Citrus Sinensis ID: 034827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGRCGHN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MAWSATMIGALLGLGTQMYSNALrklpymrhpwehLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANErryfgrcghn
Flexible Loop (DISEMBL)
MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAAnerryfgrcghn
Low Complexity Region (SEG)
MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGRCGHN
Disordered region (IsUnstruct)
**WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL**********************
Disordered Region (DISOPRED)
***SATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLD**************FG*****
Disordered Region (DISEMBL)
MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGRCGHN
Disordered Region (DISPRO)
*AWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGRCG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWxxxxxxxxxxxxxxxxxxxxxRYFGRCGHN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
449433457	81	PREDICTED: uncharacterized protein LOC10	0.926	0.938	0.947	2e-35
255578511	81	conserved hypothetical protein [Ricinus	0.926	0.938	0.907	3e-33
224053651	81	predicted protein [Populus trichocarpa]	0.951	0.962	0.846	6e-33
224075385	81	predicted protein [Populus trichocarpa]	0.926	0.938	0.881	3e-32
356512239	80	PREDICTED: uncharacterized protein LOC10	0.890	0.912	0.890	2e-31
2982432	105	putative protein [Arabidopsis thaliana]	0.939	0.733	0.831	2e-31
115472221	81	Os07g0498300 [Oryza sativa Japonica Grou	0.926	0.938	0.828	7e-31
18415447	81	uncharacterized protein [Arabidopsis tha	0.926	0.938	0.828	1e-30
297800010	81	predicted protein [Arabidopsis lyrata su	0.926	0.938	0.828	1e-30
357122731	81	PREDICTED: uncharacterized protein LOC10	0.926	0.938	0.828	2e-30

>gi|449433457|ref|XP_004134514.1| PREDICTED: uncharacterized protein LOC101220487 isoform 2 [Cucumis sativus] gi|449531986|ref|XP_004172966.1| PREDICTED: uncharacterized LOC101220487 isoform 2 [Cucumis sativus]

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/76 (94%), Positives = 76/76 (100%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQLVKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLEKAKAANERRYF 76
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578511|ref|XP_002530119.1| conserved hypothetical protein [Ricinus communis] gi|223530373|gb|EEF32263.1| conserved hypothetical protein [Ricinus communis]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 72/76 (94%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          MA  AT IGAL GLGTQMYSNALRKLPYMRHPWEH++GMGLGAVFVNQLVKWDAQLQQDL
Sbjct: 1  MALGATAIGALFGLGTQMYSNALRKLPYMRHPWEHVIGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLEKAKAANERRYF 76
          DKML+KAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053651|ref|XP_002297912.1| predicted protein [Populus trichocarpa] gi|118484384|gb|ABK94069.1| unknown [Populus trichocarpa] gi|222845170|gb|EEE82717.1| predicted protein [Populus trichocarpa]

 Score =  144 bits (364), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 74/78 (94%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M +SAT++GALLGLGTQMYSNALRKLPYMRHPWEH++GMGLG VFVNQLVKWDAQL+QDL
Sbjct: 1  MVFSATVVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGVVFVNQLVKWDAQLEQDL 60

Query: 61 DKMLEKAKAANERRYFGR 78
          DKML+KAK ANERRYF +
Sbjct: 61 DKMLQKAKEANERRYFDQ 78

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075385|ref|XP_002304611.1| predicted protein [Populus trichocarpa] gi|118485985|gb|ABK94837.1| unknown [Populus trichocarpa] gi|222842043|gb|EEE79590.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 71/76 (93%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  SAT+IGALLGLGTQMYSNALRKLPYMRHPWEH++GMGLG VFVNQLVKWDAQL+QDL
Sbjct: 1  MVLSATVIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGVVFVNQLVKWDAQLEQDL 60

Query: 61 DKMLEKAKAANERRYF 76
          DKML KAK ANERRYF
Sbjct: 61 DKMLLKAKEANERRYF 76

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512239|ref|XP_003524828.1| PREDICTED: uncharacterized protein LOC100807917 [Glycine max] gi|356525004|ref|XP_003531117.1| PREDICTED: uncharacterized protein LOC100778929 [Glycine max]

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 71/73 (97%)

Query: 4  SATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKM 63
          SAT IGALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVFVNQL+KW+AQ++QDLDKM
Sbjct: 3  SATAIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLLKWEAQVEQDLDKM 62

Query: 64 LEKAKAANERRYF 76
          LEKAKAANERRY 
Sbjct: 63 LEKAKAANERRYI 75

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2982432|emb|CAA18240.1| putative protein [Arabidopsis thaliana] gi|7268810|emb|CAB79015.1| putative protein [Arabidopsis thaliana]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 71/77 (92%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVF NQLVKWD +L++DL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYFG 77
          D ML KA+AANERRYFG
Sbjct: 61 DVMLAKARAANERRYFG 77

