Citrus Sinensis ID: 034735

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEcccEEEEEEEEEEEccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccEEEEEEEEEEEcccccccccccEEEcc
Coil and Loop (DISEMBL)
msgkgkrkeeeeydsdgsvdghappkkasktdssddsddivVCEISKNRRVSVRNWQGKVWVDIREFYVKEgkkfpgkkgsllsf
Flexible Loop (DISEMBL)
msgkgkrkeeeeydsdgsvdghappkkasktdssddsddivvceisknrrvsvrnwqgkvwvDIREFYVkegkkfpgkkgsllsf
Low Complexity Region (SEG)
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTdssddsddIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF
Disordered region (IsUnstruct)
***************************************IVVCEISKNRRVSVRNWQGKVWVDIREFYVKE**************
Disordered Region (DISOPRED)
******************************************CEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF
Disordered Region (DISEMBL)
**************************************DIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF
Disordered Region (DISPRO)
*************************************DDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
O65154	107	RNA polymerase II transcr	yes	no	1.0	0.794	0.662	3e-25
O65155	165	RNA polymerase II transcr	no	no	0.588	0.303	0.44	4e-07
Q872F4	172	Putative RNA polymerase I	N/A	no	0.729	0.360	0.384	0.0003
Q5ZK63	126	Activated RNA polymerase	no	no	0.705	0.476	0.397	0.0008

>sp|O65154|KIWI_ARATH RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 1/86 (1%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
          MS +GKRK+E+   SD   + HAP KK +K  D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 60 VWVDIREFYVKEGKKFPGKKGSLLSF 85
          +W+DIREFYVK+GK  PGKKG  LS 
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGISLSV 86

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.
Arabidopsis thaliana (taxid: 3702)

>sp|O65155|KELP_ARATH RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 35  DDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLS 84
           DD  D+++C +S  RRV+++ ++GK  V IRE+Y K+GK+ P  KG  L+
Sbjct: 91  DDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLT 140

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q872F4|TCP4_NEUCR Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=80A10.210 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 21 GHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
          G A P++ +K     D D     E+  NRR+S   ++    V+IRE+Y   GK  PGKKG
Sbjct: 27 GKAQPQELTK---GSDQDGNTFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKG 83

Query: 81 SLLSF 85
            LS 
Sbjct: 84 ISLSL 88

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. Binds single-stranded DNA.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q5ZK63|TCP4_CHICK Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 8/68 (11%)

Query: 18  SVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFP 76
           S  G A  K++S  D +       + +I K R VSVR+++GKV +DIRE+++ +EG+  P
Sbjct: 45  SSKGAASSKQSSNRDEN-------MFQIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMKP 97

Query: 77  GKKGSLLS 84
           G+KG  L+
Sbjct: 98  GRKGISLN 105

General coactivator that functions cooperatively with TAFs and mediates functional interactions between upstream activators and the general transcriptional machinery. May be involved in stabilizing the multiprotein transcription complex. Binds single-stranded DNA. Also binds, in vitro, non-specifically to double-stranded DNA (ds DNA).

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
255550572	84	RNA polymerase II transcriptional coacti	0.976	0.988	0.741	2e-27
297811013	107	predicted protein [Arabidopsis lyrata su	1.0	0.794	0.662	4e-24
388504274	106	unknown [Lotus japonicus]	1.0	0.801	0.647	1e-23
15242365	107	RNA polymerase II transcriptional coacti	1.0	0.794	0.662	1e-23
186521475	85	RNA polymerase II transcriptional coacti	0.976	0.976	0.654	3e-23
225438387	103	PREDICTED: RNA polymerase II transcripti	0.964	0.796	0.682	5e-22
449527763	118	PREDICTED: RNA polymerase II transcripti	0.941	0.677	0.647	3e-20
449457317	104	PREDICTED: RNA polymerase II transcripti	0.941	0.769	0.647	4e-20
357464751	107	RNA polymerase II transcriptional coacti	0.976	0.775	0.583	4e-19
356570189	202	PREDICTED: heat stress transcription fac	0.964	0.405	0.542	4e-18

