Citrus Sinensis ID: 034824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Secondary Structure (PSIPRED)
ccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
MPASLSRLANALPFSRLFRQLETEMETVVKvlqpgplgiiehkFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Flexible Loop (DISEMBL)
mpaslsrlanalpFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNayqeqgseilkdyidk
Low Complexity Region (SEG)
MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Disordered region (IsUnstruct)
**********ALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQ*************
Disordered Region (DISOPRED)
********ANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEI**DYI**
Disordered Region (DISEMBL)
MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Disordered Region (DISPRO)
*PASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQGSEILKDYIDK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
225436767	82	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.756	4e-28
255559300	82	conserved hypothetical protein [Ricinus	1.0	1.0	0.670	1e-24
224128548	82	predicted protein [Populus trichocarpa]	1.0	1.0	0.658	1e-22
388510574	82	unknown [Lotus japonicus]	1.0	1.0	0.646	1e-22
356572702	83	PREDICTED: uncharacterized protein LOC10	0.975	0.963	0.612	1e-21
356505526	84	PREDICTED: uncharacterized protein LOC10	0.975	0.952	0.625	1e-21
297817624	80	hypothetical protein ARALYDRAFT_486797 [	0.963	0.987	0.632	2e-21
449436543	80	PREDICTED: uncharacterized protein LOC10	0.963	0.987	0.632	2e-21
15229352	80	uncharacterized protein [Arabidopsis tha	0.963	0.987	0.632	2e-21
147818474	1388	hypothetical protein VITISV_002050 [Viti	0.829	0.048	0.757	6e-21

>gi|225436767|ref|XP_002267360.1| PREDICTED: uncharacterized protein LOC100240880 [Vitis vinifera] gi|296086621|emb|CBI32256.3| unnamed protein product [Vitis vinifera]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 67/82 (81%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          MP S SRL  +LPFS LFRQLE E+ETVVKVLQPGPLGIIEHKFS EE+R+A ATV RAV
Sbjct: 1  MPVSFSRLGKSLPFSGLFRQLEQEIETVVKVLQPGPLGIIEHKFSTEEIREAEATVNRAV 60

Query: 61 QNWLRNAYQEQGSEILKDYIDK 82
           NW RNA  EQGS+ILK YI K
Sbjct: 61 ANWRRNANLEQGSDILKSYIHK 82

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559300|ref|XP_002520670.1| conserved hypothetical protein [Ricinus communis] gi|223540055|gb|EEF41632.1| conserved hypothetical protein [Ricinus communis]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 66/82 (80%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  S S L N+LPFSR+FRQ+E E+ETVV VLQPGPLGI+EHKFSAEE+R A+ATV+RAV
Sbjct: 1  MRISFSALGNSLPFSRIFRQVEQEIETVVNVLQPGPLGIVEHKFSAEEIRDANATVQRAV 60

Query: 61 QNWLRNAYQEQGSEILKDYIDK 82
            W RNA  E  ++ILKD+I K
Sbjct: 61 ITWRRNANLEHQNDILKDFIHK 82

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128548|ref|XP_002320359.1| predicted protein [Populus trichocarpa] gi|222861132|gb|EEE98674.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 63/82 (76%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  SLS + +A PFSRL RQLE EMETVVKVLQPGPLGI+EH FSA E+RQA+A V  AV
Sbjct: 1  MRISLSGMRSAFPFSRLVRQLEQEMETVVKVLQPGPLGIVEHNFSAMEMRQANAIVRTAV 60

Query: 61 QNWLRNAYQEQGSEILKDYIDK 82
           NW RNA  E+ S +L+D+I K
Sbjct: 61 DNWRRNANLEKRSSVLRDFIQK 82

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510574|gb|AFK43353.1| unknown [Lotus japonicus]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 63/82 (76%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  S++   ++LPFS L R+LE EMETVVKVLQPGPLGIIEHKFS+EE+ +A+ATV +AV
Sbjct: 1  MVVSIAGFRSSLPFSGLIRKLEQEMETVVKVLQPGPLGIIEHKFSSEEIHKANATVSKAV 60

Query: 61 QNWLRNAYQEQGSEILKDYIDK 82
           NW RNA  E  S ILK YI K
Sbjct: 61 ANWRRNATLEDKSHILKGYISK 82

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572702|ref|XP_003554505.1| PREDICTED: uncharacterized protein LOC100787565 [Glycine max]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 63/80 (78%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  S++   ++LPFS L RQ+E EMETV+KVLQPGPLGIIEHKFSA+E+R+A+ATV +AV
Sbjct: 1  MRLSMAGFRSSLPFSALMRQVEQEMETVIKVLQPGPLGIIEHKFSADEIRKANATVSKAV 60

