-value=5.5e-06  Score=52.32  Aligned_cols=29  Identities=38%  Similarity=0.339  Sum_probs=25.3

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||.+|+++  |++|+|||+.+++||.++.
T Consensus        14 l~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2          14 FYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            6899999875  7899999999999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.55  E-value=1.9e-05  Score=48.25  Aligned_cols=28  Identities=29%  Similarity=0.525  Sum_probs=25.3

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~   28 (87)
                      |+||..|+++|+ +|+|||+++++||..+
T Consensus        17 l~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4          17 ISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             HHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             HHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            689999999999 5999999999999664

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=97.47  E-value=1.8e-05  Score=51.47  Aligned_cols=29  Identities=28%  Similarity=0.231  Sum_probs=25.6

Q ss_pred             ChhHHHHhh-CCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLD-QGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~-~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||++|++ .|++|+|+|+++.+||.+.+
T Consensus        46 L~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          46 LSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             HHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             HHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            589999987 59999999999999997753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.40  E-value=3.5e-05  Score=49.00  Aligned_cols=29  Identities=24%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||..|+++|++|+|+|+++++||....
T Consensus        62 l~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          62 SEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             HHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             HHHHHHHHHhccceeeEeeccccCCcccc
Confidence            58999999999999999999999997754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.38  E-value=4.2e-05  Score=47.71  Aligned_cols=25  Identities=24%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||++|+++|++|+|+|+....+|
T Consensus        19 l~~A~~L~~~G~~V~vier~~~~~~   43 (268)
T d1c0pa1          19 LSSALILARKGYSVHILARDLPEDV   43 (268)
T ss_dssp             HHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            6899999999999999999775444

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.37  E-value=0.00025  Score=44.56  Aligned_cols=48  Identities=19%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELLDQGH-EVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+++|+ +|+|+|+++.++...+..        .     +   .++..++++++++.+.
T Consensus        14 l~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i--------~-----l---~~~~~~~l~~~~~~~~   62 (288)
T d3c96a1          14 LSCALALHQAGIGKVTLLESSSEIRPLGVGI--------N-----I---QPAAVEALAELGLGPA   62 (288)
T ss_dssp             HHHHHHHHHTTCSEEEEEESSSSCCCCSCEE--------E-----E---CHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCCCceEE--------E-----E---CHHHHHHHHHcCchhh
Confidence            689999999996 999999999876432221        1     1   2678889999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=2.9e-05  Score=48.47  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.+|++.|++|+|+|+++.+||.|.
T Consensus        18 l~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1          18 YVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             HHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            5799999999999999999999999774

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=97.34  E-value=3.8e-05  Score=48.51  Aligned_cols=27  Identities=19%  Similarity=0.350  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|+++|++|+|+|+.+.+||++
T Consensus        15 l~aA~~la~~G~~V~liEk~~~~g~~~   41 (251)
T d2i0za1          15 LMAAIGAAEEGANVLLLDKGNKLGRKL   41 (251)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCcce
Confidence            579999999999999999999998754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=4.1e-05  Score=49.00  Aligned_cols=26  Identities=27%  Similarity=0.420  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||+.|+++|++|+|+|+.+.+|++
T Consensus        17 l~aA~~la~~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1          17 LFCAAQLAKLGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            57999999999999999999999844

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.26  E-value=6.2e-05  Score=50.03  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||++|+++|++|+|||+++.+||.
T Consensus        20 l~~a~~L~~~G~~v~i~Ek~~~iGGt   45 (298)
T d1w4xa1          20 LYALYRLRELGRSVHVIETAGDVGGV   45 (298)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTH
T ss_pred             HHHHHHHHhCCCCEEEEEcCCCcccc
Confidence            58999999999999999999999995

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.24  E-value=6.7e-05  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |++|++|+++|++|+|+|+.+..+|
T Consensus        17 ls~A~~La~~G~~V~vlE~~~~~~g   41 (276)
T d1ryia1          17 SAIAYYLAKENKNTALFESGTMGGR   41 (276)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            5899999999999999999764444

