Citrus Sinensis ID: 034748

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQSK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccc
Coil and Loop (DISEMBL)
mdkigtveptledfsekkkrvrnplvpigalMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTayyygdtpwqsk
Flexible Loop (DISEMBL)
mdkigtveptledfsekkkrvrnplvPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAyyygdtpwqsk
Low Complexity Region (SEG)
MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQSK
Disordered region (IsUnstruct)
**********************NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDT*****
Disordered Region (DISOPRED)
*********************RNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYY*D******
Disordered Region (DISEMBL)
MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQSK
Disordered Region (DISPRO)
******VEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDT*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPWQSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q7X843	349	RING-H2 finger protein AT	yes	no	0.941	0.229	0.787	1e-33
Q9BW72	106	HIG1 domain family member	yes	no	0.741	0.594	0.515	3e-10
Q9CQJ1	106	HIG1 domain family member	yes	no	0.811	0.650	0.486	1e-09
Q4VC39	106	Putative HIG1 domain fami	no	no	0.811	0.650	0.458	5e-09
Q6CBQ8	140	Respiratory supercomplex	yes	no	0.729	0.442	0.419	2e-07
Q2GMG9	223	Respiratory supercomplex	N/A	no	0.670	0.255	0.438	3e-07
A7TFU8	162	Respiratory supercomplex	N/A	no	0.858	0.450	0.36	6e-06
Q7S455	221	Respiratory supercomplex	N/A	no	0.764	0.294	0.363	6e-06
Q6CWT4	158	Respiratory supercomplex	yes	no	0.670	0.360	0.368	1e-05
A8P006	177	Respiratory supercomplex	N/A	no	0.835	0.401	0.413	2e-05

>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2 SV=2

 Score =  141 bits (355), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPWQ 83
          GATV LMVGT YYYGD PW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BW72|HIG2A_HUMAN HIG1 domain family member 2A, mitochondrial OS=Homo sapiens GN=HIGD2A PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 3/66 (4%)

Query: 12 EDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATV-G 68
          E F EK  +K   NP+VPIG L TA  LT GL SF +GNS   QL+MR R+  QG TV  
Sbjct: 33 ESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQGFTVAA 92

Query: 69 LMVGTA 74
          +++G A
Sbjct: 93 ILLGLA 98

Homo sapiens (taxid: 9606)

>sp|Q9CQJ1|HIG2A_MOUSE HIG1 domain family member 2A OS=Mus musculus GN=Higd2a PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 6  TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          TV    E F EK  +K   NP+VPIG L TA  LT GL  F +G SH  QL+MR R+  Q
Sbjct: 27 TVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQ 86

Query: 64 GAT-VGLMVGTA 74
          G T V +++G A
Sbjct: 87 GFTVVAILLGLA 98

Mus musculus (taxid: 10090)

>sp|Q4VC39|HIG2B_HUMAN Putative HIG1 domain family member 2B OS=Homo sapiens GN=HIGD2B PE=5 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 6  TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          TV    E F EK  +K   NP+VPIG L TA VLT GL  F QGNS   +L+M  ++  Q
Sbjct: 27 TVYSNPEGFKEKFLRKTRENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMHTQIAAQ 86

Query: 64 GATV-GLMVGTA 74
          G T+  +++G A
Sbjct: 87 GFTIAAILLGLA 98

Homo sapiens (taxid: 9606)

>sp|Q6CBQ8|RCF1_YARLI Respiratory supercomplex factor 1, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RCF1 PE=3 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 31/62 (50%)

Query: 23 NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGDTPW 82
           PLVP+G L T G L     + R GN      +  ARV  QG TV  ++G A YYG  P 
Sbjct: 33 QPLVPLGCLATCGALILSARALRVGNKRQANRMFFARVAFQGLTVAALIGGAMYYGQDPK 92

