Citrus Sinensis ID: 034713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEccccEEccHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MTDFKFQFCLVLAKVYadgsicldilqnqwspiyDVAAILTSIQSllcdpnpnspansEAARMFSENKREYNRRVREIVEQSWTAD
Flexible Loop (DISEMBL)
MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Low Complexity Region (SEG)
MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Disordered region (IsUnstruct)
***FKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLC**************************************
Disordered Region (DISOPRED)
*TDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW***
Disordered Region (DISEMBL)
MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI********
Disordered Region (DISPRO)
*TDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWT**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
P35130	152	Ubiquitin-conjugating enz	N/A	no	0.953	0.539	0.865	2e-36
P42745	152	Ubiquitin-conjugating enz	yes	no	0.953	0.539	0.853	1e-35
P25866	152	Ubiquitin-conjugating enz	N/A	no	0.953	0.539	0.841	1e-35
P25865	152	Ubiquitin-conjugating enz	yes	no	0.953	0.539	0.829	7e-35
Q553F3	151	Ubiquitin-conjugating enz	yes	no	0.941	0.536	0.802	2e-33
P42746	150	Ubiquitin-conjugating enz	no	no	0.918	0.526	0.784	5e-31
P52478	192	Ubiquitin-conjugating enz	yes	no	0.918	0.411	0.721	1e-27
P63149	152	Ubiquitin-conjugating enz	no	no	0.918	0.519	0.696	7e-27
P63148	152	Ubiquitin-conjugating enz	no	no	0.918	0.519	0.696	7e-27
P63147	152	Ubiquitin-conjugating enz	yes	no	0.918	0.519	0.696	7e-27

>sp|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVRE+VEQSWTAD
Sbjct: 131 SENKREYNRRVREVVEQSWTAD 152

Catalyzes the covalent attachment of ubiquitin to other proteins.
Medicago sativa (taxid: 3879)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/82 (85%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SE+KREYNRRVRE+VEQSWTAD
Sbjct: 131 SESKREYNRRVREVVEQSWTAD 152

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P25866|UBC2_WHEAT Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNR+VRE+VEQSWTAD
Sbjct: 131 SENKREYNRKVREVVEQSWTAD 152

Catalyzes the covalent attachment of ubiquitin to other proteins.

Triticum aestivum (taxid: 4565)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P25865|UBC1_ARATH Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1

 Score =  145 bits (366), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SE+KREYNRRVR++VEQSWTAD
Sbjct: 131 SESKREYNRRVRDVVEQSWTAD 152

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q553F3|UBC2_DICDI Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 73/81 (90%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           KF   +    VYADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+AR+F
Sbjct: 71  KFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLF 130

Query: 65  SENKREYNRRVREIVEQSWTA 85
            ENKREYNR+V+EIVEQSW++
Sbjct: 131 RENKREYNRKVKEIVEQSWSS 151

Catalyzes the covalent attachment of ubiquitin to other proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P42746|UBC3_ARATH Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 71/79 (89%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAAR+F
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLF 130

Query: 65  SENKREYNRRVREIVEQSW 83
           SENKREYNR+V EIVEQS+
Sbjct: 131 SENKREYNRKVIEIVEQSY 149

Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 67/79 (84%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           KF   +    VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++
Sbjct: 71  KFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY 130

Query: 65  SENKREYNRRVREIVEQSW 83
            EN+REY +RV++IVEQSW
Sbjct: 131 QENRREYEKRVQQIVEQSW 149

Catalyzes the covalent attachment of ubiquitin to other proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63149|UBE2B_RAT Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++
Sbjct: 71  RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLY 130

Query: 65  SENKREYNRRVREIVEQSW 83
            ENKREY +RV  IVEQSW
Sbjct: 131 QENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation (By similarity). In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63148|UBE2B_RABIT Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++
Sbjct: 71  RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLY 130

Query: 65  SENKREYNRRVREIVEQSW 83
            ENKREY +RV  IVEQSW
Sbjct: 131 QENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P63147|UBE2B_MOUSE Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++
Sbjct: 71  RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLY 130

Query: 65  SENKREYNRRVREIVEQSW 83
            ENKREY +RV  IVEQSW
Sbjct: 131 QENKREYEKRVSAIVEQSW 149

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In association with the E3 enzyme BRE1 (RNF20 and/or RNF40), it plays a role in transcription regulation by catalyzing the monoubiquitination of histone H2B at 'Lys-120' to form H2BK120ub1. H2BK120ub1 gives a specific tag for epigenetic transcriptional activation, elongation by RNA polymerase II, telomeric silencing, and is also a prerequisite for H3K4me and H3K79me formation. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'- and 'Lys-63'-linked polyubiquitination. Required for postreplication repair of UV-damaged DNA. Associates to the E3 ligase RAD18 to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. May be involved in neurite outgrowth.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
296086416	191	unnamed protein product [Vitis vinifera]	0.953	0.429	0.878	4e-35
406657708	152	ubiquitin-conjugating enzyme E2 2-like p	0.953	0.539	0.878	6e-35
388509818	152	unknown [Lotus japonicus]	0.953	0.539	0.878	6e-35
225452727	152	PREDICTED: ubiquitin-conjugating enzyme	0.953	0.539	0.878	6e-35
352145231	152	ubiqutin-conjugating enzyme 4 [Nelumbo n	0.953	0.539	0.878	7e-35
225456701	152	PREDICTED: ubiquitin-conjugating enzyme	0.953	0.539	0.878	7e-35
76160925	152	unknown [Solanum tuberosum]	0.953	0.539	0.878	7e-35
317159575	152	ubiquitin-conjugating enzyme E2 [Hevea b	0.953	0.539	0.878	7e-35
83283991	152	ubiquitin carrier-like protein [Solanum	0.953	0.539	0.878	8e-35
356516760	152	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.953	0.539	0.878	8e-35

>gi|296086416|emb|CBI32005.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 110 RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 169

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 170 SENKREYNRRVREIVEQSWTAD 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406657708|gb|AFS50012.1| ubiquitin-conjugating enzyme E2 2-like protein [Dendrobium officinale]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Dendrobium officinale

Species: Dendrobium officinale

Genus: Dendrobium

Family: Orchidaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509818|gb|AFK42975.1| unknown [Lotus japonicus]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452727|ref|XP_002282719.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 1 [Vitis vinifera] gi|359488893|ref|XP_003633840.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 2 [Vitis vinifera]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|352145231|gb|AEQ61925.1| ubiqutin-conjugating enzyme 4 [Nelumbo nucifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Nelumbo nucifera

Species: Nelumbo nucifera

Genus: Nelumbo

Family: Nelumbonaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456701|ref|XP_002273916.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 2 [Vitis vinifera] gi|225456703|ref|XP_002273845.1| PREDICTED: ubiquitin-conjugating enzyme E2 2 isoform 1 [Vitis vinifera] gi|297734010|emb|CBI15257.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|76160925|gb|ABA40426.1| unknown [Solanum tuberosum]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317159575|gb|ADV04062.1| ubiquitin-conjugating enzyme E2 [Hevea brasiliensis]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83283991|gb|ABC01903.1| ubiquitin carrier-like protein [Solanum tuberosum] gi|352145207|gb|AEQ61924.1| ubiqutin-conjugating enzyme 3 [Nelumbo nucifera] gi|388512951|gb|AFK44537.1| unknown [Lotus japonicus]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516760|ref|XP_003527061.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 2-like [Glycine max]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 72/82 (87%), Positives = 75/82 (91%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 130

Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SENKREYNRRVREIVEQSWTAD
Sbjct: 131 SENKREYNRRVREIVEQSWTAD 152

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
TAIR|locus:2058806	152	UBC2 "AT2G02760" [Arabidopsis	0.837	0.473	0.958	4.6e-34
TAIR|locus:2012622	152	UBC1 "AT1G14400" [Arabidopsis	0.837	0.473	0.930	2e-33
DICTYBASE|DDB_G0275787	151	rad6 "ubiquitin-conjugating en	0.941	0.536	0.802	1.3e-31
TAIR|locus:2154104	150	UBC3 "AT5G62540" [Arabidopsis	0.802	0.46	0.884	1e-29
WB|WBGene00006701	192	ubc-1 [Caenorhabditis elegans	0.802	0.359	0.797	3.2e-26
UNIPROTKB|P52478	192	ubc-1 "Ubiquitin-conjugating e	0.802	0.359	0.797	3.2e-26
UNIPROTKB|E1BS81	152	LOC100857678 "Uncharacterized	0.802	0.453	0.782	6.6e-26
UNIPROTKB|E1BSI3	162	LOC100857678 "Uncharacterized	0.802	0.425	0.782	6.6e-26
UNIPROTKB|Q9W6F3	152	UBE2A "Uncharacterized protein	0.802	0.453	0.782	6.6e-26
UNIPROTKB|Q32P99	152	UBE2B "Ubiquitin-conjugating e	0.802	0.453	0.782	6.6e-26

TAIR|locus:2058806 UBC2 "AT2G02760" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 69/72 (95%), Positives = 72/72 (100%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE+KREYNRR
Sbjct:    81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRR 140

Query:    75 VREIVEQSWTAD 86
             VRE+VEQSWTAD
Sbjct:   141 VREVVEQSWTAD 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0033523 "histone H2B ubiquitination" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009650 "UV protection" evidence=IGI

TAIR|locus:2012622 UBC1 "AT1G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 67/72 (93%), Positives = 72/72 (100%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+SE+KREYNRR
Sbjct:    81 IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRR 140

Query:    75 VREIVEQSWTAD 86
             VR++VEQSWTAD
Sbjct:   141 VRDVVEQSWTAD 152

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IDA;TAS

GO:0009910 "negative regulation of flower development" evidence=IGI

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0033523 "histone H2B ubiquitination" evidence=IGI

GO:0006301 "postreplication repair" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

DICTYBASE|DDB_G0275787 rad6 "ubiquitin-conjugating enzyme E2" [Dictyostelium discoideum (taxid:44689)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 65/81 (80%), Positives = 73/81 (90%)

Query:     5 KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
             KF   +    VYADGSICLDILQNQWSPIYD+AAILTSIQSLLCDPNPNSPANSE+AR+F
Sbjct:    71 KFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLF 130

Query:    65 SENKREYNRRVREIVEQSWTA 85
              ENKREYNR+V+EIVEQSW++
Sbjct:   131 RENKREYNRKVKEIVEQSWSS 151

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2154104 UBC3 "AT5G62540" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 61/69 (88%), Positives = 68/69 (98%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             +YADGSICLDILQNQWSPIYDVAA+LTSIQSLLCDPNP+SPAN+EAAR+FSENKREYNR+
Sbjct:    81 IYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREYNRK 140

Query:    75 VREIVEQSW 83
             V EIVEQS+
Sbjct:   141 VIEIVEQSY 149

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

WB|WBGene00006701 ubc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/69 (79%), Positives = 64/69 (92%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +R
Sbjct:    81 VYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKR 140

Query:    75 VREIVEQSW 83
             V++IVEQSW
Sbjct:   141 VQQIVEQSW 149

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006281 "DNA repair" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IDA

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

UNIPROTKB|P52478 ubc-1 "Ubiquitin-conjugating enzyme E2 1" [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 55/69 (79%), Positives = 64/69 (92%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +R
Sbjct:    81 VYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKR 140

Query:    75 VREIVEQSW 83
             V++IVEQSW
Sbjct:   141 VQQIVEQSW 149

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|E1BS81 LOC100857678 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/69 (78%), Positives = 63/69 (91%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +R
Sbjct:    81 VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKR 140

Query:    75 VREIVEQSW 83
             V  IVEQSW
Sbjct:   141 VSAIVEQSW 149

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|E1BSI3 LOC100857678 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/69 (78%), Positives = 63/69 (91%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +R
Sbjct:    91 VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKR 150

Query:    75 VREIVEQSW 83
             V  IVEQSW
Sbjct:   151 VSAIVEQSW 159

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005657 "replication fork" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006301 "postreplication repair" evidence=IEA

GO:0006344 "maintenance of chromatin silencing" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0010845 "positive regulation of reciprocal meiotic recombination" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0033128 "negative regulation of histone phosphorylation" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0033522 "histone H2A ubiquitination" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043951 "negative regulation of cAMP-mediated signaling" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0051026 "chiasma assembly" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0070076 "histone lysine demethylation" evidence=IEA

GO:0070193 "synaptonemal complex organization" evidence=IEA

GO:0070534 "protein K63-linked ubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|Q9W6F3 UBE2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/69 (78%), Positives = 63/69 (91%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +R
Sbjct:    81 VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKR 140

Query:    75 VREIVEQSW 83
             V  IVEQSW
Sbjct:   141 VSAIVEQSW 149

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0033522 "histone H2A ubiquitination" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0060135 "maternal process involved in female pregnancy" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

UNIPROTKB|Q32P99 UBE2B "Ubiquitin-conjugating enzyme E2 B" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 54/69 (78%), Positives = 63/69 (91%)

Query:    15 VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
             VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++ ENKREY +R
Sbjct:    81 VYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKR 140

Query:    75 VREIVEQSW 83
             V  IVEQSW
Sbjct:   141 VSAIVEQSW 149

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0033503 "HULC complex" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070979 "protein K11-linked ubiquitination" evidence=ISS

GO:0070534 "protein K63-linked ubiquitination" evidence=ISS

GO:0005886 "plasma membrane" evidence=IEA

GO:0070193 "synaptonemal complex organization" evidence=IEA

GO:0070076 "histone lysine demethylation" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0051026 "chiasma assembly" evidence=IEA

GO:0050821 "protein stabilization" evidence=IEA

GO:0043951 "negative regulation of cAMP-mediated signaling" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0033522 "histone H2A ubiquitination" evidence=IEA

GO:0033128 "negative regulation of histone phosphorylation" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010845 "positive regulation of reciprocal meiotic recombination" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0007288 "sperm axoneme assembly" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006344 "maintenance of chromatin silencing" evidence=IEA

GO:0006301 "postreplication repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005657 "replication fork" evidence=IEA

GO:0001741 "XY body" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52478	UBC1_CAEEL	6, ., 3, ., 2, ., 1, 9	0.7215	0.9186	0.4114	yes	no
Q553F3	UBC2_DICDI	6, ., 3, ., 2, ., 1, 9	0.8024	0.9418	0.5364	yes	no
P42745	UBC2_ARATH	6, ., 3, ., 2, ., 1, 9	0.8536	0.9534	0.5394	yes	no
P25865	UBC1_ARATH	6, ., 3, ., 2, ., 1, 9	0.8292	0.9534	0.5394	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	0.914
3rd Layer	6.3.2	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020897001 RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (152 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	86
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-32
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	8e-30
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-29
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	4e-26
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	3e-17
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	4e-13

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  110 bits (276), Expect = 1e-32
 Identities = 35/69 (50%), Positives = 52/69 (75%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G++CLDIL+++WSP+Y +  IL S+QSLL  PNP+SP N+EAA ++ E+K EY ++
Sbjct: 83  VDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKK 142

Query: 75  VREIVEQSW 83
           VRE V++  
Sbjct: 143 VREWVKKYA 151

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  102 bits (256), Expect = 8e-30
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 15  VYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           V  +G ICL IL+   WSP Y +  +L S+QSLL +PNP+ P N+EAA+++ EN+ E+ +
Sbjct: 76  VDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKK 135

Query: 74  RVREIV 79
           + RE  
Sbjct: 136 KAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  101 bits (253), Expect = 3e-29
 Identities = 32/66 (48%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 15  VYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           V   G ICLDIL+++ WSP   +  +L SIQSLL +PNP  P N+EAA+++ +N+ E+ +
Sbjct: 74  VDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEK 133

Query: 74  RVREIV 79
           +VRE V
Sbjct: 134 KVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 93.1 bits (232), Expect = 4e-26
 Identities = 30/71 (42%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 15  VYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           V + G ICLDIL Q +WSP   +  +L S+QSLL +PNP+SP N++AA ++ +N+ E+ +
Sbjct: 75  VDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSPLNADAAELYKKNREEFKK 134

Query: 74  RVREIVEQSWT 84
           + RE  ++   
Sbjct: 135 KAREWTKKYAE 145

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 70.5 bits (172), Expect = 3e-17
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSICLDIL++QWSP   V+ +L SI SLL DPNP+ P   E AR+F EN+  Y   
Sbjct: 78  INSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRY--- 134

Query: 75  VREIVEQSWT 84
             E   + WT
Sbjct: 135 --EATAREWT 142

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 60.2 bits (146), Expect = 4e-13
 Identities = 24/59 (40%), Positives = 36/59 (61%)

Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
           G ICLDIL+++WSP   +  +L SIQ+LL  P P+ P ++  A  F  N+ +  +  RE
Sbjct: 83  GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVARE 141

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	99.96
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.95
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.95
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	99.95
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.94
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	99.94
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	99.92
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	99.9
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.65
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.59
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	98.01
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	97.57
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	97.45
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	96.92
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	96.59
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	96.24
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	96.1
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	94.65
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	94.61
PF14460	175	Prok-E2_D: Prokaryotic E2 family D	86.09

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.1e-38  Score=196.84  Aligned_cols=85  Identities=33%  Similarity=0.640  Sum_probs=83.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+..|.||+|||+++|+|+++|..||.+|++||.+|++++|++.++|.+|+.|+++|++.||+||+
T Consensus        64 PPkV~F~TkIyHPNI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~  143 (148)
T KOG0417|consen   64 PPKVRFLTKIYHPNIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTR  143 (148)
T ss_pred             CCceEeecccccCCcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      |||++
T Consensus       144 kyA~~  148 (148)
T KOG0417|consen  144 KYAMG  148 (148)
T ss_pred             HHhcC
Confidence            99974