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.22  E-value=4.5e-05  Score=47.33  Aligned_cols=28  Identities=21%  Similarity=0.336  Sum_probs=25.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.++++.|.+|+|+|+++.+||.|.
T Consensus        16 l~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1          16 YVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             HHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            5799999999999999999999999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.20  E-value=5.5e-05  Score=47.62  Aligned_cols=28  Identities=32%  Similarity=0.377  Sum_probs=25.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.+|++.|++|+|+|+.+.+||.|.
T Consensus        19 lsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1          19 YSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             HHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            6899999999999999999999999663

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.17  E-value=5.1e-05  Score=48.70  Aligned_cols=27  Identities=15%  Similarity=0.052  Sum_probs=23.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |++|++|+++|++|+|+|+.+..++..
T Consensus        16 ls~A~~La~~G~~V~viE~~~~~~~~~   42 (281)
T d2gf3a1          16 MAAGYQLAKQGVKTLLVDAFDPPHTNG   42 (281)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCSSCSSS
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCccc
Confidence            589999999999999999988776543

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=5.3e-05  Score=49.95  Aligned_cols=29  Identities=24%  Similarity=0.134  Sum_probs=25.6

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||++|+++  |++|+|+|+++.+||.++.
T Consensus        63 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          63 LSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             HHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             HHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            5899999964  9999999999999998753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.03  E-value=0.00014  Score=47.24  Aligned_cols=27  Identities=33%  Similarity=0.516  Sum_probs=24.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++|.+|+|+||.+..||..
T Consensus        29 l~aA~~la~~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          29 FSAAISATDSGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             HHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            589999999999999999999998854

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=96.92  E-value=0.00019  Score=47.17  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=24.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||+.|+++|++|+|+||.+..||..
T Consensus        36 l~aA~~la~~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          36 LAAAVSARDAGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             HHHHHHHHTTTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence            589999999999999999999999854

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.80  E-value=0.00025  Score=46.82  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=23.3

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|+++|  ++|+||||++.+||.-
T Consensus        17 l~~A~~L~~~~~~~~v~vfEk~~~iGG~W   45 (335)
T d2gv8a1          17 LVTAKALLAEKAFDQVTLFERRGSPGGVW   45 (335)
T ss_dssp             HHHHHHHHTTTCCSEEEEECSSSSSSTTC
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCCcc
Confidence            57999998776  6999999999999853

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.78  E-value=0.0002  Score=48.82  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=24.7

Q ss_pred             ChhHHHHhh------CCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLD------QGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~------~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||+.|++      +|++|+|+||+..+|.++.
T Consensus        45 lsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          45 LSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             HHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            589999997      8999999999999987653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.69  E-value=0.00033  Score=44.91  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=35.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADENL   65 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l   65 (87)
                      |++|..|+++|++|+|+|+++..+..      .     +.++..+   .++.+++++++|+.+.+
T Consensus        15 l~~A~~L~~~G~~v~vlE~~~~~~~~------~-----~~~~~~l---~~~~~~~l~~lg~~~~l   65 (292)
T d1k0ia1          15 LLLGQLLHKAGIDNVILERQTPDYVL------G-----RIRAGVL---EQGMVDLLREAGVDRRM   65 (292)
T ss_dssp             HHHHHHHHHHTCCEEEECSSCHHHHH------T-----CCCCCEE---CHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHHCCCCEEEEeCCCCCCCC------C-----CceEEEE---CHHHHHHHHHcCchHHH
Confidence            68999999999999999998754320      0     0011112   26789999999997643

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=96.53  E-value=0.00042  Score=45.51  Aligned_cols=27  Identities=19%  Similarity=0.367  Sum_probs=24.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||++|+++|.+|+|+||.+..||..
T Consensus        32 l~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          32 FNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             HHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            589999999999999999999998753

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=96.46  E-value=0.00041  Score=45.05  Aligned_cols=48  Identities=17%  Similarity=0.099  Sum_probs=34.0

Q ss_pred             ChhHHHHh-----hCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCCCc
Q 034688            1 MSTAVELL-----DQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGADEN   64 (87)
Q Consensus         1 L~aA~~L~-----~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   64 (87)
                      |++|..|+     ++|++|+|||+++.+.-..+      +..       +   .++.+++++++|+.+.
T Consensus        20 l~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r------~~~-------l---~~~~~~~L~~lGl~~~   72 (360)
T d1pn0a1          20 LMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQ------ADG-------L---QCRTLESLKNLGLADK   72 (360)
T ss_dssp             HHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCS------CCE-------E---CHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHhcccccCCCcEEEEcCCCCCCcCCe------EEE-------E---CHHHHHHHHHcCChHH
Confidence            57899996     58999999999886642111      111       1   3778999999998653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00044  Score=42.71  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=23.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..+++.|.+|+|+|++ .+||.|
T Consensus        15 ~~aA~~a~~~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1          15 IASINRAAMYGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             HHHHHHHHTTTCCEEEEESS-CTTHHH
T ss_pred             HHHHHHHHHCCCEEEEEecc-CcCCeE
Confidence            57999999999999999985 699965