Query: 83 QS 84
          Q 
Sbjct: 93 QK 94

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q2GMG9|RCF1_CHAGB Respiratory supercomplex factor 1, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RCF1 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 32/57 (56%)

Query: 23 NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYGD 79
           PLVPIG ++T    T    + R+G+ H  Q + RARV  QG TV  MVG   YY +
Sbjct: 33 EPLVPIGCILTIAAFTNAYRAMRRGDHHKVQRMFRARVAAQGFTVLAMVGGGMYYAE 89

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|A7TFU8|RCF1_VANPO Respiratory supercomplex factor 1, mitochondrial OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RCF1 PE=3 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 13 DFSEKK--KRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLM 70
          DF EK   +  + PLVPIG L+T G +     S R GN +  Q+  R RV +Q AT+  +
Sbjct: 21 DFMEKLVFRAKQQPLVPIGCLLTTGAIVLAAQSVRSGNKNKAQVFFRWRVGLQAATLVAL 80

Query: 71 VGTAYYYGDTPWQSK 85
          +  +Y Y     + K
Sbjct: 81 LAGSYIYSSNKAERK 95

Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) (taxid: 436907)

>sp|Q7S455|RCF1_NEUCR Respiratory supercomplex factor 1, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rcf-1 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 14  FSEKKKRVRN-PLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVG 72
           F +  +R+R  PL+PIG + T    T    + R+G+    Q + RARV  Q  TV  MV 
Sbjct: 36  FQKVSRRLREEPLIPIGCIATVAAFTGAYRAMRRGDHEQVQRMFRARVAAQAFTVVAMVA 95

Query: 73  TAYYYG 78
            ++YY 
Sbjct: 96  GSWYYA 101

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6CWT4|RCF1_KLULA Respiratory supercomplex factor 1, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RCF1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%)

Query: 22 RNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGTAYYYG 78
          + PLVP+G L T G +   +++ + GN    Q+  R RV +QG T+  +V  +Y YG
Sbjct: 30 QQPLVPLGTLATTGAVLLAVLNVKNGNKRKAQIWFRWRVALQGFTLIALVAGSYIYG 86

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|A8P006|RCF1_COPC7 Respiratory supercomplex factor 1, mitochondrial OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN=RCF1 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 3  KIGTVEPT-LEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRAR 59
          ++ TV P   E + EK  +K   NP VP+G L T G L    +  RQG S      MRAR
Sbjct: 6  RVATVYPPGYETWGEKFQRKFKENPWVPLGCLATCGALLMSAVKMRQGRSKEMNYWMRAR 65

Query: 60 VVVQGAT-VGLMVGT 73
          V +QG T V L+ G+
Sbjct: 66 VGLQGLTLVALVAGS 80

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (taxid: 240176)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
255540743	83	conserved hypothetical protein [Ricinus	0.929	0.951	0.860	5e-33
118486764	86	unknown [Populus trichocarpa]	0.976	0.965	0.795	2e-32
357477323	82	RING-H2 finger protein ATL3I [Medicago t	0.964	1.0	0.829	3e-32
15228322	349	RING-H2 finger protein ATL48 [Arabidopsi	0.941	0.229	0.787	5e-32
110739097	95	hypothetical protein [Arabidopsis thalia	0.976	0.873	0.771	2e-31
315307482	82	hypothetical protein [Gossypium hirsutum	0.905	0.939	0.831	3e-31
315307476	82	hypothetical protein [Gossypium hirsutum	0.905	0.939	0.831	3e-31
224119274	81	predicted protein [Populus trichocarpa]	0.941	0.987	0.8	8e-31
297819418	366	hypoxia-responsive family protein [Arabi	0.917	0.213	0.807	8e-31
30793881	81	unknown protein [Arabidopsis thaliana] g	0.941	0.987	0.787	2e-30

