Citrus Sinensis ID: 034833

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHEcccHHHHHHHHHHHHHHHHHHcccccccccccccccHEEEEEEccEEEcccccccHHHHcc
Coil and Loop (DISEMBL)
mgnkpavpmtvkQEREEiclkvvppldrAYVRWLVRDVEMihrftpinphavkppdhyiehmrlygrldvdlddpdlahlfk
Flexible Loop (DISEMBL)
mgnkpavpmtvkqereeiclkvvppldrayVRWLVRDVEMIHRftpinphavkppdHYIEHMRLYGRLDVDLDDPDLAHLFK
Low Complexity Region (SEG)
MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Disordered region (IsUnstruct)
****************EICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLD*********
Disordered Region (DISOPRED)
*************EREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Disordered Region (DISEMBL)
***********KQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Disordered Region (DISPRO)
******VPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIEHMRLYGRLDVDLDDPDLAHLFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
296084859	181	unnamed protein product [Vitis vinifera]	0.939	0.425	0.768	1e-27
225464838	77	PREDICTED: uncharacterized protein LOC10	0.939	1.0	0.768	7e-27
255565753	81	conserved hypothetical protein [Ricinus	0.963	0.975	0.719	6e-26
224102851	89	predicted protein [Populus trichocarpa]	0.987	0.910	0.651	1e-22
449444811	76	PREDICTED: uncharacterized protein LOC10	0.926	1.0	0.670	5e-22
224132334	89	predicted protein [Populus trichocarpa]	0.926	0.853	0.626	3e-21
22326986	80	uncharacterized protein [Arabidopsis tha	0.963	0.987	0.650	7e-15
297808221	80	hypothetical protein ARALYDRAFT_489071 [	0.963	0.987	0.650	9e-15
356526840	84	PREDICTED: uncharacterized protein LOC10	1.0	0.976	0.595	4e-12
339716072	81	putative hypothetical protein [Wolffia a	0.743	0.753	0.545	1e-11

>gi|296084859|emb|CBI28268.3| unnamed protein product [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 69/82 (84%), Gaps = 5/82 (6%)

Query: 1   MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIE 60
           MGNKP     VK+E+EEI LK+VPPLDRAYVRWL RD+E IH FTP NP AVKPPDHYIE
Sbjct: 105 MGNKP-----VKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIE 159

Query: 61  HMRLYGRLDVDLDDPDLAHLFK 82
           +MRL G LDV+LDDPDLAHLFK
Sbjct: 160 YMRLNGWLDVNLDDPDLAHLFK 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464838|ref|XP_002271152.1| PREDICTED: uncharacterized protein LOC100263775 [Vitis vinifera]

 Score =  124 bits (311), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/82 (76%), Positives = 69/82 (84%), Gaps = 5/82 (6%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIE 60
          MGNKP     VK+E+EEI LK+VPPLDRAYVRWL RD+E IH FTP NP AVKPPDHYIE
Sbjct: 1  MGNKP-----VKEEKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIE 55

Query: 61 HMRLYGRLDVDLDDPDLAHLFK 82
          +MRL G LDV+LDDPDLAHLFK
Sbjct: 56 YMRLNGWLDVNLDDPDLAHLFK 77

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565753|ref|XP_002523866.1| conserved hypothetical protein [Ricinus communis] gi|223536954|gb|EEF38592.1| conserved hypothetical protein [Ricinus communis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 70/82 (85%), Gaps = 3/82 (3%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIE 60
          MGNKP   +TVKQEREEI LK++PP+DRAY++WL RDVEMIH +TP N  AV+PPDHYIE
Sbjct: 1  MGNKP---VTVKQEREEILLKIIPPVDRAYIQWLARDVEMIHGWTPRNCRAVEPPDHYIE 57

Query: 61 HMRLYGRLDVDLDDPDLAHLFK 82
          +MRL G +DV LDDPDLAHLF+
Sbjct: 58 YMRLNGWIDVALDDPDLAHLFQ 79

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102851|ref|XP_002312828.1| predicted protein [Populus trichocarpa] gi|222849236|gb|EEE86783.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 5/86 (5%)