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.12  E-value=0.00095  Score=43.53  Aligned_cols=25  Identities=16%  Similarity=0.166  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      |+||++|+++|.+|+|+|+.+..||
T Consensus        18 l~AAl~aa~~G~~V~liEK~~~~~g   42 (336)
T d2bs2a2          18 LRAAVATQQKGLSTIVLSLIPVKRS   42 (336)
T ss_dssp             HHHHHHHHTTTCCEEEECSSCGGGS
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCC
Confidence            6899999999999999999887765

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=96.07  E-value=0.0014  Score=42.72  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +++|.+|+++|++|+|+|+.....+
T Consensus        17 ~v~A~~La~~G~kVlvLEaG~~~~~   41 (379)
T d2f5va1          17 CTYARELVGAGYKVAMFDIGEIDSG   41 (379)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             HHHHHHHhhCCCeEEEEecCCCCCC
Confidence            4789999999999999999665543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.03  E-value=0.001  Score=42.41  Aligned_cols=26  Identities=23%  Similarity=0.323  Sum_probs=23.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      ++||.++++.|.+|.|+|+. .+||.|
T Consensus        14 ~~aA~~aa~~G~~V~liE~~-~~GGtc   39 (259)
T d1onfa1          14 MAAARRAARHNAKVALVEKS-RLGGTC   39 (259)
T ss_dssp             HHHHHHHHHTTCCEEEEESS-STTHHH
T ss_pred             HHHHHHHHHCCCeEEEEecC-CCCCeE
Confidence            47999999999999999984 699976

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.92  E-value=0.0014  Score=41.83  Aligned_cols=27  Identities=22%  Similarity=0.234  Sum_probs=24.8

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      +.||..|++.|.+|+|+|+.+.+||.|
T Consensus        55 ~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          55 RFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             HHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             HHHHHHHHHCCCeEEEEeccCcccccc
Confidence            468999999999999999999999976

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.85  E-value=0.0014  Score=40.03  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=21.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||.+|++.|++|+|+|+....+++
T Consensus        16 l~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1          16 YVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             HHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             HHHHHHHHHCCCeEEEEecccCCCcc
Confidence            58999999999999999997655443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.82  E-value=0.0022  Score=41.17  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=19.1

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCC
Q 034688            1 MSTAVELLDQGH-EVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~   22 (87)
                      |++|++|+++|. +|+|+||++.
T Consensus        14 ~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2          14 TNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSCT
T ss_pred             HHHHHHHHHcCCCcEEEEeCCCC
Confidence            589999999996 7999999853

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=95.80  E-value=0.0021  Score=42.32  Aligned_cols=20  Identities=20%  Similarity=0.295  Sum_probs=18.2

Q ss_pred             hhHHHHhhCCCcEEEEeeCC
Q 034688            2 STAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~   21 (87)
                      .+|++|+++|++|+|+|+..
T Consensus        16 v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1          16 VSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             HHHHHHHHTTCCEEEEESSC
T ss_pred             HHHHHHHHCcCeEEEEecCC
Confidence            68999999999999999954

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.65  E-value=0.0019  Score=39.53  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||.++++.|.+|+|+|+.. +||.|
T Consensus        16 l~aA~~aar~G~kV~vIEk~~-~GG~~   41 (223)
T d1ebda1          16 YVAAIRAAQLGQKVTIVEKGN-LGGVC   41 (223)
T ss_dssp             HHHHHHHHHTTCCEEEEESSC-TTHHH
T ss_pred             HHHHHHHHHCCCEEEEEecCC-CCcce
Confidence            579999999999999999854 67755

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.57  E-value=0.0014  Score=40.53  Aligned_cols=26  Identities=19%  Similarity=0.210  Sum_probs=22.9