>gi|255540743|ref|XP_002511436.1| conserved hypothetical protein [Ricinus communis] gi|223550551|gb|EEF52038.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 73/79 (92%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          +GT EP LE   E+KKRVRNPLVP+GALMTAGVLTAGLISFR+GNSHLGQ+LMRARVVVQ
Sbjct: 1  MGTAEPNLEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSHLGQILMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPW 82
          GATV LMVGTAYYYGDTPW
Sbjct: 61 GATVALMVGTAYYYGDTPW 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486764|gb|ABK95217.1| unknown [Populus trichocarpa]

 Score =  142 bits (359), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 1  MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARV 60
          M+K+GT EP  E   E+KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARV
Sbjct: 1  MEKMGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARV 60

Query: 61 VVQGATVGLMVGTAYYYGDTPWQ 83
          VVQGATV LMVGTA+YYGD PW+
Sbjct: 61 VVQGATVALMVGTAFYYGDNPWK 83

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477323|ref|XP_003608947.1| RING-H2 finger protein ATL3I [Medicago truncatula] gi|355510002|gb|AES91144.1| RING-H2 finger protein ATL3I [Medicago truncatula] gi|388512809|gb|AFK44466.1| unknown [Medicago truncatula]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 72/82 (87%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          +G+ EP  EDF E+KKRVRNP VPIGAL+TAGVLTAGLISFRQGNS LGQ LMRARVVVQ
Sbjct: 1  MGSPEPGFEDFLEEKKRVRNPFVPIGALITAGVLTAGLISFRQGNSQLGQKLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPWQSK 85
          GATV LMVGTAYYYGD PWQ K
Sbjct: 61 GATVALMVGTAYYYGDNPWQKK 82

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228322|ref|NP_190386.1| RING-H2 finger protein ATL48 [Arabidopsis thaliana] gi|68565188|sp|Q7X843.2|ATL48_ARATH RecName: Full=RING-H2 finger protein ATL48; AltName: Full=YGHL1-C3HC4 RING fusion protein gi|4678325|emb|CAB41136.1| putative protein [Arabidopsis thaliana] gi|30038524|dbj|BAC75820.1| YGHL1-C3HC4 RING fusion protein [Arabidopsis thaliana] gi|332644837|gb|AEE78358.1| RING-H2 finger protein ATL48 [Arabidopsis thaliana]

 Score =  141 bits (355), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPWQ 83
          GATV LMVGT YYYGD PW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739097|dbj|BAF01465.1| hypothetical protein [Arabidopsis thaliana]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 75/83 (90%)

Query: 1  MDKIGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARV 60
          ++K+ +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARV
Sbjct: 12 LEKMSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARV 71

Query: 61 VVQGATVGLMVGTAYYYGDTPWQ 83
          VVQGATV LMVGT YYYGD PW+
Sbjct: 72 VVQGATVALMVGTGYYYGDNPWK 94

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315307482|gb|ADU04143.1| hypothetical protein [Gossypium hirsutum]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 71/77 (92%)

Query: 8  EPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATV 67
          EP+ E+  E+KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ+LMRARVVVQGATV
Sbjct: 5  EPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV 64

Query: 68 GLMVGTAYYYGDTPWQS 84
           LMVGTAYYYGD PW+S
Sbjct: 65 ALMVGTAYYYGDNPWKS 81

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315307476|gb|ADU04138.1| hypothetical protein [Gossypium hirsutum]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 71/77 (92%)

Query: 8  EPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATV 67
          EP+ E+  E+KKRVRNPLVP+GAL+TAGVLTAGLISFRQGNS LGQ+LMRARVVVQGATV
Sbjct: 5  EPSFEELLEEKKRVRNPLVPVGALITAGVLTAGLISFRQGNSQLGQMLMRARVVVQGATV 64

