Citrus Sinensis ID: 034791

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLESLRKETAEAEAKF
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhppltlhrhpMCAEIIEEFQKchldhpigkffgdCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLESLRKETAEAEAKF
Flexible Loop (DISEMBL)
mhppltlhRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRqekavkrkanfeqskklKERLESLRKETAEAEAKF
Low Complexity Region (SEG)
MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQskklkerleslrkeTAEAEAKF
Disordered region (IsUnstruct)
*******HRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQ**********************************
Disordered Region (DISOPRED)
*HPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQ**********************************
Disordered Region (DISEMBL)
MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLE*************
Disordered Region (DISPRO)
****LTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLESLRKETAEA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKxxxxxxxxxxxxxxxxxxxxxxxxxxxxF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
O74347	104	COX assembly mitochondria	yes	no	0.867	0.692	0.337	2e-06
Q6DHJ6	78	COX assembly mitochondria	yes	no	0.903	0.961	0.328	1e-05
Q2NKR3	79	COX assembly mitochondria	yes	no	0.831	0.873	0.357	1e-05
Q8K199	79	COX assembly mitochondria	yes	no	0.831	0.873	0.342	2e-05
Q9NRP2	79	COX assembly mitochondria	yes	no	0.831	0.873	0.328	0.0002
Q28BU7	79	COX assembly mitochondria	yes	no	0.915	0.962	0.298	0.0004
Q8MNU7	102	COX assembly mitochondria	yes	no	0.855	0.696	0.342	0.0008

>sp|O74347|COXM1_SCHPO COX assembly mitochondrial protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cmc1 PE=3 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHP L ++    CA++I   ++CH     GKFFG+C  +K +L  C  +++  K + N E
Sbjct: 1  MHPHLDVNNQKQCADLIRALEECH--KSFGKFFGECNTIKYELKACLTKDRNDKARLNRE 58

Query: 61 QSKKLKERLESLRK 74
           ++  K+ +E  RK
Sbjct: 59 NARMRKKVIEENRK 72

Required for mitochondrial cytochrome c oxidase (COX) assembly and respiration.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6DHJ6|COXM2_DANRE COX assembly mitochondrial protein 2 homolog OS=Danio rerio GN=cmc2 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 1  MHPPLTLHRHP-MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          MHP L+ H H   C ++I   ++CH +H + KFFG C ++   +  C R+E   KR+ + 
Sbjct: 1  MHPDLSPHLHTDECNQLITLLKQCHKEHNVLKFFGTCNDMDRAMRECLRKEYQTKRERSK 60

Query: 60 EQSKKLKERLESLRKE 75
            +++++ RL+   KE
Sbjct: 61 AHAEEMRRRLKEQPKE 76

May be involved in cytochrome c oxidase biogenesis.

Danio rerio (taxid: 7955)

>sp|Q2NKR3|COXM2_BOVIN COX assembly mitochondrial protein 2 homolog OS=Bos taurus GN=CMC2 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E   KR  + 
Sbjct: 1  MHPDLSPHLHTEECNVLINLLKECHKNHSILKFFGHCNDLDREMRKCLKNEYMEKRNKSR 60

Query: 60 EQSKKLKERL 69
          E    +++RL
Sbjct: 61 ELGNAMRKRL 70

May be involved in cytochrome c oxidase biogenesis.

Bos taurus (taxid: 9913)

>sp|Q8K199|COXM2_MOUSE COX assembly mitochondrial protein 2 homolog OS=Mus musculus GN=Cmc2 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 1  MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E + +R  + 
Sbjct: 1  MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREMRKCLKNEYSERRTRSR 60

Query: 60 EQSKKLKERL 69
          E    ++ RL
Sbjct: 61 EHGAAMRRRL 70

May be involved in cytochrome c oxidase biogenesis.