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115472221|ref|NP_001059709.1| Os07g0498300 [Oryza sativa Japonica Group] gi|33146542|dbj|BAC79719.1| unknown protein [Oryza sativa Japonica Group] gi|50509990|dbj|BAD30453.1| unknown protein [Oryza sativa Japonica Group] gi|113611245|dbj|BAF21623.1| Os07g0498300 [Oryza sativa Japonica Group] gi|218199665|gb|EEC82092.1| hypothetical protein OsI_26096 [Oryza sativa Indica Group] gi|222637090|gb|EEE67222.1| hypothetical protein OsJ_24342 [Oryza sativa Japonica Group]

 Score =  137 bits (346), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 71/76 (93%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  + T+IGALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVFVNQLVKWD +L++DL
Sbjct: 1  MPATPTIIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDEKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 76
          DKMLE+AK ANERRYF
Sbjct: 61 DKMLERAKQANERRYF 76

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18415447|ref|NP_567596.1| uncharacterized protein [Arabidopsis thaliana] gi|15028287|gb|AAK76620.1| unknown protein [Arabidopsis thaliana] gi|19310709|gb|AAL85085.1| unknown protein [Arabidopsis thaliana] gi|21555789|gb|AAM63934.1| unknown [Arabidopsis thaliana] gi|332658880|gb|AEE84280.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 70/76 (92%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVF NQLVKWD +L++DL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 76
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800010|ref|XP_002867889.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313725|gb|EFH44148.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 70/76 (92%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVF NQLVKWD +L++DL
Sbjct: 1  MPLSATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLEKAKAANERRYF 76
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122731|ref|XP_003563068.1| PREDICTED: uncharacterized protein LOC100836427 [Brachypodium distachyon]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 70/76 (92%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  + T+IGALLGLGTQMYSNALRKLPYMRHPWEH+LGMGLG VFV+QLVKWD +L+QDL
Sbjct: 1  MPATPTIIGALLGLGTQMYSNALRKLPYMRHPWEHVLGMGLGVVFVHQLVKWDEKLKQDL 60

Query: 61 DKMLEKAKAANERRYF 76
          DKMLE+AK ANERRYF
Sbjct: 61 DKMLERAKQANERRYF 76

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:2120367	81	AT4G20150 "AT4G20150" [Arabido	0.926	0.938	0.828	6.9e-31

TAIR|locus:2120367 AT4G20150 "AT4G20150" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/76 (82%), Positives = 70/76 (92%)

Query:     1 MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
             M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH++GMGLGAVF NQLVKWD +L++DL
Sbjct:     1 MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query:    61 DKMLEKAKAANERRYF 76
             D ML KA+AANERRYF
Sbjct:    61 DVMLAKARAANERRYF 76


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.438    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.38    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  538 (57 KB)
  Total size of DFA:  113 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.09u 0.12s 9.21t   Elapsed:  00:00:02
  Total cpu time:  9.09u 0.12s 9.21t   Elapsed:  00:00:02
  Start:  Fri May 10 02:08:25 2013   End:  Fri May 10 02:08:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0009060 "aerobic respiration" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	82
PLN02806	81	PLN02806, PLN02806, complex I subunit	3e-44

>gnl|CDD|178403 PLN02806, PLN02806, complex I subunit

 Score =  136 bits (345), Expect = 3e-44
 Identities = 56/77 (72%), Positives = 66/77 (85%)

Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60
          M  +AT++GALLGLGTQ+YSNALRKLP MRHPWEH+L MGLGAVF NQLVKW+ +L++DL
Sbjct: 1  MVATATVVGALLGLGTQLYSNALRKLPLMRHPWEHVLAMGLGAVFANQLVKWEVKLKEDL 60

Query: 61 DKMLEKAKAANERRYFG 77
          DKML KA+AAN  RY  
Sbjct: 61 DKMLAKARAANNARYMD 77

Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PLN02806	81	complex I subunit	100.0
PF06374	117	NDUF_C2: NADH-ubiquinone oxidoreductase subunit b1	98.03
KOG4516	118	consensus NADH:ubiquinone oxidoreductase, NDUFC2/B	93.08
PF13436	118	Gly-zipper_OmpA: Glycine-zipper containing OmpA-li	83.1
PF15110	94	TMEM141: TMEM141 protein family; PDB: 2LOR_A.	80.92