Query: 61 QNWLRNAYQEQGSEILKDYI 80
           NW  NA  +  + +LKDYI
Sbjct: 61 ANWRTNAILQDSNHVLKDYI 80

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505526|ref|XP_003521541.1| PREDICTED: uncharacterized protein LOC100776155 [Glycine max]

 Score =  106 bits (265), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 63/80 (78%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  S++   ++LPFS L RQ+E EMETV+KVLQPGPLGIIEHKFSA+E+R+A+ATV +AV
Sbjct: 2  MRLSMAGFRSSLPFSALIRQVEQEMETVMKVLQPGPLGIIEHKFSADEIRKANATVSKAV 61

Query: 61 QNWLRNAYQEQGSEILKDYI 80
           NW  NA  E  + +LKDYI
Sbjct: 62 TNWRTNAILEDYNHVLKDYI 81

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817624|ref|XP_002876695.1| hypothetical protein ARALYDRAFT_486797 [Arabidopsis lyrata subsp. lyrata] gi|297322533|gb|EFH52954.1| hypothetical protein ARALYDRAFT_486797 [Arabidopsis lyrata subsp. lyrata]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 4  SLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNW 63
          S+ R+A ALPFS + RQLE E ETV+ VLQPGPLGIIEHKFSA+E+R+A ATV RAV NW
Sbjct: 2  SIYRIARALPFSGILRQLEQEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDNW 61

Query: 64 LRNAYQEQGSEILKDYIDK 82
           R++  E  + +LKDY+ K
Sbjct: 62 RRHSEVEHANGLLKDYLYK 80

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436543|ref|XP_004136052.1| PREDICTED: uncharacterized protein LOC101214859 [Cucumis sativus] gi|449520873|ref|XP_004167457.1| PREDICTED: uncharacterized LOC101214859 [Cucumis sativus]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 61/79 (77%)

Query: 1  MPASLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAV 60
          M  S SRL +++PFS LFRQLE EMETV++VLQPGPLGIIEHKFSAEE+R+A +TV  AV
Sbjct: 1  MAISFSRLGSSIPFSGLFRQLEQEMETVIRVLQPGPLGIIEHKFSAEEMRRAQSTVREAV 60

Query: 61 QNWLRNAYQEQGSEILKDY 79
           NW RN   E+ S I  ++
Sbjct: 61 NNWRRNTIIEKQSSISSNH 79

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229352|ref|NP_191851.1| uncharacterized protein [Arabidopsis thaliana] gi|7573421|emb|CAB87737.1| putative protein [Arabidopsis thaliana] gi|332646890|gb|AEE80411.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 4  SLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNW 63
          S+ R+A ALPFS + RQLE E ETV+ VLQPGPLGIIEHKFSA+E+R+A ATV RAV +W
Sbjct: 2  SIYRIARALPFSGILRQLEKEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDSW 61

Query: 64 LRNAYQEQGSEILKDYIDK 82
           R++  E  + +LKDYI K
Sbjct: 62 RRHSEVEHANGLLKDYIYK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818474|emb|CAN74119.1| hypothetical protein VITISV_002050 [Vitis vinifera]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 57/70 (81%), Gaps = 2/70 (2%)

Query: 15   SRLFR--QLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNWLRNAYQEQG 72
            S LFR  QLE E+ETVVKVLQPGPLGIIEHKFS EE+R+A ATV RAV NW RNA  EQG
Sbjct: 1319 SALFRPLQLEQEIETVVKVLQPGPLGIIEHKFSTEEIREAEATVNRAVANWRRNANLEQG 1378

Query: 73   SEILKDYIDK 82
            S+ILK YI K
Sbjct: 1379 SDILKSYIHK 1388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2099147	80	AT3G62920 "AT3G62920" [Arabido	0.963	0.987	0.632	5.5e-22

TAIR|locus:2099147 AT3G62920 "AT3G62920" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query:     4 SLSRLANALPFSRLFRQLETEMETVVKVLQPGPLGIIEHKFSAEEVRQASATVERAVQNW 63
             S+ R+A ALPFS + RQLE E ETV+ VLQPGPLGIIEHKFSA+E+R+A ATV RAV +W
Sbjct:     2 SIYRIARALPFSGILRQLEKEAETVINVLQPGPLGIIEHKFSAQEIREAKATVSRAVDSW 61

Query:    64 LRNAYQEQGSEILKDYIDK 82
              R++  E  + +LKDYI K
Sbjct:    62 RRHSEVEHANGLLKDYIYK 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.358    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.42    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  92 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.73u 0.08s 9.81t   Elapsed:  00:00:00
  Total cpu time:  9.73u 0.08s 9.81t   Elapsed:  00:00:00
  Start:  Fri May 10 02:06:20 2013   End:  Fri May 10 02:06:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00