Mus musculus (taxid: 10090)

>sp|Q9NRP2|COXM2_HUMAN COX assembly mitochondrial protein 2 homolog OS=Homo sapiens GN=CMC2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 1  MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          MHP L+ H H   C  +I   ++CH +H I KFFG C ++  +L +C + E    R  + 
Sbjct: 1  MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR 60

Query: 60 EQSKKLKERL 69
          E    ++++L
Sbjct: 61 EHGIAMRKKL 70

May be involved in cytochrome c oxidase biogenesis.

Homo sapiens (taxid: 9606)

>sp|Q28BU7|COXM2_XENTR COX assembly mitochondrial protein 2 homolog OS=Xenopus tropicalis GN=cmc2 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 1  MHPPLTLHRHP-MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          MHP L+ H H   C   I   +KCH ++   K+FG C +   ++ +C ++E   +R  + 
Sbjct: 1  MHPDLSSHLHTDECNVAINLLKKCHSENQFLKYFGQCNDFDREMRKCLKKEYEDRRAKSR 60

Query: 60 EQSKKLKERLESLRKET 76
           +S+ +K+RL +  K+ 
Sbjct: 61 ARSEHMKQRLLNAEKQA 77

Xenopus tropicalis (taxid: 8364)

>sp|Q8MNU7|COXM2_CAEEL COX assembly mitochondrial protein 2 homolog OS=Caenorhabditis elegans GN=C35D10.17 PE=3 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 1  MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
          M P L+ H H   C  +IE  Q+CH + PIGK  G C+     + +C ++E+  +R  N 
Sbjct: 1  MLPDLSPHLHTKECNMLIEFLQRCHSEKPIGKMIGKCSYWDEAVWQCTKKERIWRRDNNP 60

Query: 60 EQSKKLKERLESL 72
             +++ E L SL
Sbjct: 61 AYKRRIVE-LRSL 72

May be involved in cytochrome c oxidase biogenesis.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
224129762	87	predicted protein [Populus trichocarpa]	0.951	0.908	0.886	4e-34
449431882	78	PREDICTED: COX assembly mitochondrial pr	0.927	0.987	0.857	4e-33
145333578	80	cytochrome c oxidase biogenesis protein	0.951	0.987	0.85	7e-32
326500562	83	predicted protein [Hordeum vulgare subsp	0.963	0.963	0.837	1e-31
357460659	82	COX assembly mitochondrial protein-like	0.987	1.0	0.792	3e-31
357163763	83	PREDICTED: COX assembly mitochondrial pr	0.963	0.963	0.825	5e-31
356539767	82	PREDICTED: uncharacterized protein C16or	0.987	1.0	0.768	5e-31
356569859	82	PREDICTED: uncharacterized protein C16or	0.987	1.0	0.768	6e-31
218185440	459	hypothetical protein OsI_35493 [Oryza sa	0.963	0.174	0.775	1e-30
242075938	83	hypothetical protein SORBIDRAFT_06g01771	0.939	0.939	0.769	9e-30

>gi|224129762|ref|XP_002328796.1| predicted protein [Populus trichocarpa] gi|222839094|gb|EEE77445.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 75/79 (94%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLHRHPMC EIIE+FQKCHLDHPI KFFG+CTELKIKLDRCFR+EKAVKRKANFE
Sbjct: 1  MHPPLTLHRHPMCVEIIEQFQKCHLDHPIAKFFGECTELKIKLDRCFREEKAVKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEA 79
          QSKKLKERL++LRKE AE 
Sbjct: 61 QSKKLKERLQALRKEAAEG 79

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431882|ref|XP_004133729.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis sativus] gi|449511587|ref|XP_004163998.1| PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis sativus]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/77 (85%), Positives = 76/77 (98%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLH+HPMCAEIIE+FQKCH+DHP+GKFFG+CT+LKIKLDRCFRQEKA+KRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKLKERLESLRKETA 77
          QSKK+KERL++LRKE A
Sbjct: 61 QSKKMKERLDALRKENA 77