Query: 1  MGNKPA-----VPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPP 55
          MGNKP      V   + Q+R+EI LKVVPPLD AY+RWL RD+E +H FTP N  AV PP
Sbjct: 1  MGNKPTKQEREVVFPLAQDRQEILLKVVPPLDHAYLRWLARDLERVHGFTPGNCRAVTPP 60

Query: 56 DHYIEHMRLYGRLDVDLDDPDLAHLF 81
          DHY E+MRL G LDV+LDDPDLAHLF
Sbjct: 61 DHYTEYMRLQGWLDVNLDDPDLAHLF 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444811|ref|XP_004140167.1| PREDICTED: uncharacterized protein LOC101220037 [Cucumis sativus] gi|449519842|ref|XP_004166943.1| PREDICTED: uncharacterized protein LOC101230218 [Cucumis sativus]

 Score =  108 bits (270), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 62/82 (75%), Gaps = 6/82 (7%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIE 60
          MGNKP       ++R+EI +KV PPLD+A+VRWL RD+E IH F P NP AVKPPDHYIE
Sbjct: 1  MGNKPV------KQRDEIFVKVAPPLDQAFVRWLARDLERIHGFPPRNPRAVKPPDHYIE 54

Query: 61 HMRLYGRLDVDLDDPDLAHLFK 82
           MRLYG LDV LDDPDLA L K
Sbjct: 55 FMRLYGWLDVSLDDPDLARLLK 76

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132334|ref|XP_002328243.1| predicted protein [Populus trichocarpa] gi|222837758|gb|EEE76123.1| predicted protein [Populus trichocarpa]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 64/91 (70%), Gaps = 15/91 (16%)

Query: 1  MGNKPAVPMTVKQERE----------EICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPH 50
          MGNKP     VKQERE          E  LK+VPP+D AYVRWL RD+E IH FTP N  
Sbjct: 1  MGNKP-----VKQEREAVSPLAPNRPEFLLKIVPPMDHAYVRWLARDLERIHGFTPRNCR 55

Query: 51 AVKPPDHYIEHMRLYGRLDVDLDDPDLAHLF 81
          AV PPDHY+E+MR +G LDV+LDDPDLAHLF
Sbjct: 56 AVTPPDHYVEYMRSHGWLDVNLDDPDLAHLF 86

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326986|ref|NP_680207.1| uncharacterized protein [Arabidopsis thaliana] gi|42573447|ref|NP_974820.1| uncharacterized protein [Arabidopsis thaliana] gi|13374880|emb|CAC34514.1| putative protein [Arabidopsis thaliana] gi|37202024|gb|AAQ89627.1| At5g22210 [Arabidopsis thaliana] gi|51970446|dbj|BAD43915.1| unknown protein [Arabidopsis thaliana] gi|332005613|gb|AED92996.1| uncharacterized protein [Arabidopsis thaliana] gi|332005614|gb|AED92997.1| uncharacterized protein [Arabidopsis thaliana]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 63/83 (75%), Gaps = 4/83 (4%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPIN-PHAVKPPDHYI 59
          MGNK     TVK+EREEI LK+VPPLD+ ++RWL RD++ +H F P N   A+ PPD YI
Sbjct: 1  MGNKAT---TVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYI 57

Query: 60 EHMRLYGRLDVDLDDPDLAHLFK 82
          E MRL G LDVDLDDPDLAHLFK
Sbjct: 58 EFMRLNGSLDVDLDDPDLAHLFK 80

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808221|ref|XP_002871994.1| hypothetical protein ARALYDRAFT_489071 [Arabidopsis lyrata subsp. lyrata] gi|297317831|gb|EFH48253.1| hypothetical protein ARALYDRAFT_489071 [Arabidopsis lyrata subsp. lyrata]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 62/83 (74%), Gaps = 4/83 (4%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPIN-PHAVKPPDHYI 59
          MGNK     TVK+EREEI LK+VPPLD+ ++RWL RD++  H F P N   A+ PPD YI
Sbjct: 1  MGNKAT---TVKEEREEIHLKIVPPLDKVFLRWLARDLQRFHGFKPKNNTSAITPPDSYI 57