>PLN02806 complex I subunit

Probab=100.00  E-value=9.6e-51  Score=269.78  Aligned_cols=78  Identities=72%  Similarity=1.197  Sum_probs=76.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 034827            1 MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEKAKAANERRYFGR   78 (82)
Q Consensus         1 M~~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~~~~an~~ry~~~   78 (82)
                      |++|+|+|||++|||||+|||+||||||||||||||++||+||+|+||+++||+||++||||||+++|++||+|||++
T Consensus         1 m~~~~t~~GA~lGlg~qlysNalRKLP~mrhPWeHV~~~G~GA~~~n~l~~we~kL~edldk~L~~~r~an~~ry~~~   78 (81)
T PLN02806          1 MVATATVVGALLGLGTQLYSNALRKLPLMRHPWEHVLAMGLGAVFANQLVKWEVKLKEDLDKMLAKARAANNARYMDE   78 (81)
T ss_pred             CcchHHHHHHHHHHHHHHHHhHHhhCccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            889999999999999999999999999999999999999999999999999999999999999999999999999975

>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14

Probab=98.03  E-value=3.3e-05  Score=54.19  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827            6 TMIGALLGLGTQMYSNALRKLPYM-RHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDKMLEK   66 (82)
Q Consensus         6 t~~Ga~~Glgtq~ysNaLRKLPlm-R~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~mL~~   66 (82)
                      .++++.+|++++++.|++.+=|.+ .-==.|++++.+|.++|-++.++++...+..|..++.
T Consensus        28 ~~~~g~~G~~~~ll~N~~~rRP~~~sGihr~ll~~t~g~~~Gy~~~k~~n~~~A~rD~~m~~   89 (117)
T PF06374_consen   28 SIWLGFLGFCTALLDNAINRRPPLKSGIHRQLLLATIGWFIGYYITKYRNYYYAERDADMRH   89 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence            378889999999999999999998 5456799999999999999999999999888887653

5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane

>KOG4516 consensus NADH:ubiquinone oxidoreductase, NDUFC2/B14

Probab=93.08  E-value=0.53  Score=33.64  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827           11 LLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDLDK   62 (82)
Q Consensus        11 ~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl~~   62 (82)
                      .+|++..++.|--+|=|+..-==.|.+.+++|.++|-++.+-|+.+.+--|.
T Consensus        35 ~~g~~s~~~~N~~~rkP~~~gi~~~ll~i~a~~~AGyy~~~~r~~~ya~RDa   86 (118)
T KOG4516|consen   35 VAGVGSAIFINWGFRKPVFSGIQKHLLFIAAGVGAGYYFDQKRNEYYAKRDA   86 (118)
T ss_pred             hhHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            5689999999999999999988899999999999999999887776654444

5B subunit [Energy production and conversion]

>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain

Probab=83.10  E-value=5  Score=27.32  Aligned_cols=27  Identities=19%  Similarity=0.046  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827           35 HLLGMGLGAVFVNQLVKWDAQLQQDLD   61 (82)
Q Consensus        35 hVl~~G~Ga~~~n~l~~wE~kl~~Dl~   61 (82)
                      -++++++|+++|...-....+.+.+-+
T Consensus        77 a~~GAa~Ga~~G~~~g~~~~~~~~~~~  103 (118)
T PF13436_consen   77 AAIGAAAGAAVGAAAGAARGRYQQYNP  103 (118)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            567888888888777655555544333

>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A

Probab=80.92  E-value=10  Score=26.18  Aligned_cols=55  Identities=24%  Similarity=0.297  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827            3 WSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL   60 (82)
Q Consensus         3 ~t~t~~Ga~~Glgtq~ysNaLRKLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~~Dl   60 (82)
                      +...+.|....++.|.+.+  ||+||=. -|-+++.+=+|.+++-+...||.+==+++
T Consensus        32 ~~tFv~G~~~~f~~Q~~iq--rrlpYp~-q~~~LVS~v~~sv~sY~vT~~et~~Cq~~   86 (94)
T PF15110_consen   32 LFTFVLGTGATFFLQKAIQ--RRLPYPF-QWNILVSVVVASVASYQVTRVETQKCQNL   86 (94)
T ss_dssp             HHHHHGGGGHHHHHHHHHH--TTSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHH--HhCCCCC-CchhHHHHHHhhhhhhhhhhHHHHHHHHH
Confidence            3445566667777787766  8999954 48899998889999988888887655544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	81.55

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=0.84  Score=29.45  Aligned_cols=53  Identities=21%  Similarity=0.263  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhh--cCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034827            5 ATMIGALLGLGTQMYSNALR--KLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQ   57 (82)
Q Consensus         5 ~t~~Ga~~Glgtq~ysNaLR--KLPlmR~PWehVl~~G~Ga~~~n~l~~wE~kl~   57 (82)
                      .++.|-.|+..++.|++|+.  .+|=+.+.|..++=.=-..++-..+..++..++
T Consensus         3 ~~~~g~~l~~l~~~yv~ain~g~~P~i~~~~~~~~~~e~~~a~e~a~~~Y~~~m~   57 (300)
T d1f5na1           3 IQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMG   57 (300)
T ss_dssp             EECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeHHHHHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999999999  899999999999766555555555555555554