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.5e-36  Score=190.50  Aligned_cols=84  Identities=43%  Similarity=0.793  Sum_probs=82.4

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|+|+|.|+||||||+++|.|||++|+++|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++
T Consensus        69 PPkv~F~t~i~HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~  148 (153)
T COG5078          69 PPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVK  148 (153)
T ss_pred             CCeeeeccCCcCCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +|+.
T Consensus       149 ~~~~  152 (153)
T COG5078         149 KYAE  152 (153)
T ss_pred             Hhcc
Confidence            9986

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=4.6e-34  Score=182.69  Aligned_cols=85  Identities=29%  Similarity=0.550  Sum_probs=83.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+++|.||+++|.++|+|++|+.+||.+|++||.+|++++|+|.+||.+|++|+++|+++||+|++
T Consensus        65 pP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~  144 (152)
T PTZ00390         65 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQ  144 (152)
T ss_pred             CCEEEEecCCeeceECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +|+.+
T Consensus       145 ~~a~~  149 (152)
T PTZ00390        145 KYAKH  149 (152)
T ss_pred             HHhcc
Confidence            99874

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.9e-33  Score=178.94  Aligned_cols=84  Identities=42%  Similarity=0.710  Sum_probs=82.0

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|++|+++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|++
T Consensus        64 pP~v~f~t~i~HPNv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~  143 (147)
T PLN00172         64 PPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQ  143 (147)
T ss_pred             CCEEEEecCcccceECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +|+.
T Consensus       144 ~~a~  147 (147)
T PLN00172        144 RYAT  147 (147)
T ss_pred             HhhC
Confidence            9873

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-33  Score=175.07  Aligned_cols=86  Identities=72%  Similarity=1.087  Sum_probs=83.0

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|.|+|.+++|||||+++|.+|||+|...|+|.|++..||.+||+||++|++++|+|.+||.+|.+|+.+|.+++++.++
T Consensus        67 PP~VrFvs~mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~ve  146 (152)
T KOG0419|consen   67 PPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVE  146 (152)
T ss_pred             CCeeEeeeeccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 034713           81 QSWTAD   86 (86)
Q Consensus        81 ~~~~~~   86 (86)
                      +++..+
T Consensus       147 qsw~~~  152 (152)
T KOG0419|consen  147 QSWSDI  152 (152)
T ss_pred             HhhccC
Confidence            987653

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.6e-31  Score=167.25  Aligned_cols=84  Identities=36%  Similarity=0.644  Sum_probs=81.5

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCC--CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~--W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      .|+++|.+++|||||+++|.|||++|+++  |+|+.||.+||.+||.||..||+.+|+|.||...|..|+.+|+++||.+
T Consensus        72 PPkckF~~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~q  151 (158)
T KOG0424|consen   72 PPKCKFKPPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQ  151 (158)
T ss_pred             CCccccCCCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHH
Confidence            48999999999999999999999999865  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 034713           79 VEQSWT   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      +++|+.
T Consensus       152 ak~~a~  157 (158)
T KOG0424|consen  152 AKEYAK  157 (158)
T ss_pred             HHHhcc
Confidence            999985

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-30  Score=165.49  Aligned_cols=84  Identities=40%  Similarity=0.713  Sum_probs=80.4

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      .|+++|.|+||||||+++|.||.+||.             +.|.|..|+++||++|.+||.+||.++|+|.+||+.|++|
T Consensus        69 PP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren  148 (171)
T KOG0425|consen   69 PPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWREN  148 (171)
T ss_pred             CCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhC
Confidence            499999999999999999999999994             5799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 034713           68 KREYNRRVREIVEQSWT   84 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~~   84 (86)
                      +++|.+++++++.++.+
T Consensus       149 ~~EykkkV~r~vr~s~e  165 (171)
T KOG0425|consen  149 PEEYKKKVRRCVRRSQE  165 (171)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998765

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.2e-30  Score=169.37  Aligned_cols=85  Identities=28%  Similarity=0.534  Sum_probs=82.9

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||++ +|.||||+|++.|++++||+.+|++||++|+.|++.+|.+..+|.+|.+|++-|.+.||.||
T Consensus        69 pPkv~F~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT  148 (200)
T KOG0418|consen   69 PPKVKFITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWT  148 (200)
T ss_pred             CCceeeeeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            59999999999999987 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ..||.+
T Consensus       149 ~~fA~~  154 (200)
T KOG0418|consen  149 TEFAGG  154 (200)
T ss_pred             HHHhCC
Confidence            999875

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.8e-30  Score=165.72  Aligned_cols=83  Identities=28%  Similarity=0.583  Sum_probs=80.0

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|+|+||||||+.+|.|||+||+++|+|+.+|.+|+.+|+.||.+|+++||+|.+||..++.|++.|..+||...+
T Consensus        92 PPKVkCltkV~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~  171 (184)
T KOG0420|consen   92 PPKVKCLTKVYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMS  171 (184)
T ss_pred             CCeeeeeeccccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      .+.
T Consensus       172 gg~  174 (184)
T KOG0420|consen  172 GGC  174 (184)
T ss_pred             cCc
Confidence            654

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.8e-29  Score=155.96  Aligned_cols=85  Identities=20%  Similarity=0.479  Sum_probs=82.2

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      .|+|.|.|+||||||++.|+||+.++. ++|+|++++.+||.+|..++.+|++++|++.++|.+|.+|+..|.++|.++|
T Consensus        65 PP~i~f~tkiYHpNVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~t  144 (153)
T KOG0422|consen   65 PPKIKFKTKIYHPNVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFT  144 (153)
T ss_pred             CCeeeeeeeeccCCCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHH
Confidence            489999999999999999999999986 8899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      +||++.
T Consensus       145 kK~~e~  150 (153)
T KOG0422|consen  145 KKYSEK  150 (153)
T ss_pred             HHhcCc
Confidence            999875

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.95  E-value=4.3e-28  Score=153.37  Aligned_cols=83  Identities=39%  Similarity=0.706  Sum_probs=80.7

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|++|||||+++|.||+++|. ++|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|.++++.|.++|++++
T Consensus        62 pP~v~f~~~i~Hp~i~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~  141 (145)
T smart00212       62 PPKVKFITKIYHPNVDSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWT  141 (145)
T ss_pred             CCEEEEeCCceEeeECCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            599999999999999999999999998 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 034713           80 EQSW   83 (86)
Q Consensus        80 ~~~~   83 (86)
                      +|++
T Consensus       142 ~k~~  145 (145)
T smart00212      142 KKYA  145 (145)
T ss_pred             HHhC
Confidence            9874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.95  E-value=2.5e-28  Score=153.59  Aligned_cols=79  Identities=39%  Similarity=0.770  Sum_probs=71.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccC-CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~-~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+.+|.||+++|.. .|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus        61 pP~v~f~t~i~HPni~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   61 PPKVRFLTPIFHPNIDENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             --EEEESSS-SBTTB-TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             ccccccccccccccccccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            5999999999999999999999999985 599999999999999999999999999999999999999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.4e-29  Score=160.06  Aligned_cols=85  Identities=32%  Similarity=0.665  Sum_probs=81.5

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|.|.|+||||||+. +|.||||.++..|+|.+.+..|+.. |-+||..|++.+|+|.|||.+|++++++|.+++|++
T Consensus        63 SPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY  142 (189)
T KOG0416|consen   63 SPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEY  142 (189)
T ss_pred             CCcccceeeccCCCchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHH
Confidence            59999999999999997 9999999999999999999999985 689999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      ++|||+.
T Consensus       143 ~~kYA~~  149 (189)
T KOG0416|consen  143 IKKYATP  149 (189)
T ss_pred             HHHhcCh
Confidence            9999974

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.94  E-value=2.8e-27  Score=149.05  Aligned_cols=79  Identities=39%  Similarity=0.773  Sum_probs=76.5

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCC-CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~-W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|++|||||+.+|.||+++|..+ |+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++|+
T Consensus        62 pP~v~f~~~i~HpnV~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          62 PPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCeEEEeCCcccCCCCCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            59999999999999999999999999877 99999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-27  Score=149.19  Aligned_cols=80  Identities=41%  Similarity=0.710  Sum_probs=77.0

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|+|+.|||||+-.|.||||||++.|+..++++.||.+||+||.+|+.++|+|..||.++. |+++|++.+.+..+
T Consensus        92 pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~  170 (175)
T KOG0421|consen   92 PPTVKFLTPCFHPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYK  170 (175)
T ss_pred             CCeeEeeccccCCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhh
Confidence            69999999999999999999999999999999999999999999999999999999999999998 99999999988766


Q ss_pred             H
Q 034713           81 Q   81 (86)
Q Consensus        81 ~   81 (86)
                      +
T Consensus       171 ~  171 (175)
T KOG0421|consen  171 E  171 (175)
T ss_pred             c
Confidence            5

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.8e-25  Score=137.94  Aligned_cols=83  Identities=31%  Similarity=0.705  Sum_probs=79.2

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      .|+++|...||||||+++|+||.+||.             +.|+|.++++.||.++.+||.+|+.++++|.+|+.++++|
T Consensus        68 PPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~  147 (165)
T KOG0426|consen   68 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWRED  147 (165)
T ss_pred             CCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHh
Confidence            489999999999999999999999993             6899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 034713           68 KREYNRRVREIVEQSW   83 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~   83 (86)
                      |++|.+.|+..+.|..
T Consensus       148 R~ef~~i~~~lvrKtL  163 (165)
T KOG0426|consen  148 REEFEKIAKRLVRKTL  163 (165)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998863

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-24  Score=139.89  Aligned_cols=84  Identities=35%  Similarity=0.559  Sum_probs=81.4

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|+-.|+|+||||||-.+|+||.+.|..+|+|.+.|+.||..|..||..|++++.+|.+|.++..++.++|.++||-+|+
T Consensus        73 PPKgYFlTKIFHPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~Te  152 (223)
T KOG0423|consen   73 PPKGYFLTKIFHPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTE  152 (223)
T ss_pred             CCcceeeeeeccCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      -++.
T Consensus       153 IHa~  156 (223)
T KOG0423|consen  153 IHAK  156 (223)
T ss_pred             hhcC
Confidence            8775

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=6.4e-16  Score=103.16  Aligned_cols=84  Identities=20%  Similarity=0.370  Sum_probs=76.0

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCc-ccHHHHHHHHHHhhcCCCCCCC--ccHHHHHHHHhCHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPI-YDVAAILTSIQSLLCDPNPNSP--ANSEAARMFSENKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~-~~l~~vl~~i~~ll~~p~~~~p--~n~~aa~~~~~~~~~f~~~~~   76 (86)
                      .|+|.|.+.+|||.|++ +|.+|++.....|+.. .+|++||..||.+|++|+...+  .|+||+.+|++++++|.++|+
T Consensus        83 lPrvvF~q~vfHP~icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvq  162 (258)
T KOG0429|consen   83 LPRVVFEQSVFHPLICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQ  162 (258)
T ss_pred             CCeEEeeccccccccCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHH
Confidence            49999999999999998 8999999887779655 6899999999999999987755  699999999999999999999


Q ss_pred             HHHHHHhh
Q 034713           77 EIVEQSWT   84 (86)
Q Consensus        77 ~~~~~~~~   84 (86)
                      ++++.+.+
T Consensus       163 e~vk~sr~  170 (258)
T KOG0429|consen  163 ECVKASRS  170 (258)
T ss_pred             HHHHHHHH
Confidence            99988654

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.2e-15  Score=93.72  Aligned_cols=59  Identities=31%  Similarity=0.600  Sum_probs=51.7

Q ss_pred             CCeEEEecCC-ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCC-CCCCCccHH
Q 034713            1 MTDFKFQFCL-VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP-NPNSPANSE   59 (86)
Q Consensus         1 ~P~v~F~t~i-~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p-~~~~p~n~~   59 (86)
                      +|.|.|..++ -||+|+.+|.|||++|.++|+|++++.+|+++|.+||++- +-..|.+.+
T Consensus        77 sPqVmF~~~~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~  137 (161)
T KOG0427|consen   77 SPQVMFVGPAPLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTDND  137 (161)
T ss_pred             CCeEEEecCCCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCccc
Confidence            6999999887 8999999999999999999999999999999999999954 444565443

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=5.6e-06  Score=65.60  Aligned_cols=48  Identities=27%  Similarity=0.605  Sum_probs=40.5

Q ss_pred             CeEEEecC--CccccccCCCceeecccc-------CCCCCcccHHHHHHHHHHhhcC
Q 034713            2 TDFKFQFC--LVLAKVYADGSICLDILQ-------NQWSPIYDVAAILTSIQSLLCD   49 (86)
Q Consensus         2 P~v~F~t~--i~HPNV~~~G~vcl~~l~-------~~W~p~~~l~~vl~~i~~ll~~   49 (86)
                      |.+...+.  -++||.|..|+|||++|+       +-|+|+-++.+||.+||.|..+
T Consensus       915 p~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  915 PLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             CceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            55555544  378999999999999996       5699999999999999999874

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00043  Score=46.77  Aligned_cols=45  Identities=22%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CeEEEecCC--ccccccCCCceeecccc---CCCCCcccHHHHHHHHHHhhcCC
Q 034713            2 TDFKFQFCL--VLAKVYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDP   50 (86)
Q Consensus         2 P~v~F~t~i--~HPNV~~~G~vcl~~l~---~~W~p~~~l~~vl~~i~~ll~~p   50 (86)
                      |.|+..|+-  |-+    +-++||++-.   +.|+|.+++..||.+|.++|.+-
T Consensus        69 PaI~MiTPNGRFkt----ntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~  118 (244)
T KOG0894|consen   69 PAITMITPNGRFKT----NTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED  118 (244)
T ss_pred             CeeEEECCCCceec----CceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC
Confidence            555555541  222    4579999875   77999999999999999999853

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.00015  Score=57.87  Aligned_cols=49  Identities=29%  Similarity=0.611  Sum_probs=43.3

Q ss_pred             CCeEEEecC---CccccccCCCceeecccc-------CCCCCc-ccHHHHHHHHHHhhcC
Q 034713            1 MTDFKFQFC---LVLAKVYADGSICLDILQ-------NQWSPI-YDVAAILTSIQSLLCD   49 (86)
Q Consensus         1 ~P~v~F~t~---i~HPNV~~~G~vcl~~l~-------~~W~p~-~~l~~vl~~i~~ll~~   49 (86)
                      .|.+.++|.   -+.||-|.+|+||+++|.       +.|+|. .+|.++|.+||.++.+
T Consensus       345 pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  345 PPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             CceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            478888877   489999999999999984       679999 7999999999999884

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=96.92  E-value=0.0035  Score=39.09  Aligned_cols=39  Identities=33%  Similarity=0.618  Sum_probs=34.9

Q ss_pred             ccccccCCCceee---ccccCCCCCcccHHHHHHHHHHhhcC
Q 034713           11 VLAKVYADGSICL---DILQNQWSPIYDVAAILTSIQSLLCD   49 (86)
Q Consensus        11 ~HPNV~~~G~vcl---~~l~~~W~p~~~l~~vl~~i~~ll~~   49 (86)
                      +=|+|+.+|.+|+   ...-+.|.|.-++.++|..+..+|.+
T Consensus        65 ~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   65 LLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             ccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999   66668899999999999999999883

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0035  Score=38.49  Aligned_cols=68  Identities=22%  Similarity=0.486  Sum_probs=48.6

Q ss_pred             CccccccC-----CCceeecccc-CCCCCcccHHHHHHHHHHhhcCC--CCCCCccHHHHHHHHhC--HHHHHHHHHHH
Q 034713           10 LVLAKVYA-----DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDP--NPNSPANSEAARMFSEN--KREYNRRVREI   78 (86)
Q Consensus        10 i~HPNV~~-----~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p--~~~~p~n~~aa~~~~~~--~~~f~~~~~~~   78 (86)
                      +-+|.++.     +|.||+.+|. +.|+.+++++.++++|...+..-  -...|++.+-. +|...  .+.|++.++..
T Consensus        32 vv~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk-~~s~~qa~~sfksLv~~h  109 (122)
T KOG0897|consen   32 VVKPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK-LYSHSQAQQSFKSLVQIH  109 (122)
T ss_pred             eeeecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcchhhh-HhhHHHHHHHHHHHHHHH
Confidence            45777763     6999999997 67999999999999998888854  45566655544 55432  34555555443

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=96.24  E-value=0.0049  Score=38.06  Aligned_cols=36  Identities=19%  Similarity=0.526  Sum_probs=26.1

Q ss_pred             cccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhc
Q 034713           12 LAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLC   48 (86)
Q Consensus        12 HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~   48 (86)
                      +.+|+.+|.|.+..| ++|.+ ..+|.+++..++..|.
T Consensus        80 ~~~Vd~~G~v~~pyL-~~W~~~~s~L~~lv~~l~~~F~  116 (121)
T PF05743_consen   80 SHHVDSNGRVYLPYL-QNWNPPSSNLVDLVQELQAVFS  116 (121)
T ss_dssp             CCCB-TTSBB-SHHH-HT--TTTS-HHHHHHHHHHCCC
T ss_pred             CCeECCCCCEeCchh-ccCCCCCCCHHHHHHHHHHHHh
Confidence            449999999999998 58977 7789999988888776