Query: 60 EHMRLYGRLDVDLDDPDLAHLFK 82
          E MRL G LDVDLDDPDLAHLFK
Sbjct: 58 EFMRLNGSLDVDLDDPDLAHLFK 80

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526840|ref|XP_003532024.1| PREDICTED: uncharacterized protein LOC100819740 [Glycine max]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 2/84 (2%)

Query: 1  MGNKPAVPMTV-KQEREEICL-KVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHY 58
          MGN+      + KQE+++I L K+VPP+D+ Y +WL RD+  IH FTP    AV+PPDHY
Sbjct: 1  MGNRFVRGNKLEKQEKDDIILLKIVPPVDQIYAKWLARDLARIHSFTPKRIRAVQPPDHY 60

Query: 59 IEHMRLYGRLDVDLDDPDLAHLFK 82
          +EHM+L G LDVDLDDPDLAHLFK
Sbjct: 61 VEHMKLNGWLDVDLDDPDLAHLFK 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339716072|gb|AEJ88283.1| putative hypothetical protein [Wolffia arrhiza]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 5/66 (7%)

Query: 1  MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPINPHAVKPPDHYIE 60
          MGNK A     K+E++EI ++V+PPLDRA+V+WL +D+E IH F   N   ++PPDHYIE
Sbjct: 1  MGNKLA-----KEEKDEIMVRVMPPLDRAFVKWLAQDLERIHGFKVKNQPPIRPPDHYIE 55

Query: 61 HMRLYG 66
          +MRL G
Sbjct: 56 YMRLQG 61

Source: Wolffia arrhiza

Species: Wolffia arrhiza

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
TAIR|locus:504956454	80	AT5G22210 "AT5G22210" [Arabido	0.963	0.987	0.650	5.3e-24

TAIR|locus:504956454 AT5G22210 "AT5G22210" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 54/83 (65%), Positives = 63/83 (75%)

Query:     1 MGNKPAVPMTVKQEREEICLKVVPPLDRAYVRWLVRDVEMIHRFTPIN-PHAVKPPDHYI 59
             MGNK     TVK+EREEI LK+VPPLD+ ++RWL RD++ +H F P N   A+ PPD YI
Sbjct:     1 MGNKAT---TVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYI 57

Query:    60 EHMRLYGRLDVDLDDPDLAHLFK 82
             E MRL G LDVDLDDPDLAHLFK
Sbjct:    58 EFMRLNGSLDVDLDDPDLAHLFK 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.144   0.462    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       82        82   0.00091  102 3  11 22  0.40    29
                                                     29  0.43    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  550 (59 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.51u 0.10s 9.61t   Elapsed:  00:00:02
  Total cpu time:  9.51u 0.10s 9.61t   Elapsed:  00:00:02
  Start:  Fri May 10 02:11:12 2013   End:  Fri May 10 02:11:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
PRK09974	111	putative regulator PrlF; Provisional	86.09

>PRK09974 putative regulator PrlF; Provisional

Probab=86.09  E-value=1.1  Score=31.27  Aligned_cols=42  Identities=31%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhhHhhccccCCCcCCCC-Cchhhhhhhh-ccceeccCCCCc
Q 034833           28 RAYVRWLVRDVEMIHRFTPINPHAVKP-PDHYIEHMRL-YGRLDVDLDDPD   76 (82)
Q Consensus        28 ~~yvrwlarDlerih~f~pkn~~aV~P-pDhYiE~MRL-~GwLDvdLdDPD   76 (82)
                      -+|+..|++|++.       |++.++| |+.-+.-|+. .+=.+||||+|=
T Consensus        63 g~FL~fLa~Di~~-------~p~~l~~l~~~l~~r~~~Lv~gv~VdLD~~i  106 (111)
T PRK09974         63 GAFLDFLAADIQN-------NPQRIRPFDKSLIQRGKKLVAGVDVDLDAPL  106 (111)
T ss_pred             HHHHHHHHHHHHh-------CchhccCCCHHHHHHHHHHhCCCccCCCCCC
Confidence            3789999999874       3334444 5678888886 899999999984

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00