>gi|255550572|ref|XP_002516336.1| RNA polymerase II transcriptional coactivator KIWI, putative [Ricinus communis] gi|223544566|gb|EEF46083.1| RNA polymerase II transcriptional coactivator KIWI, putative [Ricinus communis]

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 73/85 (85%), Gaps = 2/85 (2%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MSG+GKRKEEE    D S DG APPKKASKT ++DDSDDIVVCEISKNRRV+VRNWQGKV
Sbjct: 1  MSGRGKRKEEEGASDDNS-DGDAPPKKASKT-TTDDSDDIVVCEISKNRRVTVRNWQGKV 58

Query: 61 WVDIREFYVKEGKKFPGKKGSLLSF 85
          W+DIREFY+K+GK+ PGKKG  ++ 
Sbjct: 59 WIDIREFYLKDGKQLPGKKGITVTL 83

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811013|ref|XP_002873390.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319227|gb|EFH49649.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 67/86 (77%), Gaps = 1/86 (1%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
          MS +GKRK+E+   SD   + HAP KK +K  DSSD+SDDIVVC +SKNRRVSVRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESESHAPAKKVAKPADSSDESDDIVVCNLSKNRRVSVRNWNGK 60

Query: 60 VWVDIREFYVKEGKKFPGKKGSLLSF 85
          +W+DIREFYVK+GK  PGKKG  LS 
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGISLSV 86

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504274|gb|AFK40203.1| unknown [Lotus japonicus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 67/85 (78%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MSGKGK++++ +  SD   D HAPPKK+ K DS +D D IVVCEISKNRRVSVRNWQG++
Sbjct: 1  MSGKGKKRDDLDRASDADSDSHAPPKKSLKKDSDEDPDSIVVCEISKNRRVSVRNWQGRI 60

Query: 61 WVDIREFYVKEGKKFPGKKGSLLSF 85
           VDI EFYVK+GK+ PGKKG  L+ 
Sbjct: 61 VVDILEFYVKDGKQMPGKKGISLTM 85

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242365|ref|NP_196487.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana] gi|37079587|sp|O65154.1|KIWI_ARATH RecName: Full=RNA polymerase II transcriptional coactivator KIWI gi|2997684|gb|AAC08574.1| putative transcriptional co-activator [Arabidopsis thaliana] gi|9955512|emb|CAC05451.1| putative transcriptional co-activator (KIWI) [Arabidopsis thaliana] gi|28466805|gb|AAO44011.1| At5g09250 [Arabidopsis thaliana] gi|110736129|dbj|BAF00036.1| putative transcriptional co-activator [Arabidopsis thaliana] gi|225898901|dbj|BAH30581.1| hypothetical protein [Arabidopsis thaliana] gi|332003981|gb|AED91364.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana]

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 65/86 (75%), Gaps = 1/86 (1%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
          MS +GKRK+E+   SD   + HAP KK +K  D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 60 VWVDIREFYVKEGKKFPGKKGSLLSF 85
          +W+DIREFYVK+GK  PGKKG  LS 
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGISLSV 86

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186521475|ref|NP_001119194.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana] gi|332003982|gb|AED91365.1| RNA polymerase II transcriptional coactivator KIWI [Arabidopsis thaliana]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASK-TDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
          MS +GKRK+E+   SD   + HAP KK +K  D SD SDDIVVC ISKNRRVSVRNW GK
Sbjct: 1  MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query: 60 VWVDIREFYVKEGKKFPGKKGSLL 83
          +W+DIREFYVK+GK  PGKKG+ +
Sbjct: 61 IWIDIREFYVKDGKTLPGKKGNFI 84

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438387|ref|XP_002275126.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI [Vitis vinifera] gi|147846591|emb|CAN79502.1| hypothetical protein VITISV_022689 [Vitis vinifera] gi|296082597|emb|CBI21602.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (269), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 66/85 (77%), Gaps = 3/85 (3%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MS  GKRK+   Y SDG  D HAP KK+S  DS DD D+I+VCEIS+NRRVSVRNWQGKV
Sbjct: 1  MSKWGKRKQS--YASDGDSDDHAPSKKSSMKDS-DDPDNIIVCEISRNRRVSVRNWQGKV 57