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.0076  Score=37.96  Aligned_cols=50  Identities=12%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             CCeEEEecCCccccccC-CCceeecccc--CCCCCcccHHHHHHHHHHhhcCC
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDP   50 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p   50 (86)
                      .|.|+|.|+|.-+-|+. +|.|.-.-+.  .+|+..++++.+|..++.++...
T Consensus        72 PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~  124 (138)
T KOG0896|consen   72 PPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSK  124 (138)
T ss_pred             CceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHHH
Confidence            48999999999999976 7777664332  78999999999999998666543

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.65  E-value=0.046  Score=39.34  Aligned_cols=38  Identities=18%  Similarity=0.492  Sum_probs=32.1

Q ss_pred             cccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhcCC
Q 034713           12 LAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCDP   50 (86)
Q Consensus        12 HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~~p   50 (86)
                      |-+|+.+|.|.|..| .+|.+ +.+|..++..+...|.++
T Consensus       100 ~~hVd~nG~V~LPYL-h~W~~pssdLv~Liq~l~a~f~~~  138 (365)
T KOG2391|consen  100 HEHVDPNGKVYLPYL-HNWDPPSSDLVGLIQELIAAFSED  138 (365)
T ss_pred             hhccCCCCeEechhh-ccCCCccchHHHHHHHHHHHhcCC
Confidence            899999999999999 47855 567889988888888754

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=0.029  Score=38.85  Aligned_cols=31  Identities=23%  Similarity=0.612  Sum_probs=26.6

Q ss_pred             CCceeecccc---CCCCCcccHHHHHHHHHHhhc
Q 034713           18 DGSICLDILQ---NQWSPIYDVAAILTSIQSLLC   48 (86)
Q Consensus        18 ~G~vcl~~l~---~~W~p~~~l~~vl~~i~~ll~   48 (86)
                      +-.|||+|-+   +.|.|+++|+..|.+|..+|-
T Consensus        88 nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP  121 (314)
T KOG0428|consen   88 NKKICLSISGYHPETWQPSWSIRTALLALIGFMP  121 (314)
T ss_pred             CceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence            3469999986   789999999999999988775

>PF14460 Prok-E2_D: Prokaryotic E2 family D

Probab=86.09  E-value=1.5  Score=28.56  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             ecCCcc---ccccCCCceeeccccCCCCCcccHHHHHHHHH-HhhcCC
Q 034713            7 QFCLVL---AKVYADGSICLDILQNQWSPIYDVAAILTSIQ-SLLCDP   50 (86)
Q Consensus         7 ~t~i~H---PNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~-~ll~~p   50 (86)
                      .|++||   +||+.+|.||..-..   .|......-+.... .++.++
T Consensus        89 ~T~Ly~aPf~NV~~~g~vC~G~~~---~P~~~~~~~i~~we~~Ff~S~  133 (175)
T PF14460_consen   89 DTPLYHAPFFNVYSNGSVCWGNNS---LPKISTLASIEAWEDAFFNSP  133 (175)
T ss_pred             CCeeEeCCccccCCCCcEeeCCCc---CCCccCHHHHHHHHHHHhCCC
Confidence            466666   699999999997643   34444344455554 444454

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	86
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		6e-36
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		9e-29
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-28
1jas_A	152	Hsubc2b Length = 152		6e-28
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-24
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-14
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		1e-14
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		1e-14
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		2e-14
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-14
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		2e-14
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		2e-14
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		2e-14
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		2e-14
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		2e-14
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-14
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-14
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		5e-14
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		5e-14
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		5e-14
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		5e-14
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		5e-14
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		8e-14
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		9e-14
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		2e-13
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-13
3jvz_A	146	E2~ubiquitin-Hect Length = 146		2e-13
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-13
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-13
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		6e-13
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		4e-12
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		9e-12
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		9e-12
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-11
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		3e-11
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		6e-11
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		6e-11
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		6e-11
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		1e-10
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		2e-10
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		2e-10
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		2e-10
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		3e-10
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		3e-10
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		3e-10
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		3e-10
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		3e-10
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		3e-10
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		4e-10
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		6e-10
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		8e-10
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-09
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		1e-09
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		2e-09
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-09
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-09
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		3e-09
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		3e-09
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		3e-09
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		3e-09
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		4e-09
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		6e-09
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		9e-09
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		9e-09
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-08
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-08
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-08
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-08
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		2e-08
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-08
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-08
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-08
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		7e-08
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		7e-08
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		7e-08
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		7e-08
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		8e-08
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		9e-08
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		9e-08
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		3e-07
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		4e-07
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		8e-07
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		4e-06
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		7e-06
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		7e-06
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		3e-04

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 75/82 (91%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+
Sbjct: 71  RFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY 130
Query: 65  SENKREYNRRVREIVEQSWTAD 86
           SE+KREYNRRVR++VEQSWTAD
Sbjct: 131 SESKREYNRRVRDVVEQSWTAD 152

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           KF   +    VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++
Sbjct: 74  KFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY 133
Query: 65  SENKREYNRRVREIVEQSW 83
            EN+REY +RV++IVEQSW
Sbjct: 134 QENRREYEKRVQQIVEQSW 152

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  121 bits (303), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 67/79 (84%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           KF   +    VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++
Sbjct: 71  KFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY 130
Query: 65  SENKREYNRRVREIVEQSW 83
            EN+REY +RV++IVEQSW
Sbjct: 131 QENRREYEKRVQQIVEQSW 149

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  119 bits (297), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/79 (69%), Positives = 66/79 (83%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +F   +    VYADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+++
Sbjct: 71  RFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLY 130
Query: 65  SENKREYNRRVREIVEQSW 83
            ENKREY +RV  IVEQSW
Sbjct: 131 QENKREYEKRVSAIVEQSW 149

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/79 (62%), Positives = 61/79 (77%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           KF   +    VYA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA +F
Sbjct: 71  KFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF 130
Query: 65  SENKREYNRRVREIVEQSW 83
            ++K +Y +RV+E VE+SW
Sbjct: 131 KDHKSQYVKRVKETVEKSW 149

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   +    K+Y     ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ 
Sbjct: 76  TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 135
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   + A+++  +K +YNR  RE  ++
Sbjct: 136 PLVPDIAQIYKSDKEKYNRHAREWTQK 162

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   +    K+Y     ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ 
Sbjct: 64  TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   + A+++  +K +YNR  RE  ++
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   +    K+Y     ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   + A+++  +K +YNR  RE  ++
Sbjct: 120 PLVPDIAQIYKSDKEKYNRHAREWTQK 146

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 76  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 136 PLVPEIARIYKTDREKYNRIAREWTQK 162

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    K+Y     ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ 
Sbjct: 63  TDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 122
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   + A ++  +K +YNR  RE  ++
Sbjct: 123 PLVPDIAHIYKSDKEKYNRLAREWTQK 149

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 63  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 122
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 123 PLVPEIARIYKTDREKYNRIAREWTQK 149

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 58  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 118 PLVPEIARIYKTDREKYNRIAREWTQK 144

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 68  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 128 PLVPEIARIYQTDREKYNRIAREWTQK 154

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QW P   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 66  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 125
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 126 PLVPEIARIYKTDRDKYNRISREWTQK 152

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDRDKYNRISREWTQK 146

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 68  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 127
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 128 PLVPEIARIYKTDRDKYNRISREWTQK 154

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR 
Sbjct: 80  INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRI 139
Query: 75  VREIVEQ 81
            RE  ++
Sbjct: 140 AREWTQK 146

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 116
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 117 PLVPEIARIYKTDRDKYNRISREWTQK 143

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 61  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++  YN+  RE  ++
Sbjct: 121 PLVPEIARIYKTDRERYNQLAREWTQK 147

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLD L++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 60  TDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 120 PLVPEIARIYKTDREKYNRIAREWTQK 146

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 61  TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 120
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 121 PLVPEIARIYKTDREKYNRIAREWTQK 147

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   +    K+Y     ++GSI LDIL++QWSP   V+ +L SI SLLCDPNP+ 
Sbjct: 64  TDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPNPDD 123
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   + A+++  +K +YNR  RE  ++
Sbjct: 124 PLVPDIAQIYKSDKEKYNRHAREWTQK 150

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDD 116
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 117 PLVPEIARIYKTDREKYNRIAREWTQK 143

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 58  TDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 118 PLVPEIARIYKTDREKYNRIAREWTQK 144

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 76  TDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDD 135
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 136 PLVPEIARIYKTDREKYNRIAREWTQK 162

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ 
Sbjct: 58  TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E AR++  ++ +YNR  RE  ++
Sbjct: 118 PLVPEIARIYKTDRDKYNRISREWTQK 144

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 4   FKFQFCLVLAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANS 58
           FK      + KVY      +G ICLDIL++QWSP   ++ +L SI SLL DPNP+ P + 
Sbjct: 65  FKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDP 124
Query: 59  EAARMFSENKREYNRRVRE 77
           E A +   NK+++    RE
Sbjct: 125 EVANVLRANKKQFEDTARE 143

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   V    ++Y     ++GSICLDIL++QWSP   ++ +L SI SLL DPNP+ 
Sbjct: 58  TDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNPDD 117
Query: 55  PANSEAARMFSENKREYNRRVRE 77
           P   E A ++  ++  Y    RE
Sbjct: 118 PLVPEIAHVYKTDRSRYELSARE 140

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 6   FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
           F   +    + + G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++ 
Sbjct: 89  FTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYK 148
Query: 66  ENKREYNRRVRE 77
            ++  Y++  RE
Sbjct: 149 SDRMRYDQTARE 160

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           +F   L    VY  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  
Sbjct: 82  RFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYT 141
Query: 63  MFSENKREYNRRVR 76
           MF ++K EY +RVR
Sbjct: 142 MFKKDKVEYEKRVR 155

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 67
           G+ICLD+L+N+WSP   +   L SIQ+LL DP P+ P ++E A+M+ EN
Sbjct: 105 GAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKEN 153

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
           G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+S N+ EY + + E
Sbjct: 90  GNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 147

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF        VY  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R
Sbjct: 78  KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 137
Query: 63  MFSENKREYNRRV 75
            FS NK EY+++V
Sbjct: 138 SFSRNKAEYDKKV 150

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF        VY  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R
Sbjct: 76  KFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWR 135
Query: 63  MFSENKREYNRRV 75
            FS NK EY+++V
Sbjct: 136 SFSRNKAEYDKKV 148

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN  SPA +EA  
Sbjct: 79  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYT 138
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L   +VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 79  KFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN  +PA +EA  
Sbjct: 79  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYT 138
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 2   TDFKFQFCLV--LAKVY-----ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           TD+ F+   +    K+Y     A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ 
Sbjct: 59  TDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDD 118
Query: 55  PANSEAARMFSENKREYNRRVREIVEQ 81
           P   E A ++  ++ +Y    RE  ++
Sbjct: 119 PLVPEIAHIYKTDRPKYEATAREWTKK 145

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
           G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA++  E ++E+   VR
Sbjct: 114 GNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 76  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 136 IYCQNRVEYEKRVR 149

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 79  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 78  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 137
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 138 IYCQNRVEYEKRVR 151

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 77  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 136
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 137 IYCQNRVEYEKRVR 150

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 81  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 140
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 141 IYCQNRVEYEKRVR 154

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 78  KFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 137
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 138 IYCQNRVEYEKRVR 151

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+
Sbjct: 84  GAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 138

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 38/55 (69%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+
Sbjct: 85  GAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 78
           G+I LDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E 
Sbjct: 111 GNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQET 169
Query: 79  VEQSWTA 85
             +  T+
Sbjct: 170 YSKQVTS 176

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G+ICLDIL+++WSP   +   L SIQ++L DP P  P ++E A+M  EN 
Sbjct: 127 GAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENH 176

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 17  ADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRV 75
           A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY +++
Sbjct: 101 ASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKI 160
Query: 76  REIVEQSWTAD 86
           +E +++  T +
Sbjct: 161 KEYIQKYATEE 171

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R
Sbjct: 90  VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAAR 149
Query: 75  VREIVE 80
            R + E
Sbjct: 150 ARLLTE 155

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G ICLDIL+++WSP   +  +L SIQ+LL  P P+ P +S+ A  F +
Sbjct: 70  LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
Query: 67  NKREYNRRVRE 77
           +K +     R+
Sbjct: 130 DKNDAEHVARQ 140

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G ICLDIL+++WSP   +  +L SIQ+LL  P P+ P +S+ A  F +
Sbjct: 70  LTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQ 129
Query: 67  NKREYNRRVRE 77
           +K +     R+
Sbjct: 130 DKNDAEHVARQ 140

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++ L IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 76  KFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 136 IYXQNRVEYEKRVR 149

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 17  ADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRV 75
           A GS+CLD++   W+P+Y +  +    +  LL  PNP+ P NS+AA +  ++K  Y  +V
Sbjct: 79  ASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKV 138
Query: 76  REIVE 80
           +E V+
Sbjct: 139 KEYVK 143

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    V   G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 79  KFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 138
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 139 IYCQNRVEYEKRVR 152

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 5   KFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR 62
           KF+  L    VY  G++ L IL+    W P   +  IL  IQ LL +PN   PA +EA  
Sbjct: 76  KFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYT 135
Query: 63  MFSENKREYNRRVR 76
           ++ +N+ EY +RVR
Sbjct: 136 IYCQNRVEYEKRVR 149

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 18  DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
           +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+ 
Sbjct: 84  EGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143
Query: 78  IVEQSWTA 85
                +  
Sbjct: 144 SXRGGYIG 151

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +
Sbjct: 72  LTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67  NKREYNRRVRE 77
           N++    + RE
Sbjct: 132 NEQGAKAKARE 142

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +
Sbjct: 74  LTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 133
Query: 67  NKREYNRRVRE 77
           N++    + RE
Sbjct: 134 NEQGAKAKARE 144

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 18  DGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
           +G++C+ IL +             +W P++ V  IL S+ S+L DPN  SPAN +AA+M 
Sbjct: 84  EGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQ 143
Query: 65  SENKREYNRRVREIVEQS 82
            EN  E+ ++V + V +S
Sbjct: 144 RENYAEFKKKVAQCVRRS 161

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A+
Sbjct: 84  IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 143
Query: 62  RMFSENKREYNRRVREIVEQS 82
           +M+ +++ ++ +  ++IV++S
Sbjct: 144 KMWRDDREQFYKIAKQIVQKS 164

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A+
Sbjct: 85  IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 144
Query: 62  RMFSENKREYNRRVREIVEQS 82
           +M+ +++ ++ +  ++IV++S
Sbjct: 145 KMWRDDREQFYKIAKQIVQKS 165

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A+
Sbjct: 87  IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 146
Query: 62  RMFSENKREYNRRVREIVEQS 82
           +M+ +++ ++ +  ++IV++S
Sbjct: 147 KMWRDDREQFYKIAKQIVQKS 167

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)
Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A+
Sbjct: 81  IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 140
Query: 62  RMFSENKREYNRRVREIVEQS 82
           +M+ +++ ++ +  ++IV++S
Sbjct: 141 KMWRDDREQFYKIAKQIVQKS 161

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 6   FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
           F+  +    + + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  + 
Sbjct: 116 FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 175
Query: 66  ENKREYNRRVRE 77
            N+ E++R  R+
Sbjct: 176 TNRAEHDRMARQ 187

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 18  DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
           +G++ L+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+ 
Sbjct: 104 EGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 163
Query: 78  IVEQSWTA 85
            +   +  
Sbjct: 164 SMRGGYIG 171

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 6   FQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
           F+  +    + + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  + 
Sbjct: 71  FRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYM 130
Query: 66  ENKREYNRRVRE 77
            N+ E++R  R+
Sbjct: 131 TNRAEHDRMARQ 142

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct: 82  GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 131

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct: 84  GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 133

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct: 87  GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 136

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct: 86  GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 135

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 19  GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK 68
           G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+
Sbjct: 89  GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNE 138

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G I LD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +
Sbjct: 72  LTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67  NKREYNRRVRE 77
           N++    + RE
Sbjct: 132 NEQGAKAKARE 142

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 12  LAKVYAD-----GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 66
           L K+Y       G I LD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +
Sbjct: 72  LTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIK 131
Query: 67  NKREYNRRVRE 77
           N++    + RE
Sbjct: 132 NEQGAKAKARE 142

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 4   FKFQFCLVLAKVYADGSICLDILQ----NQWSPIYDVAAILTSIQSLLCDPNPNSPANSE 59
            +F   +    + + G ICLD+L+      W P  ++A +LTSIQ L+ +PNP+ P  ++
Sbjct: 70  IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129
Query: 60  AARMFSENKREYNRRVREIVEQ 81
            +  F  NK  + +  R+  E+
Sbjct: 130 ISSEFKYNKPAFLKNARQWTEK 151

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 4   FKFQFCLVLAKVYADGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDP 50
             F   ++   +Y +G +C+ IL +             +WSP+  V  IL S+ S+L +P
Sbjct: 71  LTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEP 130
Query: 51  NPNSPANSEAARMFSENKREYNRRVR 76
           N  S AN +A  ++ +N+ E+ R+V+
Sbjct: 131 NIESGANIDACILWRDNRPEFERQVK 156

