Citrus Sinensis ID: 034691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALESGFWTFVDMASGKYLWRHLGSSSKRSL
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccEEEEccccHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHEHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEcHcHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MCPLRLILIFLSATLAGFFVIrnlkspqqqlsddvlldaddstdttknqspcsKVRLALESGFWTFVDMASGKYLWRhlgssskrsl
Flexible Loop (DISEMBL)
MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDStdttknqspcskvrLALESGFWTFVDMASGKYLwrhlgssskrsl
Low Complexity Region (SEG)
MCPLRLILIFLSATLAGFFVIRNLKspqqqlsddvlldaddstdttKNQSPCSKVRLALESGFWTFVDMASGKYLWRHLGSSSKRSL
Disordered region (IsUnstruct)
**PLRLILIFLSATLAGFFVIRNL*****************************KVRLALESGFWTFVDMASGKYLWRHL********
Disordered Region (DISOPRED)
MCPLRLILIFLSATLAGFFVIRNLKSP******************************ALESGFWTFVDMASGKYLWR***S******
Disordered Region (DISEMBL)
MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDAD***********CSKVRLALESGFWTFVDMASGKYLWRH*********
Disordered Region (DISPRO)
MCPLRLILIFLSATLAGFFVIRNLK*************************PCSKVRLALESGFWTFVDMASGKYLWRHLGS******
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALESGFWTFVDMASGKYLWRHLGSSSKRSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
356570092	89	PREDICTED: uncharacterized protein LOC10	0.965	0.943	0.659	6e-23
297745780	119	unnamed protein product [Vitis vinifera]	0.977	0.714	0.666	6e-21
356539698	89	PREDICTED: uncharacterized protein LOC10	0.965	0.943	0.615	7e-21
225434367	87	PREDICTED: uncharacterized protein LOC10	0.977	0.977	0.666	1e-20
357495497	77	hypothetical protein MTR_5g098280 [Medic	0.885	1.0	0.662	1e-20
357491435	91	hypothetical protein MTR_5g075070 [Medic	0.977	0.934	0.604	1e-19
388522359	98	unknown [Lotus japonicus]	0.942	0.836	0.604	7e-19
297793373	85	hypothetical protein ARALYDRAFT_495954 [	0.965	0.988	0.604	2e-18
18424097	85	Methyltransferase-related protein [Arabi	0.965	0.988	0.593	2e-18
21553848	85	unknown [Arabidopsis thaliana]	0.965	0.988	0.593	3e-18

>gi|356570092|ref|XP_003553225.1| PREDICTED: uncharacterized protein LOC100306619 [Glycine max] gi|255629099|gb|ACU14894.1| unknown [Glycine max]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 60/91 (65%), Positives = 70/91 (76%), Gaps = 7/91 (7%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDAD----DSTDTTKNQSPCSKVR 56
          MCPLRLILIFLSATLAGFFV+RNL+S  Q   DD ++  +    DS+D + N +  SKVR
Sbjct: 1  MCPLRLILIFLSATLAGFFVLRNLRSQPQIEEDDAVVPPNPKISDSSDASSNGT--SKVR 58

Query: 57 LALESGFWTFVDMASGKYLWRHLGS-SSKRS 86
            +ESGFWTFVDMASG+YLWRHL S SSKRS
Sbjct: 59 AVVESGFWTFVDMASGRYLWRHLVSNSSKRS 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745780|emb|CBI15836.3| unnamed protein product [Vitis vinifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 63/87 (72%), Gaps = 2/87 (2%)

Query: 1   MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDAD-DSTDTTKNQSPCSKVRLAL 59
           MCPLRLILIFLSATLAGFFV+RNLKS Q Q+  D   D D D  D   +    SKV  A+
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKS-QPQVVADAPADGDRDDNDPHDSTPKSSKVLSAI 91

Query: 60  ESGFWTFVDMASGKYLWRHLGSSSKRS 86
            SGFWT VDMASG+YLWRHL SSSK S
Sbjct: 92  GSGFWTCVDMASGRYLWRHLVSSSKPS 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539698|ref|XP_003538332.1| PREDICTED: uncharacterized protein LOC100306028 [Glycine max] gi|255627323|gb|ACU14006.1| unknown [Glycine max]

 Score =  104 bits (260), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 7/91 (7%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDAD----DSTDTTKNQSPCSKVR 56
          MCPLR ILIFLSATLAGFFV+RNL+S  Q    D ++  +    DS+D + N +  SK+R
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRSQPQIEEGDAVVPPNPKISDSSDASSNVT--SKLR 58

