Citrus Sinensis ID: 034822

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILLV
Secondary Structure (PSIPRED)
cEEEEHHHHHHccEEEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEcccccEEEccccEEEEEEcccccEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEEHHHHHHHcccccccEEEEEccccccEEEEEEEEEcccccccEEEEEHHHcccccEEEEEEEEEEEEccccccEEEEc
Coil and Loop (DISEMBL)
MVTFILQELNNYLTVTTSTAVIvdkstdgdflridfnmsfpslpcefasidvsnVLGTVSLGLLMLLHFLFLVEklkpillv
Flexible Loop (DISEMBL)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFlveklkpillv
Low Complexity Region (SEG)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNvlgtvslgllmllhflflveklKPILLV
Disordered region (IsUnstruct)
**TFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPIL**
Disordered Region (DISOPRED)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILLV
Disordered Region (DISEMBL)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILLV
Disordered Region (DISPRO)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVEKLKPILLV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q9T042	480	Protein disulfide-isomera	yes	no	0.865	0.147	0.605	4e-19
Q69SA9	485	Protein disulfide isomera	yes	no	0.768	0.129	0.666	2e-18
Q9LJU2	483	Protein disulfide-isomera	no	no	0.682	0.115	0.732	1e-17
Q803I2	383	Endoplasmic reticulum-Gol	yes	no	0.731	0.156	0.393	8e-05
Q66KH2	389	Endoplasmic reticulum-Gol	N/A	no	0.731	0.154	0.393	8e-05
Q6NVS2	384	Endoplasmic reticulum-Gol	yes	no	0.731	0.156	0.393	8e-05
Q09895	390	Uncharacterized protein C	yes	no	0.682	0.143	0.368	0.0001
Q5EAE0	383	Endoplasmic reticulum-Gol	yes	no	0.597	0.127	0.44	0.0004

>sp|Q9T042|PDI54_ARATH Protein disulfide-isomerase 5-4 OS=Arabidopsis thaliana GN=PDIL5-4 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 8   ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLL 67
           ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT  L +   +
Sbjct: 45  ELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTI 104

Query: 68  HFLFLVEKLKP 78
               +   ++P
Sbjct: 105 RKFSIDSNMRP 115

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)

>sp|Q69SA9|PDI54_ORYSJ Protein disulfide isomerase-like 5-4 OS=Oryza sativa subsp. japonica GN=PDIL5-4 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/63 (66%), Positives = 52/63 (82%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           MV     EL+NYL V TST+VIVD+S+DG+FLRIDFN+SFP+L CEFAS+DVS+VLGT  
Sbjct: 38  MVFLFGMELSNYLAVNTSTSVIVDRSSDGEFLRIDFNLSFPALSCEFASVDVSDVLGTNR 97

Query: 61  LGL 63
           L +
Sbjct: 98  LNI 100

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LJU2|PDI53_ARATH Protein disulfide-isomerase 5-3 OS=Arabidopsis thaliana GN=PDIL5-3 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 50/56 (89%)

Query: 8   ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGL 63
           EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT  L +
Sbjct: 45  ELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSDVLGTNRLNI 100

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
          M+     EL  YLT      + VD S  GD LRI+ ++ FP +PC + SID  +V G   
Sbjct: 38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSIDAMDVAGEQQ 96

Query: 61 L 61
          L
Sbjct: 97 L 97

Possible role in transport between endoplasmic reticulum and Golgi.

Danio rerio (taxid: 7955)

>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
          M+     EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G   
Sbjct: 38 MLILFFSELQYYLTKEVYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQ 96

Query: 61 L 61
          L
Sbjct: 97 L 97

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus laevis (taxid: 8355)

>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
          M+     EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID  +V G   
Sbjct: 38 MLILFFSELQYYLTKEIYPELFVDKSR-GDKLKINIDVIFPHMPCAYLSIDAMDVAGEQQ 96

Query: 61 L 61
          L
Sbjct: 97 L 97

Possible role in transport between endoplasmic reticulum and Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLG 57
          ++  +L E  NY  V     +IV+ S  GD + I+FN++FP +PC+  ++DV +V G
Sbjct: 38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDVLDVSG 93