Query: 61 WVDIREFYVKEGKKFPGKKGSLLSF 85
           VDIREFYVK+GK+ PGKKG  L+ 
Sbjct: 58 QVDIREFYVKDGKQMPGKKGISLTM 82

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527763|ref|XP_004170879.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Cucumis sativus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MS  GKRK +E    D   +G APP K  K DS DD+D+IVVCE+SKNRRV VRNWQGK+
Sbjct: 1  MSASGKRKGDE----DDVSEGDAPPSKTFKKDS-DDTDEIVVCELSKNRRVMVRNWQGKI 55

Query: 61 WVDIREFYVKEGKKFPGKKGSLLSF 85
           VDIREFYVK+GK+ PGKKG  LS 
Sbjct: 56 VVDIREFYVKDGKQMPGKKGISLSL 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457317|ref|XP_004146395.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Cucumis sativus] gi|449527765|ref|XP_004170880.1| PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Cucumis sativus]

 Score =  101 bits (252), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 63/85 (74%), Gaps = 5/85 (5%)

Query: 1  MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKV 60
          MS  GKRK +E    D   +G APP K  K DS DD+D+IVVCE+SKNRRV VRNWQGK+
Sbjct: 1  MSASGKRKGDE----DDVSEGDAPPSKTFKKDS-DDTDEIVVCELSKNRRVMVRNWQGKI 55

Query: 61 WVDIREFYVKEGKKFPGKKGSLLSF 85
           VDIREFYVK+GK+ PGKKG  LS 
Sbjct: 56 VVDIREFYVKDGKQMPGKKGISLSL 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464751|ref|XP_003602657.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|358348306|ref|XP_003638188.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|355491705|gb|AES72908.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula] gi|355504123|gb|AES85326.1| RNA polymerase II transcriptional coactivator KIWI [Medicago truncatula]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 62/84 (73%), Gaps = 1/84 (1%)

Query: 2  SGKGKRKEEEEYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVW 61
          +GKGK++EE ++ S+   + HAPPKK +K D+ DDS DIV  EI KNRRVSVR W  + W
Sbjct: 4  TGKGKKREELDHASEDDTESHAPPKKTAKKDTEDDSGDIVF-EIGKNRRVSVRTWNKQPW 62

Query: 62 VDIREFYVKEGKKFPGKKGSLLSF 85
          VDIREFY K+GK+ PGKKG  L+ 
Sbjct: 63 VDIREFYTKDGKQLPGKKGISLNM 86

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570189|ref|XP_003553273.1| PREDICTED: heat stress transcription factor A-6a-like [Glycine max]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 1  MSGKGKRKEEE-EYDSDGSVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGK 59
          MSGK KR++++   D+D + +GH  PKK+ K D  DD D I +CEIS N+RVSVR W+G 
Sbjct: 1  MSGKAKRRDDDGASDTDSNSEGHVSPKKSLKKDYDDDPDSITICEISNNKRVSVRKWKGN 60