Query: 57 LALESGFWTFVDMASGKYLWRHL-GSSSKRS 86
            +ESGFWTFVDMASG+YLWRHL  +SSKRS
Sbjct: 59 AVVESGFWTFVDMASGRYLWRHLVCNSSKRS 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434367|ref|XP_002269081.1| PREDICTED: uncharacterized protein LOC100267277 [Vitis vinifera]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 63/87 (72%), Gaps = 2/87 (2%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDAD-DSTDTTKNQSPCSKVRLAL 59
          MCPLRLILIFLSATLAGFFV+RNLKS Q Q+  D   D D D  D   +    SKV  A+
Sbjct: 1  MCPLRLILIFLSATLAGFFVLRNLKS-QPQVVADAPADGDRDDNDPHDSTPKSSKVLSAI 59

Query: 60 ESGFWTFVDMASGKYLWRHLGSSSKRS 86
           SGFWT VDMASG+YLWRHL SSSK S
Sbjct: 60 GSGFWTCVDMASGRYLWRHLVSSSKPS 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495497|ref|XP_003618037.1| hypothetical protein MTR_5g098280 [Medicago truncatula] gi|355519372|gb|AET00996.1| hypothetical protein MTR_5g098280 [Medicago truncatula]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 66/83 (79%), Gaps = 6/83 (7%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60
          MCPLRLILIFLSATLA FFV+RN +S Q ++ DD   D D  ++ + NQ+  SKVR ALE
Sbjct: 1  MCPLRLILIFLSATLAVFFVLRNFRS-QPKIDDD---DEDVVSNPSSNQN--SKVRAALE 54

Query: 61 SGFWTFVDMASGKYLWRHLGSSS 83
          SGFWTF+DMASG+YLWRH+ SSS
Sbjct: 55 SGFWTFLDMASGRYLWRHMVSSS 77

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491435|ref|XP_003616005.1| hypothetical protein MTR_5g075070 [Medicago truncatula] gi|355517340|gb|AES98963.1| hypothetical protein MTR_5g075070 [Medicago truncatula]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 63/91 (69%), Gaps = 6/91 (6%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKS-PQ-----QQLSDDVLLDADDSTDTTKNQSPCSK 54
          MCPLRLILIFLSATLAGFFV+RNL+S PQ     Q   D    +  DS   T N    SK
Sbjct: 1  MCPLRLILIFLSATLAGFFVLRNLRSQPQITELDQNNEDIPEKETLDSAKPTLNAPSKSK 60

Query: 55 VRLALESGFWTFVDMASGKYLWRHLGSSSKR 85
          V+ ALES FWTF+DMASG+YLW+HL  SS +
Sbjct: 61 VKAALESWFWTFIDMASGRYLWKHLVKSSSK 91

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522359|gb|AFK49241.1| unknown [Lotus japonicus]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 66/96 (68%), Gaps = 14/96 (14%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTK---------NQSP 51
          MCPLR ILIFLSATLAGFFV+RNL+S Q   +D   LD +D  +T             + 
Sbjct: 1  MCPLRFILIFLSATLAGFFVLRNLRS-QPHPTD---LDQNDEGNTESSDSANSSSITATS 56

Query: 52 CSKVRLALESGFWTFVDMASGKYLWRHL-GSSSKRS 86
           SKVR+ALESGFWT VDMASG+YLWR L  SSSKRS
Sbjct: 57 KSKVRVALESGFWTLVDMASGRYLWRQLVPSSSKRS 92

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793373|ref|XP_002864571.1| hypothetical protein ARALYDRAFT_495954 [Arabidopsis lyrata subsp. lyrata] gi|297310406|gb|EFH40830.1| hypothetical protein ARALYDRAFT_495954 [Arabidopsis lyrata subsp. lyrata]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 62/86 (72%), Gaps = 2/86 (2%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60
          MCPLRLILIFLSATLAGFFV++ L S      DD   DA+ + D   + S  SKV +A++
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEPADD--DSVSGFSKVGMAMK 58

Query: 61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
          SGFWT VDMASG+YLW +L S SKRS
Sbjct: 59 SGFWTCVDMASGRYLWNNLSSVSKRS 84