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 12 YLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSL 61
          YLT      + VDKS  GD L+I+ N+ FP +PC + SID  +V G   L
Sbjct: 49 YLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSIDAMDVAGEQQL 97

Possible role in transport between endoplasmic reticulum and Golgi.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
224126339	484	predicted protein [Populus trichocarpa]	0.951	0.161	0.615	4e-19
388497088	457	unknown [Medicago truncatula]	0.951	0.170	0.602	7e-19
224117462	484	predicted protein [Populus trichocarpa]	0.951	0.161	0.602	2e-18
255563725	478	thioredoxin domain-containing protein, p	0.951	0.163	0.602	2e-18
357474735	477	Endoplasmic reticulum-Golgi intermediate	0.951	0.163	0.589	3e-18
356549839	480	PREDICTED: protein disulfide-isomerase 5	0.951	0.162	0.576	5e-18
297803392	480	hypothetical protein ARALYDRAFT_492089 [	0.865	0.147	0.605	2e-17
22328963	480	protein PDI-like 5-4 [Arabidopsis thalia	0.865	0.147	0.605	2e-17
238480964	532	protein PDI-like 5-4 [Arabidopsis thalia	0.865	0.133	0.605	2e-17
356543934	480	PREDICTED: protein disulfide-isomerase 5	0.951	0.162	0.564	2e-17

>gi|224126339|ref|XP_002319814.1| predicted protein [Populus trichocarpa] gi|222858190|gb|EEE95737.1| predicted protein [Populus trichocarpa]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/78 (61%), Positives = 57/78 (73%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           MV     ELNNYLTV TST+VIVD S+DG+FLRIDFN+SFPSL CEFAS+DVS+VLGT  
Sbjct: 38  MVFLFGMELNNYLTVNTSTSVIVDNSSDGEFLRIDFNLSFPSLSCEFASVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L +   +    +   LKP
Sbjct: 98  LNITKTIRKFSIDHDLKP 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497088|gb|AFK36610.1| unknown [Medicago truncatula]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 58/78 (74%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           M+     EL+NYL VTTST+VIVDKS+DGDFLRIDFN SFP+L CEFAS+DVS+VLGT  
Sbjct: 38  MMFLFGMELSNYLAVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L +   +    +  KL+P
Sbjct: 98  LNITKTVRKFSIDSKLRP 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117462|ref|XP_002317580.1| predicted protein [Populus trichocarpa] gi|222860645|gb|EEE98192.1| predicted protein [Populus trichocarpa]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 56/78 (71%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           M+     ELNNYLTV TST VIVD S+DG+FLRIDFN+SFPSL CEFAS+DVS+VLGT  
Sbjct: 38  MMFLFGMELNNYLTVNTSTTVIVDNSSDGEFLRIDFNISFPSLSCEFASVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L +   +    +   LKP
Sbjct: 98  LNITKTIRKFSIDHDLKP 115

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563725|ref|XP_002522864.1| thioredoxin domain-containing protein, putative [Ricinus communis] gi|223537948|gb|EEF39562.1| thioredoxin domain-containing protein, putative [Ricinus communis]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/78 (60%), Positives = 57/78 (73%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           MV     EL+NYLTV TST+VIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+VLGT  
Sbjct: 38  MVFLFGMELSNYLTVNTSTSVIVDKSSDGDFLRIDFNLSFPALSCEFASVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L +   +    +   L P
Sbjct: 98  LNITKTIRKFSIDHDLNP 115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474735|ref|XP_003607653.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] gi|355508708|gb|AES89850.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/78 (58%), Positives = 57/78 (73%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           M+     EL+NY  VTTST+VIVDKS+DGDFLRIDFN SFP+L CEFAS+DVS+VLGT  
Sbjct: 38  MMFLFGMELSNYFAVTTSTSVIVDKSSDGDFLRIDFNFSFPALSCEFASVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L +   +    +  KL+P
Sbjct: 98  LNITKTVRKFSIDSKLRP 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549839|ref|XP_003543298.1| PREDICTED: protein disulfide-isomerase 5-4-like [Glycine max]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/78 (57%), Positives = 58/78 (74%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           M+     ELN+YL+VTTST VIVDKS+DGD+LRIDFN+SFP+L CEFA++DVS+VLGT  
Sbjct: 38  MIFLFGMELNSYLSVTTSTQVIVDKSSDGDYLRIDFNISFPALSCEFAAVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L L   +    +   L+P
Sbjct: 98  LNLTKTVRKFSIDSNLRP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803392|ref|XP_002869580.1| hypothetical protein ARALYDRAFT_492089 [Arabidopsis lyrata subsp. lyrata] gi|297315416|gb|EFH45839.1| hypothetical protein ARALYDRAFT_492089 [Arabidopsis lyrata subsp. lyrata]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 8   ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLL 67
           ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT  L +   +
Sbjct: 45  ELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTI 104