Query: 68 GLMVGTAYYYGDTPWQS 84
           LMVGTAYYYGD PW+S
Sbjct: 65 ALMVGTAYYYGDNPWKS 81

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119274|ref|XP_002318030.1| predicted protein [Populus trichocarpa] gi|224133480|ref|XP_002321578.1| predicted protein [Populus trichocarpa] gi|222858703|gb|EEE96250.1| predicted protein [Populus trichocarpa] gi|222868574|gb|EEF05705.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          +GT EP  E   E+KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct: 1  MGTAEPNFEQLFEEKKRVRNPLVPVGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPWQ 83
          GATV LMVGTA+YYGD PW+
Sbjct: 61 GATVALMVGTAFYYGDNPWK 80

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819418|ref|XP_002877592.1| hypoxia-responsive family protein [Arabidopsis lyrata subsp. lyrata] gi|297323430|gb|EFH53851.1| hypoxia-responsive family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  137 bits (345), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/78 (80%), Positives = 70/78 (89%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          +  VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct: 1  MSAVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTP 81
          GATV LMVGTAYYYGD P
Sbjct: 61 GATVALMVGTAYYYGDNP 78

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30793881|gb|AAP40393.1| unknown protein [Arabidopsis thaliana] gi|30794087|gb|AAP40486.1| unknown protein [Arabidopsis thaliana]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query: 4  IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
          + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct: 1  MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query: 64 GATVGLMVGTAYYYGDTPWQ 83
          GATV LMVGT YYYGD PW+
Sbjct: 61 GATVALMVGTGYYYGDNPWK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2097890	349	AT3G48030 "AT3G48030" [Arabido	0.941	0.229	0.787	3.8e-30
UNIPROTKB|F1NUW0	106	HIGD2A "Uncharacterized protei	0.717	0.575	0.571	4.4e-13
UNIPROTKB|Q9BW72	106	HIGD2A "HIG1 domain family mem	0.811	0.650	0.5	2.8e-11
UNIPROTKB|I3LSP3	106	HIGD2A "Uncharacterized protei	0.811	0.650	0.5	4.5e-11
UNIPROTKB|Q05AT5	106	HIGD2A "HIG1 domain family, me	0.811	0.650	0.5	7.4e-11
MGI|MGI:1914294	106	Higd2a "HIG1 domain family, me	0.811	0.650	0.486	7.4e-11
RGD|1309691	106	Higd2a "HIG1 hypoxia inducible	0.811	0.650	0.486	7.4e-11
RGD|1586494	106	Higd2al1 "HIG1 hypoxia inducib	0.811	0.650	0.486	7.4e-11
UNIPROTKB|Q4VC39	106	HIGD2B "Putative HIG1 domain f	0.811	0.650	0.458	5.2e-10
ZFIN|ZDB-GENE-050417-119	130	higd2a "HIG1 hypoxia inducible	0.741	0.484	0.5	6.6e-10

TAIR|locus:2097890 AT3G48030 "AT3G48030" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query:     4 IGTVEPTLEDFSEKKKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             + +VEP +ED  ++KKRVRNPLVP+GALMTAGVLTAGLISFR+GNS LGQ+LMRARVVVQ
Sbjct:     1 MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQ 60

Query:    64 GATVGLMVGTAYYYGDTPWQ 83
             GATV LMVGT YYYGD PW+
Sbjct:    61 GATVALMVGTGYYYGDNPWK 80

GO:0001666 "response to hypoxia" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NUW0 HIGD2A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query:    12 EDFSEK-KKRVR-NPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGL 69
             E F++K +++ R NPLVP+G L T GVLT GLISF++GN+   QL+MRARVV QG TV  
Sbjct:    33 EGFADKFRRKTRENPLVPLGCLCTLGVLTYGLISFKRGNTRHSQLMMRARVVAQGFTVAA 92

Query:    70 MVG 72
             ++G
Sbjct:    93 LLG 95

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

UNIPROTKB|Q9BW72 HIGD2A "HIG1 domain family member 2A, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 36/72 (50%), Positives = 44/72 (61%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV    E F EK  +K   NP+VPIG L TA  LT GL SF +GNS   QL+MR R+  Q
Sbjct:    27 TVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRGNSQRSQLMMRTRIAAQ 86