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145333578|ref|NP_001078417.1| cytochrome c oxidase biogenesis protein Cmc1-like protein [Arabidopsis thaliana] gi|145333595|ref|NP_001078418.1| cytochrome c oxidase biogenesis protein Cmc1-like protein [Arabidopsis thaliana] gi|110743950|dbj|BAE99808.1| hypothetical protein [Arabidopsis thaliana] gi|332659018|gb|AEE84418.1| cytochrome c oxidase biogenesis protein Cmc1-like protein [Arabidopsis thaliana] gi|332659019|gb|AEE84419.1| cytochrome c oxidase biogenesis protein Cmc1-like protein [Arabidopsis thaliana]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%), Gaps = 1/80 (1%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLT HRHPMC EIIEEFQKCH+DHPIGKFFG+CTELK+KLDRCFRQEKAVKRK NFE
Sbjct: 1  MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFE 60

Query: 61 QSKKLKERLESLRK-ETAEA 79
          QSKKL+ERL+++RK ETAE 
Sbjct: 61 QSKKLQERLKAIRKEETAET 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326500562|dbj|BAK06370.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  140 bits (352), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 74/80 (92%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHP LTLHRHPMCAEIIEEFQKCH+DHPI KFFG+CT+LKIKLDRCFRQEKAVKRKANFE
Sbjct: 1  MHPHLTLHRHPMCAEIIEEFQKCHVDHPIKKFFGECTDLKIKLDRCFRQEKAVKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEAE 80
          +SKK KERL++ +KE AE E
Sbjct: 61 ESKKFKERLQAYKKEMAEKE 80

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460659|ref|XP_003600611.1| COX assembly mitochondrial protein-like protein [Medicago truncatula] gi|355489659|gb|AES70862.1| COX assembly mitochondrial protein-like protein [Medicago truncatula]

 Score =  138 bits (348), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/82 (79%), Positives = 75/82 (91%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCH++HPI KFFG+CTELKIKLDRCFR EKAVKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEEFQKCHVEHPIAKFFGECTELKIKLDRCFRAEKAVKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEAEAK 82
          +SK+LKE+L  LRKE A + ++
Sbjct: 61 KSKELKEQLRVLRKENAASNSQ 82

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357163763|ref|XP_003579838.1| PREDICTED: COX assembly mitochondrial protein homolog [Brachypodium distachyon]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 74/80 (92%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHP LTLHRHPMCAEIIEEFQKCHLDHPI KFFG+CTELKIKLD+CFRQEKAVKRKANFE
Sbjct: 1  MHPHLTLHRHPMCAEIIEEFQKCHLDHPIKKFFGECTELKIKLDKCFRQEKAVKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEAE 80
          +SKK KE+L++ +KE AE +
Sbjct: 61 ESKKFKEQLQAYKKEMAEKD 80

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539767|ref|XP_003538365.1| PREDICTED: uncharacterized protein C16orf61 homolog [Glycine max]

 Score =  138 bits (347), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 76/82 (92%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLH+HPMCAEIIE+FQKCH++HPI KFFG+CT+LKIKLDRCFR+EKA+KRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEAEAK 82
          +SKKLKE+L +LRKE A +  +
Sbjct: 61 ESKKLKEQLRALRKENATSSGQ 82

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569859|ref|XP_003553112.1| PREDICTED: uncharacterized protein C16orf61 homolog [Glycine max]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 76/82 (92%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLH+HPMCAEIIE+FQKCH++HPI KFFG+CT+LKIKLDRCFR+EKA+KRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFE 60

Query: 61 QSKKLKERLESLRKETAEAEAK 82
          +SKKLKE+L +LRKE A +  +
Sbjct: 61 ESKKLKEQLRALRKENAASSGQ 82

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218185440|gb|EEC67867.1| hypothetical protein OsI_35493 [Oryza sativa Indica Group]