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..+++.|.+|+|+|+. .+||.|
T Consensus        18 l~aA~~aa~~G~~V~liE~~-~~GG~c   43 (220)
T d1lvla1          18 YVAAIRAGQLGIPTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             HHHHHHHHHHTCCEEEECSS-CTTHHH
T ss_pred             HHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence            57999999999999999976 689875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=95.56  E-value=0.0028  Score=41.87  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=18.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCC
Q 034688            1 MSTAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~   21 (87)
                      +++|++|+++|++|+|+|+..
T Consensus        20 ~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1          20 AVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             HHHHHHHHHTTCCEEEECSSC
T ss_pred             HHHHHHHHHCCCeEEEEeCCC
Confidence            368999999999999999853

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0024  Score=42.03  Aligned_cols=26  Identities=12%  Similarity=0.150  Sum_probs=23.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      |+||.+++++|.+|+|+||.+..||.
T Consensus        20 l~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2          20 MRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             HHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            68999999999999999999988764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0027  Score=38.92  Aligned_cols=26  Identities=19%  Similarity=0.348  Sum_probs=22.0

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||.++++.|.+|+|+|+ ..+||-|
T Consensus        16 ~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1          16 LASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             HHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             HHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            5799999999999999998 4567754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.0037  Score=38.68  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=20.2

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |+||.++++.|++|+|+|+.+..
T Consensus        16 l~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1          16 LAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             HHHHHHHGGGCCCEEEECCCCCC
T ss_pred             HHHHHHHHHCCCeEEEEeccCCC
Confidence            58999999999999999986653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0036  Score=37.27  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=22.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVA   28 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~   28 (87)
                      |+||.++++.|.+|+|+|+  ++||++.
T Consensus        14 l~AAi~aar~G~~v~iie~--~~gg~~~   39 (184)
T d1fl2a1          14 AAAAIYSARKGIRTGLMGE--RFGGQIL   39 (184)
T ss_dssp             HHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             HHHHHHHHHcCCeEEEEEE--ecCCccc
Confidence            5799999999999999996  4788775

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.004  Score=40.25  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..+++.| +|+|+||.+..||.+
T Consensus        20 l~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2          20 LSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             HHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             HHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            58999998888 999999999988854

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0025  Score=38.60  Aligned_cols=29  Identities=10%  Similarity=-0.095  Sum_probs=23.7

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      |+||.+|++.|.+|+|+|+.+..|....+
T Consensus        18 l~AA~~~ar~g~~v~iie~~~~~g~~~~~   46 (190)
T d1trba1          18 YTAAVYAARANLQPVLITGMEKGGQLTTT   46 (190)
T ss_dssp             HHHHHHHHTTTCCCEEECCSSTTGGGGGC
T ss_pred             HHHHHHHHHcCCceEEEEeeccccccccc
Confidence            58999999999999999987775555443

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.44  E-value=0.01  Score=38.66  Aligned_cols=27  Identities=19%  Similarity=0.096  Sum_probs=21.8

Q ss_pred             ChhHHHHhh----CCCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLD----QGHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~----~G~~V~v~E~~~~~GG~~   27 (87)
                      |+||..|++    +|.+|+|+||.+..||..
T Consensus        34 l~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          34 CGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             HHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             HHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            578888864    799999999998877643

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.44  E-value=0.03  Score=31.40  Aligned_cols=24  Identities=21%  Similarity=0.111  Sum_probs=21.0

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            2 STAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      -+|..|++.|.+|+|+|+.+++..
T Consensus        36 E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          36 ELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSSST
T ss_pred             eeeeeecccccEEEEEEecceecc
Confidence            368889999999999999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.29  E-value=0.018  Score=34.77  Aligned_cols=23  Identities=9%  Similarity=-0.107  Sum_probs=20.6

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCc
Q 034688            1 MSTAVELLDQGHEVDIYELRSFI   23 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~   23 (87)
                      |+||.+|+++|.+|+|+|+....
T Consensus        18 l~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1          18 HTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             HHHHHHHHHTTCCCEEECCSSBT
T ss_pred             HHHHHHHHHcCCcEEEEEeeccc
Confidence            57999999999999999988764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.26  E-value=0.0021  Score=39.51  Aligned_cols=20  Identities=25%  Similarity=0.029  Sum_probs=17.3