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 4   FKFQFCLVLAKVYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDP 50
            KF   +    V  +G +C+ IL             + +W PI+ V  I+ S+ S+L DP
Sbjct: 84  MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 143
Query: 51  NPNSPANSEAARMFSENKR-EYNRRV 75
           N +SPAN +AA+ + E++  E+ R+V
Sbjct: 144 NGDSPANVDAAKEWREDRNGEFKRKV 169

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 2   TDFKFQ-----FCLVLAKVYAD---GSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNP 52
           +D+ F+     FC  +     D   GS+CLD++   W+P+Y +  I    +  LL  PNP
Sbjct: 65  SDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNP 124
Query: 53  NSPANSEAARMFSENKREYNRRVREIVEQSWT 84
           + P N +AA +   ++  ++  +RE V    T
Sbjct: 125 SDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 4   FKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDP 50
           F+F   +    +Y  G +C+ IL               +W+P  +V  IL S+ SLL +P
Sbjct: 74  FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 133
Query: 51  NPNSPANSEAARMFSENK------REYNRRVREIV 79
           N  SPAN +A+ M+ + K      REY   +R+ V
Sbjct: 134 NTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 4   FKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDP 50
           F+F   +    +Y  G +C+ IL               +W+P  +V  IL S+ SLL +P
Sbjct: 71  FRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEP 130
Query: 51  NPNSPANSEAARMFSENK------REYNRRVREIV 79
           N  SPAN +A+ M+ + K      REY   +R+ V
Sbjct: 131 NTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 19  GSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
           G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct: 105 GQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-44
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-41
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	1e-36
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	3e-36
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	8e-36
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	1e-35
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-35
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-35
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	4e-35
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	5e-35
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-34
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-34
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	4e-34
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-34
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	4e-34
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	8e-34
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-33
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-33
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	2e-33
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	4e-33
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	5e-33
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	1e-32
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-32
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-32
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	5e-32
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	6e-32
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	7e-32
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	1e-31
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-31
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	4e-31
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	5e-31
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	6e-31
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	2e-30
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	3e-30
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	3e-30
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	4e-30
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	2e-29
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	9e-29
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	8e-28
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	7e-26
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	8e-23
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	9e-23
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	5e-22
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-21
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-20
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	3e-20
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	5e-20
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	4e-19
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	4e-17
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-16

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  138 bits (351), Expect = 3e-44
 Identities = 67/72 (93%), Positives = 72/72 (100%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM+SE+KREYNRR
Sbjct: 81  IYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRR 140

Query: 75  VREIVEQSWTAD 86
           VR++VEQSWTAD
Sbjct: 141 VRDVVEQSWTAD 152

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  131 bits (331), Expect = 4e-41
 Identities = 47/70 (67%), Positives = 58/70 (82%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           VYA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +R
Sbjct: 81  VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKR 140

Query: 75  VREIVEQSWT 84
           V+E VE+SW 
Sbjct: 141 VKETVEKSWE 150

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  119 bits (301), Expect = 1e-36
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+  N+ EY + 
Sbjct: 86  VDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKV 144

Query: 75  VREIVEQSWT 84
           + E  + + +
Sbjct: 145 LHEKYKTAQS 154

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  118 bits (299), Expect = 3e-36
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 15  VYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 72
           VY  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  MF ++K EY 
Sbjct: 92  VYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYE 151

Query: 73  RRVREIVEQS 82
           +RVR    ++
Sbjct: 152 KRVRAQAREN 161

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  117 bits (296), Expect = 8e-36
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 15  VYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 72
           VY  G++CL IL+    W P   +  IL  IQ LL +PN  SPA +EA  ++ +N+ EY 
Sbjct: 89  VYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYE 148

Query: 73  RRVREIVEQ 81
           +RVR   ++
Sbjct: 149 KRVRAQAKK 157

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  117 bits (295), Expect = 1e-35
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 15  VYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 72
           VY  G+ICL IL     W P   +  I+  +Q LL  PNPNSPA   A R FS NK EY+
Sbjct: 86  VYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYD 145

Query: 73  RRVREIVEQ 81
           ++V    +Q
Sbjct: 146 KKVLLQAKQ 154

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  117 bits (295), Expect = 2e-35
 Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G+I LDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + 
Sbjct: 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKY 165

Query: 75  VREIVEQSWTAD 86
           ++E   +  T+ 
Sbjct: 166 LQETYSKQVTSQ 177

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  115 bits (291), Expect = 4e-35
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+ 
Sbjct: 81  INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQL 140

Query: 75  VREIVEQ 81
            RE  ++
Sbjct: 141 AREWTQK 147

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  115 bits (291), Expect = 4e-35
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR 
Sbjct: 96  INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRI 155

Query: 75  VREIVEQ 81
            RE  ++
Sbjct: 156 AREWTQK 162

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  115 bits (291), Expect = 5e-35
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R
Sbjct: 90  VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAAR 149

Query: 75  VREIVEQ 81
            R + E 
Sbjct: 150 ARLLTEI 156

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  114 bits (288), Expect = 1e-34
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + 
Sbjct: 81  IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQN 140

Query: 75  VREIVEQSW 83
           V+  +   +
Sbjct: 141 VQRSMRGGY 149

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  114 bits (287), Expect = 2e-34
 Identities = 27/67 (40%), Positives = 44/67 (65%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + + G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++  Y++ 
Sbjct: 98  INSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQT 157

Query: 75  VREIVEQ 81
            RE  ++
Sbjct: 158 AREWSQK 164

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  113 bits (284), Expect = 4e-34
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +   G ICLDIL+++WSP   +  +L SIQ+LL  P P+ P +S+ A  F ++K +    
Sbjct: 78  IDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHV 137

Query: 75  VREIVEQSWT 84
            R+     W 
Sbjct: 138 ARQ-----WN 142

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  114 bits (286), Expect = 4e-34
 Identities = 20/69 (28%), Positives = 39/69 (56%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +  +G++ L+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + 
Sbjct: 101 IDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQN 160

Query: 75  VREIVEQSW 83
           V+  +   +
Sbjct: 161 VQRSMRGGY 169

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  113 bits (285), Expect = 4e-34
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 13/81 (16%)

Query: 15  VYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A 
Sbjct: 82  IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDAC 141

Query: 62  RMFSENKREYNRRVREIVEQS 82
            ++ +N+ E+ R+V+  + +S
Sbjct: 142 ILWRDNRPEFERQVKLSILKS 162

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  112 bits (282), Expect = 8e-34
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +   G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +N++    +
Sbjct: 82  IDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAK 141

Query: 75  VREIVEQSWT 84
            RE     WT
Sbjct: 142 ARE-----WT 146

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  111 bits (281), Expect = 1e-33
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +    
Sbjct: 82  VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET 141

Query: 75  VREIVEQSWT 84
            R      WT
Sbjct: 142 ARA-----WT 146

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  112 bits (283), Expect = 2e-33
 Identities = 24/69 (34%), Positives = 41/69 (59%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +   G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA++  E ++E+   
Sbjct: 110 IDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEA 169

Query: 75  VREIVEQSW 83
           VR  +    
Sbjct: 170 VRLTMSGGS 178

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  111 bits (280), Expect = 2e-33
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 13/81 (16%)

Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A+
Sbjct: 81  IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 140

Query: 62  RMFSENKREYNRRVREIVEQS 82
           +M+ +++ ++ +  ++IV++S
Sbjct: 141 KMWRDDREQFYKIAKQIVQKS 161

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  111 bits (280), Expect = 4e-33
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R 
Sbjct: 125 INSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRM 184

Query: 75  VREIVEQSWT 84
            R+     WT
Sbjct: 185 ARQ-----WT 189

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  110 bits (278), Expect = 5e-33
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 15  VYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREY 71
           V    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y
Sbjct: 100 VDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLY 159

Query: 72  NRRVREIV 79
              +R   
Sbjct: 160 RTILRLFN 167

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  110 bits (277), Expect = 1e-32
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 16  YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
            A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++
Sbjct: 100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQK 159

Query: 75  VREIVEQSWTAD 86
           ++E +++  T +
Sbjct: 160 IKEYIQKYATEE 171

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  109 bits (274), Expect = 2e-32
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 15  VYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           V  +G ICL I+ ++ W P      +L ++  L+  PN   P   + A + ++N   + +
Sbjct: 81  VDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 140

Query: 74  RVREIVEQSW 83
              E   +  
Sbjct: 141 NAEEFTLRFG 150

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  108 bits (273), Expect = 2e-32
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 17  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
             G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct: 91  VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 150

Query: 77  EIVEQSWT 84
                 W 
Sbjct: 151 L-----WA 153

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  107 bits (270), Expect = 5e-32
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 15  VYADGSICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           +   G +CL ++    W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +
Sbjct: 79  IDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK 138

Query: 74  RVREIVEQSW 83
              E  ++  
Sbjct: 139 NAEEFTKKYG 148

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  107 bits (270), Expect = 6e-32
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 16  YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
            A GS+CLD++   W+P+Y +  +    +  LL  PNP+ P NS+AA +  ++K  Y  +
Sbjct: 78  EASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEK 137

Query: 75  VREIVEQSWTAD 86
           V+E V+   + D
Sbjct: 138 VKEYVKLYASKD 149

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  107 bits (270), Expect = 7e-32
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 15  VYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 70
           + + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  
Sbjct: 81  IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPA 140

Query: 71  YNRRVREIVEQSWTA 85
           + +  R+  E+    
Sbjct: 141 FLKNARQWTEKHARQ 155

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  106 bits (268), Expect = 1e-31
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 17  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
             G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+   
Sbjct: 82  VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAA 141

Query: 77  EIVEQSWT 84
                 WT
Sbjct: 142 L-----WT 144

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  107 bits (269), Expect = 1e-31
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 19/88 (21%)

Query: 15  VYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y  G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+
Sbjct: 85  IYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDAS 144

Query: 62  RMFSENK------REYNRRVREIVEQSW 83
            M+ + K      REY   +R+ V  + 
Sbjct: 145 VMYRKWKESKGKDREYTDIIRKQVLGTK 172

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  106 bits (267), Expect = 4e-31
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 5/67 (7%)

Query: 18  DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
            G+ICLDIL+++WSP   +   L SIQ++L DP P  P ++E A+M  EN   + +  + 
Sbjct: 126 TGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKL 185

Query: 78  IVEQSWT 84
                WT
Sbjct: 186 -----WT 187

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  105 bits (264), Expect = 5e-31
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLL---CDPNPNSPANSEAARMFSENKREY 71
           V  +G IC  ++ + W+P    + ++  +   +        +   N EA     +  +++
Sbjct: 99  VTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDF 158

Query: 72  NRRVR 76
             RVR
Sbjct: 159 AARVR 163

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  106 bits (267), Expect = 6e-31
 Identities = 26/69 (37%), Positives = 40/69 (57%)

Query: 18  DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
            G+ICLD+L+N+WSP   +   L SIQ+LL DP P+ P ++E A+M+ EN   + +    
Sbjct: 104 TGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASV 163

Query: 78  IVEQSWTAD 86
             +   T  
Sbjct: 164 WTKTFATGP 172

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  105 bits (263), Expect = 2e-30
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 17  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
             G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct: 88  VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 147

Query: 77  EIVEQSWT 84
                 W 
Sbjct: 148 L-----WA 150

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  103 bits (260), Expect = 3e-30
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 16  YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
              GS+CLD++   W+P+Y +  I    +  LL  PNP+ P N +AA +   ++  ++  
Sbjct: 87  ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDAL 146

Query: 75  VREIVEQSWTAD 86
           +RE V    T  
Sbjct: 147 LREHVSTHATPQ 158

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  105 bits (263), Expect = 3e-30
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 17  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
             G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+   
Sbjct: 83  VTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAA 142

Query: 77  EIVEQSWT 84
                 WT
Sbjct: 143 L-----WT 145

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  103 bits (259), Expect = 4e-30
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 16  YADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF-SENKREYNR 73
            A G ICL+IL+  +W+P++D+   + ++  LL +P  +SP + +   +    +   Y  
Sbjct: 98  SATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQG 157

Query: 74  RVREIVEQSWTAD 86
            V+  + +    +
Sbjct: 158 IVKYFLAERERIN 170

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  104 bits (260), Expect = 2e-29
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 17  ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 76
             G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct: 140 VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 199

Query: 77  EIVEQSWT 84
                 W 
Sbjct: 200 L-----WA 202

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  100 bits (250), Expect = 9e-29
 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 14/76 (18%)

Query: 15  VYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           V  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA
Sbjct: 95  VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAA 154

Query: 62  RMFSENKR-EYNRRVR 76
           + + E++  E+ R+V 
Sbjct: 155 KEWREDRNGEFKRKVA 170

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 97.8 bits (244), Expect = 8e-28
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 15  VYADGSICLDILQNQ------WSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSEN 67
           +   G ICL +L+        W+P   +  ++  + SL  D  N + P N EAA     +
Sbjct: 91  ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRD 150

Query: 68  KREYNRRVREIVEQ 81
           K ++  +V + +++
Sbjct: 151 KEDFRNKVDDYIKR 164

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 96.9 bits (241), Expect = 7e-26
 Identities = 31/69 (44%), Positives = 47/69 (68%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSI LDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR 
Sbjct: 80  INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRI 139

Query: 75  VREIVEQSW 83
            RE  ++  
Sbjct: 140 AREWTQKYA 148

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 83.4 bits (207), Expect = 8e-23
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS 54
           VY++G ICL +L + ++P   ++ ++ SI S+L       
Sbjct: 84  VYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 85.4 bits (211), Expect = 9e-23
 Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 15  VYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAAR-MFSENKREYN 72
           V   G++C+++L  Q WS  Y + +++  I + L          +   +   +  ++ YN
Sbjct: 120 VLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYN 179

Query: 73  RRVR 76
             V+
Sbjct: 180 SIVQ 183

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 82.0 bits (203), Expect = 5e-22
 Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 1/48 (2%)

Query: 18  DGSICLDILQN-QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
            G +  D      W   Y +  +L  ++  +  P        +    F
Sbjct: 91  TGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 80.4 bits (199), Expect = 2e-21
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP 52
           VY++G ICL +L + ++P   ++ ++ SI S+L     
Sbjct: 98  VYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 78.2 bits (193), Expect = 3e-20
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 15  VYADGSI----CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
           V +   +     + +L   W   Y +  +L  ++ L+              + +S
Sbjct: 106 VNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 159

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 78.7 bits (194), Expect = 3e-20
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 15  VYADGSICLDILQ---NQWSPIYDVAAILTSIQSLLCDPNPN--SPANSEAARM-FSENK 68
              +  +CL I     + W+P + V+ ILT + S + +  P   S   S+  +   +   
Sbjct: 89  FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQS 148

Query: 69  REYNRRVREIVEQSW 83
             +N + +   E   
Sbjct: 149 LAFNLKDKVFCELFP 163

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 77.4 bits (191), Expect = 5e-20
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 15  VYADGSIC---LDILQNQWSPIYDVAAILTSI-QSLLCDPNPNSPANSEAARMFSEN 67
           V   G +    L IL+N W+  Y +  IL S+ Q +L   N   P  +E   ++S N
Sbjct: 102 VDNCGRVIKNNLHILKN-WNRNYTIETILISLRQEMLSSANKRLPQPNE-GEVYSNN 156

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 75.2 bits (185), Expect = 4e-19
 Identities = 7/55 (12%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 15  VYADGSI----CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS 65
           V +   +     + +L   W   Y +  +L  ++ L+              + +S
Sbjct: 116 VNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 169

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 69.3 bits (170), Expect = 4e-17
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
           VY++G ICL IL   WSP   V ++  SI S+L
Sbjct: 103 VYSNGHICLSILTEDWSPALSVQSVCLSIISML 135

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 70.5 bits (172), Expect = 2e-16
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 15  VYADGSICLDIL-------QNQWSP-IYDVAAILTSIQSLLCDPNP--NSPA--NSEAAR 62
           +Y DG +CL IL       + +W+P       +L S+QSL+    P  N P    S    
Sbjct: 162 LYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTP 221

Query: 63  MFSENKREYNRRVREIVEQ 81
             +++ REY+  +R+   +
Sbjct: 222 SGTQSSREYDGNIRQATVK 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.98
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	99.98
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	99.98
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.97
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.97
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.97
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.97
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	99.97
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	99.97
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.97
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	99.97
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	99.96
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.95
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.93
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.9
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.88
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.87
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.87
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.85
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.84
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.83
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.8
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.71
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.46
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.25
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	98.86
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	98.38
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	93.35

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=7.2e-35  Score=185.15  Aligned_cols=86  Identities=79%  Similarity=1.231  Sum_probs=82.8

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++
T Consensus        67 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~  146 (152)
T 2aak_A           67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVE  146 (152)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCcccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 034713           81 QSWTAD   86 (86)
Q Consensus        81 ~~~~~~   86 (86)
                      +||++|
T Consensus       147 ~~a~~~  152 (152)
T 2aak_A          147 QSWTAD  152 (152)
T ss_dssp             HHCC--
T ss_pred             HHcccC
Confidence            999987

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=1.3e-34  Score=183.78  Aligned_cols=84  Identities=35%  Similarity=0.621  Sum_probs=82.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||+
T Consensus        67 pP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~  146 (151)
T 4gpr_A           67 APRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR  146 (151)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cceeEEecCcccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +||+
T Consensus       147 ~ya~  150 (151)
T 4gpr_A          147 MYAR  150 (151)
T ss_dssp             HHCC
T ss_pred             HhcC
Confidence            9986