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424097|ref|NP_568877.1| Methyltransferase-related protein [Arabidopsis thaliana] gi|33589722|gb|AAQ22627.1| At5g58375 [Arabidopsis thaliana] gi|332009662|gb|AED97045.1| Methyltransferase-related protein [Arabidopsis thaliana]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60
          MCPLRLILIFLSATLAGFFV++ L S      DD   DA+ + D +   S  SKV +A++
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDS--VSGFSKVGMAMK 58

Query: 61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
          SGFWT VDMASG+YLW +L S++KRS
Sbjct: 59 SGFWTCVDMASGRYLWNNLCSNAKRS 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553848|gb|AAM62941.1| unknown [Arabidopsis thaliana]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 63/86 (73%), Gaps = 2/86 (2%)

Query: 1  MCPLRLILIFLSATLAGFFVIRNLKSPQQQLSDDVLLDADDSTDTTKNQSPCSKVRLALE 60
          MCPLRLILIFLSATLAGFFV++ L S      DD   DA+ + D +   S  SKV +A++
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEPADDDS--VSGFSKVGMAMK 58

Query: 61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
          SGFWT VDMASG+YLW +L S++KRS
Sbjct: 59 SGFWTCVDMASGRYLWNNLCSNAKRS 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:505006699	85	AT5G58375 "AT5G58375" [Arabido	0.965	0.988	0.523	1.4e-16
TAIR|locus:4515103566	80	AT5G14602 "AT5G14602" [Arabido	0.908	0.987	0.372	1.4e-09
TAIR|locus:2172384	76	AT5G18150 "AT5G18150" [Arabido	0.862	0.986	0.348	1.4e-09

TAIR|locus:505006699 AT5G58375 "AT5G58375" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 45/86 (52%), Positives = 55/86 (63%)

Query:     1 MCPLRLILIFLSATLAGFFVIRNLKXXXXXXXXXXXXXXXXXXXXXKNQSPCSKVRLALE 60
             MCPLRLILIFLSATLAGFFV++ L                       + S  SKV +A++
Sbjct:     1 MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDD--SVSGFSKVGMAMK 58

Query:    61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
             SGFWT VDMASG+YLW +L S++KRS
Sbjct:    59 SGFWTCVDMASGRYLWNNLCSNAKRS 84

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103566 AT5G14602 "AT5G14602" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 32/86 (37%), Positives = 43/86 (50%)

Query:     1 MCPLRLILIFLSATLAGFFVIRNLKXXXXXXXXXXXXXXXXXXXXXKNQSPCSKVRLALE 60
             MCPLR +L+F SA LAG+   R +                      K +      R  ++
Sbjct:     1 MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEA------KEKQGLDFKR-KMD 53

Query:    61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
             +G WTFVDMASG+YLWR+L    +RS
Sbjct:    54 NGLWTFVDMASGRYLWRNLKEMRQRS 79

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172384 AT5G18150 "AT5G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/86 (34%), Positives = 45/86 (52%)

Query:     1 MCPLRLILIFLSATLAGFFVIRNLKXXXXXXXXXXXXXXXXXXXXXKNQSPCSKVRLALE 60
             MCP+R +L+F SA LAG+F  + +                       N+     ++  +E
Sbjct:     1 MCPMRFLLVFFSAVLAGYFAWKTVSSSPEFDSPDEL-----------NEKQELNLKKKME 49

Query:    61 SGFWTFVDMASGKYLWRHLGSSSKRS 86
             +GFW FVDMASG+YLWR+L    ++S
Sbjct:    50 NGFWVFVDMASGRYLWRNLKEMREKS 75


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.138   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        66   0.00091  102 3  11 22  0.50    27
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  470 (50 KB)
  Total size of DFA:  84 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.98u 0.14s 6.12t   Elapsed:  00:00:01
  Total cpu time:  5.98u 0.14s 6.12t   Elapsed:  00:00:01
  Start:  Thu May  9 23:15:55 2013   End:  Thu May  9 23:15:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010200 "response to chitin" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023959001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (87 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	86.6

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=86.60  E-value=0.62  Score=34.48  Aligned_cols=22  Identities=36%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCC
Q 034691            6 LILIFLSATLAGFFVIRNLKSP   27 (87)
Q Consensus         6 ~ILIFlSAtLAGffv~r~l~s~   27 (87)
                      .||+.||+++..||++|.+|..
T Consensus        99 ~Vl~g~s~l~i~yfvir~~R~r  120 (163)
T PF06679_consen   99 YVLVGLSALAILYFVIRTFRLR  120 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            5889999999999999999876

Their function is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00