Query: 60 VWVDIREFYVKEGKKFPGKKGSL 82
          + VDI EFY+K+GK+  G+KGSL
Sbjct: 61 IMVDIHEFYIKDGKQLAGRKGSL 83

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2184747	107	KIWI [Arabidopsis thaliana (ta	0.988	0.785	0.6	2.1e-22
TAIR|locus:2184732	138	AT5G09240 [Arabidopsis thalian	0.964	0.594	0.443	3.4e-13
TAIR|locus:2123416	165	KELP [Arabidopsis thaliana (ta	0.529	0.272	0.422	9.2e-09
ASPGD|ASPL0000000236	168	AN5806 [Emericella nidulans (t	0.435	0.220	0.567	2.9e-07
UNIPROTKB|E2R6X3	127	SUB1 "Uncharacterized protein"	0.482	0.322	0.5	3.2e-07
UNIPROTKB|F6Y016	144	LOC479283 "Uncharacterized pro	0.482	0.284	0.5	3.2e-07
UNIPROTKB|J9P938	132	J9P938 "Uncharacterized protei	0.482	0.310	0.5	3.2e-07
UNIPROTKB|J9NRQ9	125	SUB1 "Uncharacterized protein"	0.482	0.328	0.476	3.2e-07
ZFIN|ZDB-GENE-050522-151	123	sub1a "SUB1 homolog a (S. cere	0.929	0.642	0.341	1.3e-06
UNIPROTKB|Q5ZK63	126	SUB1 "Activated RNA polymerase	0.952	0.642	0.317	9e-06

TAIR|locus:2184747 KIWI [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 51/85 (60%), Positives = 59/85 (69%)

Query:     1 MSGKGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXX-IVVCEISKNRRVSVRNWQGK 59
             MS +GKRK+E+   SD   + HAP KK +K          IVVC ISKNRRVSVRNW GK
Sbjct:     1 MSSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGK 60

Query:    60 VWVDIREFYVKEGKKFPGKKGSLLS 84
             +W+DIREFYVK+GK  PGKKG  LS
Sbjct:    61 IWIDIREFYVKDGKTLPGKKGISLS 85

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184732 AT5G09240 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/88 (44%), Positives = 52/88 (59%)

Query:     1 MSGKGKRKEEEEYDSDGSVDG--HAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQG 58
             MS  GKRK+E+   SD   +   HAPPKK +K         I +C + KNRRV VRN  G
Sbjct:     1 MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIED--IFICNLDKNRRVFVRNCNG 58

Query:    59 KVWVDIREFYVKEGKKFP--GKKGSLLS 84
             ++W+ IR+F+VK+G   P   K+G  LS
Sbjct:    59 RIWIAIRQFFVKDGITLPCNSKQGISLS 86

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2123416 KELP [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 19/45 (42%), Positives = 32/45 (71%)

Query:    40 IVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLS 84
             +++C +S  RRV+++ ++GK  V IRE+Y K+GK+ P  KG  L+
Sbjct:    96 LIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLT 140

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003713 "transcription coactivator activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

ASPGD|ASPL0000000236 AN5806 [Emericella nidulans (taxid:162425)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 21/37 (56%), Positives = 31/37 (83%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKG 80
             EISK RRV++ +++GK  V+IRE+Y K+G++ PGKKG
Sbjct:    58 EISKMRRVTISSFRGKTMVNIREYYEKDGEELPGKKG 94

GO:0005575 "cellular_component" evidence=ND

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|E2R6X3 SUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLS 84
             +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct:    65 QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 106

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|F6Y016 LOC479283 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLS 84
             +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct:    82 QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 123

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P938 J9P938 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLS 84
             +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct:    70 QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 111

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9NRQ9 SUB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 96 (38.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 20/42 (47%), Positives = 32/42 (76%)

Query:    44 EISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLS 84
             +I K R +SVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct:    63 QIGKMRYLSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 104

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050522-151 sub1a "SUB1 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%)

Query:     4 KGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQGKVWVD 63
             K KRK++   +             ASK+        +   +I K R VSVR+++GKV +D
Sbjct:    23 KAKRKKQATPEKPSKKQKSGESSSASKSSSSNKNDNMF--QIGKMRYVSVRDFKGKVLID 80

Query:    64 IREFYV-KEGKKFPGKKGSLLS 84
             IRE+++ +EG+  PG+KG  L+
Sbjct:    81 IREYWMDQEGEMKPGRKGISLN 102

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5ZK63 SUB1 "Activated RNA polymerase II transcriptional coactivator p15" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/82 (31%), Positives = 44/82 (53%)

Query:     4 KGKRKEEEEYDSDGSVDGHAPPKKASKTXXXXXXXXIVVCEISKNRRVSVRNWQGKVWVD 63
             K KRK++   +            K + +          + +I K R VSVR+++GKV +D
Sbjct:    24 KAKRKKQAAPEKPVKKQKTGESSKGAASSKQSSNRDENMFQIGKMRYVSVRDFKGKVLID 83