Query:    64 GATVG-LMVGTA 74
             G TV  +++G A
Sbjct:    87 GFTVAAILLGLA 98

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

UNIPROTKB|I3LSP3 HIGD2A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV  T E F EK  +K   NP+VPIG L TA  LT GL  F +G S   QL+MR R+  Q
Sbjct:    27 TVYSTSESFKEKFIRKTRENPMVPIGCLGTASALTYGLYCFHRGQSQRSQLMMRTRIAAQ 86

Query:    64 GAT-VGLMVGTA 74
             G T V ++VG A
Sbjct:    87 GFTIVAILVGLA 98

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q05AT5 HIGD2A "HIG1 domain family, member 2A" [Bos taurus (taxid:9913)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             +V  T E F EK  +K   NPLVPIG L TA  LT GL  F +G S   QL+MR R+  Q
Sbjct:    27 SVYSTSESFKEKFIRKTRENPLVPIGCLGTAAALTYGLYCFHRGQSQRSQLMMRTRIAAQ 86

Query:    64 GAT-VGLMVGTA 74
             G T V ++VG A
Sbjct:    87 GFTIVAILVGLA 98

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1914294 Higd2a "HIG1 domain family, member 2A" [Mus musculus (taxid:10090)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/72 (48%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV    E F EK  +K   NP+VPIG L TA  LT GL  F +G SH  QL+MR R+  Q
Sbjct:    27 TVYSNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQ 86

Query:    64 GATV-GLMVGTA 74
             G TV  +++G A
Sbjct:    87 GFTVVAILLGLA 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=IMP

RGD|1309691 Higd2a "HIG1 hypoxia inducible domain family, member 2A" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/72 (48%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV    E F EK  +K   NP+VPIG L TA  LT GL  F +G SH  QL+MR R+  Q
Sbjct:    27 TVYTNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQ 86

Query:    64 GATV-GLMVGTA 74
             G TV  +++G A
Sbjct:    87 GFTVVAILLGLA 98

GO:0005739 "mitochondrion" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0097250 "mitochondrial respiratory chain supercomplex assembly" evidence=ISO

RGD|1586494 Higd2al1 "HIG1 hypoxia inducible domain family, member 2A-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/72 (48%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV    E F EK  +K   NP+VPIG L TA  LT GL  F +G SH  QL+MR R+  Q
Sbjct:    27 TVYTNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQ 86

Query:    64 GATV-GLMVGTA 74
             G TV  +++G A
Sbjct:    87 GFTVVAILLGLA 98

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q4VC39 HIGD2B "Putative HIG1 domain family member 2B" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query:     6 TVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQ 63
             TV    E F EK  +K   NP+VPIG L TA VLT GL  F QGNS   +L+M  ++  Q
Sbjct:    27 TVYSNPEGFKEKFLRKTRENPVVPIGFLCTAAVLTNGLYCFHQGNSQCSRLMMHTQIAAQ 86

Query:    64 GATVG-LMVGTA 74
             G T+  +++G A
Sbjct:    87 GFTIAAILLGLA 98

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050417-119 higd2a "HIG1 hypoxia inducible domain family, member 2A" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query:    12 EDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATV-G 68
             E F +K  +K   NP VPIG L TAG L  GL +F+QG +   QLLMR R+  QG TV  
Sbjct:    57 EGFKDKFIRKTKENPFVPIGCLGTAGALIYGLGAFKQGKTRQSQLLMRTRIFAQGFTVVA 116