Query: 68  HFLFLVEKLKP 78
               +   ++P
Sbjct: 105 RKFSIDSNMRP 115

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328963|ref|NP_567765.2| protein PDI-like 5-4 [Arabidopsis thaliana] gi|75213708|sp|Q9T042.1|PDI54_ARATH RecName: Full=Protein disulfide-isomerase 5-4; Short=AtPDIL5-4; AltName: Full=Protein disulfide-isomerase 7; Short=PDI7; AltName: Full=Protein disulfide-isomerase 8-2; Short=AtPDIL8-2; Flags: Precursor gi|4490704|emb|CAB38838.1| putative protein [Arabidopsis thaliana] gi|7269561|emb|CAB79563.1| putative protein [Arabidopsis thaliana] gi|15450832|gb|AAK96687.1| putative protein [Arabidopsis thaliana] gi|20259836|gb|AAM13265.1| putative protein [Arabidopsis thaliana] gi|332659897|gb|AEE85297.1| protein PDI-like 5-4 [Arabidopsis thaliana]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 8   ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLL 67
           ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT  L +   +
Sbjct: 45  ELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTI 104

Query: 68  HFLFLVEKLKP 78
               +   ++P
Sbjct: 105 RKFSIDSNMRP 115

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238480964|ref|NP_680742.2| protein PDI-like 5-4 [Arabidopsis thaliana] gi|332659898|gb|AEE85298.1| protein PDI-like 5-4 [Arabidopsis thaliana]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/71 (60%), Positives = 55/71 (77%)

Query: 8   ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLL 67
           ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+VLGT  L +   +
Sbjct: 97  ELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSDVLGTNRLNVTKTI 156

Query: 68  HFLFLVEKLKP 78
               +   ++P
Sbjct: 157 RKFSIDSNMRP 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543934|ref|XP_003540413.1| PREDICTED: protein disulfide-isomerase 5-4-like [Glycine max]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/78 (56%), Positives = 58/78 (74%)

Query: 1   MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
           M+     ELN+YL+V+TST VIVDKS+DGD+LRIDFN+SFP+L CEFA++DVS+VLGT  
Sbjct: 38  MIFLFGMELNSYLSVSTSTQVIVDKSSDGDYLRIDFNISFPALSCEFAAVDVSDVLGTNR 97

Query: 61  LGLLMLLHFLFLVEKLKP 78
           L L   +    +   L+P
Sbjct: 98  LNLTKTVRKFSIDSNLRP 115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2136491	532	PDIL5-4 "PDI-like 5-4" [Arabid	0.658	0.101	0.703	2.2e-15
TAIR|locus:2085750	483	PDIL5-3 "PDI-like 5-3" [Arabid	0.573	0.097	0.765	2.9e-14
TAIR|locus:2036371	484	AT1G50950 [Arabidopsis thalian	0.573	0.097	0.723	1e-13
UNIPROTKB|Q5EAE0	383	ERGIC3 "Endoplasmic reticulum-	0.609	0.130	0.450	2.4e-05
TAIR|locus:2034330	489	AT1G36050 "AT1G36050" [Arabido	0.609	0.102	0.452	7.3e-05
UNIPROTKB|Q9Y282	383	ERGIC3 "Endoplasmic reticulum-	0.609	0.130	0.431	8.4e-05
MGI|MGI:1913616	383	Ergic3 "ERGIC and golgi 3" [Mu	0.609	0.130	0.431	8.4e-05
TAIR|locus:2087817	354	AT3G22290 "AT3G22290" [Arabido	0.609	0.141	0.450	9.5e-05
POMBASE|SPAC24B11.08c	390	SPAC24B11.08c "COPII-coated ve	0.621	0.130	0.365	0.0003
ZFIN|ZDB-GENE-040426-795	383	ergic3 "ERGIC and golgi 3" [Da	0.609	0.130	0.411	0.00062