Q ss_pred             ChhHHHHhhCCCcEEEEeeC
Q 034688            1 MSTAVELLDQGHEVDIYELR   20 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~   20 (87)
                      |++|++|+++|++|+|+|+.
T Consensus        13 lstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1          13 LSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             HHHHHHHHHHHTTTSSSCEE
T ss_pred             HHHHHHHHHCCCCceEEeee
Confidence            68999999999988888774

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.16  E-value=0.028  Score=32.88  Aligned_cols=25  Identities=32%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      .+|..|+++|.+|+|+|+.++++-.
T Consensus        55 e~A~~la~~G~~Vtlv~~~~~~~~~   79 (156)
T d1djqa2          55 SLAEKLATAGHEVTIVSGVHLANYM   79 (156)
T ss_dssp             HHHHHHHHTTCEEEEEESSCTTTHH
T ss_pred             HHHHHHHHcCCeEEEEecCCccccc
Confidence            5788999999999999999998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.03  Score=31.53  Aligned_cols=44  Identities=9%  Similarity=0.043  Sum_probs=31.6

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEEEeccCCeEEeeeeEEEeCCChHHHHHHHHcCCC
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVASFVCKRGNHIEISLHVFFGCYNNLFRLTKKVGAD   62 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~   62 (87)
                      -+|..|++.|.+|+|+|+++++....    ++     +        -...+.+.+++.|+.
T Consensus        35 E~A~~l~~~G~~Vtlve~~~~~l~~~----d~-----~--------~~~~~~~~l~~~GV~   78 (116)
T d1gesa2          35 ELGGVINGLGAKTHLFEMFDAPLPSF----DP-----M--------ISETLVEVMNAEGPQ   78 (116)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSSSTTS----CH-----H--------HHHHHHHHHHHHSCE
T ss_pred             HHHHHhhccccEEEEEeecchhhhhc----ch-----h--------hHHHHHHHHHHCCCE
Confidence            46888999999999999999986422    10     0        113467788888875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.65  E-value=0.045  Score=31.12  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            2 STAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      -+|..|++.|.+|+|+|+.+++-+
T Consensus        44 E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          44 EAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             HHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             HHHHHhhccceEEEEEEecCcccc
Confidence            368889999999999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.45  E-value=0.048  Score=31.04  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCce
Q 034688            3 TAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      +|..|++.|.+|+|+|+++++-++
T Consensus        45 ~A~~l~~~g~~Vtli~~~~~~l~~   68 (121)
T d1d7ya2          45 LAATARTAGVHVSLVETQPRLMSR   68 (121)
T ss_dssp             HHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             HHHHhhcccceEEEEeeccccccc
Confidence            678899999999999999998653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.36  E-value=0.034  Score=31.18  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            2 STAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      -+|..|++.|.+|+|+|+++++..
T Consensus        35 E~A~~l~~~g~~Vtlve~~~~il~   58 (115)
T d1lvla2          35 ELGIAYRKLGAQVSVVEARERILP   58 (115)
T ss_dssp             HHHHHHHHHTCEEEEECSSSSSST
T ss_pred             HHHHHHhhcccceEEEeeeccccc
Confidence            367888999999999999998864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.86  E-value=0.059  Score=30.46  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.7

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            2 STAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      -+|..|++.|.+|+|+|+++++-+
T Consensus        46 E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          46 ELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             HHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             HHHHHhhcccceEEEEeccccccC
Confidence            367889999999999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.60  E-value=0.066  Score=30.36  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCc
Q 034688            3 TAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +|..|++.|.+|+|+|+++++-.
T Consensus        38 ~A~~l~~lG~~Vtii~~~~~~l~   60 (122)
T d1v59a2          38 MGSVYSRLGSKVTVVEFQPQIGA   60 (122)
T ss_dssp             HHHHHHHTTCEEEEECSSSSSSS
T ss_pred             HHHHHHhhCcceeEEEeccccch
Confidence            67888999999999999999864