Query:    69 LMVGTA 74
             ++VG A
Sbjct:   117 IIVGVA 122

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7X843	ATL48_ARATH	No assigned EC number	0.7875	0.9411	0.2292	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G48030	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN- protein binding, zinc ion binding; INVOLVED IN- response to hypoxia; EXPRESSED IN- hypocotyl, root; CONTAINS InterPro DOMAIN/s- Zinc finger, RING-type (InterPro-IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro-IPR013083), Hypoxia induced protein conserved region (InterPro-IPR007667); BEST Arabidopsis thaliana protein match is- zinc finger (C3HC4-type RING finger) family protein (TAIR-AT1G2398 [...] (349 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G74458	unknown protein; unknown protein; LOCATED IN- endomembrane system; Has 5 Blast hits to 5 protei [...] (94 aa)							•		0.679
	AT1G66300	F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (456 aa)							•		0.677
	AT1G46120	transposable element gene; copia-like retrotransposon family, has a 1.6e-32 P-value blast match [...] (1205 aa)							•		0.677
	AT5G26262	unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (35 aa)							•		0.659
	AT2G31141	unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (46 aa)							•		0.659
	AT1G55045	unknown protein; unknown protein; Has 0 Blast hits to 0 proteins in 0 species (source- NCBI BLi [...] (65 aa)							•		0.659
	AT2G25980	jacalin lectin family protein; jacalin lectin family protein; FUNCTIONS IN- molecular_function [...] (449 aa)							•		0.657
	AT1G52120	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unkn [...] (459 aa)							•		0.657
	AT1G68870	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (147 aa)							•		0.649
	AT1G52070	jacalin lectin family protein; jacalin lectin family protein; FUNCTIONS IN- molecular_function [...] (315 aa)							•		0.599

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	85
pfam04588	54	pfam04588, HIG_1_N, Hypoxia induced protein conser	2e-17

>gnl|CDD|203051 pfam04588, HIG_1_N, Hypoxia induced protein conserved region

 Score = 68.7 bits (169), Expect = 2e-17
 Identities = 31/52 (59%), Positives = 35/52 (67%)

Query: 21 VRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVG 72
            NPLVPIG L TAG L AGL + R+GNS + Q LMRARV  QG TV  +V 
Sbjct: 2  KENPLVPIGCLATAGALLAGLYNMRRGNSKMSQKLMRARVAAQGFTVAALVA 53

This family is found in proteins thought to be involved in the response to hypoxia. Family members mostly come from diverse eukaryotic organisms however eubacterial members have been identified. This region is found at the N-terminus of the member proteins which are predicted to be transmembrane. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
KOG4431	100	consensus Uncharacterized protein, induced by hypo	99.95
PF04588	54	HIG_1_N: Hypoxia induced protein conserved region;	99.89
PF11137	63	DUF2909: Protein of unknown function (DUF2909); In	95.6
COG3197	58	FixS Uncharacterized protein, possibly involved in	80.44

>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]

Probab=99.95  E-value=6.9e-29  Score=166.48  Aligned_cols=79  Identities=44%  Similarity=0.638  Sum_probs=69.9

Q ss_pred             CCCChhhh--hhh---hhhhcCchHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Q 034748            7 VEPTLEDF--SEK---KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARVVVQGATVGLM-VGTAYYYGD   79 (85)
Q Consensus         7 ~~p~~~~~--~~~---rK~~~~plvpig~~at~~~L~~Gl~~~r-~G~~~~SnklMr~RV~aQg~tV~~l-vg~~~~~~~   79 (85)
                      +.|..||.  +.|   ||.+|||||||||++|++++++|+|++| +||+++||+|||+||+||||||++| +|.+|++.+
T Consensus         8 s~~~~~ed~~~~ekl~rk~kenP~VPlG~l~t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL~~G~~~~~~~   87 (100)
T KOG4431|consen    8 SLPSYEEDMSQKEKLLRKAKENPLVPLGCLGTTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGALVLGLAYTMYK   87 (100)
T ss_pred             CCCCCcchhhHHHHHHHHHHhCCCeeehHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            66666554  444   9999999999999999999999999999 9999999999999999999999776 777888888