Query:    64 IREFYV-KEGKKFPGKKGSLLS 84
             IRE+++ +EG+  PG+KG  L+
Sbjct:    84 IREYWMDQEGEMKPGRKGISLN 105

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O65154	KIWI_ARATH	No assigned EC number	0.6627	1.0	0.7943	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Al_scaffold_0006_830	annotation not avaliable (107 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_801217.1	annotation not avaliable (88 aa)				•					0.425

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	85
pfam02229	81	pfam02229, PC4, Transcriptional Coactivator p15 (P	2e-19

>gnl|CDD|216939 pfam02229, PC4, Transcriptional Coactivator p15 (PC4)

 Score = 74.2 bits (183), Expect = 2e-19
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 24 PPKKASKTDSSDDSDDI--VVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGS 81
          P KK+   +SS  SD    +  E+SKNRRV+V  ++GK  VDIRE+Y K+G+  PGKKG 
Sbjct: 1  PVKKSKSEESSKGSDAEGDIFFELSKNRRVTVSEFKGKTLVDIREYYEKDGEMLPGKKGI 60

Query: 82 LLS 84
           L+
Sbjct: 61 SLT 63

p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain. The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG2712	108	consensus Transcriptional coactivator [Transcripti	99.93
PF02229	56	PC4: Transcriptional Coactivator p15 (PC4); InterP	99.81

>KOG2712 consensus Transcriptional coactivator [Transcription]

Probab=99.93  E-value=7.9e-27  Score=160.93  Aligned_cols=67  Identities=54%  Similarity=0.880  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCcEEEEeCCceEEEEeeeCCceEEEeEEEEecCCeecCCcceeeecC
Q 034735           18 SVDGHAPPKKASKTDSSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKKFPGKKGSLLSF   85 (85)
Q Consensus        18 ~~d~~~p~KK~~~~~~~~~~~~~~~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~~Ge~~PgkKGIsL~~   85 (85)
                      ....++|+++..+... +++++.++|+|+++|||||++|+|+.||||||||.++|+|+||+||||||+
T Consensus        19 ~~~~~a~~~~v~k~~d-~~s~~~~i~~l~~~RrVtV~eFkGk~~VdIREyY~kdG~mlPgkKGISLs~   85 (108)
T KOG2712|consen   19 EKKSHAPNKKVEKPKD-DDSEDDNIFNLGKNRRVTVREFKGKILVDIREYYVKDGKMLPGKKGISLSL   85 (108)
T ss_pred             chhhhCCCccccCccc-CCcCccceeecCCceEEehhhcCCceEEehhHhhhccCccccCccccccCH
Confidence            4667777766665433 246667899999999999999999999999999999999999999999984

>PF02229 PC4: Transcriptional Coactivator p15 (PC4); InterPro: IPR003173 p15 has a bipartite structure composed of an amino-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain []

Probab=99.81  E-value=1.2e-20  Score=115.41  Aligned_cols=44  Identities=45%  Similarity=0.733  Sum_probs=40.1

Q ss_pred             EEEeCCceEEEEeeeCCceEEEeEEEEec-CCeecCCcceeeecC
Q 034735           42 VCEISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLSF   85 (85)
Q Consensus        42 ~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~-~Ge~~PgkKGIsL~~   85 (85)
                      +|+++.+++|+|++|+|++||||||||.+ +|+|+||+|||||+.
T Consensus         2 ~~~~~~~~rv~v~~fkG~~~vdIRe~y~~~~g~~~P~kKGIsL~~   46 (56)
T PF02229_consen    2 IKNLGEKRRVSVSEFKGKPYVDIREWYEKKDGEWKPTKKGISLTP   46 (56)
T ss_dssp             EETTEEEEEEEEEEETTSEEEEEEEEETTSSS-EEEEEEEEEE-H
T ss_pred             cccCCCeEEEEEEEeCCeEEEEEEeeEEcCCCcCcCcCCEEEcCH
Confidence            57899999999999999999999999998 999999999999973