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.56  E-value=0.16  Score=35.70  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             eEEeeeeEEEeCCChHHHHHHHHcCCCCceeeeCceeeEEccCCeEEEE
Q 034688           36 NHIEISLHVFFGCYNNLFRLTKKVGADENLLMKDHTHKFVNKGGEIGGI   84 (87)
Q Consensus        36 ~~~d~G~~~~~~~~~~~~~l~~~lg~~~~l~~~~~~~~~~~~~g~~~~~   84 (87)
                      +-+|+.+..++.+. .+.+++-.-++...+.+..-..+|.+.+|++..+
T Consensus       222 ~niDL~Pk~l~a~g-~lv~~Li~S~v~rYlEFk~v~~~~v~~~g~~~~V  269 (491)
T d1vg0a1         222 FNIDLVSKLLYSRG-LLIDLLIKSNVSRYAEFKNITRILAFREGTVEQV  269 (491)
T ss_dssp             CCEESSCCCEESSS-HHHHHHHHHTGGGGCCEEECCEEEEESSSSEEEC
T ss_pred             ccccccchheeccc-HHHHHHHHcChhhheeEEEeceEEEecCCeEEEC
Confidence            34566666565554 4666677777877788877777788888877653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.44  E-value=0.077  Score=29.90  Aligned_cols=23  Identities=17%  Similarity=0.021  Sum_probs=20.4

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCc
Q 034688            3 TAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      .|..|++.|.+|+|+|+++++-.
T Consensus        37 ~A~~l~~~G~~Vtiv~~~~~ll~   59 (119)
T d3lada2          37 LGSVWARLGAEVTVLEAMDKFLP   59 (119)
T ss_dssp             HHHHHHHTTCEEEEEESSSSSST
T ss_pred             HHHHHHHcCCceEEEEeecccCC
Confidence            68889999999999999998754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.39  E-value=0.066  Score=30.21  Aligned_cols=22  Identities=14%  Similarity=-0.011  Sum_probs=19.5

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcC
Q 034688            3 TAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +|..|++.|.+|+|+|+++++-
T Consensus        37 ~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          37 LINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             HHHHHHTTTCEEEEECSSSSSC
T ss_pred             HHHHHHhccccceeeehhcccc
Confidence            6788889999999999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.053  Score=29.30  Aligned_cols=24  Identities=17%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             ChhHHHHhhCCCcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      +++|..|++.|.+|+++|.+...-
T Consensus        18 ~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1          18 LSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             HHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             HHHHHHHHHCCCEEEEeeCCcCch
Confidence            478999999999999999876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.23  E-value=0.055  Score=31.18  Aligned_cols=25  Identities=8%  Similarity=0.129  Sum_probs=21.7

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCce
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGK   26 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~   26 (87)
                      -+|..|++.|.+|+|+|+++++-.+
T Consensus        49 E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          49 EVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             HHHHHHHhhCcceeeeeeccccccc
Confidence            4688899999999999999998663

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=91.18  E-value=0.066  Score=35.32  Aligned_cols=20  Identities=25%  Similarity=0.243  Sum_probs=17.7

Q ss_pred             hhHHHHhhCCCcEEEEeeCC
Q 034688            2 STAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~   21 (87)
                      .+|.+|+++|++|+|+|+..
T Consensus        16 v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1          16 IAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             HHHHHHHHTTCCEEEECSSC
T ss_pred             HHHHHHhhCCCeEEEEEccC
Confidence            46889999999999999873

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.097  Score=29.66  Aligned_cols=23  Identities=13%  Similarity=-0.039  Sum_probs=19.9

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCc
Q 034688            3 TAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      +|..|++.|.+|+|+|+++++-.
T Consensus        37 ~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          37 MAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             HHHHHHHTTCEEEEECSSSSSCT
T ss_pred             HHHHHhcCCcEEEEEeecccccc
Confidence            57888899999999999998743

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.35  E-value=0.071  Score=30.21  Aligned_cols=24  Identities=25%  Similarity=0.109  Sum_probs=20.7

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCc
Q 034688            2 STAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      -.|..|++.|.+|+|+|+++++-.
T Consensus        39 E~A~~~~~~G~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          39 EMGSVWGRIGSEVTVVEFASEIVP   62 (123)
T ss_dssp             HHHHHHHHHTCEEEEECSSSSSST
T ss_pred             HHHHHHHhcCCeEEEEEEccccCc
Confidence            367888999999999999998854

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.01  E-value=0.032  Score=34.63  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=19.7