TAIR|locus:2136491 PDIL5-4 "PDI-like 5-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 38/54 (70%), Positives = 46/54 (85%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSN 54
             M+     ELNNYL V+TST+VIVD+S DGDFLR+DFN+SFPSL CEFAS+DVS+
Sbjct:    90 MIFLFGMELNNYLAVSTSTSVIVDRSADGDFLRLDFNISFPSLSCEFASVDVSD 143

GO:0005634 "nucleus" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0019932 "second-messenger-mediated signaling" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2085750 PDIL5-3 "PDI-like 5-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 2.9e-14, P = 2.9e-14
 Identities = 36/47 (76%), Positives = 44/47 (93%)

Query:     8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSN 54
             EL++YL V T+TAVIVDKS+DGDFLRIDFN+SFP+L CEFAS+DVS+
Sbjct:    45 ELSSYLEVNTTTAVIVDKSSDGDFLRIDFNISFPALSCEFASVDVSD 91

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2036371 AT1G50950 [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/47 (72%), Positives = 43/47 (91%)

Query:     8 ELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSN 54
             EL++YL + TST+VIVDKS+DGDFL IDFN+SFP+L CEFAS+DVS+
Sbjct:    45 ELSSYLAINTSTSVIVDKSSDGDFLNIDFNISFPALSCEFASVDVSD 91

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)]

 Score = 107 (42.7 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/51 (45%), Positives = 30/51 (58%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             M+   L EL  YLT      + VDKS  GD L+I+ N+ FP +PC + SID
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKININVLFPHMPCAYLSID 87

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 7.3e-05, P = 7.3e-05
 Identities = 24/53 (45%), Positives = 34/53 (64%)

Query:     1 MVTFIL--QELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             +V F+L   EL  YL   T T +IVD S  G+ LRI+F+++FP+L C   S+D
Sbjct:    37 VVMFLLFFSELRLYLHTVTETKLIVDTSR-GETLRINFDITFPALACSILSVD 88

GO:0003674 "molecular_function" evidence=ND

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             M+   L EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSID 87

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)]

 Score = 102 (41.0 bits), Expect = 8.4e-05, P = 8.4e-05
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             M+   L EL  YLT      + VDKS  GD L+I+ ++ FP +PC + SID
Sbjct:    38 MLLLFLSELQYYLTTEVHPELYVDKSR-GDKLKINIDVLFPHMPCAYLSID 87

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

TAIR|locus:2087817 AT3G22290 "AT3G22290" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             M T  L EL+ YL   T   + VD    G+ L I  NM+FPSLPC+  S+D
Sbjct:    38 MATLFLHELSYYLNTLTVHQMSVDLKR-GETLPIHVNMTFPSLPCDVLSVD 87

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

POMBASE|SPAC24B11.08c SPAC24B11.08c "COPII-coated vesicle component Erv46 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 97 (39.2 bits), Expect = 0.00030, P = 0.00030
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDV 52
             ++  +L E  NY  V     +IV+ S  GD + I+FN++FP +PC+  ++DV
Sbjct:    38 VIFIVLMEWINYRRVIAVHEIIVNPS-HGDRMEINFNITFPRIPCQILTVDV 88

GO:0000139 "Golgi membrane" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030134 "ER to Golgi transport vesicle" evidence=ISO

ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)]

 Score = 94 (38.1 bits), Expect = 0.00062, P = 0.00062
 Identities = 21/51 (41%), Positives = 28/51 (54%)