The DNA-binding activity of the carboxy-terminal is disguised by the amino-terminal p15 domain. Activity is controlled by protein kinases that target the regulatory domain.; GO: 0003677 DNA binding, 0003713 transcription coactivator activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3PM7_B 2LTD_A 2LTT_B 3OBH_B 2L3A_B 2PHE_B 1PCF_B 2C62_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
1pcf_A	66	Human Transcriptional Coactivator Pc4 C-Terminal Do		4e-04

>pdb|1PCF|A Chain A, Human Transcriptional Coactivator Pc4 C-Terminal Domain Length = 66

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYVK-EGKKFPGKKGSLLS 84
          + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct: 2  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	5e-14

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A Length = 66

 Score = 59.4 bits (144), Expect = 5e-14
 Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLS 84
          + +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG  L+
Sbjct: 2  MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLN 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
4agh_A	158	Mosub1, transcription cofactor; ssDNA binding prot	99.95
1pcf_A	66	P15, transcriptional coactivator PC4; transcriptio	99.9
4g06_A	79	Uncharacterized protein; structural genomics, PSI-	81.36
2l3a_A	82	Uncharacterized protein; structural genomics, PSI-	80.42

>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}

Probab=99.95  E-value=8.8e-29  Score=177.97  Aligned_cols=85  Identities=33%  Similarity=0.498  Sum_probs=46.7

Q ss_pred             CCCCCccccccccc-CCCCCCCCCCCCCCCCCC-----CCCCCCCcEEEEeCCceEEEEeeeCCceEEEeEEEEecCCee
Q 034735            1 MSGKGKRKEEEEYD-SDGSVDGHAPPKKASKTD-----SSDDSDDIVVCEISKNRRVSVRNWQGKVWVDIREFYVKEGKK   74 (85)
Q Consensus         1 ms~k~krk~~~~~~-sD~~~d~~~p~KK~~~~~-----~~~~~~~~~~~~l~~~rrV~V~~fkG~~~vdIRE~Y~~~Ge~   74 (85)
                      ||-|.+.+.+...+ +++..+..+|.|+++...     ...+.++..+|+|+++|||+|++|+|++||||||||+++|+|
T Consensus         1 Msskkr~~~~~~~~~~~~~~~~~~~~Kk~k~~~~~~~~~~~d~~g~~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~   80 (158)
T 4agh_A            1 MTSKKRARDEEAQSGGSEAETKPAPVKKAKSKASNPGGSQVDAEGNPFWEISDKRRVGISQFKKMDFINIREYYEAGGEM   80 (158)
T ss_dssp             -------------------------------------CCEECTTSCEEEESSSSEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred             CCcccccchhhccccccccccccCCccccccccCCCCCCccCCCCCEeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcC
Confidence            77777776653333 333444444445444331     122344457999999999999999999999999999999999


Q ss_pred             cCCcceeeecC
Q 034735           75 FPGKKGSLLSF   85 (85)
Q Consensus        75 ~PgkKGIsL~~   85 (85)
                      +||||||||++
T Consensus        81 ~PgkKGISLs~   91 (158)
T 4agh_A           81 KPGKKGIGLTV   91 (158)
T ss_dssp             EEEEEEEEEEH
T ss_pred             CCcccceecCH
Confidence            99999999984

>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A

Probab=99.90  E-value=2.4e-24  Score=136.21  Aligned_cols=44  Identities=48%  Similarity=0.763  Sum_probs=41.8

Q ss_pred             EEEeCCceEEEEeeeCCceEEEeEEEE-ecCCeecCCcceeeecC
Q 034735           42 VCEISKNRRVSVRNWQGKVWVDIREFY-VKEGKKFPGKKGSLLSF   85 (85)
Q Consensus        42 ~~~l~~~rrV~V~~fkG~~~vdIRE~Y-~~~Ge~~PgkKGIsL~~   85 (85)
                      +|+||++|||+|++|+|++|||||||| .++|+++||||||||+.
T Consensus         2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~   46 (66)
T 1pcf_A            2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNP   46 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECH
T ss_pred             eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCH
Confidence            699999999999999999999999999 56999999999999973