Q ss_pred             ChhHHHHhhC---CCcEEEEeeCCCcCceE
Q 034688            1 MSTAVELLDQ---GHEVDIYELRSFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~---G~~V~v~E~~~~~GG~~   27 (87)
                      |+||.++++.   +.+|+|+|+ ..+||.|
T Consensus        14 ~~aA~~aa~~~~~~~~V~liEk-~~~GG~c   42 (233)
T d1xdia1          14 YEAALVAATSHPETTQVTVIDC-DGIGGAA   42 (233)
T ss_dssp             HHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred             HHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence            4678777664   568999997 6789965

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.95  E-value=0.095  Score=30.33  Aligned_cols=21  Identities=24%  Similarity=0.050  Sum_probs=18.3

Q ss_pred             hhHHHHhhCCCcEEEEeeCCC
Q 034688            2 STAVELLDQGHEVDIYELRSF   22 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~   22 (87)
                      .+|..|+++|++|+|+++...
T Consensus        16 ~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1          16 PTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             HHHHHHHTTTCEEEEEESCHH
T ss_pred             HHHHHHHhCCCEEEEEECChH
Confidence            478999999999999997655

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.057  Score=34.99  Aligned_cols=26  Identities=4%  Similarity=0.074  Sum_probs=21.7

Q ss_pred             ChhHHHHhhC--CCcEEEEeeCCCcCce
Q 034688            1 MSTAVELLDQ--GHEVDIYELRSFIGGK   26 (87)
Q Consensus         1 L~aA~~L~~~--G~~V~v~E~~~~~GG~   26 (87)
                      |+||.+++++  |.+|+|+||....||.
T Consensus        18 l~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2          18 LRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             HHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            5789999885  7799999999877664

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.92  E-value=0.082  Score=31.98  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             ChhHHHHhhCCC-cEEEEeeC--------CCcCceE
Q 034688            1 MSTAVELLDQGH-EVDIYELR--------SFIGGKV   27 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~--------~~~GG~~   27 (87)
                      |+||.++++.|. .|+|.|+.        +.+||.|
T Consensus        16 l~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c   51 (238)
T d1aoga1          16 LEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTC   51 (238)
T ss_dssp             HHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHH
T ss_pred             HHHHHHHHHcCCCEEEEEEeecccCccccccccccc
Confidence            579999999886 68999975        4577764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=88.36  E-value=0.081  Score=31.08  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=17.8

Q ss_pred             hhHHHHhhCCCcEEEEeeCC
Q 034688            2 STAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~   21 (87)
                      +.|..|+++|++|.+|++.+
T Consensus        15 ~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2          15 AFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             HHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHCCCEEEEEECCH
Confidence            57889999999999999864

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.85  E-value=0.056  Score=33.25  Aligned_cols=22  Identities=9%  Similarity=0.187  Sum_probs=18.4

Q ss_pred             ChhHHHHhhCCC-cEEEEeeCCC
Q 034688            1 MSTAVELLDQGH-EVDIYELRSF   22 (87)
Q Consensus         1 L~aA~~L~~~G~-~V~v~E~~~~   22 (87)
                      |+||.++++.|. .|.|+|+...
T Consensus        16 ~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1          16 LEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             HHHHHHHHHHHCCCEEEEESCSS
T ss_pred             HHHHHHHHHcCCCEEEEEEEecc
Confidence            578999999885 6999998875

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=87.37  E-value=0.14  Score=34.12  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.1

Q ss_pred             hhHHHHhhCC-CcEEEEeeCCC
Q 034688            2 STAVELLDQG-HEVDIYELRSF   22 (87)
Q Consensus         2 ~aA~~L~~~G-~~V~v~E~~~~   22 (87)
                      ..|.+|+++| ++|+|+|+.+.
T Consensus        38 vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          38 TVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCC
T ss_pred             HHHHHHHHCCCCeEEEEcCCCC
Confidence            4688999988 79999999964

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=87.06  E-value=0.14  Score=33.91  Aligned_cols=21  Identities=29%  Similarity=0.303  Sum_probs=17.4

Q ss_pred             hhHHHHhhCC-CcEEEEeeCCC
Q 034688            2 STAVELLDQG-HEVDIYELRSF   22 (87)
Q Consensus         2 ~aA~~L~~~G-~~V~v~E~~~~   22 (87)
                      ..|.+|++++ ++|+|+|+.+.
T Consensus        31 vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          31 TTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             HHHHHHTTSTTCCEEEEESSCC
T ss_pred             HHHHHHHHCCCCeEEEECCCCC
Confidence            4688999876 89999999853