Q ss_pred             CccccC
Q 034748           80 TPWQSK   85 (85)
Q Consensus        80 ~~~~k~   85 (85)
                      +++.|+
T Consensus        88 e~~~~~   93 (100)
T KOG4431|consen   88 EYPAKE   93 (100)
T ss_pred             chhhhh
Confidence            887764

>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions

Probab=99.89  E-value=5.7e-24  Score=127.90  Aligned_cols=54  Identities=56%  Similarity=0.788  Sum_probs=43.9

Q ss_pred             hhcCchHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 034748           20 RVRNPLVPIGALMTAGVLTAGLISFRQGNSHLGQLLMRARVVVQGATVGLMVGT   73 (85)
Q Consensus        20 ~~~~plvpig~~at~~~L~~Gl~~~r~G~~~~SnklMr~RV~aQg~tV~~lvg~   73 (85)
                      +||||++|+|+++|+++|.+|+++|++||+++|||+||+||+||++||++++++
T Consensus         1 ~ke~plv~ig~~~~~~~l~~g~~~~~~g~~~~s~klmr~RV~aQ~~tv~~l~~G   54 (54)
T PF04588_consen    1 FKENPLVPIGMLATVGALAYGLYNFRRGNMKTSQKLMRARVYAQGLTVAALVGG   54 (54)
T ss_dssp             S-S--CHHHHHHHHHHHHHHHHHHHTSSS----SSSSS-SHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999998764

HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.

>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function

Probab=95.60  E-value=0.15  Score=31.73  Aligned_cols=51  Identities=18%  Similarity=0.118  Sum_probs=39.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHh-h-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 034748           24 PLVPIGALMTAGVLTAGLISF-R-QGNSHLGQLLMRARVVVQGATVGLMVGTA   74 (85)
Q Consensus        24 plvpig~~at~~~L~~Gl~~~-r-~G~~~~SnklMr~RV~aQg~tV~~lvg~~   74 (85)
                      .++++-+++.++.|..|++.+ | +|+.++.-+..-+||.+-...+++++.+.
T Consensus         3 i~iv~lll~ii~sL~saL~~l~kd~~~~~rm~~~L~~RV~lS~~l~~lil~~~   55 (63)
T PF11137_consen    3 ILIVLLLLAIIASLFSALFFLVKDKGSSKRMVKALGRRVGLSALLFLLILIAL   55 (63)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788889999999999995 6 45777777788899999887777665433

>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]

Probab=80.44  E-value=2.9  Score=25.85  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=22.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhhcCC
Q 034748           24 PLVPIGALMTAGVLTAGLISFRQGN   48 (85)
Q Consensus        24 plvpig~~at~~~L~~Gl~~~r~G~   48 (85)
                      .++|+++++.++.|..-+|+.|.|+
T Consensus         6 ~Lipvsi~l~~v~l~~flWavksgQ   30 (58)
T COG3197           6 ILIPVSILLGAVGLGAFLWAVKSGQ   30 (58)
T ss_pred             eHHHHHHHHHHHHHHHHHHhcccCC
Confidence            6899999999999999999999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	3e-21
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	8e-19

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens} Length = 93

 Score = 78.7 bits (194), Expect = 3e-21
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 2  DKIGTVEPTLEDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRA 58
          D   ++    ED   K  +K    P VP+G    A ++  GL   + +GN+ +   L+  
Sbjct: 4  DTGVSLPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHM 63

Query: 59 RVVVQGATVG-LMVGTAYYYGDTPWQSK 85
          RV  QG  VG + VG  Y      W   
Sbjct: 64 RVAAQGFVVGAMTVGMGYSMYREFWAKP 91

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens} Length = 99

 Score = 72.6 bits (178), Expect = 8e-19
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 12 EDFSEK--KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARVVVQGATVG 68
          +  SEK  +K   +PLVPIG      V    +   R +G++ +   L+  RV  Q   VG
Sbjct: 15 DCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVG 74