>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}

Probab=81.36  E-value=2.2  Score=27.49  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             ceEEEEeeeCCce-EEEeEEEEecCCeecCCcceeeec
Q 034735           48 NRRVSVRNWQGKV-WVDIREFYVKEGKKFPGKKGSLLS   84 (85)
Q Consensus        48 ~rrV~V~~fkG~~-~vdIRE~Y~~~Ge~~PgkKGIsL~   84 (85)
                      .+-+.+-.|.|+. -+|||.|=.+.  .+.| |||+|+
T Consensus        31 ~KELNlVSWN~~~pKyDIR~W~pdh--~kMg-KGITLT   65 (79)
T 4g06_A           31 TKEINRVSFNGAPAKFDIRAWSPDH--TKMG-KGITLS   65 (79)
T ss_dssp             EEEEEEEEETTCCCEEEEEEECTTS--SCBC-CCEEEC
T ss_pred             eEEEEEEEeCCCCCCccccccCccc--cccc-CccccC
Confidence            5778888899765 89999985543  4667 999997

>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*

Probab=80.42  E-value=3.1  Score=26.96  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             ceEEEEeeeCCc-eEEEeEEEEecCCeecCCcceeeec
Q 034735           48 NRRVSVRNWQGK-VWVDIREFYVKEGKKFPGKKGSLLS   84 (85)
Q Consensus        48 ~rrV~V~~fkG~-~~vdIRE~Y~~~Ge~~PgkKGIsL~   84 (85)
                      .+-+..-.|.|. +-+|||.|=.+  -.+=| |||+|+
T Consensus        26 ~KELNlVSWNg~~pKyDIR~Wspd--h~kMG-KGITLT   60 (82)
T 2l3a_A           26 TKEINRVSFNGAPAKFDIRAWSPD--HTKMG-KGITLS   60 (82)
T ss_dssp             EEEEEEEEESSSCEEEEEEEECST--TCCCC-CCEEEC
T ss_pred             eEEEEEEeECCCCCCccccccCcc--hhhcc-Cccccc
Confidence            677888889876 48999999433  23445 999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1pcfa_	66	d.18.1.1 (A:) Transcriptional coactivator PC4 C-te	1e-12

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (133), Expect = 1e-12
 Identities = 20/38 (52%), Positives = 30/38 (78%), Gaps = 1/38 (2%)

Query: 44 EISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKG 80
          +I K R VSVR+++GKV +DIRE+++  EG+  PG+KG
Sbjct: 4  QIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKG 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1pcfa_	66	Transcriptional coactivator PC4 C-terminal domain	99.9

>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: ssDNA-binding transcriptional regulator domain
superfamily: ssDNA-binding transcriptional regulator domain
family: Transcriptional coactivator PC4 C-terminal domain
domain: Transcriptional coactivator PC4 C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7e-25  Score=137.24  Aligned_cols=44  Identities=48%  Similarity=0.797  Sum_probs=41.9

Q ss_pred             EEEeCCceEEEEeeeCCceEEEeEEEEe-cCCeecCCcceeeecC
Q 034735           42 VCEISKNRRVSVRNWQGKVWVDIREFYV-KEGKKFPGKKGSLLSF   85 (85)
Q Consensus        42 ~~~l~~~rrV~V~~fkG~~~vdIRE~Y~-~~Ge~~PgkKGIsL~~   85 (85)
                      +|+||++|||+|++|||++||||||||. ++|+|+||||||||++
T Consensus         2 ~~~L~~~rrvtV~~FkG~~~vdIReyY~dkdGe~~PgkKGIsL~~   46 (66)
T d1pcfa_           2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNP   46 (66)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECH
T ss_pred             eeecCCcEEEEEEEECCcEEEEEEEEEECCCCCCCCCCCeEEECH
Confidence            7999999999999999999999999996 5999999999999983