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=1.8e-34  Score=182.86  Aligned_cols=85  Identities=29%  Similarity=0.538  Sum_probs=83.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        64 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~  143 (149)
T 2r0j_A           64 PPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNK  143 (149)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCeeEeccCCccCCCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +||+.
T Consensus       144 ~~a~~  148 (149)
T 2r0j_A          144 IYANN  148 (149)
T ss_dssp             HHSCC
T ss_pred             HHccC
Confidence            99975

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.9e-35  Score=185.18  Aligned_cols=85  Identities=29%  Similarity=0.507  Sum_probs=81.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        68 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~  147 (154)
T 2c2v_B           68 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR  147 (154)
T ss_dssp             CCEEEECSCCCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEeecCcccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +||++
T Consensus       148 ~~a~~  152 (154)
T 2c2v_B          148 LYAMN  152 (154)
T ss_dssp             HHSSC
T ss_pred             HhcCC
Confidence            99975

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-34  Score=185.16  Aligned_cols=84  Identities=58%  Similarity=0.975  Sum_probs=82.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.|||++|+++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        67 PP~v~F~t~i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~  146 (169)
T 1ayz_A           67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVE  146 (169)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCccccccCCccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +|++
T Consensus       147 ~~a~  150 (169)
T 1ayz_A          147 KSWE  150 (169)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            9997

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=4.2e-34  Score=181.26  Aligned_cols=84  Identities=38%  Similarity=0.713  Sum_probs=82.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        67 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~  146 (150)
T 1z2u_A           67 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ  146 (150)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEEecCcccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +||+
T Consensus       147 ~~a~  150 (150)
T 1z2u_A          147 KYAM  150 (150)
T ss_dssp             HHCC
T ss_pred             HHhC
Confidence            9984

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-34  Score=183.99  Aligned_cols=83  Identities=34%  Similarity=0.659  Sum_probs=81.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        84 PP~V~F~T~i~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~  163 (166)
T 2ayv_A           84 PPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQ  163 (166)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceeeeccCCcCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      +||
T Consensus       164 ~~A  166 (166)
T 2ayv_A          164 KYA  166 (166)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            986

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=5.8e-34  Score=183.26  Aligned_cols=84  Identities=39%  Similarity=0.728  Sum_probs=82.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|+++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        82 PP~v~F~T~i~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~  161 (165)
T 2c4o_A           82 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ  161 (165)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCcCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +||+
T Consensus       162 ~~a~  165 (165)
T 2c4o_A          162 KYAM  165 (165)
T ss_dssp             HTTC
T ss_pred             HHhC
Confidence            9984

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.6e-34  Score=183.14  Aligned_cols=86  Identities=29%  Similarity=0.525  Sum_probs=83.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        68 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~  147 (155)
T 1jat_A           68 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK  147 (155)
T ss_dssp             CCEEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCcceeecccccCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 034713           81 QSWTAD   86 (86)
Q Consensus        81 ~~~~~~   86 (86)
                      +||+++
T Consensus       148 ~~a~~~  153 (155)
T 1jat_A          148 LYAKKK  153 (155)
T ss_dssp             HHSEEC
T ss_pred             HhcccC
Confidence            999753

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=5.7e-34  Score=181.48  Aligned_cols=86  Identities=21%  Similarity=0.407  Sum_probs=83.5

Q ss_pred             CCeEEEecCCccccccCCCceeeccc-cCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l-~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+.+|.||+++| .++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||
T Consensus        67 PP~v~f~t~i~HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~  146 (155)
T 1wzv_A           67 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT  146 (155)
T ss_dssp             CCEEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcceeeCCCccCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcC
Q 034713           80 EQSWTAD   86 (86)
Q Consensus        80 ~~~~~~~   86 (86)
                      ++||+++
T Consensus       147 ~~~a~~~  153 (155)
T 1wzv_A          147 LRFGVDR  153 (155)
T ss_dssp             HHHCEEC
T ss_pred             HHhcccC
Confidence            9999764

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2.6e-34  Score=182.09  Aligned_cols=84  Identities=29%  Similarity=0.577  Sum_probs=82.1

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||
T Consensus        65 PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~  144 (149)
T 1fxt_A           65 PPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWT  144 (149)
T ss_dssp             CCEEEESSCCCBTTBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHH
T ss_pred             CCEEEEeCCCccCCCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999998 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 034713           80 EQSWT   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      ++||+
T Consensus       145 ~~~a~  149 (149)
T 1fxt_A          145 RLYAS  149 (149)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99984

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.1e-33  Score=180.83  Aligned_cols=85  Identities=25%  Similarity=0.476  Sum_probs=82.4

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||
T Consensus        74 PP~v~f~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~  153 (159)
T 2bep_A           74 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  153 (159)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999995 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||++
T Consensus       154 ~~~a~~  159 (159)
T 2bep_A          154 HVYAGA  159 (159)
T ss_dssp             HHHSCC
T ss_pred             HHhhcC
Confidence            999864

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.4e-33  Score=180.98  Aligned_cols=84  Identities=31%  Similarity=0.692  Sum_probs=81.9

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      +|+|+|.|+||||||+.+|.||+++|.             ++|+|++||++||.+|++||.+|++++|+|.+||.+|++|
T Consensus        67 PP~v~f~t~i~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~  146 (164)
T 3h8k_A           67 PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDD  146 (164)
T ss_dssp             CCEEEECSCCCCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHC
T ss_pred             CCEEEEcCCCccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHC
Confidence            599999999999999999999999997             7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 034713           68 KREYNRRVREIVEQSWT   84 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~~   84 (86)
                      +++|.++||+|++++++
T Consensus       147 ~~~f~~~~~~~~~~s~~  163 (164)
T 3h8k_A          147 REQFYKIAKQIVQKSLG  163 (164)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999999986

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.4e-33  Score=181.98  Aligned_cols=85  Identities=29%  Similarity=0.577  Sum_probs=82.9

Q ss_pred             CCeEEEecCCccccccCCCceeecccc----CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ----NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~----~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~   76 (86)
                      +|+|+|.|+||||||+.+|.|||++|+    ++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||
T Consensus        67 PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r  146 (169)
T 1yh2_A           67 PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNAR  146 (169)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHH
T ss_pred             CcEEEeecCCccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHH
Confidence            599999999999999999999999998    8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 034713           77 EIVEQSWTA   85 (86)
Q Consensus        77 ~~~~~~~~~   85 (86)
                      +||++||+.
T Consensus       147 ~~~~~~a~~  155 (169)
T 1yh2_A          147 QWTEKHARQ  155 (169)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHccc
Confidence            999999974

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-34  Score=182.49  Aligned_cols=83  Identities=33%  Similarity=0.527  Sum_probs=81.5

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||+
T Consensus        76 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~  155 (158)
T 1zdn_A           76 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE  155 (158)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCEEEeccCcccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      +||
T Consensus       156 ~~A  158 (158)
T 1zdn_A          156 IHG  158 (158)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            986

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-33  Score=179.44  Aligned_cols=84  Identities=39%  Similarity=0.610  Sum_probs=82.0

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+| +|+++|.++||+||+
T Consensus        72 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~  150 (156)
T 2e2c_A           72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK  150 (156)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCcccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999999999999999999999999999 899999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +|+++
T Consensus       151 ~~~~~  155 (156)
T 2e2c_A          151 TAQSD  155 (156)
T ss_dssp             HHHHC
T ss_pred             HhccC
Confidence            99875

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.1e-33  Score=184.57  Aligned_cols=85  Identities=32%  Similarity=0.550  Sum_probs=81.9

Q ss_pred             CCeEEEecCCcccccc-CCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~-~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+ .+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||
T Consensus       108 PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t  187 (193)
T 2f4z_A          108 PPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWT  187 (193)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            5999999999999999 599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||++
T Consensus       188 ~~ya~~  193 (193)
T 2f4z_A          188 ETFAKE  193 (193)
T ss_dssp             HHHCC-
T ss_pred             HHHccC
Confidence            999864

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=2.5e-33  Score=184.92  Aligned_cols=85  Identities=25%  Similarity=0.476  Sum_probs=82.6

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||
T Consensus        71 pP~v~f~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~  150 (201)
T 3k9o_A           71 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  150 (201)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCccccccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999995 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||+.
T Consensus       151 ~~~a~~  156 (201)
T 3k9o_A          151 HVYAGA  156 (201)
T ss_dssp             HHHHCC
T ss_pred             HHhccc
Confidence            999974

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-33  Score=180.91  Aligned_cols=84  Identities=31%  Similarity=0.640  Sum_probs=81.7

Q ss_pred             CCeEEEecCCccccccCCCceeeccc-------------cCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l-------------~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      +|+|+|.|+||||||+.+|.||+++|             .++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|
T Consensus        68 PP~v~f~t~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~  147 (165)
T 2ucz_A           68 PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDN  147 (165)
T ss_dssp             CCEEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTT
T ss_pred             CCEEEEeCCCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHC
Confidence            59999999999999999999999999             67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 034713           68 KREYNRRVREIVEQSWT   84 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~~   84 (86)
                      +++|.++||+|+++|++
T Consensus       148 ~~~y~~~v~~~~~~~~~  164 (165)
T 2ucz_A          148 RPEFERQVKLSILKSLG  164 (165)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999999976

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=2.3e-33  Score=186.86  Aligned_cols=85  Identities=28%  Similarity=0.570  Sum_probs=83.0

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.|||++|.++|+|++||.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||
T Consensus        66 PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t  145 (215)
T 1tte_A           66 PPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWT  145 (215)
T ss_dssp             CCEEEETTTCCCSSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcccccCCCccCcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||..
T Consensus       146 ~~yA~~  151 (215)
T 1tte_A          146 RLYASE  151 (215)
T ss_dssp             HHSSCC
T ss_pred             HHhccC
Confidence            999974

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.2e-33  Score=179.29  Aligned_cols=84  Identities=23%  Similarity=0.420  Sum_probs=81.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccC------CCCCcccHHHHHHHHHHhhcC-CCCCCCccHHHHHHHHhCHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQN------QWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARMFSENKREYNR   73 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~------~W~p~~~l~~vl~~i~~ll~~-p~~~~p~n~~aa~~~~~~~~~f~~   73 (86)
                      +|+|+|.|+||||||+.+|.||+++|..      +|+|+++|.+||.+|++||.+ |++++|+|.+||.+|++|+++|.+
T Consensus        77 pP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~  156 (167)
T 3fn1_B           77 PPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRN  156 (167)
T ss_dssp             CCEEEECSCCCCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHH
T ss_pred             CCeeEecCCcccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHH
Confidence            5999999999999999999999999975      799999999999999999999 699999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 034713           74 RVREIVEQSWT   84 (86)
Q Consensus        74 ~~~~~~~~~~~   84 (86)
                      +||+||++||+
T Consensus       157 ~~r~~~~~~A~  167 (167)
T 3fn1_B          157 KVDDYIKRYAR  167 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999984

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=5.7e-33  Score=178.37  Aligned_cols=84  Identities=39%  Similarity=0.670  Sum_probs=81.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCC--CCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~--W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+.+|.||+++|.+.  |+|+++|++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|
T Consensus        78 pP~v~F~t~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~  157 (163)
T 3rcz_B           78 PPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ  157 (163)
T ss_dssp             CCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            59999999999999999999999999864  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 034713           79 VEQSWT   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      |++||.
T Consensus       158 ~~~ya~  163 (163)
T 3rcz_B          158 ARENAP  163 (163)
T ss_dssp             HHHTCC
T ss_pred             HHHhCc
Confidence            999973

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=5.5e-33  Score=182.66  Aligned_cols=84  Identities=32%  Similarity=0.535  Sum_probs=82.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|+|+|.|+||||||+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus       111 PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~  190 (194)
T 3bzh_A          111 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK  190 (194)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CccccccCCCccceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      +||+
T Consensus       191 ~ya~  194 (194)
T 3bzh_A          191 RYAT  194 (194)
T ss_dssp             HHCC
T ss_pred             HhhC
Confidence            9984

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=5.4e-33  Score=177.39  Aligned_cols=84  Identities=39%  Similarity=0.637  Sum_probs=81.7

Q ss_pred             CCeEEEecCCccccccCCCceeeccccC--CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~--~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+.+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|
T Consensus        72 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~  151 (157)
T 2gjd_A           72 PPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQ  151 (157)
T ss_dssp             CCEEECCTTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeeeccCCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            5999999999999999999999999987  79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 034713           79 VEQSWT   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      |++||+
T Consensus       152 ~~~~a~  157 (157)
T 2gjd_A          152 AKQYSK  157 (157)
T ss_dssp             HHHTBC
T ss_pred             HHHhcC
Confidence            999984

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=2.4e-33  Score=186.90  Aligned_cols=85  Identities=33%  Similarity=0.596  Sum_probs=82.5

Q ss_pred             CCeEEEecCCcccccc-CCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVY-ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~-~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+ .+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++||+||
T Consensus        86 PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t  165 (216)
T 2pwq_A           86 PPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWT  165 (216)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcccccCCCcCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            5999999999999999 489999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||+.
T Consensus       166 ~~ya~~  171 (216)
T 2pwq_A          166 KTFATG  171 (216)
T ss_dssp             HHHSCC
T ss_pred             HHhcCC
Confidence            999974

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=9e-33  Score=176.98  Aligned_cols=85  Identities=36%  Similarity=0.653  Sum_probs=81.8

Q ss_pred             CCeEEEecCCccccccCCCceeeccccC--CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~--~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+.+|.||+++|..  +|+|+++|.+||.+|++||.+|++++|+|.+|+.+|++|+++|.++||+|
T Consensus        75 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~  154 (161)
T 2grr_A           75 PPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ  154 (161)
T ss_dssp             CCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCEEEEecCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            5999999999999999999999999986  79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      |++||++
T Consensus       155 ~~~~a~~  161 (161)
T 2grr_A          155 AKKFAPS  161 (161)
T ss_dssp             HHHTCC-
T ss_pred             HHHHhcC
Confidence            9999864

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=2.9e-33  Score=177.96  Aligned_cols=85  Identities=31%  Similarity=0.625  Sum_probs=82.0

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+. +|.||+++|+++|+|+++|.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|
T Consensus        62 pP~v~f~t~i~HPni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~  141 (152)
T 2onu_A           62 SPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEY  141 (152)
T ss_dssp             CCEEEESSCCCCTTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeEEEecCCccCcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            59999999999999995 9999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      +++||+.
T Consensus       142 ~~~~a~~  148 (152)
T 2onu_A          142 VKLYASK  148 (152)
T ss_dssp             HHHHSCG
T ss_pred             HHHhccC
Confidence            9999975

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.3e-33  Score=178.50  Aligned_cols=85  Identities=18%  Similarity=0.497  Sum_probs=80.4

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+.+|.||+++|. ++|+|++++.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+
T Consensus        65 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~  144 (154)
T 1c4z_D           65 PPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFT  144 (154)
T ss_dssp             CCEEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHH
T ss_pred             CCEEEEeCCCccccCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            599999999999999999999999997 7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||++
T Consensus       145 ~~~a~~  150 (154)
T 1c4z_D          145 KKYGEK  150 (154)
T ss_dssp             TTC---
T ss_pred             HHhccc
Confidence            999975

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.98  E-value=1.8e-33  Score=183.05  Aligned_cols=85  Identities=28%  Similarity=0.633  Sum_probs=82.9

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+. +|.||+++|+++|+|+++|.+||.+ |++||.+|++++|+|.+||.+|++|+++|.++||+|
T Consensus        84 PP~V~F~t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~  163 (179)
T 2z5d_A           84 SPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEY  163 (179)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CceEEEecCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            59999999999999998 9999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      +++||+.
T Consensus       164 ~~~~a~~  170 (179)
T 2z5d_A          164 IQKYATE  170 (179)
T ss_dssp             HHHHSSH
T ss_pred             HHHHccc
Confidence            9999974

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=99.98  E-value=2.2e-32  Score=185.77  Aligned_cols=85  Identities=25%  Similarity=0.476  Sum_probs=82.6

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||
T Consensus       123 PP~V~F~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t  202 (253)
T 3e46_A          123 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  202 (253)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCeeeecCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999995 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      ++||+.
T Consensus       203 ~~yA~~  208 (253)
T 3e46_A          203 HVYAGA  208 (253)
T ss_dssp             HHHHCC
T ss_pred             HHhccc
Confidence            999974

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=99.98  E-value=1.7e-32  Score=178.45  Aligned_cols=84  Identities=38%  Similarity=0.602  Sum_probs=81.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.|||++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+| +|+++|.++|+++++
T Consensus        93 PP~V~F~T~i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~  171 (179)
T 1i7k_A           93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYS  171 (179)
T ss_dssp             CCEEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHH
T ss_pred             CceEEEecCCccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999999999999999999999999999999 999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +++++
T Consensus       172 ~~~~~  176 (179)
T 1i7k_A          172 KQVTS  176 (179)
T ss_dssp             TTCC-
T ss_pred             HHhcc
Confidence            98864

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=9.2e-32  Score=172.23  Aligned_cols=82  Identities=27%  Similarity=0.614  Sum_probs=79.7