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 73/80 (91%)

Query: 1   MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
           MHPPLTLHRHPMCAEIIE FQKCH+DHP+ KFFG+CT+LKIKLD+CFRQEKA+KRKANFE
Sbjct: 377 MHPPLTLHRHPMCAEIIEAFQKCHVDHPVKKFFGECTDLKIKLDQCFRQEKALKRKANFE 436

Query: 61  QSKKLKERLESLRKETAEAE 80
           +SKK KE+L + +KE AE +
Sbjct: 437 ESKKFKEQLLAYKKEMAEQD 456

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242075938|ref|XP_002447905.1| hypothetical protein SORBIDRAFT_06g017710 [Sorghum bicolor] gi|241939088|gb|EES12233.1| hypothetical protein SORBIDRAFT_06g017710 [Sorghum bicolor]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 73/78 (93%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHPPLTLHRHPMCAE+IE FQKCH++HP+ KFFG+CT+LKIKLD+CFRQEKA+KRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEVIEAFQKCHVNHPVKKFFGECTDLKIKLDQCFRQEKALKRKANFE 60

Query: 61 QSKKLKERLESLRKETAE 78
          +SKK KERL++ ++E AE
Sbjct: 61 ESKKFKERLQAYKREMAE 78

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:4010713896	80	AT4G21192 "AT4G21192" [Arabido	0.734	0.762	0.901	1.2e-28
UNIPROTKB|E1C3Z2	75	C16orf61 "Uncharacterized prot	0.722	0.8	0.377	1.8e-07
POMBASE|SPBC21D10.07	104	cmc1 "mitochondrial inner memb	0.698	0.557	0.35	2.3e-07
ZFIN|ZDB-GENE-030616-409	78	cmc2 "COX assembly mitochondri	0.734	0.782	0.369	2.9e-07
UNIPROTKB|Q2NKR3	79	CMC2 "COX assembly mitochondri	0.722	0.759	0.377	4.8e-07
RGD|2324599	79	Cmc2 "COX assembly mitochondri	0.722	0.759	0.377	6.1e-07
UNIPROTKB|E2R8D2	79	CMC2 "Uncharacterized protein"	0.722	0.759	0.377	7.8e-07
MGI|MGI:1913781	79	Cmc2 "COX assembly mitochondri	0.722	0.759	0.360	1e-06
UNIPROTKB|Q9NRP2	79	CMC2 "COX assembly mitochondri	0.722	0.759	0.360	4.3e-06
SGD|S000007488	109	CMC2 "Protein involved in resp	0.674	0.513	0.303	0.00045

TAIR|locus:4010713896 AT4G21192 "AT4G21192" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 55/61 (90%), Positives = 58/61 (95%)

Query:     1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
             MHPPLT HRHPMC EIIEEFQKCH+DHPIGKFFG+CTELK+KLDRCFRQEKAVKRK NFE
Sbjct:     1 MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFE 60

Query:    61 Q 61
             Q
Sbjct:    61 Q 61

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|E1C3Z2 C16orf61 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  II   +KCH +H + +FFG C ++  ++ +C ++E   KR  N 
Sbjct:     1 MHPDLSPHLHTEECNLIISLLKKCHKEHNVLRFFGHCNDIDREMRKCLKKEYEEKRARNR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0005739 "mitochondrion" evidence=IEA

POMBASE|SPBC21D10.07 cmc1 "mitochondrial inner membrane protein involved in cytochrome oxidase biogenesis Cmc1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query:     1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
             MHP L ++    CA++I   ++CH     GKFFG+C  +K +L  C  +++  K + N E
Sbjct:     1 MHPHLDVNNQKQCADLIRALEECHKS--FGKFFGECNTIKYELKACLTKDRNDKARLNRE 58