Query: 69 -LMVGTAYYYGDTPWQSK 85
           +M+G  Y       +  
Sbjct: 75 AIMLGAVYTMYSDYVKRM 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
2lom_A	93	HIG1 domain family member 1A; membrane protein, he	99.89
2lon_A	99	HIG1 domain family member 1B; membrane protein, he	99.89

>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.89  E-value=2e-28  Score=161.32  Aligned_cols=77  Identities=29%  Similarity=0.480  Sum_probs=65.8

Q ss_pred             CCChhhhhhh---hhhhcCchHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCcc
Q 034748            8 EPTLEDFSEK---KKRVRNPLVPIGALMTAGVLTAGLISFR-QGNSHLGQLLMRARVVVQGATVGLMVGT-AYYYGDTPW   82 (85)
Q Consensus         8 ~p~~~~~~~~---rK~~~~plvpig~~at~~~L~~Gl~~~r-~G~~~~SnklMr~RV~aQg~tV~~lvg~-~~~~~~~~~   82 (85)
                      .|++||++.+   ||.+||||+||||++|+++|++|+++|+ +||.++||||||+||+|||+||++|+++ .|.+.++++
T Consensus         9 ~~~~~e~~~~K~~rk~ke~PlvpIg~~~~~~vl~~Gl~~~~~rG~~~~sqklmr~RV~aQg~tV~al~~g~~ys~~~~~~   88 (93)
T 2lom_A            9 LPSYEEDQGSKLIRKAKEAPFVPVGIAGFAAIVAYGLYKLKSRGNTKMSIHLIHMRVAAQGFVVGAMTVGMGYSMYREFW   88 (93)
Confidence            4666777766   9999999999999999999999999986 9999999999999999999999988555 555556665


Q ss_pred             cc
Q 034748           83 QS   84 (85)
Q Consensus        83 ~k   84 (85)
                      .|
T Consensus        89 ~~   90 (93)
T 2lom_A           89 AK   90 (93)
Confidence            43

>2lon_A HIG1 domain family member 1B; membrane protein, helical bundle; NMR {Homo sapiens}

Probab=99.89  E-value=2.8e-28  Score=162.16  Aligned_cols=78  Identities=24%  Similarity=0.354  Sum_probs=66.4

Q ss_pred             CCCChh-hhhhh---hhhhcCchHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHhccC
Q 034748            7 VEPTLE-DFSEK---KKRVRNPLVPIGALMTAGVLTAGLISF-RQGNSHLGQLLMRARVVVQGATVGLM-VGTAYYYGDT   80 (85)
Q Consensus         7 ~~p~~~-~~~~~---rK~~~~plvpig~~at~~~L~~Gl~~~-r~G~~~~SnklMr~RV~aQg~tV~~l-vg~~~~~~~~   80 (85)
                      ..|++| |++.+   ||.+||||+||||++|+++|++|+++| ++||+++||||||+||+|||+||++| +|..|.+.++
T Consensus         8 ~~~~~~ees~~~K~~rk~ke~PlvpIg~l~~~~vl~~Gl~~~~~rG~~~~Sqklmr~RV~AQg~tV~al~~g~~ysm~~~   87 (99)
T 2lon_A            8 WVPPDDEDCVSEKLLRKTRESPLVPIGLGGCLVVAAYRIYRLRSRGSTKMSIHLIHTRVAAQACAVGAIMLGAVYTMYSD   87 (99)
Confidence            356676 55555   999999999999999999999999998 59999999999999999999999987 5556666677


Q ss_pred             cccc
Q 034748           81 PWQS   84 (85)
Q Consensus        81 ~~~k   84 (85)
                      ++.|
T Consensus        88 ~~~~   91 (99)
T 2lon_A           88 YVKR   91 (99)
Confidence            6654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00