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||++++
T Consensus        67 PP~v~f~t~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~  146 (160)
T 1y8x_A           67 PPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR  146 (160)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HH
Q 034713           81 QS   82 (86)
Q Consensus        81 ~~   82 (86)
                      ..
T Consensus       147 ~~  148 (160)
T 1y8x_A          147 GG  148 (160)
T ss_dssp             SE
T ss_pred             hC
Confidence            64

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.97  E-value=5e-32  Score=177.59  Aligned_cols=83  Identities=29%  Similarity=0.574  Sum_probs=80.4

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++
T Consensus        96 PP~v~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~  175 (190)
T 3o2u_A           96 PPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMS  175 (190)
T ss_dssp             CCEEEECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHB
T ss_pred             CceeEEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      .+.
T Consensus       176 ~~~  178 (190)
T 3o2u_A          176 GGS  178 (190)
T ss_dssp             TCE
T ss_pred             hcC
Confidence            653

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.97  E-value=2.6e-32  Score=176.43  Aligned_cols=85  Identities=28%  Similarity=0.574  Sum_probs=81.7

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHH-HHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSI-QSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i-~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+. +|.||+++|.++|+|+++|.+||.+| ++||.+|++++|+|.+||.+|++|+++|.++||+|
T Consensus        71 PP~v~F~t~i~HPNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~  150 (171)
T 1yf9_A           71 SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREH  150 (171)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCeEEeecCcccccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            59999999999999995 99999999999999999999999997 89999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      +++||+.
T Consensus       151 ~~~~a~~  157 (171)
T 1yf9_A          151 VSTHATP  157 (171)
T ss_dssp             HHHHCCH
T ss_pred             HHHHcCh
Confidence            9999863

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=1.9e-31  Score=173.61  Aligned_cols=83  Identities=25%  Similarity=0.579  Sum_probs=80.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++
T Consensus        87 PP~v~F~t~i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~  166 (180)
T 2nvu_C           87 PPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR  166 (180)
T ss_dssp             CCEEEECSCCCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCcCceeccCccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      ...
T Consensus       167 ~~~  169 (180)
T 2nvu_C          167 GGY  169 (180)
T ss_dssp             SEE
T ss_pred             hCC
Confidence            643

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=99.97  E-value=3.3e-31  Score=171.29  Aligned_cols=84  Identities=23%  Similarity=0.479  Sum_probs=80.9

Q ss_pred             CCeEEEec-CCcccccc-CCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh-CHHHHHHHHH
Q 034713            1 MTDFKFQF-CLVLAKVY-ADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE-NKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t-~i~HPNV~-~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~-~~~~f~~~~~   76 (86)
                      +|+|+|.| +||||||+ .+|.||+++|. ++|+|+++|.+||.+|++||.+|++++|+|.+||.+|++ |+++|.++||
T Consensus        81 PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~  160 (172)
T 2y9m_A           81 PPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK  160 (172)
T ss_dssp             CCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHH
Confidence            59999999 99999995 79999999998 899999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHhh
Q 034713           77 EIVEQSWT   84 (86)
Q Consensus        77 ~~~~~~~~   84 (86)
                      +|++++..
T Consensus       161 ~~~~~~~~  168 (172)
T 2y9m_A          161 YFLAERER  168 (172)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99999874

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=99.97  E-value=2.5e-31  Score=173.35  Aligned_cols=84  Identities=35%  Similarity=0.633  Sum_probs=80.1

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHh-
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE-   66 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~-   66 (86)
                      +|+|+|.|+||||||+++|.||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+|+.+|++ 
T Consensus        71 PP~v~f~t~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~  150 (183)
T 3rz3_A           71 PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKW  150 (183)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHH
T ss_pred             CCeeEecCCCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Confidence            599999999999999999999999997             789999999999999999999999999999999999998 


Q ss_pred             -----CHHHHHHHHHHHHHHHhh
Q 034713           67 -----NKREYNRRVREIVEQSWT   84 (86)
Q Consensus        67 -----~~~~f~~~~~~~~~~~~~   84 (86)
                           ++++|.++||+++++++.
T Consensus       151 ~~~~~~~~~y~~~v~~~v~~s~~  173 (183)
T 3rz3_A          151 KESKGKDREYTDIIRKQVLGTKV  173 (183)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHH
Confidence                 789999999999999875

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.97  E-value=7.4e-31  Score=187.33  Aligned_cols=85  Identities=38%  Similarity=0.677  Sum_probs=83.2

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|++||++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        66 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~  145 (399)
T 4ddg_A           66 PPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ  145 (399)
T ss_dssp             CCEEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEeeccccccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +|+..
T Consensus       146 ~~a~~  150 (399)
T 4ddg_A          146 KYAMG  150 (399)
T ss_dssp             HHTSC
T ss_pred             Hhhcc
Confidence            99974

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=1.2e-30  Score=168.39  Aligned_cols=80  Identities=26%  Similarity=0.480  Sum_probs=76.2

Q ss_pred             CCeEEEecCCccccc-cCCCceeecccc--CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKV-YADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE   77 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV-~~~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~   77 (86)
                      +|+|+|.|+|||||| +.+|.||+++|+  ++|+|+++|.+||.+|++||.+|++++|+|.+||++|++|+++|.++ |+
T Consensus        86 PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~  164 (169)
T 1yrv_A           86 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LR  164 (169)
T ss_dssp             CCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HH
T ss_pred             CCcceecCCCccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HH
Confidence            599999999999999 789999999998  89999999999999999999999999999999999999999999998 88


Q ss_pred             HHHH
Q 034713           78 IVEQ   81 (86)
Q Consensus        78 ~~~~   81 (86)
                      ++++
T Consensus       165 ~v~~  168 (169)
T 1yrv_A          165 LFNR  168 (169)
T ss_dssp             HHC-
T ss_pred             HhhC
Confidence            8764

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=99.96  E-value=1e-30  Score=169.06  Aligned_cols=78  Identities=36%  Similarity=0.671  Sum_probs=48.3

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      +|+|+|.|+||||||+.+|.||+++|.             ++|+|+++|++||.+|++||.+|++++|+|.+||++|++|
T Consensus        81 PP~v~F~T~i~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d  160 (172)
T 2awf_A           81 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWRED  160 (172)
T ss_dssp             CCEEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------
T ss_pred             CCcccccCCCccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHC
Confidence            599999999999999999999999996             6899999999999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHH
Q 034713           68 KR-EYNRRVREI   78 (86)
Q Consensus        68 ~~-~f~~~~~~~   78 (86)
                      ++ +|.++||+|
T Consensus       161 ~~~~f~~~vr~~  172 (172)
T 2awf_A          161 RNGEFKRKVARC  172 (172)
T ss_dssp             ------------
T ss_pred             cHHHHHHHHHhC
Confidence            99 999999975

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.95  E-value=7.2e-28  Score=154.94  Aligned_cols=77  Identities=17%  Similarity=0.393  Sum_probs=71.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHH-HHHHhhcC--CCCCCCccHHHHHHHHhCHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILT-SIQSLLCD--PNPNSPANSEAARMFSENKREYNRRVRE   77 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~-~i~~ll~~--p~~~~p~n~~aa~~~~~~~~~f~~~~~~   77 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|++++.++|. .|++|+..  |++++|+|.+||.+|++|+++|.++||+
T Consensus        85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr  164 (167)
T 4ds2_A           85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR  164 (167)
T ss_dssp             CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred             CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence            59999999999999999999999999999999999999765 67888875  8999999999999999999999999983

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=161.54  Aligned_cols=84  Identities=25%  Similarity=0.463  Sum_probs=78.5

Q ss_pred             CCeEEEecC-----CccccccCCCceeecccc-------CCCCCcc-cHHHHHHHHHHhhc--CCCCCCCccHHH--HHH
Q 034713            1 MTDFKFQFC-----LVLAKVYADGSICLDILQ-------NQWSPIY-DVAAILTSIQSLLC--DPNPNSPANSEA--ARM   63 (86)
Q Consensus         1 ~P~v~F~t~-----i~HPNV~~~G~vcl~~l~-------~~W~p~~-~l~~vl~~i~~ll~--~p~~~~p~n~~a--a~~   63 (86)
                      +|+|+|.|+     ||||||+.+|.|||++|+       ++|+|++ +|.+||.+|++||.  +|++++|+|.++  +.+
T Consensus       143 PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~  222 (323)
T 3ceg_A          143 PPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPS  222 (323)
T ss_dssp             CCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHH
T ss_pred             CCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhh
Confidence            599999998     999999999999999997       6899999 89999999999996  677799999987  678


Q ss_pred             HHhCHHHHHHHHHHHHHHHhh
Q 034713           64 FSENKREYNRRVREIVEQSWT   84 (86)
Q Consensus        64 ~~~~~~~f~~~~~~~~~~~~~   84 (86)
                      |.+|+++|.++||+||++||+
T Consensus       223 ~~~d~~~Y~~~vr~~t~k~A~  243 (323)
T 3ceg_A          223 GTQSSREYDGNIRQATVKWAM  243 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHHHHHHHHhh
Confidence            999999999999999999986

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.90  E-value=2.3e-25  Score=142.07  Aligned_cols=66  Identities=21%  Similarity=0.383  Sum_probs=60.8

Q ss_pred             CCeEEEecCCccccccCCCce---eeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSI---CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~v---cl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      +|+|+|.|+||||||+.+|.|   ||++|+ +|+|+++|++||.+|++||.+|++++|+|++||.+|.+|
T Consensus        88 PP~v~F~t~i~HPNV~~~G~icisCL~iL~-~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           88 PPTVKFDTKIEMSCVDNCGRVIKNNLHILK-NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CCEEEESBCCCCTTBCTTSBBCGGGSHHHH-TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             CCeEEEEcccccCCCccCCeEehhhccccc-CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            599999999999999999999   899987 599999999999999999999999999999999998765

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.88  E-value=1.9e-23  Score=133.68  Aligned_cols=61  Identities=16%  Similarity=0.335  Sum_probs=57.9

Q ss_pred             CCeEEEecCCcccccc-CCCceeecccc--CCCCCcccHHHHHHHHHHhhc-CCCCCCCccHHHH
Q 034713            1 MTDFKFQFCLVLAKVY-ADGSICLDILQ--NQWSPIYDVAAILTSIQSLLC-DPNPNSPANSEAA   61 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~-~~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~-~p~~~~p~n~~aa   61 (86)
                      +|+|+|.|+||||||+ .+|.||+++|.  ++|+|+++|++||.+|++||. +|++++|+|.|+|
T Consensus        92 PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A           92 PPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             CCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             CcEEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            5999999999999999 59999999998  899999999999999999995 6999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.87  E-value=2.8e-24  Score=134.54  Aligned_cols=63  Identities=16%  Similarity=0.344  Sum_probs=58.9

Q ss_pred             CCeEEEecCCccccccCC-Cce--eeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYAD-GSI--CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF   64 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~-G~v--cl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~   64 (86)
                      +|+|+|.|+||||||+.+ |.|  ||++|. +|+|+++|++||.+|++||.+|++++|+|++|+.+|
T Consensus        73 PP~v~f~t~i~HPnv~~~~G~i~~cL~~l~-~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           73 PPKVTFISKINLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             CCEEEESBCCCCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             CCceEEEcccccCCEeCCCCEEeeecccCC-CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            599999999999999985 999  999986 899999999999999999999999999999988654

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.87  E-value=4.2e-23  Score=133.21  Aligned_cols=61  Identities=16%  Similarity=0.335  Sum_probs=57.7

Q ss_pred             CCeEEEecCCcccccc-CCCceeecccc--CCCCCcccHHHHHHHHHHhhc-CCCCCCCccHHHH
Q 034713            1 MTDFKFQFCLVLAKVY-ADGSICLDILQ--NQWSPIYDVAAILTSIQSLLC-DPNPNSPANSEAA   61 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~-~~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~-~p~~~~p~n~~aa   61 (86)
                      +|+|+|.|+||||||+ .+|.||+++|.  ++|+|+++|++||.+|++||. .|+.++|+|.|||
T Consensus       102 PP~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          102 PPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CCEEEECBCCCCSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             CCeeEEecccccCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            5999999999999999 69999999998  899999999999999999997 5899999999987

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.85  E-value=4.7e-22  Score=122.59  Aligned_cols=54  Identities=24%  Similarity=0.448  Sum_probs=46.8

Q ss_pred             CCeEEEecCC-ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCC
Q 034713            1 MTDFKFQFCL-VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS   54 (86)
Q Consensus         1 ~P~v~F~t~i-~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~   54 (86)
                      +|+|+|.|+| |||||+.+|.||+++|.++|+|++++.+||.+|++||.+|+.+.
T Consensus        69 PP~v~f~t~i~~HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           69 PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             CCEEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             CCEEEEeCCCCCCCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence            5999999997 99999999999999999999999999999999999999998753

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.84  E-value=1.7e-21  Score=121.67  Aligned_cols=52  Identities=25%  Similarity=0.468  Sum_probs=49.9

Q ss_pred             CCeEEEecCC-ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCC
Q 034713            1 MTDFKFQFCL-VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP   52 (86)
Q Consensus         1 ~P~v~F~t~i-~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~   52 (86)
                      +|+|+|.|+| |||||+.+|.||+++|.++|+|+++|.+||.+|++||.+|+.
T Consensus        83 PP~v~f~t~i~~HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           83 PPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CCEEEECSSCCCCTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCEEEEeCCCCCCCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            5999999997 999999999999999999999999999999999999999975

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.83  E-value=4.2e-22  Score=130.04  Aligned_cols=76  Identities=20%  Similarity=0.405  Sum_probs=65.4

Q ss_pred             CCeEEEecCCccc-cccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLA-KVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HP-NV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|++||| ||+.+|.|||++|. ++|+|+++|++||.+|++||.+|+...        .|..++.+|.+++++.
T Consensus       105 PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~  176 (186)
T 1zuo_A          105 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQ  176 (186)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHH
T ss_pred             CCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHH
Confidence            5999999999999 69999999999997 789999999999999999999986543        3455677888888888


Q ss_pred             HHHHhh
Q 034713           79 VEQSWT   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      +.+++.
T Consensus       177 ~~~~~~  182 (186)
T 1zuo_A          177 SYNSIV  182 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777653

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.80  E-value=4.3e-20  Score=115.37  Aligned_cols=48  Identities=35%  Similarity=0.616  Sum_probs=46.3

Q ss_pred             CCeEEEecCCc--cccccCCCceeeccccCCCCCcccHHHHHHHHHHhhc
Q 034713            1 MTDFKFQFCLV--LAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLC   48 (86)
Q Consensus         1 ~P~v~F~t~i~--HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~   48 (86)
                      +|+|+|.|+||  ||||+.+|.||+++|+++|+|+++|++||.+|++||.
T Consensus        87 PP~v~F~T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           87 SPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             CCEEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            59999999999  9999999999999999999999999999999999984

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.71  E-value=2.4e-17  Score=107.61  Aligned_cols=53  Identities=21%  Similarity=0.455  Sum_probs=42.9

Q ss_pred             CCeEEEecCCccccccCCCceeeccc---cCCCCCcccHHHHHHHHHHhhcCCCCCCC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDIL---QNQWSPIYDVAAILTSIQSLLCDPNPNSP   55 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l---~~~W~p~~~l~~vl~~i~~ll~~p~~~~p   55 (86)
                      +|+|+|.|+  ||||+.+|.|||++|   .++|+|+++|.+||.+|++||.+|+++..
T Consensus        77 PP~v~f~T~--~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g  132 (187)
T 2f4w_A           77 PPSIYMITP--NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG  132 (187)
T ss_dssp             CCEEEECSC--CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred             CCcccccCC--CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence            599999999  999999999999999   58899999999999999999999987643

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.46  E-value=6.2e-14  Score=89.70  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=46.9

Q ss_pred             CCeEEEec-------C---Cc-cccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhcCCCCCC
Q 034713            1 MTDFKFQF-------C---LV-LAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLCDPNPNS   54 (86)
Q Consensus         1 ~P~v~F~t-------~---i~-HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~~p~~~~   54 (86)
                      +|.|.|.+       +   |+ ||||+.+|+||+++|. +|+| +.++.++|.+|+++|.+|+++.
T Consensus        97 PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~-~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A           97 PPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH-AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             CCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBCCGGGG-SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             CCEEEEECCCccccccccccCCCCCCCCCCcEeCcccc-cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            58887755       1   88 9999999999999995 7999 5799999999999999999875

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.25  E-value=7.8e-13  Score=84.75  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=36.7

Q ss_pred             CCeEEEecC-CccccccCCCceeecccc-C---CCCCcccHHHHHH
Q 034713            1 MTDFKFQFC-LVLAKVYADGSICLDILQ-N---QWSPIYDVAAILT   41 (86)
Q Consensus         1 ~P~v~F~t~-i~HPNV~~~G~vcl~~l~-~---~W~p~~~l~~vl~   41 (86)
                      +|+|+|.++ +|||||+.+|+||||+|. +   .|+|.++|.++|.
T Consensus        99 PPeV~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A           99 APEIAVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             CCCCBCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             CCeeeeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            699999998 999999999999999994 3   4559999999984

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=98.86  E-value=1.8e-09  Score=67.94  Aligned_cols=46  Identities=20%  Similarity=0.234  Sum_probs=40.3