GO:0005507 "copper ion binding" evidence=ISO

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=ISO

GO:0033617 "mitochondrial respiratory chain complex IV assembly" evidence=ISO

GO:0071276 "cellular response to cadmium ion" evidence=IMP

GO:0071585 "detoxification of cadmium ion" evidence=IMP

ZFIN|ZDB-GENE-030616-409 cmc2 "COX assembly mitochondrial protein 2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query:     1 MHPPLTLHRHP-MCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKR---K 56
             MHP L+ H H   C ++I   ++CH +H + KFFG C ++   +  C R+E   KR   K
Sbjct:     1 MHPDLSPHLHTDECNQLITLLKQCHKEHNVLKFFGTCNDMDRAMRECLRKEYQTKRERSK 60

Query:    57 ANFEQ 61
             A+ E+
Sbjct:    61 AHAEE 65

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q2NKR3 CMC2 "COX assembly mitochondrial protein 2 homolog" [Bos taurus (taxid:9913)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E   KR  + 
Sbjct:     1 MHPDLSPHLHTEECNVLINLLKECHKNHSILKFFGHCNDLDREMRKCLKNEYMEKRNKSR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0005739 "mitochondrion" evidence=ISS

RGD|2324599 Cmc2 "COX assembly mitochondrial protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E   KR  + 
Sbjct:     1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREMRKCLKNEYMEKRNRSR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|E2R8D2 CMC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 23/61 (37%), Positives = 34/61 (55%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E   KR  + 
Sbjct:     1 MHPDLSPHLHTEECNVLINLLKECHKNHSILKFFGRCNDLDREMRKCLKNEYMEKRTKSR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1913781 Cmc2 "COX assembly mitochondrial protein 2" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  +I   ++CH +H I KFFG C +L  ++ +C + E + +R  + 
Sbjct:     1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGHCNDLDREMRKCLKNEYSERRTRSR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NRP2 CMC2 "COX assembly mitochondrial protein 2 homolog" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query:     1 MHPPLTLHRHPM-CAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANF 59
             MHP L+ H H   C  +I   ++CH +H I KFFG C ++  +L +C + E    R  + 
Sbjct:     1 MHPDLSPHLHTEECNVLINLLKECHKNHNILKFFGYCNDVDRELRKCLKNEYVENRTKSR 60

Query:    60 E 60
             E
Sbjct:    61 E 61

GO:0005739 "mitochondrion" evidence=IDA

SGD|S000007488 CMC2 "Protein involved in respiratory chain complex assembly or maintenance" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query:     1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRK 56
             MHP L   R   C + I    KCH      + FG C   K  L++C ++     +K
Sbjct:     1 MHPQLEAERFHSCLDFINALDKCHQKEYYKRIFGLCNNEKDALNKCLKEASLNNKK 56


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.139   0.445    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        69   0.00091  102 3  11 22  0.41    28
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  98 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.64u 0.21s 7.85t   Elapsed:  00:00:00
  Total cpu time:  7.64u 0.21s 7.85t   Elapsed:  00:00:00
  Start:  Fri May 10 01:20:32 2013   End:  Fri May 10 01:20:32 2013

GO:0046872 "metal ion binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K199	COXM2_MOUSE	No assigned EC number	0.3428	0.8313	0.8734	yes	no
Q6DHJ6	COXM2_DANRE	No assigned EC number	0.3289	0.9036	0.9615	yes	no
Q9NRP2	COXM2_HUMAN	No assigned EC number	0.3285	0.8313	0.8734	yes	no
Q2NKR3	COXM2_BOVIN	No assigned EC number	0.3571	0.8313	0.8734	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
pfam08583	69	pfam08583, Cmc1, Cytochrome c oxidase biogenesis p	1e-10

>gnl|CDD|203990 pfam08583, Cmc1, Cytochrome c oxidase biogenesis protein Cmc1 like