Query:     1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASID 51
             M+     EL  YLT      + VD S  GD LRI+ ++ FP +PC + SID
Sbjct:    38 MLILFFSELQYYLTKEVHPELFVDTSR-GDKLRINIDVIFPHMPCAYLSID 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        60   0.00091  102 3  11 22  0.46    27
                                                     29  0.37    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  413 (44 KB)
  Total size of DFA:  68 KB (2060 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.46u 0.13s 7.59t   Elapsed:  00:00:00
  Total cpu time:  7.46u 0.13s 7.59t   Elapsed:  00:00:00
  Start:  Fri May 10 02:03:31 2013   End:  Fri May 10 02:03:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
pfam13850	105	pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In	5e-13

>gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

 Score = 58.7 bits (143), Expect = 5e-13
 Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1  MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVS 60
          ++   + EL +YLT  T   ++VD S  G+ LRI+ +++FP LPC+  S+DV +V G   
Sbjct: 33 IIILFVSELRDYLTPVTRPELVVDTS-RGEKLRINLDITFPRLPCDLLSLDVMDVSGEHQ 91

Query: 61 LGL 63
          L +
Sbjct: 92 LDV 94

This family is the N-terminal of ERGIC proteins, ER-Golgi intermediate compartment clusters, otherwise known as Ervs, and is associated with family COPIIcoated_ERV, pfam07970. Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PF13850	96	ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate	99.9
KOG2667	379	consensus COPII vesicle protein [Intracellular tra	99.85

>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

Probab=99.90  E-value=2.6e-24  Score=132.87  Aligned_cols=64  Identities=34%  Similarity=0.711  Sum_probs=61.0

Q ss_pred             CEEEehhhhhhccccceEEEEEEccCCCCceEEEEEeEEecccccceeeeeeeecCCceeeCccc
Q 034822            1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLM   65 (82)
Q Consensus         1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~dItfp~~pC~~l~vDv~D~~G~~~~~v~~   65 (82)
                      |++|+++|+.+|+++++++++.||++++ ++++||+|||||+|||++|++|++|++|+++.|++|
T Consensus        33 ~~~L~~~E~~~y~~~~~~~~~~VD~~~~-~~l~in~ditf~~~pC~~l~vDv~D~~G~~~~dv~h   96 (96)
T PF13850_consen   33 IVILFISELYSYLSGEIKYQLVVDTSRD-EKLQINFDITFPHMPCDFLSVDVQDASGDHQLDVTH   96 (96)
T ss_pred             HHHHHHHHHHHHcccceeEEEEEcCCCC-ceEEEEEEEEECCCccCeeeeEeEccCCCeeccccC
Confidence            3578999999999999999999999888 999999999999999999999999999999999876

>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.1e-22  Score=148.57  Aligned_cols=73  Identities=40%  Similarity=0.670  Sum_probs=70.7

Q ss_pred             CEEEehhhhhhccccceEEEEEEccCCCCceEEEEEeEEecccccceeeeeeeecCCceeeCccccEEEEeccC
Q 034822            1 MVTFILQELNNYLTVTTSTAVIVDKSTDGDFLRIDFNMSFPSLPCEFASIDVSNVLGTVSLGLLMLLHFLFLVE   74 (82)
Q Consensus         1 ~~~L~~~E~~~y~~~~~~~~l~VD~~~~~~~l~In~dItfp~~pC~~l~vDv~D~~G~~~~~v~~~i~k~rld~   74 (82)
                      |++|+++|+..|+.+...++++||.+++ ++++||||||||+|||++++||++|.+|+++.++.+.|+|.|+++
T Consensus        38 i~~L~~~E~~~y~~~~~~~~~~vd~s~~-e~l~in~DItfp~lpC~~lsVDv~D~sg~~~l~i~~~i~k~rl~~  110 (379)
T KOG2667|consen   38 ILFLFFMELSQYLSVITSTELFVDDSRD-EKLQINFDITFPALPCSILSVDVMDVSGEMVLDIDHLIYKLRLDP  110 (379)
T ss_pred             HHHHHHHHHHHHhhhcceeEEEEeCCCC-ceeeeeeeEEeccCccceEEEEeeccccccccchhhhhhhcccCc
Confidence            4679999999999999999999999997 999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00