Q ss_pred             CCeEEEecC------CccccccCCCceeeccccCCCCC-cccHHHHHHHHHHhhc
Q 034713            1 MTDFKFQFC------LVLAKVYADGSICLDILQNQWSP-IYDVAAILTSIQSLLC   48 (86)
Q Consensus         1 ~P~v~F~t~------i~HPNV~~~G~vcl~~l~~~W~p-~~~l~~vl~~i~~ll~   48 (86)
                      +|.| |.++      .+||||+.+|+||+++|. +|++ ..+|.+++..++++|.
T Consensus        85 pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~-~W~~~~snL~~ll~~l~~~F~  137 (146)
T 3obq_A           85 PPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH-EWKHPQSDLLGLIQVMIVVFG  137 (146)
T ss_dssp             CCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH-TCCTTTCCHHHHHHHHHHHHH
T ss_pred             CCEE-EEeCCCCCEECCCCCCCCCCCEeccccc-ccCCCCCCHHHHHHHHHHHHh
Confidence            4767 7766      589999999999999996 4987 7899999999999987

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=98.38  E-value=2.7e-08  Score=62.85  Aligned_cols=31  Identities=19%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             CCeEEEecC-CccccccCCCceeeccccCCCCCcc
Q 034713            1 MTDFKFQFC-LVLAKVYADGSICLDILQNQWSPIY   34 (86)
Q Consensus         1 ~P~v~F~t~-i~HPNV~~~G~vcl~~l~~~W~p~~   34 (86)
                      +|+|+|.+. ++|||++.+|+|||+++   |+|.+
T Consensus       101 PPeI~Fp~ldgkt~kmYr~GkICLdIh---wkPlW  132 (168)
T 3kpa_A          101 PPEIALPELEGKTVKMYRGGKICMTTH---FFPLW  132 (168)
T ss_dssp             CCCCBCGGGTTTCSSEETTTEECCCTT---HHHHH
T ss_pred             CCEeecccccCcCccccCCCcEEeccc---cchhh
Confidence            699999995 89999999999999985   66654

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=93.35  E-value=0.015  Score=34.61  Aligned_cols=35  Identities=9%  Similarity=-0.045  Sum_probs=0.0

Q ss_pred             CCCCCCCccHHHHHHHHhCHHHHHHHHHHHHHHHh
Q 034713           49 DPNPNSPANSEAARMFSENKREYNRRVREIVEQSW   83 (86)
Q Consensus        49 ~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~~   83 (86)
                      .-....|.+.++|++|+++++.|...||.|+.-++
T Consensus        20 ~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a   54 (108)
T 2cwb_A           20 GETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA   54 (108)
T ss_dssp             -----------------------------------
T ss_pred             CcccCCchhHHHHHHHHhchhccccccccccccCc
Confidence            33456899999999999999999999999995554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-25
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-22
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-20
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-20
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	7e-20
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	8e-20
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-19
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	6e-19
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	7e-19
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	9e-19
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	1e-18
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-18
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-17
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	1e-17
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-17
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	4e-17
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-16
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	7e-16
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	1e-15
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	3e-15
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	4e-14
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	4e-13
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	5e-13
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	6e-13
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	4e-12
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-11
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	3e-11
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-10
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	4e-10
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-09
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	8e-08

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 90.6 bits (224), Expect = 1e-25
 Identities = 55/69 (79%), Positives = 64/69 (92%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           VYADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+++ EN+REY +R
Sbjct: 80  VYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKR 139

Query: 75  VREIVEQSW 83
           V++IVEQSW
Sbjct: 140 VQQIVEQSW 148

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 82.9 bits (204), Expect = 1e-22
 Identities = 48/72 (66%), Positives = 59/72 (81%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           VYA+G ICLDILQN+W+P YDVA+ILTSIQSL  DPNP SPAN EAA +F ++K +Y +R
Sbjct: 80  VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKR 139

Query: 75  VREIVEQSWTAD 86
           V+E VE+SW  D
Sbjct: 140 VKETVEKSWEDD 151

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 78.3 bits (192), Expect = 1e-20
 Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 13/82 (15%)

Query: 15  VYADGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +  +G++C+ IL +             +W P++ V  IL S+ S+L DPN  SPAN +AA
Sbjct: 78  IDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAA 137

Query: 62  RMFSENKREYNRRVREIVEQSW 83
           +M  EN  E+ ++V + V +S 
Sbjct: 138 KMQRENYAEFKKKVAQCVRRSQ 159

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 77.9 bits (191), Expect = 1e-20
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 13/81 (16%)

Query: 15  VYADGSICLDILQNQW-------------SPIYDVAAILTSIQSLLCDPNPNSPANSEAA 61
           +Y +G +C+ IL +               SP+  V  IL S+ S+L +PN  S AN +A 
Sbjct: 81  IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDAC 140

Query: 62  RMFSENKREYNRRVREIVEQS 82
            ++ +N+ E+ R+V+  + +S
Sbjct: 141 ILWRDNRPEFERQVKLSILKS 161

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 7e-20
 Identities = 30/70 (42%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G+I LDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + 
Sbjct: 78  VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKY 136

Query: 75  VREIVEQSWT 84
           ++E   +  T
Sbjct: 137 LQETYSKQVT 146

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 76.0 bits (186), Expect = 8e-20
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
               G+ICLDIL+++WSP   +   L SIQ++L DP P  P ++E A+M  EN   + + 
Sbjct: 92  SSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQT 151

Query: 75  VREIVEQ 81
            +   E 
Sbjct: 152 AKLWTET 158

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 74.8 bits (183), Expect = 2e-19
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +   G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +N++    +
Sbjct: 80  IDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAK 139

Query: 75  VREIVEQ 81
            RE  + 
Sbjct: 140 AREWTKL 146

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 73.6 bits (180), Expect = 6e-19
 Identities = 26/66 (39%), Positives = 38/66 (57%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V A+G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R
Sbjct: 83  VGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAAR 142

Query: 75  VREIVE 80
            R + E
Sbjct: 143 ARLLTE 148

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 73.3 bits (179), Expect = 7e-19
 Identities = 31/67 (46%), Positives = 47/67 (70%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+ 
Sbjct: 78  INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQL 137

Query: 75  VREIVEQ 81
            RE  ++
Sbjct: 138 AREWTQK 144

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 9e-19
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +    
Sbjct: 79  VDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET 138

Query: 75  VREIVEQ 81
            R     
Sbjct: 139 ARAWTRL 145

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-18
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           + + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R 
Sbjct: 79  INSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRM 138

Query: 75  VREIVEQ 81
            R+  ++
Sbjct: 139 ARQWTKR 145

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 71.3 bits (174), Expect = 4e-18
 Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           V   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA M+  N+ EY + 
Sbjct: 86  VDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKV 144

Query: 75  VREIVEQS 82
           + E  + +
Sbjct: 145 LHEKYKTA 152

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 1e-17
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
           +  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + 
Sbjct: 78  IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQN 137

Query: 75  VREIVEQSW 83
           V+  +   +
Sbjct: 138 VQRSMRGGY 146

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 1e-17
 Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 15  VYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           +   G +CL ++  + W P      ++ S+ +L+ DP P  P  ++ A  +S++++++ +
Sbjct: 76  IDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCK 135

Query: 74  RVREIVEQ 81
              E  ++
Sbjct: 136 NAEEFTKK 143

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 69.0 bits (168), Expect = 3e-17
 Identities = 23/64 (35%), Positives = 38/64 (59%)

Query: 18  DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 77
            G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+    
Sbjct: 83  TGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAAL 142

Query: 78  IVEQ 81
               
Sbjct: 143 WTRL 146

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (167), Expect = 4e-17
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRR 74
               G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + + 
Sbjct: 85  SSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQT 144

Query: 75  VREIVEQ 81
            R     
Sbjct: 145 ARLWAHV 151

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 3e-16
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 15  VYADGSICLDILQNQW-SPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
           V  +G ICL I+ ++   P      +L ++  L+  PN   P   + A + ++N   + +
Sbjct: 77  VDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRK 136

Query: 74  RVREIVEQ 81
              E   +
Sbjct: 137 NAEEFTLR 144

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 7e-16
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 15  VYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 72
               G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y 
Sbjct: 82  DPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYR 141

Query: 73  RRVRE 77
             +R 
Sbjct: 142 TILRL 146

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 1e-15
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 15  VYADGSICLDIL--QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYN 72
           VY  G++ L IL     W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY 
Sbjct: 84  VYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYE 143

Query: 73  RRVREIVEQ 81
           +RVR   ++
Sbjct: 144 KRVRAQAKK 152

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 61.3 bits (148), Expect = 4e-14
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 15  VYADGSICLDILQNQWSPIYDV-AAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 73
               GS+CLD++   W+P+Y +       +  LL  PNP+ P N +AA +   ++  ++ 
Sbjct: 74  DERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDA 133

Query: 74  RVREIVEQ 81
            +RE V  
Sbjct: 134 LLREHVST 141

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 4e-13
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)

Query: 15  VYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 70
           + + G ICLD+L    +  W P  ++A +LTSIQ L+ +PNP+ P  ++ +  F  NK  
Sbjct: 79  IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPA 138

Query: 71  YNRRVREIVEQ 81
           + +  R+  E+
Sbjct: 139 FLKNARQWTEK 149

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 5e-13
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 4   FKFQFCLVLAKVYADGSICLDIL---QNQWSPIYDVAAILTSIQSLLCDPNP--NSPANS 58
                     +   +  +CL I     + W+P + V+ ILT + S + +  P   S   S
Sbjct: 65  PSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETS 124

Query: 59  EAARM-FSENKREYNRRVREIVE 80
           +  +   +     +N + +   E
Sbjct: 125 DFTKRQLAVQSLAFNLKDKVFCE 147

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (140), Expect = 6e-13
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 7   QFCLVLAKVYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPN--SPANSEAARM 63
              L    V   G++C+++L  Q WS  Y + +++  I + L          AN     +
Sbjct: 89  LPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL 148

Query: 64  FSENKREYNRRVRE 77
               ++ YN  V+ 
Sbjct: 149 A-RAQQSYNSIVQI 161

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 55.7 bits (134), Expect = 4e-12
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 5   KFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP-NPNSPANSEAARM 63
           K     V +         + +L   W   Y +  +L  ++ L+    N   P   E    
Sbjct: 80  KINMNGVNSSNGVVDPRAISVLAK-WQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ-C 137

Query: 64  FS 65
           +S
Sbjct: 138 YS 139

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 54.3 bits (130), Expect = 1e-11
 Identities = 7/51 (13%), Positives = 14/51 (27%), Gaps = 1/51 (1%)

Query: 15  VYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF 64
               G +  D      W   Y +  +L  ++  +  P        +    F
Sbjct: 86  NPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 136

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 3e-11
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
           VY++G ICL IL   WSP   V ++  SI S+L
Sbjct: 84  VYSNGHICLSILTEDWSPALSVQSVCLSIISML 116

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 2e-10
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP 52
           + ++G I L IL        ++  ++  + SLL +P  
Sbjct: 113 IDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQ 150

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 49.7 bits (118), Expect = 4e-10
 Identities = 12/33 (36%), Positives = 23/33 (69%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLL 47
           VY++G ICL +L + ++P   ++ ++ SI S+L
Sbjct: 76  VYSNGDICLSLLGDDYNPSLSISGLVLSIISML 108

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (115), Expect = 2e-09
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 15  VYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNP 52
           V A+G I L  L     P  D+  ++  +  +  D  P
Sbjct: 101 VDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEPP 138

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 8e-08
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 13/49 (26%)

Query: 15  VYADGSICLDILQN-------------QWSPIYDVAAILTSIQSLLCDP 50
           V  +G +C+ IL               +W PI+ V  I+ S+ S+L DP
Sbjct: 77  VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.97
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.97
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	99.97
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.97
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.97
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.97
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.97
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.96
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	99.96
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.96
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.95
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.83
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.81
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.8
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.79
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.78
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.76
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.73
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.35
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.16

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=2.4e-33  Score=175.76  Aligned_cols=84  Identities=32%  Similarity=0.535  Sum_probs=82.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|+|+|.|+||||||+++|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|++
T Consensus        65 pP~v~f~t~i~HPnv~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~  144 (148)
T d1y6la_          65 PPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTK  144 (148)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCcCceECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      |||+
T Consensus       145 k~A~  148 (148)
T d1y6la_         145 RYAT  148 (148)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9985

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.7e-32  Score=172.05  Aligned_cols=84  Identities=24%  Similarity=0.472  Sum_probs=81.8

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||++ +|.||++++.+.|+|++||.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+||
T Consensus        70 pP~v~f~t~i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t  149 (154)
T d2bepa1          70 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  149 (154)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcceecccCCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHH
Confidence            69999999999999997 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 034713           80 EQSWT   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      +|||.
T Consensus       150 ~k~A~  154 (154)
T d2bepa1         150 HVYAG  154 (154)
T ss_dssp             HHHSC
T ss_pred             HHhcC
Confidence            99983

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=99.97  E-value=3.1e-32  Score=170.90  Aligned_cols=83  Identities=69%  Similarity=1.071  Sum_probs=81.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|.+|+++|.++||+||+
T Consensus        66 pP~v~f~t~i~HPnI~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~  145 (149)
T d1z3da1          66 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVE  145 (149)
T ss_dssp             CCEEEESSCCCCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEecCcccceeEcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      |+.
T Consensus       146 ks~  148 (149)
T d1z3da1         146 QSW  148 (149)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            974

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=99.97  E-value=3.3e-32  Score=170.12  Aligned_cols=84  Identities=38%  Similarity=0.713  Sum_probs=82.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+++|.||+++|.+.|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||++++
T Consensus        64 pP~v~f~t~i~HPnV~~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~  143 (147)
T d1z2ua1          64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQ  143 (147)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceEEEecCCceeeECCCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      |||.
T Consensus       144 k~A~  147 (147)
T d1z2ua1         144 KYAM  147 (147)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9984

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=99.97  E-value=1.8e-32  Score=172.03  Aligned_cols=85  Identities=29%  Similarity=0.507  Sum_probs=83.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.+.|+|++++.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+||+
T Consensus        65 pP~v~f~t~i~HPni~~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~  144 (149)
T d1j7db_          65 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR  144 (149)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceeeecCCCCCceECCCCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +||++
T Consensus       145 kyA~~  149 (149)
T d1j7db_         145 LYAMN  149 (149)
T ss_dssp             HHSCC
T ss_pred             HhccC
Confidence            99974

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=99.97  E-value=3.2e-32  Score=171.18  Aligned_cols=86  Identities=58%  Similarity=0.969  Sum_probs=83.6

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|++|||||+.+|.||++++.+.|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++
T Consensus        66 pP~v~f~t~i~HPnI~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~  145 (153)
T d1ayza_          66 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVE  145 (153)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCeeeeccCCCccCCCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcC
Q 034713           81 QSWTAD   86 (86)
Q Consensus        81 ~~~~~~   86 (86)
                      +++++|
T Consensus       146 ks~~~~  151 (153)
T d1ayza_         146 KSWEDD  151 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            998754

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.97  E-value=4.9e-32  Score=170.08  Aligned_cols=85  Identities=21%  Similarity=0.412  Sum_probs=82.2

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+++|.||+++|. +.|+|++|+.+||.+|+++|.+|++++|+|.+|+.+|.+|+++|.++||+||
T Consensus        63 pP~v~f~t~i~HpnI~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~  142 (150)
T d1wzva1          63 PPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT  142 (150)
T ss_dssp             CCEEEESSCCCBTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CceeeccCCCCcceECCCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHH
Confidence            699999999999999999999999996 6799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhc
Q 034713           80 EQSWTA   85 (86)
Q Consensus        80 ~~~~~~   85 (86)
                      +|||.+
T Consensus       143 ~kya~~  148 (150)
T d1wzva1         143 LRFGVD  148 (150)
T ss_dssp             HHHCEE
T ss_pred             HHhccc
Confidence            999974

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.97  E-value=2.5e-32  Score=172.00  Aligned_cols=85  Identities=29%  Similarity=0.529  Sum_probs=83.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      .|+|+|.|+||||||+.+|.||++++.+.|+|+++|.+||.+|++||.+|++++|+|.+||.+|.+|+++|.++||+||+
T Consensus        66 pP~v~F~t~i~HPnI~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~  145 (152)
T d1jata_          66 APKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK  145 (152)
T ss_dssp             CCEEEECSCCCBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcEEEecCCCCCCcCCCCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      +||++
T Consensus       146 ~~a~~  150 (152)
T d1jata_         146 LYAKK  150 (152)
T ss_dssp             HHSEE
T ss_pred             HHhcc
Confidence            99975

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=168.04  Aligned_cols=85  Identities=29%  Similarity=0.577  Sum_probs=82.3

Q ss_pred             CCeEEEecCCccccccCCCceeecccc----CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ----NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~----~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~   76 (86)
                      +|+|+|.|+||||||+++|.||+++|.    +.|+|++++.+||.+|+++|.+|++++|+|.+|+.+|.+|+++|.++||
T Consensus        65 pP~v~f~t~i~HPnV~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r  144 (154)
T d1yh2a1          65 PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNAR  144 (154)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHH
T ss_pred             CceeeccCCCCcCCcCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHH
Confidence            599999999999999999999999996    5799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 034713           77 EIVEQSWTA   85 (86)
Q Consensus        77 ~~~~~~~~~   85 (86)
                      +||+|||+.
T Consensus       145 ~~~~k~a~~  153 (154)
T d1yh2a1         145 QWTEKHARQ  153 (154)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHhcC
Confidence            999999975