 Score = 51.5 bits (124), Expect = 1e-10
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60
          MHP L       CAE+I+   +CH    + K FG C + K  +++C +Q +  +   + E
Sbjct: 1  MHPLLRKKARKKCAELIKALAECHKGRTL-KAFGKCNKQKRAMNKCLKQYRKDEALRDRE 59

Query: 61 QSKKLKERLE 70
          + + +KERLE
Sbjct: 60 KDEYIKERLE 69

Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
KOG4148	106	consensus Uncharacterized conserved protein [Funct	99.95
PF08583	69	Cmc1: Cytochrome c oxidase biogenesis protein Cmc1	99.81
KOG3468	128	consensus NADH:ubiquinone oxidoreductase, NDUFB7/B	90.65

>KOG4148 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.95  E-value=2.4e-28  Score=162.92  Aligned_cols=71  Identities=31%  Similarity=0.707  Sum_probs=69.5

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 034791            1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLES   71 (83)
Q Consensus         1 MHP~L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~n~~~ar~kr~r~~~   71 (83)
                      |||||++++|.+|++||+||++||+.++|+||||.||++|++|++||+.+++...++.++++..+|+++..
T Consensus         1 MHP~L~~~~~~~C~dlInaL~eCH~~~~~~kfFG~CN~~k~eL~kCLk~~~~nnk~r~~~e~~~mRkkv~~   71 (106)
T KOG4148|consen    1 MHPDLSPHLHEECNDLINALKECHKNHNILKFFGYCNDVKRELRKCLKNEYVNNKTRSREEGIAMRKKVFN   71 (106)
T ss_pred             CCCccChhhHHHHHHHHHHHHHHHhhhhHHHHHHhhccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988

>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae

Probab=99.81  E-value=1.6e-20  Score=114.12  Aligned_cols=69  Identities=42%  Similarity=0.735  Sum_probs=66.2

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 034791            1 MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFEQSKKLKERLE   70 (83)
Q Consensus         1 MHP~L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~n~~~ar~kr~r~~   70 (83)
                      |||+|..+.++.|.++|++|.+||++ ++.+++|.||+++.+|+.||++++...+..|+.+++..++|++
T Consensus         1 m~~~l~~~~~~~C~~~i~~~~~C~~~-~~~~~~~~C~~~~~~m~~Cl~~~~~~~~~~~~~~~~~~~~r~e   69 (69)
T PF08583_consen    1 MHPQLKEEAHKKCADEIEAFAECHKD-RTFKFVGKCREEKKAMNECLKEERNDERFRNREKAEYLKERIE   69 (69)
T ss_pred             CChHHhHHHHHHhHHHHHHHHHHHhc-chHHHHHhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999 8899999999999999999999999999999999999988864

It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.

>KOG3468 consensus NADH:ubiquinone oxidoreductase, NDUFB7/B18 subunit [Energy production and conversion]

Probab=90.65  E-value=1  Score=31.33  Aligned_cols=51  Identities=24%  Similarity=0.456  Sum_probs=42.3

Q ss_pred             CCCCCchhHHHHHHHHHhhhhhCchhhhccCCchHHHHHHHHHHHHHHHHHHH
Q 034791            5 LTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKA   57 (83)
Q Consensus         5 L~~~~h~~C~~lI~aL~eCH~~~~~~K~~G~CN~~k~~L~~CLk~ER~~r~~~   57 (83)
                      |.......|..+...|.+|-+.+|.  |+-.|.+++..-++|=..-.+.|-+.
T Consensus        49 l~l~~RDyCAH~lI~l~kCr~~~fp--~~~kC~~erh~~dkCEyed~vmRmke   99 (128)
T KOG3468|consen   49 LALGSRDYCAHLLIPLNKCRQDEFP--FPWKCEDERHVYDKCEYEDYVMRMKE   99 (128)
T ss_pred             cCcchHHHHHHHHHHHHHhhcccCC--cchhccccccchhhhhHHHHHHHHHH
Confidence            3444456899999999999999985  78999999999999988877776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00