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=0.34  Score=27.70  Aligned_cols=28  Identities=25%  Similarity=0.030  Sum_probs=22.3

Q ss_pred             hhHHHHhhCCCcEEEEeeCCCcCceEEE
Q 034688            2 STAVELLDQGHEVDIYELRSFIGGKVAS   29 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~~~GG~~~s   29 (87)
                      ..|..|+++|++|+++.+.+...-....
T Consensus        14 ~~a~~L~~~G~~V~~~~r~~~~~~~~~~   41 (167)
T d1ks9a2          14 LWLTALCKQGHEVQGWLRVPQPYCSVNL   41 (167)
T ss_dssp             HHHHHHHHTTCEEEEECSSCCSEEEEEE
T ss_pred             HHHHHHHHCCCceEEEEcCHHHhhhhcc
Confidence            3588999999999999998876555443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.38  E-value=0.26  Score=27.92  Aligned_cols=23  Identities=13%  Similarity=0.117  Sum_probs=20.2

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcCc
Q 034688            3 TAVELLDQGHEVDIYELRSFIGG   25 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~GG   25 (87)
                      .|..|++.|.+|+|+|+++++-.
T Consensus        41 ~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          41 MGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             HHHHHHHHTCEEEEECSSSSSST
T ss_pred             HHHHhhcCCCEEEEEEeeccccc
Confidence            57778889999999999998876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.73  E-value=0.58  Score=26.16  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=17.8

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcC
Q 034688            3 TAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      .|..|++.|.+|+|+++++.+.
T Consensus        35 ~A~~l~~lG~~Vtii~~~~~l~   56 (122)
T d1h6va2          35 CAGFLAGIGLDVTVMVRSILLR   56 (122)
T ss_dssp             HHHHHHHTTCCEEEEESSSSST
T ss_pred             HHHHHhhcCCeEEEEEechhhc
Confidence            5778889999999999765443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=80.29  E-value=0.3  Score=27.72  Aligned_cols=24  Identities=17%  Similarity=-0.042  Sum_probs=19.0

Q ss_pred             ChhHHHHhhCC--CcEEEEeeCCCcC
Q 034688            1 MSTAVELLDQG--HEVDIYELRSFIG   24 (87)
Q Consensus         1 L~aA~~L~~~G--~~V~v~E~~~~~G   24 (87)
                      |.+|..|++.+  .+|+|+|+++...
T Consensus        15 ~e~A~~l~~~~~~~~Vtlie~~~~~~   40 (186)
T d1fcda1          15 ATAAKYIKLADPSIEVTLIEPNTDYY   40 (186)
T ss_dssp             HHHHHHHHHHCTTSEEEEECSCSCEE
T ss_pred             HHHHHHHHHcCCCCcEEEEECCCccc
Confidence            46888998877  4899999988643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=80.09  E-value=0.7  Score=25.29  Aligned_cols=22  Identities=5%  Similarity=-0.082  Sum_probs=19.5

Q ss_pred             hHHHHhhCCCcEEEEeeCCCcC
Q 034688            3 TAVELLDQGHEVDIYELRSFIG   24 (87)
Q Consensus         3 aA~~L~~~G~~V~v~E~~~~~G   24 (87)
                      .|..|++.|.+|+++|+++++.
T Consensus        37 ~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          37 YGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             HHHHHHHTTCEEEEECSSCTTT
T ss_pred             HHHHHHhcchhheEeeccchhh
Confidence            5778899999999999998876

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=80.07  E-value=0.6  Score=27.48  Aligned_cols=20  Identities=15%  Similarity=0.232  Sum_probs=17.3

Q ss_pred             hhHHHHhhCCCcEEEEeeCC
Q 034688            2 STAVELLDQGHEVDIYELRS   21 (87)
Q Consensus         2 ~aA~~L~~~G~~V~v~E~~~   21 (87)
                      ..|..|.++|++|.+|++.+
T Consensus        16 ~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2          16 NLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             HHHHHHHHTTCCEEEECSST
T ss_pred             HHHHHHHHCCCeEEEEcCCH
Confidence            45889999999999999765