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=99.97  E-value=7.4e-32  Score=168.94  Aligned_cols=83  Identities=39%  Similarity=0.600  Sum_probs=80.5

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.++|+|++++.+||.+|+++|.+|++++|+|.+||.+|+ |+++|.++|+++++
T Consensus        64 pP~v~f~t~i~HPnV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~  142 (146)
T d1i7ka_          64 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYS  142 (146)
T ss_dssp             CCEEEESSCCCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHH
T ss_pred             CceeeecCCCCcccCCCCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999995 99999999999999


Q ss_pred             HHhh
Q 034713           81 QSWT   84 (86)
Q Consensus        81 ~~~~   84 (86)
                      |+|+
T Consensus       143 K~~~  146 (146)
T d1i7ka_         143 KQVT  146 (146)
T ss_dssp             TTCC
T ss_pred             ccCC
Confidence            9974

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.97  E-value=6.8e-32  Score=169.90  Aligned_cols=83  Identities=33%  Similarity=0.527  Sum_probs=81.1

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||++++.++|+|++++.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+||+
T Consensus        69 pP~v~f~t~i~HPnI~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~  148 (151)
T d1zdna1          69 PPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE  148 (151)
T ss_dssp             CCEEEESSCCCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CceeecCCCCCCceecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      +|.
T Consensus       149 ~~g  151 (151)
T d1zdna1         149 IHG  151 (151)
T ss_dssp             HHC
T ss_pred             hhC
Confidence            983

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=99.97  E-value=2.1e-31  Score=167.06  Aligned_cols=84  Identities=29%  Similarity=0.577  Sum_probs=81.4

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.+|++++.+.|+|++||.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+||
T Consensus        65 pP~v~f~t~i~HpnI~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~  144 (149)
T d1fzya_          65 PPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWT  144 (149)
T ss_dssp             CCEEEESSCCCBTTBCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcEEEecCCCcCCcccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHH
Confidence            59999999999999997 78999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 034713           80 EQSWT   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      ++||+
T Consensus       145 ~k~A~  149 (149)
T d1fzya_         145 RLYAS  149 (149)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            99985

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.97  E-value=1.8e-31  Score=168.66  Aligned_cols=85  Identities=34%  Similarity=0.601  Sum_probs=81.9

Q ss_pred             CCeEEEecCCccccccCCCceeecccc--CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+.+|.||+++|.  ++|+|++||.+||.+|+++|.+|++++|+|.+||.+|.+|+++|.++||+|
T Consensus        70 pP~v~f~t~i~HPnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~  149 (156)
T d2uyza1          70 PPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ  149 (156)
T ss_dssp             CCEEEESSCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CceeeeccccccccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            599999999999999999999999996  479999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q 034713           79 VEQSWTA   85 (86)
Q Consensus        79 ~~~~~~~   85 (86)
                      ++|||++
T Consensus       150 ~~k~A~~  156 (156)
T d2uyza1         150 AKKFAPS  156 (156)
T ss_dssp             HHHTCCC
T ss_pred             HHHHCCC
Confidence            9999974

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.97  E-value=7e-31  Score=166.46  Aligned_cols=85  Identities=35%  Similarity=0.597  Sum_probs=80.9

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      .|+|+|.|+||||||+.+|.||+++|.             ++|+|+++|.+||.+|+++|.+|++++|+|.+||++|.+|
T Consensus        64 pP~v~f~t~i~HPnI~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~  143 (161)
T d1pzva_          64 PPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQREN  143 (161)
T ss_dssp             CCEEEECSCCCCTTBCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTC
T ss_pred             CCeEEecCCCCCcccCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHC
Confidence            599999999999999999999999995             3599999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 034713           68 KREYNRRVREIVEQSWTA   85 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~~~   85 (86)
                      +++|.++|++|++|+.++
T Consensus       144 ~~~f~~~a~~~v~k~~e~  161 (161)
T d1pzva_         144 YAEFKKKVAQCVRRSQEE  161 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            999999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=6.6e-31  Score=166.91  Aligned_cols=84  Identities=32%  Similarity=0.561  Sum_probs=81.3

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+. +|.||++++.+.|+|+++|.+||.+|+++|.+|++++|+|.+||.+|.+|+++|.++||+||
T Consensus        77 pP~V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~t  156 (161)
T d2f4za1          77 PPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWT  156 (161)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcEEEecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHH
Confidence            69999999999999965 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 034713           80 EQSWT   84 (86)
Q Consensus        80 ~~~~~   84 (86)
                      ++||+
T Consensus       157 ~~~a~  161 (161)
T d2f4za1         157 ETFAK  161 (161)
T ss_dssp             HHHCC
T ss_pred             HHHhC
Confidence            99984

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=164.29  Aligned_cols=83  Identities=27%  Similarity=0.623  Sum_probs=80.3

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||++++.++|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|.+|+++|.++||++++
T Consensus        64 pP~V~f~t~i~HPnv~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~  143 (157)
T d1y8xa1          64 PPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR  143 (157)
T ss_dssp             CCEEEECSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CceeeecccCCCccccccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHh
Q 034713           81 QSW   83 (86)
Q Consensus        81 ~~~   83 (86)
                      .+.
T Consensus       144 ~~~  146 (157)
T d1y8xa1         144 GGY  146 (157)
T ss_dssp             SEE
T ss_pred             CCC
Confidence            654

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.96  E-value=7.7e-31  Score=163.71  Aligned_cols=82  Identities=18%  Similarity=0.534  Sum_probs=79.4

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV   79 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~   79 (86)
                      +|+|+|.|+||||||+.+|.||+++|. +.|+|++++.+||.+|+++|.+|++++|+|.+|+.+|.+|++.|.++||+||
T Consensus        62 pP~v~f~t~i~HPnV~~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~  141 (144)
T d1c4zd_          62 PPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFT  141 (144)
T ss_dssp             CCEEEESSCCCCTTBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHH
T ss_pred             CceeeccCCCCCcCCccCCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999998 4699999999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 034713           80 EQS   82 (86)
Q Consensus        80 ~~~   82 (86)
                      +||
T Consensus       142 ~ky  144 (144)
T d1c4zd_         142 KKY  144 (144)
T ss_dssp             TTC
T ss_pred             HhC
Confidence            986

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=99.96  E-value=3.4e-30  Score=163.64  Aligned_cols=83  Identities=31%  Similarity=0.650  Sum_probs=79.8

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN   67 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~   67 (86)
                      +|+|+|.|+||||||+.+|.||+++|+             +.|+|+++|.+||.+|+++|.+|++++|+|.+||.+|.+|
T Consensus        67 pP~v~f~t~i~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~  146 (164)
T d2ucza_          67 PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDN  146 (164)
T ss_dssp             CCEEEESSCCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTT
T ss_pred             CCeEEeecCceeceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence            599999999999999999999999995             4699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 034713           68 KREYNRRVREIVEQSW   83 (86)
Q Consensus        68 ~~~f~~~~~~~~~~~~   83 (86)
                      +++|.++||++++|++
T Consensus       147 ~~~f~~~~r~~~~k~~  162 (164)
T d2ucza_         147 RPEFERQVKLSILKSL  162 (164)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999999986

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.96  E-value=3.5e-30  Score=163.17  Aligned_cols=84  Identities=29%  Similarity=0.586  Sum_probs=79.9

Q ss_pred             CCeEEEecCCccccccC-CCceeeccccCCCCCcccHHHHHHH-HHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI   78 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~~~W~p~~~l~~vl~~-i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~   78 (86)
                      +|+|+|.|+||||||+. +|.||+++|.++|+|.+++.++|.. |+.||.+|++++|+|.+||++|++|+++|.++||+|
T Consensus        59 pP~v~F~t~i~HPnI~~~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~  138 (158)
T d1yf9a1          59 SPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREH  138 (158)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             ceeEEecCCCCCCCCccCcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence            59999999999999987 8999999999999999999999975 678899999999999999999999999999999999


Q ss_pred             HHHHhh
Q 034713           79 VEQSWT   84 (86)
Q Consensus        79 ~~~~~~   84 (86)
                      |++||+
T Consensus       139 ~~k~a~  144 (158)
T d1yf9a1         139 VSTHAT  144 (158)
T ss_dssp             HHHHCC
T ss_pred             HHHHCC
Confidence            999985

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=99.96  E-value=3.3e-29  Score=158.30  Aligned_cols=84  Identities=40%  Similarity=0.618  Sum_probs=79.8

Q ss_pred             CCeEEEecCCccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE   80 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~   80 (86)
                      +|+|+|.|+||||||+.+|.||+++|.+.|+|+++|.+||.+|++||.+|++++|+|.+||.+|+ |+.+|.++|++.++
T Consensus        72 pP~v~f~t~i~Hpnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~  150 (156)
T d2e2ca_          72 PPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYK  150 (156)
T ss_dssp             CCEEEESSCCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             CceeeccccCcCCCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999996 66789999999999


Q ss_pred             HHhhc
Q 034713           81 QSWTA   85 (86)
Q Consensus        81 ~~~~~   85 (86)
                      ++.++
T Consensus       151 ~~~~~  155 (156)
T d2e2ca_         151 TAQSD  155 (156)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            87764

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=99.95  E-value=7.3e-29  Score=155.55  Aligned_cols=78  Identities=28%  Similarity=0.503  Sum_probs=74.6

Q ss_pred             CCeEEEecCCccccccC-CCceeecccc--CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHhCHHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE   77 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~   77 (86)
                      +|+|+|.|+||||||+. +|.||+++|.  ++|+|++||.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+
T Consensus        67 pP~v~f~t~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~  146 (148)
T d1yrva1          67 PPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRL  146 (148)
T ss_dssp             CCEEEESSCCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHH
T ss_pred             CceeeeccccccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHh
Confidence            69999999999999995 8999999995  68999999999999999999999999999999999999999999999997


Q ss_pred             H
Q 034713           78 I   78 (86)
Q Consensus        78 ~   78 (86)
                      +
T Consensus       147 ~  147 (148)
T d1yrva1         147 F  147 (148)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-22  Score=126.42  Aligned_cols=76  Identities=17%  Similarity=0.397  Sum_probs=64.5

Q ss_pred             CCeEEEecCCccccc-cCCCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCC--CCCccHHHHHHHHhCHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKV-YADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNP--NSPANSEAARMFSENKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV-~~~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~--~~p~n~~aa~~~~~~~~~f~~~~~   76 (86)
                      +|+|+|.|+|||||+ +.+|.||+++|. ++|+|++||++||.+|+++|.+|++  +.+.|.+++.+ .+++++|++.||
T Consensus        82 PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~-~~~~~~y~~~~~  160 (162)
T d1zuoa1          82 PPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNL-ARAQQSYNSIVQ  160 (162)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCH-HHHHHHHHHHHH
T ss_pred             cceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHH-HHhHHHHHHHHh
Confidence            599999999999995 668999999996 5699999999999999999987664  56777766555 456788999988


Q ss_pred             H
Q 034713           77 E   77 (86)
Q Consensus        77 ~   77 (86)
                      .
T Consensus       161 ~  161 (162)
T d1zuoa1         161 I  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.81  E-value=8.3e-21  Score=115.46  Aligned_cols=50  Identities=34%  Similarity=0.655  Sum_probs=47.4

Q ss_pred             CCeEEEecCCccccccCCCceeecccc-------------CCCCCcccHHHHHHHHHHhhcCC
Q 034713            1 MTDFKFQFCLVLAKVYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDP   50 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~vcl~~l~-------------~~W~p~~~l~~vl~~i~~ll~~p   50 (86)
                      +|+|+|.|++|||||+.+|.||+++|.             ++|+|++|+++||.+|++||.+|
T Consensus        63 pP~v~f~t~i~Hpni~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          63 PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CCEEEECSCCCCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCeEEecCCCCccccCCCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            699999999999999999999999994             56999999999999999999987

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-20  Score=112.42  Aligned_cols=48  Identities=38%  Similarity=0.618  Sum_probs=45.8

Q ss_pred             CCeEEEecCC--ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhc
Q 034713            1 MTDFKFQFCL--VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLC   48 (86)
Q Consensus         1 ~P~v~F~t~i--~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~   48 (86)
                      +|+|+|.|++  |||||+.+|.||+++|+++|+|++|+++||.+|++||.
T Consensus        68 pP~v~F~t~~~~~Hpnv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          68 SPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CCEEEEESSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCccccccCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            6999999987  99999999999999999999999999999999999984

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.79  E-value=1.8e-21  Score=120.17  Aligned_cols=61  Identities=15%  Similarity=0.298  Sum_probs=54.3

Q ss_pred             CCeEEEecCCccccccC-CCceeecccc-CCCCCcccHHHHHHHHHHhhcCCCCCCCccHHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA   61 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~-~~W~p~~~l~~vl~~i~~ll~~p~~~~p~n~~aa   61 (86)
                      +|+|+|.|+||||||+. +|.||++++. ++|+|++||.+||.+|+++|.+|+..+..+++++
T Consensus        71 PP~v~f~t~i~HpnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g  133 (136)
T d1jatb_          71 PPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEG  133 (136)
T ss_dssp             CCEEEESBCCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred             CCEEEEeccccccccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            69999999999999996 6999999886 7899999999999999999999987666665554

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.78  E-value=8.9e-20  Score=108.66  Aligned_cols=48  Identities=27%  Similarity=0.490  Sum_probs=45.7

Q ss_pred             CCeEEEecCC-ccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhc
Q 034713            1 MTDFKFQFCL-VLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLC   48 (86)
Q Consensus         1 ~P~v~F~t~i-~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~   48 (86)
                      +|+|+|.|++ |||||+.+|.||+++|+++|+|++|+++||.+|++||+
T Consensus        61 pP~v~F~t~~~~hpni~~~G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          61 PPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             CCEEEECSSCCCBTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CCeEEEEeccccCceECCCCeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            6999999986 99999999999999999999999999999999999984

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.76  E-value=7e-19  Score=110.38  Aligned_cols=84  Identities=17%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCeEEEecCCccccccCCCce-eeccccCCCCCcccHHHHHHHHHHhhcCCCCCC--CccH-HHHHHHHhCHHHHHHHHH
Q 034713            1 MTDFKFQFCLVLAKVYADGSI-CLDILQNQWSPIYDVAAILTSIQSLLCDPNPNS--PANS-EAARMFSENKREYNRRVR   76 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~~G~v-cl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~~--p~n~-~aa~~~~~~~~~f~~~~~   76 (86)
                      +|+|+|.|+++|||++..|.+ |++++.++|+|++||.+||.+|++||.+|++..  +.+. .+..+|..+..+|..+++
T Consensus        64 pP~v~f~t~~~~~~~~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~  143 (157)
T d2f4wa1          64 PPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDK  143 (157)
T ss_dssp             CCEEEECSCCSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCH
T ss_pred             CCEEEeeCCCcccCCCCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            699999999999998754333 334456789999999999999999999988764  3433 445578888899999999


Q ss_pred             HHHHHHhh
Q 034713           77 EIVEQSWT   84 (86)
Q Consensus        77 ~~~~~~~~   84 (86)
                      .++++|.+
T Consensus       144 ~~~~~~~~  151 (157)
T d2f4wa1         144 VFCELFPE  151 (157)
T ss_dssp             HHHHHCHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.73  E-value=1.2e-18  Score=107.60  Aligned_cols=60  Identities=17%  Similarity=0.341  Sum_probs=52.7

Q ss_pred             CCeEEEecCCccccccC-CCceeecccc--CCCCCcccHHHHHHHHHHhhcCC-CCCCCccHHH
Q 034713            1 MTDFKFQFCLVLAKVYA-DGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDP-NPNSPANSEA   60 (86)
Q Consensus         1 ~P~v~F~t~i~HPNV~~-~G~vcl~~l~--~~W~p~~~l~~vl~~i~~ll~~p-~~~~p~n~~a   60 (86)
                      +|+|+|.|+||||||+. +|.+|++.+.  ++|+|++||++||.+|+++|.+| +.++|.|+|.
T Consensus        72 pP~v~F~t~i~HpnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          72 PPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             CCEEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             CCEEEEecCcccccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            59999999999999987 5777776654  58999999999999999999988 7888998874

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=2.7e-13  Score=84.29  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CCeEEEecC-----------CccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcCCCCC
Q 034713            1 MTDFKFQFC-----------LVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPN   53 (86)
Q Consensus         1 ~P~v~F~t~-----------i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~p~~~   53 (86)
                      +|.|.|.++           ++||||+.+|+||+++|.+.|.+..+|.+++..|+.+|.+|..+
T Consensus        88 pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_          88 PPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             CCEEEECCTTCCSCC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             CCEEEEecCcccccCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence            689999875           57999999999999999877789999999999999999987443

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.8e-12  Score=76.43  Aligned_cols=49  Identities=18%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             CCeEEEecC-----CccccccCCCceeeccccCCCCCcccHHHHHHHHHHhhcC
Q 034713            1 MTDFKFQFC-----LVLAKVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD   49 (86)
Q Consensus         1 ~P~v~F~t~-----i~HPNV~~~G~vcl~~l~~~W~p~~~l~~vl~~i~~ll~~   49 (86)
                      +|.|.|.+.     ++||||+.+|+||+++|.+.|.+..++.+++..|+.+|.+
T Consensus        82 pP~v~~~pt~~~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          82 PPICFVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             CCEEEECCCTTCEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCccccCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence            588988754     6899999999999999975556778999999999999985